MVK
gene geneOn this page
Also known as LRBPMK
Summary
MVK (mevalonate kinase, HGNC:7530) is a protein-coding gene on chromosome 12q24.11, encoding Mevalonate kinase (Q03426). Catalyzes the phosphorylation of mevalonate to mevalonate 5-phosphate, a key step in isoprenoid and cholesterol biosynthesis. It is a selective cancer dependency (DepMap: 84.2% of cell lines).
This gene encodes the peroxisomal enzyme mevalonate kinase. Mevalonate is a key intermediate, and mevalonate kinase a key early enzyme, in isoprenoid and sterol synthesis. Mevalonate kinase deficiency caused by mutation of this gene results in mevalonic aciduria, a disease characterized psychomotor retardation, failure to thrive, hepatosplenomegaly, anemia and recurrent febrile crises. Defects in this gene also cause hyperimmunoglobulinaemia D and periodic fever syndrome, a disorder characterized by recurrent episodes of fever associated with lymphadenopathy, arthralgia, gastrointestinal dismay and skin rash. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 4598 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mevalonate kinase deficiency (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 26
- Clinical variants (ClinVar): 809 total — 58 pathogenic, 38 likely-pathogenic
- Phenotypes (HPO): 100
- Cancer dependency (DepMap): dependent in 84.2% of screened cell lines
- MANE Select transcript:
NM_000431
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7530 |
| Approved symbol | MVK |
| Name | mevalonate kinase |
| Location | 12q24.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LRBP, MK |
| Ensembl gene | ENSG00000110921 |
| Ensembl biotype | protein_coding |
| OMIM | 251170 |
| Entrez | 4598 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 13 protein_coding, 5 nonsense_mediated_decay, 4 retained_intron, 2 protein_coding_CDS_not_defined
ENST00000228510, ENST00000392727, ENST00000447878, ENST00000535044, ENST00000537237, ENST00000539335, ENST00000539696, ENST00000540353, ENST00000545516, ENST00000545774, ENST00000546277, ENST00000636529, ENST00000636996, ENST00000697195, ENST00000697196, ENST00000697197, ENST00000697198, ENST00000878305, ENST00000878306, ENST00000878307, ENST00000878308, ENST00000878309, ENST00000920974, ENST00000965100
RefSeq mRNA: 8 — MANE Select: NM_000431
NM_000431, NM_001114185, NM_001301182, NM_001414511, NM_001414512, NM_001414513, NM_001414514, NM_001414515
CCDS: CCDS73522, CCDS9132
Canonical transcript exons
ENST00000228510 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002243275 | 109586022 | 109586125 |
| ENSE00002290095 | 109573794 | 109573873 |
| ENSE00003482861 | 109574809 | 109574900 |
| ENSE00003485323 | 109581395 | 109581550 |
| ENSE00003636969 | 109596426 | 109598125 |
| ENSE00003672992 | 109579802 | 109579946 |
| ENSE00003673608 | 109575998 | 109576145 |
| ENSE00003969905 | 109595028 | 109595181 |
| ENSE00003969906 | 109586754 | 109586799 |
| ENSE00003969907 | 109591241 | 109591357 |
| ENSE00003969912 | 109590771 | 109590861 |
Expression profiles
Bgee: expression breadth ubiquitous, 271 present calls, max score 95.59.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 7.8954 / max 47.7928, expressed in 1735 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 127949 | 7.8954 | 1735 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lower esophagus mucosa | UBERON:0035834 | 95.59 | gold quality |
| right lobe of liver | UBERON:0001114 | 94.15 | gold quality |
| metanephros cortex | UBERON:0010533 | 93.89 | gold quality |
| adrenal tissue | UBERON:0018303 | 93.19 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 92.66 | gold quality |
| esophagus mucosa | UBERON:0002469 | 92.59 | gold quality |
| pancreatic ductal cell | CL:0002079 | 91.51 | silver quality |
| spinal cord | UBERON:0002240 | 91.04 | gold quality |
| skin of leg | UBERON:0001511 | 90.98 | gold quality |
| skin of abdomen | UBERON:0001416 | 90.69 | gold quality |
| left testis | UBERON:0004533 | 90.55 | gold quality |
| right testis | UBERON:0004534 | 90.53 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 90.33 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 90.09 | gold quality |
| right adrenal gland | UBERON:0001233 | 89.72 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 89.46 | gold quality |
| tibialis anterior | UBERON:0001385 | 89.18 | silver quality |
| left adrenal gland | UBERON:0001234 | 89.08 | gold quality |
| ileal mucosa | UBERON:0000331 | 89.04 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 88.89 | gold quality |
| adrenal cortex | UBERON:0001235 | 88.67 | gold quality |
| testis | UBERON:0000473 | 88.62 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 88.54 | gold quality |
| adrenal gland | UBERON:0002369 | 88.46 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 88.42 | gold quality |
| zone of skin | UBERON:0000014 | 88.42 | gold quality |
| olfactory bulb | UBERON:0002264 | 88.37 | silver quality |
| type B pancreatic cell | CL:0000169 | 88.29 | gold quality |
| liver | UBERON:0002107 | 88.25 | gold quality |
| tongue squamous epithelium | UBERON:0006919 | 88.00 | silver quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-112 | yes | 872.05 |
| E-ANND-3 | yes | 10.68 |
| E-ENAD-17 | no | 167.26 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): SREBF1, SREBF2
miRNA regulators (miRDB)
26 targeting MVK, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4776-3P | 100.00 | 68.73 | 1340 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-106A-5P | 99.90 | 73.94 | 2683 |
| HSA-MIR-345-3P | 99.89 | 70.23 | 1421 |
| HSA-MIR-17-5P | 99.89 | 73.83 | 2665 |
| HSA-MIR-106B-5P | 99.88 | 74.72 | 2795 |
| HSA-MIR-20A-5P | 99.88 | 74.76 | 2769 |
| HSA-MIR-20B-5P | 99.88 | 74.01 | 2621 |
| HSA-MIR-519D-3P | 99.88 | 73.97 | 2607 |
| HSA-MIR-93-5P | 99.88 | 73.98 | 2606 |
| HSA-MIR-526B-3P | 99.88 | 74.06 | 2587 |
| HSA-MIR-6752-3P | 99.72 | 66.71 | 1587 |
| HSA-MIR-4530 | 99.69 | 66.47 | 1509 |
| HSA-MIR-516A-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-516B-3P | 99.46 | 67.96 | 1378 |
| HSA-MIR-10524-5P | 99.05 | 66.08 | 963 |
| HSA-MIR-6776-5P | 98.54 | 67.43 | 1304 |
| HSA-MIR-6831-5P | 98.26 | 67.20 | 990 |
| HSA-MIR-6747-3P | 97.73 | 64.84 | 1596 |
| HSA-MIR-3927-3P | 97.68 | 66.76 | 892 |
| HSA-MIR-1291 | 96.28 | 65.89 | 1224 |
| HSA-MIR-6800-3P | 96.15 | 65.16 | 461 |
| HSA-MIR-920 | 95.97 | 63.95 | 811 |
| HSA-MIR-6726-5P | 95.97 | 63.72 | 841 |
| HSA-MIR-4300 | 95.85 | 64.56 | 1003 |
| HSA-MIR-5591-5P | 95.85 | 64.76 | 1002 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 84.2% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Mutations of MVK found in hyper-IgD and periodic fever syndrome patients affect the stability and/or maturation of MVK in vitro in a temperature-sensitive manner and may explain the chain of events leading to episodic inflammation and fever. (PMID:12444096)
- Isoprenoid and cholesterol biosynthesis still occurs in cells from mevalonate kinase-deficient patients. (PMID:12477733)
- Carrier frequency of 1:65 overestimates disease frequency, probably due to a reduced penetrance of V377I homozygosity. (PMID:12634869)
- The subcellular localisation of human mevalonate kinase (MK) use a variety of biochemical and microscopical techniques. (PMID:14730012)
- LH receptor mRNA-binding protein (LRBP) is a a novel trans-factor for luteinizing hormone receptor mRNA from ovary. (PMID:14749336)
- Mevalonic aciduria, with psychomotor retardation, cerebellar ataxia, recurrent fever, and death in early childhood, and hyper-immunoglobulin D syndrome, with recurrent fever attacks without neurologic symptoms, are caused by mevalonate kinase deficiency (PMID:15037710)
- Mutations in the coding region of the MVK gene were detected in 6 hyperimmunoglobulinemia D patients, and the most common mutation was V377I. (PMID:15188372)
- Several hydrophobic amino acid side chains are positioned near the polyisoprenoid chain of FSP & their functional significance has been evaluated in mutagenesis experiments with human MK, which exhibits highest reported sensitivity to feedback inhibition. (PMID:18302342)
- an intact active site of MVK is required for its binding to rat LHR mRNA and for its translational suppressor function (PMID:18494797)
- homozygosity for the mutation of the MVK gene has been reported in an Asian patient, and indicated a need for differentiation. (PMID:18941711)
- For the SNPs KCTD10_i5642G–>C and MVK_S52NG–>A, homozygotes for the major alleles (G) had lower HDL-cholesterol concentrations than did carriers of the minor alleles (P = 0.005 and P = 0.019, respectively). (PMID:19605566)
- These data suggest MMAB is the most likely gene influencing high-density lipoprotein-cholesterol levels at MMAB-MVK locus. (PMID:20159775)
- A novel missense mutation in mevalonate kinase (Tyr116His) is associated with mevalonate kinase deficiency and dyserythropoietic anemia. (PMID:20194276)
- Report mevalonate kinase deficiency compromized fiberoblast geranylgeranylation of RhoA and Rac1. (PMID:20814828)
- Results support that deleterious copy number alterations in MVK, NLRP3 and TNFRSF1A are rare or absent from the mutational spectrum of hereditary recurrent fevers. (PMID:21124859)
- data show that LH-regulated ERK1/2 signaling is required for the LRBP-mediated down-regulation of LHR mRNA (PMID:21147848)
- The farnesyltransferase inhibitors tipifarnib and lonafarnib inhibit cytokines secretion in a cellular model of mevalonate kinase deficiency. (PMID:21430599)
- Significant liver disease in a patient with Y116H mutation in the MVK gene. (PMID:21548022)
- hyperimmunoglobulinemia D and periodic fever syndrome (HIDS) patients carried 11 different MVK mutations mostly in compound heterozygosity; the most frequent mutation was p.Val377Ile; in Germany, the incidence of HIDS is very low (PMID:22038276)
- Novel mutations of MVK gene in Japanese family members affected with hyperimmunoglobulinemia D and periodic fever syndrome. This is the first case in which exon skipping mutation of the MVK gene has been certainly identified at the genomic DNA level. (PMID:22159817)
- This atypical presentation of MA suggests that it should be included in the differential diagnosis of unclassified patients with psychomotor retardation, failure to thrive or ataxia, even in the absence of febrile episodes. (PMID:22271696)
- MVK has a role in regulating calcium-induced keratinocyte differentiation and could protect keratinocytes from apoptosis induced by type A ultraviolet radiation. (PMID:22983302)
- Results identify a novel frameshift mutation in this gene implicated in disseminated superficial actinic porokeratosis in 4 Chinese families (PMID:23834120)
- study reportstwo novel mutations of the MVK gene in Chinese patients with disseminated superficial actinic porokeratosis (PMID:24008101)
- These results suggest that hCG-induced down-regulation of LHR mRNA expression is mediated by activation of cAMP/PKA/ERK pathways to increase miR-122 expression, which then increases LRBP expression through the activation of SREBPs. (PMID:24064360)
- In the current article, we add another phenotype to the spectrum of diverging disorders associated with mutations in MVK. (PMID:24084495)
- Results suggest that the effects of MVK mutations in Behcet’s disease could be an additional genetic susceptibility factor for the patients with neurological involvement. (PMID:24411001)
- Report a novel missense mutation in mevalonate kinase responsible for disseminated superficial actinic porokeratosis. (PMID:24551296)
- The testing for the Hyper IgD Syndrome was positive for the pV377I/c.1129 G>A heterozygosity in a patient with periodic fever. (PMID:24708999)
- mutations are responsible for porokeratosis of Mibelli development in Chinese families (PMID:24781643)
- results from this 4 generation family imply a causal relationship between MVK and perokeratosis. (PMID:25053464)
- study reports a novel mutation of the MVK gene in Chinese patients with disseminated superficial actinic porokeratosis (DSAP); result confirms the involvement of MVK gene in DSAP (PMID:25059119)
- Wild-type MK and the variant V261A, which is associated with HIDS, were recombinantly expressed in Escherichia coli. Enzyme activity was determined by formation of MVAP over time (PMID:25982894)
- predictive analysis of mutations in MVK to predict disease severity (PMID:26420133)
- this study extends the mutation spectrum of MVK; MVK protein stability and correct folding might be the molecular mechanism causing disseminated superficial actinic porokeratosis (PMID:26794421)
- In a cohort of mevalonate kinase deficiency patients, ninety-six (84%) of the patients harbored at least 1 p.V377I mutation, 14 (12%) of which were homozygous. The second most frequent mutation was p.I268T, occurring in 29 (25%) of the patients. None of them were p.I268T homozygous. A p.C152Y mutation was found in 1 patient. (PMID:27213830)
- These findings suggest that rs11066782 in KCTD10, rs11613718 in KCTD10 and rs11067233 in MMAB may contribute to the susceptibility of coronary heart disease by altering plasma HDL-C levels in Han Chinese. (PMID:27716295)
- Mevalonate kinase deficiency (MKD) can be associated with retinitis pigmentosa (RP) and early onset cataract. Most MKD patients developing RP carry the (p.Ala334Thr) mutation. (PMID:28095071)
- Case Report: homozygous missense p.Cys161Arg in MVK was identified in family members with familial Mediterranean fever. (PMID:29148404)
- this study demonstrates mevalonate kinase deficiency presenting as recurrent rectal abscesses and perianal fistulae (PMID:29290516)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mvk | ENSDARG00000004130 |
| mus_musculus | Mvk | ENSMUSG00000041939 |
| rattus_norvegicus | Mvk | ENSRNOG00000049604 |
| drosophila_melanogaster | Mvk | FBGN0061359 |
| caenorhabditis_elegans | WBGENE00021534 |
Paralogs (2): GALK1 (ENSG00000108479), GALK2 (ENSG00000156958)
Protein
Protein identifiers
Mevalonate kinase — Q03426 (reviewed: Q03426)
All UniProt accessions (10): A0A0B4J236, A0A1B0GWC2, A0A8V8TMD0, B2RDU6, Q03426, F5GXC0, F5H092, F5H163, F5H368, F5H8H2
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the phosphorylation of mevalonate to mevalonate 5-phosphate, a key step in isoprenoid and cholesterol biosynthesis.
Subunit / interactions. Homodimer.
Subcellular location. Cytoplasm. Peroxisome.
Disease relevance. Mevalonic aciduria (MEVA) [MIM:610377] Accumulation of mevalonic acid which causes a variety of symptoms such as psychomotor retardation, dysmorphic features, cataracts, hepatosplenomegaly, lymphadenopathy, anemia, hypotonia, myopathy, and ataxia. The disease is caused by variants affecting the gene represented in this entry. Hyperimmunoglobulinemia D and periodic fever syndrome (HIDS) [MIM:260920] Autosomal recessive disease characterized by recurrent episodes of unexplained high fever associated with skin rash, diarrhea, adenopathy (swollen, tender lymph nodes), arthralgias and/or arthritis. Concentration of IgD, and often IgA, are above normal. The disease is caused by variants affecting the gene represented in this entry. Porokeratosis 3, multiple types (POROK3) [MIM:175900] A form of porokeratosis, a disorder of faulty keratinization characterized by one or more atrophic patches surrounded by a distinctive hyperkeratotic ridgelike border called the cornoid lamella. The keratotic lesions can progress to overt cutaneous neoplasms, typically squamous cell carcinomas. Multiple clinical variants of porokeratosis are recognized, including porokeratosis of Mibelli, linear porokeratosis, disseminated superficial actinic porokeratosis, palmoplantar porokeratosis, and punctate porokeratosis. Different clinical presentations can be observed among members of the same family. Individuals expressing more than one variant have also been reported. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Farnesyl pyrophosphate and geranyl pyrophosphate inhibit mevalonate kinase activity by binding competitively at the ATP-binding sites.
Pathway. Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via mevalonate pathway; isopentenyl diphosphate from (R)-mevalonate: step 1/3.
Similarity. Belongs to the GHMP kinase family. Mevalonate kinase subfamily.
RefSeq proteins (8): NP_000422, NP_001107657, NP_001288111, NP_001401440, NP_001401441, NP_001401442, NP_001401443, NP_001401444 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006203 | GHMP_knse_ATP-bd_CS | Conserved_site |
| IPR006204 | GHMP_kinase_N_dom | Domain |
| IPR006205 | Mev_gal_kin | Family |
| IPR013750 | GHMP_kinase_C_dom | Domain |
| IPR014721 | Ribsml_uS5_D2-typ_fold_subgr | Homologous_superfamily |
| IPR020568 | Ribosomal_Su5_D2-typ_SF | Homologous_superfamily |
| IPR036554 | GHMP_kinase_C_sf | Homologous_superfamily |
Pfam: PF00288, PF08544
Enzyme classification (BRENDA):
- EC 2.7.1.36 — mevalonate kinase (BRENDA: 38 organisms, 106 substrates, 72 inhibitors, 158 Km, 13 kcat entries)
Substrate kinetics (BRENDA)
36 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| ATP | 0.025–7.4 | 68 |
| (R)-MEVALONATE | 0.0324–2.16 | 25 |
| MEVALONATE | 0.012–9.28 | 20 |
| (R,S)-MEVALONATE | 0.035–2.88 | 5 |
| (RS)MEVALONATE | 0.019–0.27 | 4 |
| DL-MEVALONATE | 0.13–5.1 | 3 |
| (R,S)MEVALONATE | 0.024–0.167 | 2 |
| RS-MEVALONATE | 0.0426–0.046 | 2 |
| (RS)-MEVALONATE | 0.27 | 1 |
| CA-ADENOSINE 5’-O-(2-THIO-(R)-TRIPHOSPHATE) | 0.6 | 1 |
| CA-ADENOSINE 5’-O-(2-THIO-(S)-TRIPHOSPHATE) | 0.14 | 1 |
| CD-ADENOSINE 5’-O-(1-THIO-(R)-TRIPHOSPHATE) | 0.22 | 1 |
| CD-ADENOSINE 5’-O-(1-THIO-(S)-TRIPHOSPHATE) | 0.28 | 1 |
| CD-ADENOSINE 5’-O-(2-THIO-(R)-TRIPHOSPHATE) | 0.059 | 1 |
| CD-ADENOSINE 5’-O-(2-THIO-(S)-TRIPHOSPHATE) | 0.46 | 1 |
Catalyzed reactions (Rhea), 1 shown:
- (R)-mevalonate + ATP = (R)-5-phosphomevalonate + ADP + H(+) (RHEA:17065)
UniProt features (93 total): sequence variant 37, strand 16, mutagenesis site 13, helix 13, binding site 6, turn 5, active site 2, chain 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2R3V | X-RAY DIFFRACTION | 2.5 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q03426-F1 | 92.31 | 0.79 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 146 (proton donor); 204 (proton acceptor)
Ligand- & substrate-binding residues (6): 13; 55; 135; 140–146; 146; 193
Mutagenesis-validated functional residues (13):
| Position | Phenotype |
|---|---|
| 19 | no change in protein stability. weak decrease in kinase activity. approximately 2-fold decrease in vmax. approximately 2 |
| 56 | no effect on kinase activity. approximately 4- and 5-fold decrease affinities for atp and mevalonate, respectively. |
| 104 | no effect on kinase activity. approximately 4-fold increase affinity for atp. normal affinity for mevalonate. |
| 145 | modest changes in km for atp. 20-fold increase in km for mevalonate. approximately 2-fold decrease in vmax. |
| 146 | modest changes in km for atp. 20-fold increase in km for mevalonate. 4000-fold decrease in vmax. |
| 149 | no effect on kinase activity. approximately 4- and 8-fold decrease affinities for atp and mevalonate, respectively. |
| 193 | no change in protein stability. decreased kinase activity. approximately 50-fold decrease in vmax. approximately 20- and |
| 196 | no effect on kinase activity. approximately 2- and 3-fold decrease affinities for atp and mevalonate, respectively. |
| 201 | modest changes in km for atp. 100-fold increase in km for mevalonate. approximately 2-fold increase in vmax. |
| 204 | no change in protein stability. loss of kinase activity. normal affinities for atp and mevalonate. |
| 243 | modest changes in km for atp. 40-fold increase in km for mevalonate. approximately 2-fold decrease in vmax. |
| 296 | no change in protein stability. no effect on kinase activity. |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-2426168 | Activation of gene expression by SREBF (SREBP) |
| R-HSA-9969896 | Lanosterol biosynthesis |
| R-HSA-191273 | Cholesterol biosynthesis |
| R-HSA-1430728 | Metabolism |
| R-HSA-1655829 | Regulation of cholesterol biosynthesis by SREBP (SREBF) |
| R-HSA-556833 | Metabolism of lipids |
| R-HSA-8957322 | Metabolism of steroids |
MSigDB gene sets: 428 (showing top):
GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_INFLAMMATORY_RESPONSE, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, ACEVEDO_NORMAL_TISSUE_ADJACENT_TO_LIVER_TUMOR_DN, SHAFFER_IRF4_TARGETS_IN_ACTIVATED_B_LYMPHOCYTE, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_ACETYL_COA_METABOLIC_PROCESS, CHANDRAN_METASTASIS_DN, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GCM_MYCL1, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_PHOSPHOLIPID_BIOSYNTHETIC_PROCESS, YOKOE_CANCER_TESTIS_ANTIGENS, GOBP_SMALL_MOLECULE_BIOSYNTHETIC_PROCESS, GCM_RING1
GO Biological Process (9): cholesterol biosynthetic process (GO:0006695), isoprenoid biosynthetic process (GO:0008299), isopentenyl diphosphate biosynthetic process, mevalonate pathway (GO:0019287), negative regulation of inflammatory response (GO:0050728), lipid metabolic process (GO:0006629), steroid biosynthetic process (GO:0006694), steroid metabolic process (GO:0008202), cholesterol metabolic process (GO:0008203), sterol biosynthetic process (GO:0016126)
GO Molecular Function (10): magnesium ion binding (GO:0000287), mevalonate kinase activity (GO:0004496), ATP binding (GO:0005524), identical protein binding (GO:0042802), nucleotide binding (GO:0000166), protein binding (GO:0005515), kinase activity (GO:0016301), transferase activity (GO:0016740), phosphotransferase activity, alcohol group as acceptor (GO:0016773), metal ion binding (GO:0046872)
GO Cellular Component (3): peroxisome (GO:0005777), cytosol (GO:0005829), cytoplasm (GO:0005737)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Metabolism of steroids | 2 |
| Regulation of cholesterol biosynthesis by SREBP (SREBF) | 1 |
| Cholesterol biosynthesis | 1 |
| Metabolism | 1 |
| Metabolism of lipids | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| lipid biosynthetic process | 2 |
| sterol metabolic process | 2 |
| transferase activity, transferring phosphorus-containing groups | 2 |
| cellular anatomical structure | 2 |
| cholesterol metabolic process | 1 |
| sterol biosynthetic process | 1 |
| secondary alcohol biosynthetic process | 1 |
| isoprenoid metabolic process | 1 |
| acetyl-CoA metabolic process | 1 |
| isopentenyl diphosphate biosynthetic process | 1 |
| inflammatory response | 1 |
| negative regulation of defense response | 1 |
| negative regulation of response to external stimulus | 1 |
| regulation of inflammatory response | 1 |
| primary metabolic process | 1 |
| steroid metabolic process | 1 |
| lipid metabolic process | 1 |
| secondary alcohol metabolic process | 1 |
| steroid biosynthetic process | 1 |
| metal ion binding | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| protein binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| cation binding | 1 |
| microbody | 1 |
| cytoplasm | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
3288 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MVK | HMGCR | P04035 | 965 |
| MVK | IGHD | P01880 | 958 |
| MVK | PMVK | Q15126 | 919 |
| MVK | MVD | P53602 | 913 |
| MVK | FDPS | P14324 | 871 |
| MVK | GGPS1 | O95749 | 853 |
| MVK | FDFT1 | P37268 | 843 |
| MVK | HMGCS1 | Q01581 | 841 |
| MVK | GALK1 | P51570 | 826 |
| MVK | IDI1 | Q13907 | 810 |
| MVK | SQLE | Q14534 | 809 |
| MVK | ACAT1 | P24752 | 794 |
| MVK | IDI2 | Q9BXS1 | 771 |
| MVK | HMGCS2 | P54868 | 732 |
| MVK | ACAT2 | Q9BWD1 | 731 |
IntAct
61 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MVK | MVK | psi-mi:“MI:0915”(physical association) | 0.880 |
| rep | POLA1 | psi-mi:“MI:0914”(association) | 0.670 |
| ANKRD49 | CSNK1E | psi-mi:“MI:0914”(association) | 0.640 |
| MVK | RNF141 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EWSR1 | MVK | psi-mi:“MI:0915”(physical association) | 0.550 |
| GGT5 | POTEI | psi-mi:“MI:0914”(association) | 0.530 |
| SPACA4 | GRN | psi-mi:“MI:0914”(association) | 0.530 |
| KLHL10 | HSPA8 | psi-mi:“MI:0914”(association) | 0.530 |
| KLHL10 | PXDNL | psi-mi:“MI:0914”(association) | 0.530 |
| NOTCH2 | ZNF316 | psi-mi:“MI:0914”(association) | 0.530 |
| POT1 | MVK | psi-mi:“MI:0915”(physical association) | 0.510 |
| MVK | LPCAT2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| TRIM13 | MVK | psi-mi:“MI:0915”(physical association) | 0.400 |
| MVK | TERF1 | psi-mi:“MI:0915”(physical association) | 0.370 |
| KHDRBS2 | SUPT5H | psi-mi:“MI:0914”(association) | 0.350 |
| KLHL10 | BCL2L11 | psi-mi:“MI:0914”(association) | 0.350 |
| SPACA4 | HSPA5 | psi-mi:“MI:0914”(association) | 0.350 |
| MVK | CCDC91 | psi-mi:“MI:0914”(association) | 0.350 |
| rep | VWA8 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (75): MVK (Two-hybrid), MVK (Affinity Capture-RNA), MVK (Affinity Capture-RNA), MVK (Affinity Capture-RNA), CCDC91 (Affinity Capture-MS), MVK (Two-hybrid), MVK (Affinity Capture-MS), MVK (Two-hybrid), MVK (Affinity Capture-Western), MVK (Co-fractionation), MVK (Affinity Capture-MS), CCDC91 (Affinity Capture-MS), MVK (Affinity Capture-MS), MVK (Affinity Capture-MS), TACC3 (Affinity Capture-MS)
ESM2 similar proteins: A0A6N3IN21, A3KCL7, A4IFH5, A7MBC0, A7MBI7, D3ZDK7, D3ZDM7, E1BNQ4, P09367, P10950, P11172, P13439, P17256, P20132, P24298, P25409, P31754, P46597, P50053, P97328, Q02974, Q03426, Q0VCW4, Q1JPD3, Q3B8E3, Q3TY86, Q3ZKN0, Q5BJJ5, Q5E9T8, Q5M7T9, Q5R514, Q5R824, Q5RD71, Q5RFE6, Q6PCB7, Q6SKR2, Q80W22, Q8CHP8, Q8CIM3, Q8HZJ0
Diamond homologs: A0A1D8PEL1, B6YST1, C5A7L8, C6A3T5, I1RPE5, O59291, P07277, P17256, P46086, Q03426, Q09780, Q4WP25, Q5E9T8, Q5JJC6, Q86AG7, Q8U0F3, Q9R008, Q9V187, A1R4F8, A5IQ47, A6QEE8, A6TYW9, A7WYP4, A7Z0G9, A8F913, B7HIL3, B7ISV5, C3N8M1, C3NM92, C5A784, O23461, O27995, P65180, P65181, P65182, Q2FJE7, Q2G0S8, Q2YVV0, Q4L3F2, Q50559
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
809 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 58 |
| Likely pathogenic | 38 |
| Uncertain significance | 258 |
| Likely benign | 264 |
| Benign | 53 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1071478 | NM_000431.4(MVK):c.605dup (p.Val203fs) | Pathogenic |
| 1075609 | NC_000012.11:g.(?110032813)(110034402_?)del | Pathogenic |
| 11928 | NM_000431.4(MVK):c.902A>C (p.Asn301Thr) | Pathogenic |
| 11930 | NM_000431.4(MVK):c.1000G>A (p.Ala334Thr) | Pathogenic |
| 11931 | NM_000431.4(MVK):c.59A>C (p.His20Pro) | Pathogenic |
| 11934 | NM_000431.4(MVK):c.928G>A (p.Val310Met) | Pathogenic |
| 11935 | NM_000431.4(MVK):c.16_34del (p.Leu6fs) | Pathogenic |
| 1454443 | NC_000012.11:g.(?110011228)(110017709_?)del | Pathogenic |
| 1460450 | NC_000012.11:g.(?110013783)(110013970_?)del | Pathogenic |
| 2024803 | NM_000431.4(MVK):c.1090_1091del (p.Gly364fs) | Pathogenic |
| 2090149 | NM_000431.4(MVK):c.671T>G (p.Leu224Ter) | Pathogenic |
| 2137420 | NM_000431.4(MVK):c.481_482del (p.Cys161fs) | Pathogenic |
| 2142782 | NM_000431.4(MVK):c.345dup (p.Tyr116fs) | Pathogenic |
| 217749 | NM_000431.4(MVK):c.1039+1G>A | Pathogenic |
| 2196384 | NM_000431.4(MVK):c.790dup (p.Leu264fs) | Pathogenic |
| 234379 | NM_000431.4(MVK):c.643C>T (p.Arg215Ter) | Pathogenic |
| 2423080 | NC_000012.11:g.(?110032813)(110034382_?)del | Pathogenic |
| 2635502 | NM_000431.4(MVK):c.560_561del (p.Lys187fs) | Pathogenic |
| 2921862 | NM_000431.4(MVK):c.621_630del (p.Ser208fs) | Pathogenic |
| 2925505 | NM_000431.4(MVK):c.1A>C (p.Met1Leu) | Pathogenic |
| 2925507 | NM_000431.4(MVK):c.395del (p.Val132fs) | Pathogenic |
| 2931188 | NM_000431.4(MVK):c.417del (p.Ala141fs) | Pathogenic |
| 2938110 | NM_000431.4(MVK):c.207_208del (p.Leu70fs) | Pathogenic |
| 2943228 | NM_000431.4(MVK):c.46_49del (p.Leu16fs) | Pathogenic |
| 2944926 | NM_000431.4(MVK):c.661_668dup (p.Leu224fs) | Pathogenic |
| 2947497 | NM_000431.4(MVK):c.976G>T (p.Gly326Ter) | Pathogenic |
| 2948422 | NM_000431.4(MVK):c.664del (p.Ser222fs) | Pathogenic |
| 2949233 | NM_000431.4(MVK):c.712A>T (p.Lys238Ter) | Pathogenic |
| 2952122 | NM_000431.4(MVK):c.629G>A (p.Trp210Ter) | Pathogenic |
| 2953001 | NM_000431.4(MVK):c.386_422del (p.Leu129fs) | Pathogenic |
SpliceAI
2655 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:109575993:TATA:T | acceptor_loss | 1.0000 |
| 12:109575995:TA:T | acceptor_loss | 1.0000 |
| 12:109575996:A:AC | acceptor_loss | 1.0000 |
| 12:109575997:GGTA:G | acceptor_gain | 1.0000 |
| 12:109576143:TGGGT:T | donor_loss | 1.0000 |
| 12:109576144:GG:G | donor_gain | 1.0000 |
| 12:109576145:GG:G | donor_gain | 1.0000 |
| 12:109576145:GGT:G | donor_loss | 1.0000 |
| 12:109576146:G:GA | donor_loss | 1.0000 |
| 12:109576147:TGAG:T | donor_loss | 1.0000 |
| 12:109576148:GAGTG:G | donor_loss | 1.0000 |
| 12:109576149:AGTG:A | donor_loss | 1.0000 |
| 12:109576408:GTATT:G | donor_gain | 1.0000 |
| 12:109576409:TATTT:T | donor_gain | 1.0000 |
| 12:109576410:ATTTA:A | donor_gain | 1.0000 |
| 12:109579794:T:TA | acceptor_gain | 1.0000 |
| 12:109591239:A:AG | acceptor_gain | 1.0000 |
| 12:109591240:G:GG | acceptor_gain | 1.0000 |
| 12:109591354:GGAA:G | donor_gain | 1.0000 |
| 12:109591355:G:T | donor_gain | 1.0000 |
| 12:109591355:GAA:G | donor_gain | 1.0000 |
| 12:109591355:GAAG:G | donor_gain | 1.0000 |
| 12:109591358:G:GG | donor_gain | 1.0000 |
| 12:109595022:CCCTA:C | acceptor_loss | 1.0000 |
| 12:109595023:CCTA:C | acceptor_loss | 1.0000 |
| 12:109595024:CTAG:C | acceptor_loss | 1.0000 |
| 12:109595025:TA:T | acceptor_loss | 1.0000 |
| 12:109595026:A:AG | acceptor_gain | 1.0000 |
| 12:109595027:G:A | acceptor_loss | 1.0000 |
| 12:109595027:G:GG | acceptor_gain | 1.0000 |
AlphaMissense
2529 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:109581459:A:C | S146R | 0.994 |
| 12:109581461:C:A | S146R | 0.994 |
| 12:109581461:C:G | S146R | 0.994 |
| 12:109586105:A:T | D204V | 0.994 |
| 12:109595127:A:C | S329R | 0.993 |
| 12:109595129:C:A | S329R | 0.993 |
| 12:109595129:C:G | S329R | 0.993 |
| 12:109586106:C:A | D204E | 0.991 |
| 12:109586106:C:G | D204E | 0.991 |
| 12:109574860:A:T | K13I | 0.990 |
| 12:109595132:G:C | K330N | 0.990 |
| 12:109595132:G:T | K330N | 0.990 |
| 12:109581479:T:G | C152W | 0.989 |
| 12:109586104:G:C | D204H | 0.989 |
| 12:109586105:A:C | D204A | 0.989 |
| 12:109574875:G:T | G18V | 0.988 |
| 12:109586116:A:C | S208R | 0.988 |
| 12:109586118:C:A | S208R | 0.988 |
| 12:109586118:C:G | S208R | 0.988 |
| 12:109574851:C:A | A10D | 0.986 |
| 12:109574875:G:A | G18E | 0.986 |
| 12:109574856:G:T | G12W | 0.985 |
| 12:109586059:G:C | A189P | 0.985 |
| 12:109574878:A:T | E19V | 0.984 |
| 12:109574861:A:C | K13N | 0.983 |
| 12:109574861:A:T | K13N | 0.983 |
| 12:109595130:A:G | K330E | 0.983 |
| 12:109595167:C:A | T342K | 0.983 |
| 12:109586109:T:A | N205K | 0.982 |
| 12:109586109:T:G | N205K | 0.982 |
dbSNP variants (sampled 300 via entrez): RS1000200580 (12:109573973 T>G), RS1000222029 (12:109584103 A>G), RS1000320589 (12:109580316 T>C), RS1000589004 (12:109573780 C>G), RS1000633668 (12:109580878 G>A), RS1000658658 (12:109579023 ACT>A), RS1000910135 (12:109579449 C>T), RS1000935242 (12:109573931 T>A,C), RS1001161330 (12:109590338 C>T), RS1001174803 (12:109585579 C>A), RS1001444364 (12:109590651 C>A,T), RS1001520216 (12:109596902 T>C), RS1001702767 (12:109572413 T>G), RS1001744610 (12:109585281 G>A), RS1001773022 (12:109580835 G>A)
Disease associations
OMIM: gene MIM:251170 | disease phenotypes: MIM:175900, MIM:260920, MIM:610377, MIM:251110, MIM:609273, MIM:605355
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| porokeratosis 3, disseminated superficial actinic type | Definitive | Autosomal dominant |
| mevalonic aciduria | Definitive | Autosomal recessive |
| hyperimmunoglobulinemia D with periodic fever | Definitive | Autosomal recessive |
| porokeratosis of Mibelli | Supportive | Autosomal dominant |
| disseminated superficial actinic porokeratosis | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mevalonate kinase deficiency | Definitive | AR |
Mondo (11): porokeratosis 3, disseminated superficial actinic type (MONDO:0008293), hyperimmunoglobulinemia D with periodic fever (MONDO:0009849), mevalonic aciduria (MONDO:0012481), autoinflammatory syndrome (MONDO:0019751), methylmalonic aciduria, cblB type (MONDO:0009614), inherited retinal dystrophy (MONDO:0019118), mevalonate kinase deficiency (MONDO:0017708), nemaline myopathy 6 (MONDO:0012237), nemaline myopathy 5 (MONDO:0011539), porokeratosis of Mibelli (MONDO:0019141), disseminated superficial actinic porokeratosis (MONDO:0019212)
Orphanet (9): Mevalonic aciduria (Orphanet:29), Hyperimmunoglobulinemia D with periodic fever (Orphanet:343), Autoinflammatory syndrome (Orphanet:93665), Vitamin B12-responsive methylmalonic acidemia (Orphanet:28), Vitamin B12-responsive methylmalonic acidemia type cblB (Orphanet:79311), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Mevalonate kinase deficiency (Orphanet:309025), Childhood-onset nemaline myopathy (Orphanet:171439), Amish nemaline myopathy (Orphanet:98902)
HPO phenotypes
100 total (30 of 100 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000155 | Oral ulcer |
| HP:0000239 | Large fontanelles |
| HP:0000252 | Microcephaly |
| HP:0000268 | Dolichocephaly |
| HP:0000325 | Triangular face |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000369 | Low-set ears |
| HP:0000430 | Underdeveloped nasal alae |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000518 | Cataract |
| HP:0000543 | Optic disc pallor |
| HP:0000592 | Blue sclerae |
| HP:0000639 | Nystagmus |
| HP:0000662 | Nyctalopia |
| HP:0000962 | Hyperkeratosis |
| HP:0000969 | Edema |
| HP:0000979 | Purpura |
| HP:0000988 | Skin rash |
| HP:0000989 | Pruritus |
| HP:0000992 | Cutaneous photosensitivity |
| HP:0001025 | Urticaria |
| HP:0001036 | Parakeratosis |
| HP:0001063 | Acrocyanosis |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
GWAS associations
26 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000135_3 | HDL cholesterol | 3.000000e-08 |
| GCST000290_10 | HDL cholesterol | 1.000000e-10 |
| GCST000755_40 | HDL cholesterol | 7.000000e-15 |
| GCST000805_11 | HDL cholesterol | 3.000000e-06 |
| GCST002223_18 | HDL cholesterol | 2.000000e-13 |
| GCST002899_13 | HDL cholesterol | 9.000000e-10 |
| GCST004232_15 | HDL cholesterol levels | 8.000000e-24 |
| GCST005974_9 | Neutrophil count | 6.000000e-09 |
| GCST005999_21 | Aspartate aminotransferase levels | 3.000000e-08 |
| GCST006005_19 | High density lipoprotein cholesterol levels | 5.000000e-18 |
| GCST006611_51 | HDL cholesterol | 8.000000e-24 |
| GCST006804_187 | Red cell distribution width | 3.000000e-08 |
| GCST010134_6 | Non-oily fish consumption | 6.000000e-11 |
| GCST010135_11 | Oily fish consumption | 6.000000e-11 |
| GCST010135_3 | Oily fish consumption | 7.000000e-17 |
| GCST010140_3 | Pork consumption | 6.000000e-11 |
| GCST010140_47 | Pork consumption | 7.000000e-17 |
| GCST010142_62 | Fish- and plant-related diet | 4.000000e-13 |
| GCST010142_83 | Fish- and plant-related diet | 4.000000e-08 |
| GCST010142_87 | Fish- and plant-related diet | 2.000000e-19 |
| GCST010142_94 | Fish- and plant-related diet | 5.000000e-13 |
| GCST010204_40 | Low density lipoprotein cholesterol levels | 3.000000e-08 |
| GCST012020_189 | Serum metabolite levels | 2.000000e-11 |
| GCST012021_114 | Serum metabolite levels | 2.000000e-11 |
| GCST90002395_140 | Mean platelet volume | 1.000000e-10 |
| GCST90014268_27 | Cataracts | 1.000000e-11 |
EFO canonical traits (6, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004612 | high density lipoprotein cholesterol measurement |
| EFO:0004833 | neutrophil count |
| EFO:0004736 | aspartate aminotransferase measurement |
| EFO:0009188 | Red cell distribution width |
| EFO:0008111 | diet measurement |
| EFO:0004611 | low density lipoprotein cholesterol measurement |
MeSH disease descriptors (5)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D054078 | Mevalonate Kinase Deficiency | C10.228.140.163.100.593; C15.378.147.542.319; C16.320.382.750; C16.320.565.189.593; C16.320.565.663.430; C18.452.132.100.593; C18.452.648.189.593; C18.452.648.663.430; C20.683.460.319 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| C538397 | Nemaline myopathy 5 (supp.) | |
| C538398 | Nemaline myopathy 6 (supp.) | |
| C536339 | Porokeratosis, disseminated superficial actinic 1 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs10161126 | Efficacy | 3 | alendronate | Bone Diseases |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs10161126 | MVK | 3 | 3.25 | 1 | alendronate |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Lanosterol biosynthesis pathway
Most potent curated ligand interactions (9 total), top 9:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| farnesyl thiodiphosphate | Inhibition | 7.54 | pKi |
| trans,trans-farnesyl diphosphate | Feedback inhibition | 7.47 | pKi |
| geranylgeranyl diphosphate | Feedback inhibition | 7.23 | pKi |
| geranyl diphosphate | Feedback inhibition | 6.94 | pKi |
| isopentenyl diphosphate | Feedback inhibition | 4.8 | pKi |
| dimethylallyl diphosphate | Competitive | 4.7 | pKi |
| farnesol | Competitive | 4.14 | pKi |
| dolichol phosphate | Competitive | 4.08 | pKi |
| (RS)-5-diphosphomevalonate | Feedback inhibition | 3.74 | pIC50 |
CTD chemical–gene interactions
85 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| fatostatin | increases response to substance, affects binding, decreases reaction, increases reaction, increases expression (+1 more) | 5 |
| sodium arsenite | affects cotreatment, decreases expression, increases abundance, increases expression | 4 |
| Benzo(a)pyrene | decreases expression, decreases methylation | 4 |
| Aflatoxin B1 | affects expression, decreases expression, decreases methylation | 4 |
| geranylgeranyl pyrophosphate | decreases reaction, increases hydrolysis, increases phosphorylation, decreases activity, decreases chemical synthesis | 2 |
| farnesyl pyrophosphate | increases hydrolysis, increases phosphorylation, decreases activity, decreases chemical synthesis, decreases reaction | 2 |
| geranylgeraniol | increases reaction, increases activity, decreases reaction, increases response to substance, increases expression (+1 more) | 2 |
| perfluorooctane sulfonic acid | decreases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Farnesol | increases hydrolysis, increases phosphorylation, decreases activity, decreases reaction, increases response to substance (+1 more) | 2 |
| Tretinoin | increases expression, affects cotreatment, decreases expression | 2 |
| 22-hydroxycholesterol | decreases expression | 1 |
| isopentenyl pyrophosphate | decreases reaction, increases hydrolysis, increases phosphorylation, decreases activity | 1 |
| methyleugenol | decreases expression | 1 |
| deoxynivalenol | decreases expression | 1 |
| geraniol | decreases reaction, increases response to substance, increases expression | 1 |
| sodium arsenate | increases expression | 1 |
| trichostatin A | decreases expression | 1 |
| 2,4,5,2’,4’,5’-hexachlorobiphenyl | affects expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sulforaphane | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| dolichol monophosphate | decreases reaction, increases hydrolysis, increases phosphorylation, decreases activity | 1 |
| 3,3-dimethylallyl pyrophosphate | decreases activity, decreases reaction, increases hydrolysis, increases phosphorylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 4-hydroxy-equilenin | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
Clinical trials (associated diseases)
51 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04224207 | PHASE3 | COMPLETED | Management of Retinitis Pigmentosa by Mesenchymal Stem Cells by Wharton’s Jelly Derived Mesenchymal Stem Cells |
| NCT07082855 | PHASE3 | NOT_YET_RECRUITING | A Multicenter, Randomized, Double-Blind, Controlled Clinical Study of Minocycline for the Treatment of Retinitis Pigmentosa |
| NCT00442182 | PHASE2 | UNKNOWN | The Efficacy and Safety of ITF2357 in AIS |
| NCT03763227 | PHASE2 | COMPLETED | Intravitreal Ranibizumab (Lucentis®) in the Treatment of Non-leaking Macular Cysts in Retinal Dystrophy |
| NCT04068207 | PHASE2 | COMPLETED | Minocycline Treatment in Retinitis Pigmentosa |
| NCT04945772 | PHASE2 | COMPLETED | Efficacy and Safety of MCO-010 Optogenetic Therapy in Adults With Retinitis Pigmentosa [RESTORE] |
| NCT01303380 | PHASE2 | COMPLETED | Canakinumab in Patients With Active Hyper-IgD Syndrome |
| NCT05902962 | PHASE1 | COMPLETED | SAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects |
| NCT06319872 | PHASE1 | RECRUITING | The Effects of Disulfiram (Antabuse®) on Visual Acuity in Patients With Retinal Degeneration |
| NCT06455826 | PHASE1 | COMPLETED | MAD of IVT VP-001 in PRPF31 Mutation-Associated Retinal Dystrophy Subjects (Wallaby) |
| NCT00260299 | Not specified | TERMINATED | Dietary Cholesterol and Defects in Cholesterol Synthesis in Mevalonate Kinase Deficiency |
| NCT05292768 | Not specified | NOT_YET_RECRUITING | Are Mast Cells Involved in Autoinflammatory Diseases |
| NCT01568736 | Not specified | WITHDRAWN | B7 Coreceptor Molecules in Hyper IgD Syndrome Form of Mevalonate Kinase Deficiency |
| NCT06838143 | Not specified | RECRUITING | Ilaris NIS in Korea |
| NCT00887939 | Not specified | COMPLETED | Pathogenesis of Physical Induced Urticarial Syndromes |
| NCT03510442 | Not specified | RECRUITING | Natural History, Genetics, and Pathophysiology of Systemic Juvenile Idiopathic Arthritis, Adult-Onset Still’s Disease, and Related Conditions |
| NCT06248957 | Not specified | RECRUITING | SYSTEMS-LEVEL ANALYSES OF IMMUNE DYSREGULATION |
| NCT04855045 | PHASE2/PHASE3 | UNKNOWN | An Open-label, Dose Escalation and Double-masked, Randomized, Controlled Trial Evaluating Safety and Tolerability of Sepofarsen in Children (<8 Years of Age) With LCA10 Caused by Mutations in the CEP290 Gene. |
| NCT03872479 | PHASE1/PHASE2 | UNKNOWN | Single Ascending Dose Study in Participants With LCA10 |
| NCT04123626 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Safety and Tolerability of QR-1123 in Subjects With Autosomal Dominant Retinitis Pigmentosa Due to the P23H Mutation in the RHO Gene |
| NCT04545736 | PHASE1/PHASE2 | RECRUITING | Oral Metformin for Treatment of ABCA4 Retinopathy |
| NCT06212297 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Fellow-eye Study (FE) of LX101 in Subjects With Inherited Retinal Dystrophy |
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Related Atlas pages
- Associated diseases: porokeratosis 3, disseminated superficial actinic type, mevalonic aciduria, hyperimmunoglobulinemia D with periodic fever, porokeratosis of Mibelli, disseminated superficial actinic porokeratosis, mevalonate kinase deficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autoinflammatory syndrome, disseminated superficial actinic porokeratosis, hyperimmunoglobulinemia D with periodic fever, methylmalonic aciduria, cblB type, mevalonate kinase deficiency, mevalonic aciduria, nemaline myopathy 5, nemaline myopathy 6, porokeratosis 3, disseminated superficial actinic type, porokeratosis of Mibelli