MUC20-OT1

Summary

MUC20-OT1 (MUC20 overlapping transcript, HGNC:53807) is a long non-coding RNA gene on chromosome 3q29.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53807
Approved symbol	MUC20-OT1
Name	MUC20 overlapping transcript
Location	3q29
Locus type	RNA, long non-coding
Status	Approved
Aliases	MUCP1
Ensembl gene	ENSG00000242086
Ensembl biotype	lncRNA
Entrez	111753249
RNAcentral	URS00004B4309 — lncRNA, 4208 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 249 — 249 lncRNA

ENST00000414625, ENST00000417704, ENST00000420459, ENST00000420851, ENST00000424730, ENST00000425425, ENST00000429897, ENST00000431767, ENST00000432194, ENST00000432601, ENST00000438608, ENST00000445430, ENST00000445707, ENST00000446521, ENST00000451216, ENST00000451228, ENST00000451982, ENST00000452844, ENST00000453324, ENST00000455807, ENST00000457233, ENST00000593988, ENST00000594101, ENST00000594446, ENST00000594715, ENST00000594976, ENST00000595086, ENST00000595382, ENST00000596584, ENST00000597034, ENST00000597482, ENST00000597662, ENST00000597871, ENST00000597982, ENST00000598992, ENST00000599448, ENST00000599566, ENST00000600197, ENST00000600288, ENST00000600382, ENST00000600527, ENST00000601648, ENST00000601955, ENST00000602127, ENST00000602175, ENST00000608699, ENST00000608737, ENST00000612098, ENST00000615212, ENST00000615493, ENST00000618708, ENST00000620737, ENST00000625338, ENST00000625358, ENST00000625383, ENST00000625531, ENST00000625632, ENST00000625665, ENST00000625776, ENST00000625824, ENST00000625882, ENST00000625971, ENST00000626007, ENST00000626089, ENST00000626093, ENST00000626156, ENST00000626178, ENST00000626220, ENST00000626233, ENST00000626346, ENST00000626566, ENST00000626569, ENST00000626585, ENST00000626617, ENST00000626677, ENST00000626706, ENST00000626852, ENST00000626870, ENST00000626872, ENST00000626904, ENST00000626969, ENST00000626979, ENST00000627016, ENST00000627035, ENST00000627152, ENST00000627297, ENST00000627356, ENST00000627363, ENST00000627471, ENST00000627502, ENST00000627512, ENST00000627555, ENST00000627562, ENST00000627609, ENST00000627689, ENST00000627718, ENST00000627767, ENST00000627863, ENST00000627993, ENST00000628003, ENST00000628053, ENST00000628125, ENST00000628195, ENST00000628301, ENST00000628392, ENST00000628439, ENST00000628508, ENST00000628547, ENST00000628567, ENST00000628668, ENST00000628754, ENST00000628823, ENST00000628917, ENST00000628982, ENST00000629511, ENST00000629537, ENST00000629686, ENST00000629721, ENST00000629807, ENST00000629823, ENST00000629990, ENST00000630170, ENST00000630197, ENST00000630243, ENST00000630387, ENST00000630415, ENST00000630417, ENST00000630663, ENST00000630675, ENST00000630830, ENST00000630863, ENST00000630874, ENST00000631037, ENST00000631087, ENST00000631105, ENST00000631189, ENST00000631263, ENST00000631288, ENST00000631345, ENST00000631352, ENST00000631359, ENST00000631366, ENST00000763861, ENST00000763862, ENST00000763863, ENST00000763864, ENST00000763865, ENST00000763866, ENST00000763867, ENST00000763868, ENST00000763869, ENST00000763870, ENST00000763871, ENST00000763872, ENST00000763873, ENST00000763874, ENST00000763875, ENST00000763876, ENST00000763877, ENST00000763878, ENST00000763879, ENST00000763880, ENST00000763881, ENST00000763882, ENST00000763883, ENST00000763884, ENST00000763885, ENST00000763886, ENST00000763887, ENST00000763888, ENST00000763889, ENST00000763890, ENST00000763891, ENST00000763892, ENST00000763893, ENST00000763894, ENST00000763895, ENST00000763896, ENST00000763897, ENST00000763898, ENST00000763899, ENST00000763900, ENST00000763901, ENST00000763902, ENST00000763903, ENST00000763904, ENST00000763905, ENST00000763906, ENST00000763907, ENST00000763908, ENST00000763909, ENST00000763910, ENST00000763911, ENST00000763912, ENST00000763913, ENST00000763914, ENST00000763915, ENST00000763916, ENST00000763917, ENST00000763918, ENST00000763919, ENST00000763920, ENST00000763921, ENST00000763922, ENST00000763923, ENST00000763924, ENST00000763925, ENST00000763926, ENST00000763927, ENST00000763928, ENST00000763929, ENST00000763930, ENST00000763931, ENST00000763932, ENST00000763933, ENST00000763934, ENST00000763935, ENST00000763936, ENST00000763937, ENST00000763938, ENST00000763939, ENST00000763940, ENST00000763941, ENST00000763942, ENST00000763943, ENST00000763944, ENST00000763945, ENST00000763946, ENST00000763947, ENST00000763948, ENST00000763949, ENST00000763950, ENST00000763951, ENST00000763952, ENST00000763953, ENST00000763954, ENST00000763955, ENST00000763956, ENST00000763957, ENST00000763958, ENST00000763959, ENST00000763960, ENST00000763961, ENST00000763962, ENST00000763963, ENST00000763964, ENST00000763965, ENST00000763966, ENST00000763967

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414625 — 5 exons

Exon	Start	End
ENSE00003081920	195688533	195688797
ENSE00003711611	195681603	195681666
ENSE00003713715	195696361	195696524
ENSE00004120438	195683752	195683865
ENSE00004120527	195685818	195685939

Expression profiles

Bgee: expression breadth ubiquitous, 135 present calls, max score 99.44.

FANTOM5 (CAGE): breadth broad, TPM avg 0.5678 / max 81.2498, expressed in 251 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
40696	1.4006	816
40697	0.5678	251

Top tissues by expression

138 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right uterine tube	UBERON:0001302	99.44	gold quality
metanephros cortex	UBERON:0010533	98.97	gold quality
cortex of kidney	UBERON:0001225	98.81	gold quality
adenohypophysis	UBERON:0002196	98.55	gold quality
left ovary	UBERON:0002119	98.50	gold quality
left lobe of thyroid gland	UBERON:0001120	98.49	gold quality
mucosa of stomach	UBERON:0001199	98.49	gold quality
right hemisphere of cerebellum	UBERON:0014890	98.46	gold quality
thyroid gland	UBERON:0002046	98.42	gold quality
cerebellar hemisphere	UBERON:0002245	98.42	gold quality
lower esophagus mucosa	UBERON:0035834	98.42	gold quality
cerebellar cortex	UBERON:0002129	98.40	gold quality
sural nerve	UBERON:0015488	98.39	gold quality
pituitary gland	UBERON:0000007	98.37	gold quality
cerebellum	UBERON:0002037	98.37	gold quality
minor salivary gland	UBERON:0001830	98.33	gold quality
right lobe of thyroid gland	UBERON:0001119	98.32	gold quality
ovary	UBERON:0000992	98.26	gold quality
transverse colon	UBERON:0001157	98.24	gold quality
tibial nerve	UBERON:0001323	98.23	gold quality
small intestine Peyer’s patch	UBERON:0003454	98.23	gold quality
right ovary	UBERON:0002118	98.22	gold quality
saliva-secreting gland	UBERON:0001044	98.18	gold quality
vagina	UBERON:0000996	98.14	gold quality
body of pancreas	UBERON:0001150	98.05	gold quality
small intestine	UBERON:0002108	98.03	gold quality
body of uterus	UBERON:0009853	97.99	gold quality
colonic epithelium	UBERON:0000397	97.91	gold quality
kidney	UBERON:0002113	97.90	gold quality
uterine cervix	UBERON:0000002	97.87	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	36.20
E-ANND-3	yes	9.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.