MYCL
gene geneOn this page
Also known as LMYCbHLHe38
Summary
MYCL (MYCL proto-oncogene, bHLH transcription factor, HGNC:7555) is a protein-coding gene on chromosome 1p34.2, encoding Protein L-Myc (P12524). In precision oncology, MYCL EXPRESSION confers sensitivity to I-BET151 + JQ1 in Multiple Myeloma (CIViC Level D).
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of inner ear auditory receptor cell differentiation. Located in chromosome and nucleoplasm.
Source: NCBI Gene 4610 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 47 total
- Precision-oncology evidence (CIViC): 1 curated variant–drug association
- MANE Select transcript:
NM_001033081
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7555 |
| Approved symbol | MYCL |
| Name | MYCL proto-oncogene, bHLH transcription factor |
| Location | 1p34.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LMYC, bHLHe38 |
| Ensembl gene | ENSG00000116990 |
| Ensembl biotype | protein_coding |
| OMIM | 164850 |
| Entrez | 4610 |
Gene structure
Transcript identifiers
Ensembl transcripts: 4 — 4 protein_coding
ENST00000372815, ENST00000372816, ENST00000397332, ENST00000450953
RefSeq mRNA: 3 — MANE Select: NM_001033081
NM_001033081, NM_001033082, NM_005376
CCDS: CCDS30682, CCDS44117, CCDS53300
Canonical transcript exons
ENST00000372816 — 2 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001458727 | 39900939 | 39901917 |
| ENSE00001936518 | 39895428 | 39897970 |
Expression profiles
Bgee: expression breadth ubiquitous, 201 present calls, max score 90.19.
FANTOM5 (CAGE): breadth broad, TPM avg 4.4829 / max 454.5918, expressed in 899 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 11888 | 2.6892 | 752 |
| 11889 | 1.3620 | 447 |
| 11890 | 0.3885 | 218 |
| 11887 | 0.0432 | 13 |
Top tissues by expression
279 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| monocyte | CL:0000576 | 90.19 | gold quality |
| mononuclear cell | CL:0000842 | 90.00 | gold quality |
| leukocyte | CL:0000738 | 89.92 | gold quality |
| skin of leg | UBERON:0001511 | 88.56 | gold quality |
| epithelium of esophagus | UBERON:0001976 | 88.38 | gold quality |
| skin of abdomen | UBERON:0001416 | 88.27 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 88.10 | gold quality |
| upper leg skin | UBERON:0004262 | 87.58 | gold quality |
| zone of skin | UBERON:0000014 | 87.32 | gold quality |
| granulocyte | CL:0000094 | 85.87 | gold quality |
| body of pancreas | UBERON:0001150 | 85.79 | gold quality |
| mucosa of urinary bladder | UBERON:0001259 | 85.60 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.00 | gold quality |
| esophagus mucosa | UBERON:0002469 | 83.93 | gold quality |
| gingiva | UBERON:0001828 | 83.61 | gold quality |
| gingival epithelium | UBERON:0001949 | 82.77 | gold quality |
| upper arm skin | UBERON:0004263 | 82.15 | silver quality |
| lower esophagus mucosa | UBERON:0035834 | 81.25 | gold quality |
| squamous epithelium | UBERON:0006914 | 81.07 | gold quality |
| cortical plate | UBERON:0005343 | 80.84 | gold quality |
| skin of hip | UBERON:0001554 | 80.34 | gold quality |
| ganglionic eminence | UBERON:0004023 | 79.91 | gold quality |
| urinary bladder | UBERON:0001255 | 79.70 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 78.87 | gold quality |
| ileal mucosa | UBERON:0000331 | 78.38 | gold quality |
| pancreas | UBERON:0001264 | 78.35 | gold quality |
| oral cavity | UBERON:0000167 | 77.73 | gold quality |
| epithelium of bronchus | UBERON:0002031 | 77.13 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 76.83 | gold quality |
| bronchial epithelial cell | CL:0002328 | 76.45 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.97 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
2 targets.
| Target | Regulation |
|---|---|
| KCNQ4 | Repression |
| RLF |
Upstream regulators (CollecTRI, top): E2F4, GLI1, MYC, MYF5, MYOD1
miRNA regulators (miRDB)
81 targeting MYCL, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-LET-7C-3P | 99.95 | 73.42 | 2862 |
| HSA-MIR-539-5P | 99.93 | 70.30 | 2855 |
| HSA-MIR-338-5P | 99.92 | 72.34 | 2951 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-3180-5P | 99.82 | 69.12 | 2422 |
| HSA-MIR-6739-5P | 99.80 | 67.87 | 2806 |
| HSA-MIR-4668-5P | 99.79 | 70.58 | 3782 |
| HSA-MIR-448 | 99.79 | 72.37 | 2103 |
| HSA-MIR-548AJ-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548F-5P | 99.78 | 71.02 | 3093 |
| HSA-MIR-548G-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-548X-5P | 99.78 | 71.12 | 3085 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
| HSA-MIR-623 | 99.76 | 68.16 | 1170 |
| HSA-MIR-6733-5P | 99.74 | 67.94 | 2759 |
| HSA-MIR-3660 | 99.68 | 67.33 | 1149 |
| HSA-MIR-4526 | 99.68 | 67.07 | 1136 |
Literature-anchored findings (GeneRIF, showing 19)
- L-myc polymorphism may affect the induction of lung cancer by smoking (PMID:11802801)
- L-myc proto oncogene RFLP is associated with lung adenocarcinoma (PMID:11836605)
- Allelic deletions of L-myc in urine from bladder cancer patients (PMID:11956626)
- MYCL1, FHIT, SPARC, p16(INK4) and TP53 genes associated to lung cancer in idiopathic pulmoary fibrosis (PMID:12169206)
- Colorectal tumor patients whose tumors exhibited loss of heterozygosity at MYCL1 at chromosome 1p34 were likely to have a poor prognosis. (PMID:15014029)
- polymorphisms in the MYCL1 LD region affect lung cancer survival but that the functional element(s) may show population-specific patterns (PMID:17145094)
- L-myc gene polymorphism may have a role in risk of thyroid cancer (PMID:18566574)
- The L-myc gene polymorphism may help detect and prevent HNNMSC and LLC in susceptible individuals. It may also contribute to estimation of tumor behavior in patients with HNNMSC. (PMID:18645122)
- L-Myc may have a role in Merkel cell carcinoma pathogenesis (PMID:19020549)
- The results demonstrate that MYCL1 rs3134613 is associated with susceptibility to diffuse-type gastric cancer and with differentiation of gastric cancer. (PMID:20874233)
- MYCL1 is the target of hsa-miR-1827. A rs3134615 G>T SNP in the 3’-UTR altered regulation of MYCL1 expression. This SNP was associated with increased susceptibility to SCLC, possibly resulting from attenuated interaction with the miRNA hsa-miR-1827. (PMID:21676885)
- The polymorphism of H-ras and L-myc genes is not related to colorectal cancer risk, but there is a synergy between H-ras and L-myc polymorphisms in the development of rectal cancer. (PMID:22490849)
- Several tagging SNPs and haplotypes in TRIT1, MYCL1 and MFSD2A region are significantly associated with risk and clinicopathological features of gastric cancer in a Chinese population. (PMID:23349019)
- These results suggest that Mycl1 expression might be useful as a biomarker to predict prognosis and is a promising therapeutic target for patients with gastric cancer. (PMID:25528583)
- display of the influence of MYCL1 gene on invasion and migration phenotype of gastric cancer cells and a possible explanation from the aspect of structural alteration; results suggested that downregulation of MYCL1 may be a potential therapeutic strategy for gastric cancer (PMID:31025404)
- MYCL1 Amplification and Expression of L-Myc and c-Myc in Surgically Resected Small-Cell Lung Carcinoma. (PMID:34257619)
- MYCL promotes iPSC-like colony formation via MYC Box 0 and 2 domains. (PMID:34930932)
- MYCL promotes the progression of triplenegative breast cancer by activating the JAK/STAT3 pathway. (PMID:36177900)
- Comparative study on the mutation spectrum of L-MYC and C-MYC genes of blood cfDNA in patients with ovarian cancer and healthy females. (PMID:37827180)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | mycla | ENSDARG00000006003 |
| danio_rerio | myclb | ENSDARG00000034956 |
| mus_musculus | Mycl | ENSMUSG00000028654 |
| rattus_norvegicus | Mycl | ENSRNOG00000014259 |
Paralogs (2): MYCN (ENSG00000134323), MYC (ENSG00000136997)
Protein
Protein identifiers
Protein L-Myc — P12524 (reviewed: P12524)
Alternative names: Class E basic helix-loop-helix protein 38, Protein L-Myc-1, V-myc myelocytomatosis viral oncogene homolog
All UniProt accessions (2): E9PQS5, P12524
UniProt curated annotations — full annotation on UniProt →
Subunit / interactions. Efficient DNA binding requires dimerization with another bHLH protein. Binds DNA as a heterodimer with MAX.
Subcellular location. Nucleus.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P12524-1 | 1 | yes |
| P12524-2 | 2, Short | |
| P12524-3 | 3 |
RefSeq proteins (3): NP_001028253, NP_001028254, NP_005367 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002418 | Tscrpt_reg_Myc | Family |
| IPR011598 | bHLH_dom | Domain |
| IPR012682 | Tscrpt_reg_Myc_N | Domain |
| IPR036638 | HLH_DNA-bd_sf | Homologous_superfamily |
| IPR050433 | Myc_transcription_factors | Family |
Pfam: PF00010, PF01056
UniProt features (11 total): region of interest 4, splice variant 3, chain 1, domain 1, sequence variant 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P12524-F1 | 64.82 | 0.24 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 283 (showing top):
GOBP_EPITHELIUM_DEVELOPMENT, GGTGTGT_MIR329, GOBP_REGULATION_OF_EPIDERMIS_DEVELOPMENT, GOBP_NEUROGENESIS, CTATGCA_MIR153, USF_C, GCM_MYCL1, GOBP_REGULATION_OF_EPITHELIAL_CELL_DIFFERENTIATION, YORDY_RECIPROCAL_REGULATION_BY_ETS1_AND_SP100_UP, KRASNOSELSKAYA_ILF3_TARGETS_DN, CAIRO_HEPATOBLASTOMA_CLASSES_DN, GOBP_EPIDERMAL_CELL_DIFFERENTIATION, TCF4_Q5, RICKMAN_METASTASIS_DN, GOBP_EAR_DEVELOPMENT
GO Biological Process (3): regulation of transcription by RNA polymerase II (GO:0006357), regulation of inner ear auditory receptor cell differentiation (GO:0045607), regulation of DNA-templated transcription (GO:0006355)
GO Molecular Function (6): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA binding (GO:0003677), protein dimerization activity (GO:0046983), DNA-binding transcription factor activity (GO:0003700), protein binding (GO:0005515)
GO Cellular Component (4): chromatin (GO:0000785), nucleoplasm (GO:0005654), chromosome (GO:0005694), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| cellular anatomical structure | 2 |
| transcription by RNA polymerase II | 1 |
| inner ear auditory receptor cell differentiation | 1 |
| regulation of epidermal cell differentiation | 1 |
| regulation of inner ear receptor cell differentiation | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| nucleic acid binding | 1 |
| protein binding | 1 |
| transcription cis-regulatory region binding | 1 |
| transcription regulator activity | 1 |
| binding | 1 |
| chromosome | 1 |
| nuclear lumen | 1 |
| intracellular membraneless organelle | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
1338 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MYCL | MAX | P25912 | 851 |
| MYCL | EP400 | Q96L91 | 829 |
| MYCL | RLF | Q13129 | 804 |
| MYCL | LIN28A | Q9H9Z2 | 763 |
| MYCL | PPIE | Q9UNP9 | 729 |
| MYCL | KLF4 | P78338 | 714 |
| MYCL | SOX2 | P48431 | 696 |
| MYCL | GLIS1 | Q8NBF1 | 678 |
| MYCL | TP53 | P04637 | 635 |
| MYCL | POU5F1 | P31359 | 618 |
| MYCL | COL9A2 | Q14055 | 604 |
| MYCL | REEP5 | Q00765 | 580 |
| MYCL | WDR12 | Q9GZL7 | 573 |
| MYCL | MNT | Q99583 | 549 |
| MYCL | NANOG | Q9H9S0 | 547 |
IntAct
20 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MAX | E2F6 | psi-mi:“MI:0914”(association) | 0.710 |
| MYCL | CASK | psi-mi:“MI:0914”(association) | 0.350 |
| MYCL | KIF5C | psi-mi:“MI:0914”(association) | 0.350 |
| AKT1 | MYCL | psi-mi:“MI:2364”(proximity) | 0.270 |
| BRAF | MYCL | psi-mi:“MI:2364”(proximity) | 0.270 |
| FBXW7 | MYCL | psi-mi:“MI:2364”(proximity) | 0.270 |
| SMAD4 | MYCL | psi-mi:“MI:2364”(proximity) | 0.270 |
| MYCL | SMARCA4 | psi-mi:“MI:2364”(proximity) | 0.270 |
| SMARCA4 | MYCL | psi-mi:“MI:2364”(proximity) | 0.270 |
| MYCL | SPOP | psi-mi:“MI:2364”(proximity) | 0.270 |
| SPOP | MYCL | psi-mi:“MI:2364”(proximity) | 0.270 |
| PTPN11 | MYCL | psi-mi:“MI:2364”(proximity) | 0.270 |
| MYCL | PTEN | psi-mi:“MI:2364”(proximity) | 0.270 |
| MYCL | EGFR | psi-mi:“MI:2364”(proximity) | 0.270 |
BioGRID (87): KLC3 (Affinity Capture-MS), KLC4 (Affinity Capture-MS), KAT5 (Affinity Capture-MS), EPC1 (Affinity Capture-MS), ING3 (Affinity Capture-MS), EPC2 (Affinity Capture-MS), EP400 (Affinity Capture-MS), KIF5A (Affinity Capture-MS), TRRAP (Affinity Capture-MS), KLC2 (Affinity Capture-MS), MBTD1 (Affinity Capture-MS), VPS72 (Affinity Capture-MS), MEAF6 (Affinity Capture-MS), JAZF1 (Affinity Capture-MS), KIF5B (Affinity Capture-MS)
ESM2 similar proteins: A2RU30, D3YN49, D3ZDX9, D6RGH6, E9PV82, F1QN48, F1SLM8, F7BHS0, G3N1S4, H2M146, O35451, O94983, P10166, P12524, P12525, P20389, P23999, Q08B36, Q14140, Q14153, Q1HGE8, Q3UZ45, Q5JXC2, Q5M9G5, Q5R815, Q61817, Q64210, Q68DK7, Q6NSI3, Q6P1D7, Q6PB51, Q6PDM1, Q7TNY7, Q80Y50, Q8BP99, Q8BXQ8, Q8IY92, Q8K3I4, Q8K589, Q8R0W1
Diamond homologs: A1YG22, A2T7L5, B8XIA5, P01106, P01108, P01109, P01110, P03966, P04198, P06171, P06295, P06646, P09416, P0C0N8, P0C0N9, P10166, P10395, P12523, P12524, P15063, P15171, P18444, P20389, P21438, P22555, P23583, P23999, P24793, P26014, P28574, P49032, P49033, P49709, P52160, P52161, P52162, P52164, P61244, P61245, P68271
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MYCL | up-regulates | Proliferation | |
| MYCL | up-regulates | Differentiation |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
47 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 41 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
302 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:39897967:TTCT:T | acceptor_gain | 1.0000 |
| 1:39897969:CT:C | acceptor_gain | 1.0000 |
| 1:39897971:C:CC | acceptor_gain | 1.0000 |
| 1:39897976:C:CT | acceptor_gain | 1.0000 |
| 1:39897976:C:T | acceptor_gain | 1.0000 |
| 1:39897977:G:T | acceptor_gain | 1.0000 |
| 1:39897989:C:CT | acceptor_gain | 1.0000 |
| 1:39897990:A:T | acceptor_gain | 1.0000 |
| 1:39897966:ATTCT:A | acceptor_gain | 0.9900 |
| 1:39897970:TC:T | acceptor_loss | 0.9900 |
| 1:39897971:C:CA | acceptor_loss | 0.9900 |
| 1:39897972:T:C | acceptor_loss | 0.9900 |
| 1:39900933:CCTTA:C | donor_loss | 0.9900 |
| 1:39900934:CTTA:C | donor_loss | 0.9900 |
| 1:39900935:TTACC:T | donor_loss | 0.9900 |
| 1:39900936:TACCC:T | donor_loss | 0.9900 |
| 1:39900937:A:AC | donor_gain | 0.9900 |
| 1:39900937:A:C | donor_loss | 0.9900 |
| 1:39900937:AC:A | donor_gain | 0.9900 |
| 1:39900938:C:CC | donor_gain | 0.9900 |
| 1:39900938:CC:C | donor_gain | 0.9900 |
| 1:39897967:TTCTC:T | acceptor_gain | 0.9800 |
| 1:39897968:TCTC:T | acceptor_gain | 0.9800 |
| 1:39897969:CTCT:C | acceptor_gain | 0.9800 |
| 1:39901803:CTCAC:C | donor_loss | 0.9700 |
| 1:39901804:TCACC:T | donor_loss | 0.9700 |
| 1:39901344:T:TA | donor_gain | 0.9600 |
| 1:39901440:CTCC:C | acceptor_gain | 0.9600 |
| 1:39901825:C:CT | donor_gain | 0.9500 |
| 1:39901441:TCCC:T | acceptor_loss | 0.9400 |
AlphaMissense
2371 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:39897499:A:G | L323P | 1.000 |
| 1:39897510:T:A | K319N | 1.000 |
| 1:39897510:T:G | K319N | 1.000 |
| 1:39897556:A:G | L304P | 1.000 |
| 1:39897565:A:G | F301S | 1.000 |
| 1:39897577:A:G | L297P | 1.000 |
| 1:39897586:C:G | R294P | 1.000 |
| 1:39897588:C:A | R293S | 1.000 |
| 1:39897588:C:G | R293S | 1.000 |
| 1:39897589:C:A | R293M | 1.000 |
| 1:39897589:C:G | R293T | 1.000 |
| 1:39897595:C:G | R291P | 1.000 |
| 1:39897596:G:T | R291S | 1.000 |
| 1:39897597:C:A | E290D | 1.000 |
| 1:39897597:C:G | E290D | 1.000 |
| 1:39897598:T:A | E290V | 1.000 |
| 1:39897599:C:T | E290K | 1.000 |
| 1:39897611:G:C | H286D | 1.000 |
| 1:39901336:G:C | F33L | 1.000 |
| 1:39901336:G:T | F33L | 1.000 |
| 1:39901338:A:G | F33L | 1.000 |
| 1:39901347:A:G | W30R | 1.000 |
| 1:39901347:A:T | W30R | 1.000 |
| 1:39897490:G:T | A326D | 0.999 |
| 1:39897491:C:G | A326P | 0.999 |
| 1:39897499:A:T | L323Q | 0.999 |
| 1:39897502:A:T | I322N | 0.999 |
| 1:39897511:T:A | K319I | 0.999 |
| 1:39897512:T:C | K319E | 0.999 |
| 1:39897552:C:A | R305S | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000383217 (1:39900118 T>C), RS1000703940 (1:39898441 A>G), RS1001412518 (1:39899831 T>C), RS1001763850 (1:39899081 A>C,G), RS1002173108 (1:39901270 G>C), RS1002780086 (1:39899689 G>A), RS1002931163 (1:39899364 G>A), RS1003359409 (1:39903910 T>A), RS1003519625 (1:39897923 C>A,T), RS1004024765 (1:39899048 G>A), RS1004140693 (1:39898784 A>G), RS1004187969 (1:39898260 T>C), RS1004200986 (1:39895050 C>A,G), RS1005055787 (1:39902493 G>A), RS1005129214 (1:39902307 A>G,T)
Disease associations
OMIM: gene MIM:164850 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST010002_380 | Refractive error | 4.000000e-10 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
Clinical evidence (CIViC)
Drug × variant × indication: 1 predictive associations from 1 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| MYCL EXPRESSION | I-BET151 + JQ1 | Multiple Myeloma | Sensitivity/Response | CIViC D | EID1706 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, increases expression, affects cotreatment | 5 |
| trichostatin A | affects cotreatment, decreases expression, affects expression, increases expression | 4 |
| sodium arsenite | decreases expression, increases expression | 4 |
| mercuric bromide | decreases expression, affects cotreatment | 2 |
| Air Pollutants | decreases expression | 2 |
| Benzo(a)pyrene | decreases expression, increases methylation | 2 |
| Calcitriol | increases expression, affects cotreatment | 2 |
| Estradiol | decreases expression, affects cotreatment | 2 |
| Lipopolysaccharides | increases expression, affects cotreatment, decreases expression | 2 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Testosterone | affects cotreatment, increases expression, decreases expression | 2 |
| p-Chloromercuribenzoic Acid | affects cotreatment, decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | increases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| hydroquinone | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression | 1 |
| seocalcitol | increases expression | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | decreases expression, affects cotreatment | 1 |
| licochalcone B | increases expression | 1 |
| GSK1210151A | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Leflunomide | increases expression | 1 |
| Endosulfan | increases expression | 1 |
| Formaldehyde | decreases expression | 1 |
| Methotrexate | decreases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 somatic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_LJ42 | LM-NSC008 | Somatic stem cell | Female |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Associated diseases: plasma cell myeloma
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): plasma cell myeloma