MYF6
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Also known as MRF4bHLHc4
Summary
MYF6 (myogenic factor 6, HGNC:7566) is a protein-coding gene on chromosome 12q21.31, encoding Myogenic factor 6 (P23409). Involved in muscle differentiation (myogenic factor).
The protein encoded by this gene is a probable basic helix-loop-helix (bHLH) DNA binding protein involved in muscle differentiation. The encoded protein likely acts as a heterodimer with another bHLH protein. Defects in this gene are a cause of autosomal dominant centronuclear myopathy (ADCNM).
Source: NCBI Gene 4618 — RefSeq curated summary.
At a glance
- Gene–disease (curated): centronuclear myopathy (Limited, GenCC)
- Clinical variants (ClinVar): 74 total — 1 likely-pathogenic
- Phenotypes (HPO): 30
- Transcription factor: yes — 15 downstream targets (CollecTRI)
- MANE Select transcript:
NM_002469
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7566 |
| Approved symbol | MYF6 |
| Name | myogenic factor 6 |
| Location | 12q21.31 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MRF4, bHLHc4 |
| Ensembl gene | ENSG00000111046 |
| Ensembl biotype | protein_coding |
| OMIM | 159991 |
| Entrez | 4618 |
Gene structure
Transcript identifiers
Ensembl transcripts: 2 — 2 protein_coding
ENST00000228641, ENST00000957792
RefSeq mRNA: 1 — MANE Select: NM_002469
NM_002469
CCDS: CCDS9019
Canonical transcript exons
ENST00000228641 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000752671 | 80708524 | 80708614 |
| ENSE00000875267 | 80707634 | 80708238 |
| ENSE00000875268 | 80708842 | 80709474 |
Expression profiles
Bgee: expression breadth ubiquitous, 137 present calls, max score 99.22.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.1878 / max 819.5314, expressed in 64 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 127109 | 0.7649 | 38 |
| 127112 | 0.3121 | 51 |
| 127110 | 0.0615 | 20 |
| 127111 | 0.0278 | 13 |
| 127114 | 0.0097 | 5 |
| 127108 | 0.0073 | 5 |
| 127113 | 0.0045 | 3 |
Top tissues by expression
282 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gluteal muscle | UBERON:0002000 | 99.22 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.13 | gold quality |
| triceps brachii | UBERON:0001509 | 98.83 | gold quality |
| gastrocnemius | UBERON:0001388 | 98.52 | gold quality |
| biceps brachii | UBERON:0001507 | 98.43 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.32 | gold quality |
| deltoid | UBERON:0001476 | 98.25 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.10 | gold quality |
| diaphragm | UBERON:0001103 | 98.04 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 97.95 | gold quality |
| quadriceps femoris | UBERON:0001377 | 97.85 | gold quality |
| vastus lateralis | UBERON:0001379 | 97.77 | gold quality |
| tibialis anterior | UBERON:0001385 | 97.75 | gold quality |
| muscle organ | UBERON:0001630 | 97.14 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 97.14 | gold quality |
| muscle of leg | UBERON:0001383 | 96.80 | gold quality |
| body of tongue | UBERON:0011876 | 95.38 | gold quality |
| muscle tissue | UBERON:0002385 | 88.55 | gold quality |
| tongue | UBERON:0001723 | 84.54 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 84.49 | gold quality |
| superior surface of tongue | UBERON:0007371 | 72.63 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 68.68 | gold quality |
| oral cavity | UBERON:0000167 | 59.80 | silver quality |
| cranial nerve II | UBERON:0000941 | 58.82 | silver quality |
| skin of hip | UBERON:0001554 | 57.33 | silver quality |
| jejunum | UBERON:0002115 | 56.79 | gold quality |
| trabecular bone tissue | UBERON:0002483 | 54.33 | silver quality |
| gingival epithelium | UBERON:0001949 | 52.88 | gold quality |
| gingiva | UBERON:0001828 | 52.85 | gold quality |
| minor salivary gland | UBERON:0001830 | 52.80 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.68 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
15 targets.
| Target | Regulation |
|---|---|
| ACACB | Unknown |
| CDKN1A | Repression |
| CKM | |
| DES | Activation |
| EIF3K | |
| FGF2 | |
| MAPK1 | |
| MEF2A | |
| MYF5 | |
| MYF6 | |
| MYOD1 | Activation |
| MYOG | Repression |
| SCN8A | |
| TKT | |
| TP73 | Activation |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA0667.1 | MYF6 | MyoD/ASC-related factors |
JASPAR matrix evidence (PMIDs): PMID:19443739
Upstream regulators (CollecTRI, top): MEF2A, MEF2C, MEF2D, MYF5, MYF6, MYOD1, MYOG, MYRF, SIX4, TBP
miRNA regulators (miRDB)
26 targeting MYF6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-23B-5P | 99.98 | 66.07 | 587 |
| HSA-MIR-548AT-5P | 99.96 | 70.83 | 2666 |
| HSA-MIR-548AA | 99.96 | 70.64 | 3753 |
| HSA-MIR-548AP-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-548T-3P | 99.96 | 70.64 | 3753 |
| HSA-MIR-23A-5P | 99.94 | 65.39 | 468 |
| HSA-MIR-205-3P | 99.92 | 69.92 | 3165 |
| HSA-MIR-6844 | 99.82 | 70.69 | 2423 |
| HSA-MIR-3156-3P | 99.76 | 66.72 | 939 |
| HSA-MIR-891B | 99.59 | 69.81 | 1083 |
| HSA-MIR-5009-3P | 99.45 | 69.43 | 1341 |
| HSA-MIR-569 | 99.42 | 66.32 | 1009 |
| HSA-MIR-889-3P | 99.40 | 69.76 | 2103 |
| HSA-MIR-584-3P | 99.35 | 67.69 | 1082 |
| HSA-MIR-6734-3P | 99.15 | 66.27 | 1627 |
| HSA-MIR-942-3P | 98.81 | 69.04 | 876 |
| HSA-MIR-6893-3P | 97.79 | 64.91 | 1238 |
| HSA-MIR-370-3P | 97.09 | 64.92 | 1221 |
| HSA-MIR-4509 | 96.19 | 65.80 | 900 |
| HSA-MIR-4524B-3P | 95.52 | 64.12 | 964 |
| HSA-MIR-192-5P | 94.82 | 66.14 | 417 |
| HSA-MIR-215-5P | 94.82 | 66.07 | 422 |
| HSA-MIR-5195-5P | 90.84 | 65.09 | 287 |
Literature-anchored findings (GeneRIF, showing 3)
- The myogenic basic helix-loop-helix family of transcription factors, MyoD, Myf5, myogenin, and MRF4, can each activate the muscle differentiation program. (PMID:12105204)
- Myogenin and myogenic differentiation factor D (MyoD) mRNAs increased (P < 0.05) in young and old, whereas myogenic factor (myf)-5 mRNA increased in young only (P < 0.05). Myf-6 protein increased (P < 0.05) in both young and old. (PMID:16614355)
- Hypomethylation status of MYF6 supported expression in Hairy cell leukemia more than Hairy cell leukemia variant. (PMID:32040482)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | myf6 | ENSDARG00000029830 |
| mus_musculus | Myf6 | ENSMUSG00000035923 |
| rattus_norvegicus | Myf6 | ENSRNOG00000004878 |
| drosophila_melanogaster | nau | FBGN0002922 |
| caenorhabditis_elegans | WBGENE00001948 |
Paralogs (3): MYF5 (ENSG00000111049), MYOG (ENSG00000122180), MYOD1 (ENSG00000129152)
Protein
Protein identifiers
Myogenic factor 6 — P23409 (reviewed: P23409)
Alternative names: Class C basic helix-loop-helix protein 4, Muscle-specific regulatory factor 4
All UniProt accessions (1): P23409
UniProt curated annotations — full annotation on UniProt →
Function. Involved in muscle differentiation (myogenic factor). Induces fibroblasts to differentiate into myoblasts. Probable sequence specific DNA-binding protein.
Subunit / interactions. Efficient DNA binding requires dimerization with another bHLH protein. Interacts with CSRP3.
Subcellular location. Nucleus.
Tissue specificity. Skeletal muscle.
RefSeq proteins (1): NP_002460* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR002546 | MyoD_N | Domain |
| IPR011598 | bHLH_dom | Domain |
| IPR036638 | HLH_DNA-bd_sf | Homologous_superfamily |
| IPR039704 | Myogenic_factor | Family |
Pfam: PF00010, PF01586
UniProt features (6 total): sequence variant 2, chain 1, domain 1, region of interest 1, sequence conflict 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P23409-F1 | 67.22 | 0.28 |
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-525793 | Myogenesis |
| R-HSA-9839394 | TGFBR3 expression |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-162582 | Signal Transduction |
| R-HSA-9006936 | Signaling by TGFB family members |
| R-HSA-9839373 | Signaling by TGFBR3 |
MSigDB gene sets: 243 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_DN, GOBP_EMBRYO_DEVELOPMENT_ENDING_IN_BIRTH_OR_EGG_HATCHING, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_REGULATION_OF_SKELETAL_MUSCLE_TISSUE_DEVELOPMENT, GOBP_MUSCLE_TISSUE_DEVELOPMENT, BENPORATH_ES_WITH_H3K27ME3, GOBP_SKELETAL_MUSCLE_TISSUE_REGENERATION, GOBP_POSITIVE_REGULATION_OF_MUSCLE_CELL_DIFFERENTIATION, GOBP_GROWTH, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_REGULATION_OF_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_REGENERATION, MODULE_329, LHX3_01, AAAYRNCTG_UNKNOWN
GO Biological Process (17): somitogenesis (GO:0001756), regulation of transcription by RNA polymerase II (GO:0006357), skeletal muscle tissue development (GO:0007519), skeletal muscle cell differentiation (GO:0035914), muscle cell fate commitment (GO:0042693), skeletal muscle tissue regeneration (GO:0043403), positive regulation of myoblast differentiation (GO:0045663), negative regulation of DNA-templated transcription (GO:0045892), positive regulation of transcription by RNA polymerase II (GO:0045944), positive regulation of skeletal muscle fiber development (GO:0048743), muscle tissue morphogenesis (GO:0060415), regulation of DNA-templated transcription (GO:0006355), muscle organ development (GO:0007517), tissue development (GO:0009888), cell differentiation (GO:0030154), positive regulation of DNA-templated transcription (GO:0045893), animal organ development (GO:0048513)
GO Molecular Function (9): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), DNA-binding transcription activator activity, RNA polymerase II-specific (GO:0001228), DNA-binding transcription factor activity (GO:0003700), protein dimerization activity (GO:0046983), sequence-specific double-stranded DNA binding (GO:1990837), DNA binding (GO:0003677), protein binding (GO:0005515), E-box binding (GO:0070888)
GO Cellular Component (6): chromatin (GO:0000785), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytosol (GO:0005829), mitotic spindle (GO:0072686), RNA polymerase II transcription regulator complex (GO:0090575)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Developmental Biology | 1 |
| Signaling by TGFBR3 | 1 |
| Signal Transduction | 1 |
| Signaling by TGFB family members | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 4 |
| DNA-templated transcription | 3 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 3 |
| cellular anatomical structure | 3 |
| transcription by RNA polymerase II | 2 |
| regulation of transcription by RNA polymerase II | 2 |
| anatomical structure development | 2 |
| anterior/posterior pattern specification | 1 |
| segmentation | 1 |
| chordate embryonic development | 1 |
| anatomical structure formation involved in morphogenesis | 1 |
| somite development | 1 |
| striated muscle tissue development | 1 |
| skeletal muscle organ development | 1 |
| skeletal muscle tissue development | 1 |
| cell differentiation | 1 |
| muscle cell differentiation | 1 |
| cell fate commitment | 1 |
| tissue regeneration | 1 |
| myoblast differentiation | 1 |
| positive regulation of cell differentiation | 1 |
| regulation of myoblast differentiation | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| positive regulation of DNA-templated transcription | 1 |
| positive regulation of cell development | 1 |
| positive regulation of skeletal muscle tissue development | 1 |
| skeletal muscle fiber development | 1 |
| regulation of skeletal muscle fiber development | 1 |
| positive regulation of striated muscle cell differentiation | 1 |
| muscle organ morphogenesis | 1 |
| tissue morphogenesis | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| animal organ development | 1 |
| muscle structure development | 1 |
| cellular developmental process | 1 |
| positive regulation of RNA biosynthetic process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
Protein interactions and networks
STRING
1414 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MYF6 | PAX3 | P23760 | 891 |
| MYF6 | PAX7 | P23759 | 836 |
| MYF6 | MYF5 | P13349 | 803 |
| MYF6 | MYOD1 | P15172 | 791 |
| MYF6 | ZFP62 | Q8NB50 | 769 |
| MYF6 | MEF2A | Q02078 | 731 |
| MYF6 | MSTN | O14793 | 713 |
| MYF6 | MYH2 | Q9UKX2 | 707 |
| MYF6 | MYOG | P15173 | 691 |
| MYF6 | SAXO6 | Q8TC05 | 678 |
| MYF6 | MYH1 | P12882 | 669 |
| MYF6 | MYH6 | P13533 | 661 |
| MYF6 | DMD | P11532 | 649 |
| MYF6 | MYMK | A6NI61 | 632 |
| MYF6 | MTMR14 | Q8NCE2 | 606 |
IntAct
26 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MYF6 | TCF12 | psi-mi:“MI:0915”(physical association) | 0.630 |
| MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| CCL1 | MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| IFNA4 | MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| IFNA8 | MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| IFNL1 | MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| IL23A | MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| IL31 | MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PF4V1 | MYF6 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MYF6 | TBC1D4 | psi-mi:“MI:0914”(association) | 0.350 |
| MYF6 | LAMTOR5 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (28): TCF12 (Two-hybrid), TCF4 (Affinity Capture-MS), TCF12 (Affinity Capture-MS), TCF3 (Affinity Capture-MS), NES (Affinity Capture-MS), ID4 (Affinity Capture-MS), MAPK14 (Affinity Capture-MS), IRGC (Affinity Capture-MS), TBC1D4 (Affinity Capture-MS), DISC1 (Affinity Capture-MS), CSRP2BP (Affinity Capture-MS), MBIP (Affinity Capture-MS), MYF6 (Two-hybrid), MYF6 (Two-hybrid), MYF6 (Reconstituted Complex)
ESM2 similar proteins: A3KNX5, A5YC49, A6NJ46, A6NNA5, F1Q4R9, O09105, O35137, P12979, P15173, P15375, P17920, P19335, P20428, P23409, P28322, P31276, P34060, P34061, P43268, P43688, P48985, P49812, P70368, P70436, P70661, Q01795, Q08856, Q1KKY2, Q32NH9, Q3MHT3, Q3UHX8, Q3YFL6, Q4G112, Q5ND04, Q5RJB0, Q5TIS6, Q62798, Q66HH3, Q66IG8, Q6VNZ9
Diamond homologs: B6VQA1, M0QWB7, O13125, O13126, O35885, O42202, O57598, O96004, P09774, P09775, P10083, P10084, P10085, P13349, P15172, P15375, P17667, P19335, P19359, P19360, P22816, P23409, P24699, P29331, P34061, P34555, P46581, P48987, P49811, P50553, P57100, P57101, P57102, P59101, P61295, P61296, P70447, P70562, P70595, P70660
SIGNOR signaling
9 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| YAP1 | down-regulates | MYF6 | |
| MYF6 | up-regulates | Skeletal_muscle_differentiation | |
| MEF2C | “up-regulates quantity by expression” | MYF6 | “transcriptional regulation” |
| MEF2A | “up-regulates quantity by expression” | MYF6 | “transcriptional regulation” |
| MEF2D | “up-regulates quantity by expression” | MYF6 | “transcriptional regulation” |
| CSRP3 | “up-regulates activity” | MYF6 | binding |
| MYF6 | “up-regulates quantity by expression” | DES | “transcriptional regulation” |
| MYOG | “up-regulates quantity by expression” | MYF6 | “transcriptional regulation” |
| MYF6 | “up-regulates activity” | Skeletal_muscle_differentiation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
74 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 48 |
| Likely benign | 10 |
| Benign | 7 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 421670 | NM_002469.3(MYF6):c.356G>A (p.Arg119Gln) | Likely pathogenic |
SpliceAI
200 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 12:80708235:AAAT:A | donor_gain | 1.0000 |
| 12:80708236:AAT:A | donor_gain | 1.0000 |
| 12:80708236:AATGT:A | donor_loss | 1.0000 |
| 12:80708237:AT:A | donor_gain | 1.0000 |
| 12:80708238:TGTA:T | donor_loss | 1.0000 |
| 12:80708239:G:GG | donor_gain | 1.0000 |
| 12:80708239:GTA:G | donor_loss | 1.0000 |
| 12:80708240:T:TC | donor_loss | 1.0000 |
| 12:80708217:C:G | donor_gain | 0.9900 |
| 12:80708234:AAAAT:A | donor_gain | 0.9900 |
| 12:80708445:A:T | donor_gain | 0.9900 |
| 12:80708523:GCTT:G | acceptor_gain | 0.9900 |
| 12:80708522:A:AG | acceptor_gain | 0.9800 |
| 12:80708523:G:GG | acceptor_gain | 0.9800 |
| 12:80708611:G:GT | donor_gain | 0.9800 |
| 12:80708612:A:T | donor_gain | 0.9800 |
| 12:80708615:G:T | donor_loss | 0.9800 |
| 12:80708616:T:A | donor_loss | 0.9800 |
| 12:80708835:C:A | acceptor_gain | 0.9800 |
| 12:80708839:CA:C | acceptor_loss | 0.9800 |
| 12:80708840:A:AG | acceptor_gain | 0.9800 |
| 12:80708841:G:A | acceptor_loss | 0.9800 |
| 12:80708841:G:GG | acceptor_gain | 0.9800 |
| 12:80708841:GGA:G | acceptor_gain | 0.9800 |
| 12:80708194:G:GT | donor_gain | 0.9700 |
| 12:80708234:A:T | donor_gain | 0.9700 |
| 12:80708605:GC:G | donor_gain | 0.9700 |
| 12:80708610:GGAAG:G | donor_gain | 0.9700 |
| 12:80708437:G:GT | donor_gain | 0.9600 |
| 12:80708444:G:GT | donor_gain | 0.9600 |
AlphaMissense
1576 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 12:80707948:T:C | C77R | 1.000 |
| 12:80707957:T:A | W80R | 1.000 |
| 12:80707957:T:C | W80R | 1.000 |
| 12:80707959:G:C | W80C | 1.000 |
| 12:80707959:G:T | W80C | 1.000 |
| 12:80707963:T:C | C82R | 1.000 |
| 12:80707964:G:A | C82Y | 1.000 |
| 12:80707965:C:G | C82W | 1.000 |
| 12:80708012:C:A | A98D | 1.000 |
| 12:80708018:T:C | L100P | 1.000 |
| 12:80708020:C:A | R101S | 1.000 |
| 12:80708020:C:T | R101C | 1.000 |
| 12:80708023:G:A | E102K | 1.000 |
| 12:80708024:A:T | E102V | 1.000 |
| 12:80708025:A:C | E102D | 1.000 |
| 12:80708025:A:T | E102D | 1.000 |
| 12:80708027:G:C | R103T | 1.000 |
| 12:80708027:G:T | R103M | 1.000 |
| 12:80708028:G:C | R103S | 1.000 |
| 12:80708028:G:T | R103S | 1.000 |
| 12:80708033:G:C | R105T | 1.000 |
| 12:80708033:G:T | R105M | 1.000 |
| 12:80708034:G:C | R105S | 1.000 |
| 12:80708034:G:T | R105S | 1.000 |
| 12:80708036:T:A | L106Q | 1.000 |
| 12:80708036:T:C | L106P | 1.000 |
| 12:80708049:C:A | N110K | 1.000 |
| 12:80708049:C:G | N110K | 1.000 |
| 12:80708053:G:C | A112P | 1.000 |
| 12:80708056:T:A | F113I | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1001581168 (12:80706041 G>A), RS1001635276 (12:80706390 T>C), RS1001737785 (12:80706016 C>T), RS1002350513 (12:80707330 A>G,T), RS1002875218 (12:80707055 C>T), RS1003864095 (12:80708319 G>A,C), RS1004935559 (12:80709289 G>T), RS1007217115 (12:80706855 G>C), RS1008317490 (12:80706087 A>G), RS1010614571 (12:80708485 T>G), RS1011729163 (12:80709650 T>A), RS1012074664 (12:80709613 A>T), RS1012168239 (12:80708756 G>A,T), RS1012709667 (12:80709912 C>G), RS1013493242 (12:80708230 C>A,G)
Disease associations
OMIM: gene MIM:159991 | disease phenotypes: MIM:160150, MIM:614408
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| centronuclear myopathy | Limited | Autosomal dominant |
Mondo (2): autosomal dominant centronuclear myopathy (MONDO:0008048), centronuclear myopathy (MONDO:0018947)
Orphanet (1): Autosomal dominant centronuclear myopathy (Orphanet:169189)
HPO phenotypes
30 total (30 of 30 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000020 | Urinary incontinence |
| HP:0000028 | Cryptorchidism |
| HP:0000508 | Ptosis |
| HP:0000544 | External ophthalmoplegia |
| HP:0000883 | Thin ribs |
| HP:0001048 | Cavernous hemangioma |
| HP:0001288 | Gait disturbance |
| HP:0001290 | Generalized hypotonia |
| HP:0001436 | Abnormality of the foot musculature |
| HP:0001520 | Large for gestational age |
| HP:0001558 | Decreased fetal movement |
| HP:0001561 | Polyhydramnios |
| HP:0002021 | Pyloric stenosis |
| HP:0002047 | Malignant hyperthermia |
| HP:0002194 | Delayed gross motor development |
| HP:0002522 | Areflexia of lower limbs |
| HP:0002747 | Respiratory insufficiency due to muscle weakness |
| HP:0003458 | EMG: myopathic abnormalities |
| HP:0003477 | Peripheral axonal neuropathy |
| HP:0003687 | Centrally nucleated skeletal muscle fibers |
| HP:0003738 | Exercise-induced myalgia |
| HP:0003803 | Type 1 muscle fiber predominance |
| HP:0004488 | Macrocephaly at birth |
| HP:0005268 | Miscarriage |
| HP:0008180 | Mildly elevated creatine kinase |
| HP:0008981 | Calf muscle hypertrophy |
| HP:0008994 | Proximal lower limb muscle weakness |
| HP:0008997 | Proximal upper limb muscle weakness |
| HP:0010546 | Muscle fibrillation |
| HP:0012768 | Neonatal asphyxia |
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
13 total (human), top 13 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Vorinostat | affects cotreatment, increases expression | 2 |
| Valproic Acid | affects expression, decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| arsenite | increases methylation | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| incobotulinumtoxinA | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Endosulfan | decreases expression | 1 |
| Tretinoin | increases response to substance | 1 |
| Palmitic Acid | increases expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A4I5 | SEES3-1V human MYF6, clone1 | Embryonic stem cell | Male |
| CVCL_A4I6 | SEES3-1V human MYF6, clone2 | Embryonic stem cell | Male |
| CVCL_A4I7 | SEES3-1V human MYF6, clone3 | Embryonic stem cell | Male |
Clinical trials (associated diseases)
12 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04033159 | PHASE1/PHASE2 | TERMINATED | Early Phase Human Drug Trial to Investigate Dynamin 101 (DYN101) in Patients ≥ 16 Years With Centronuclear Myopathies |
| NCT04743557 | PHASE1/PHASE2 | WITHDRAWN | Early Phase Human Drug Trial to Investigate DYN101 in Participants 2 to 17 Years With Centronuclear Myopathies |
| NCT00272883 | Not specified | RECRUITING | Molecular and Genetic Studies of Congenital Myopathies |
| NCT03351270 | Not specified | COMPLETED | Prospective Natural History Study of Patients With Myotubular Myopathy and Other CentroNuclear Myopathies |
| NCT04064307 | Not specified | RECRUITING | Myotubular and Centronuclear Myopathy Patient Registry |
| NCT04977648 | Not specified | WITHDRAWN | Natural History Study of Patients With Centronuclear Myopathies |
| NCT05099107 | Not specified | COMPLETED | Changes of Motor Function Tests in Congenital Myopathy Subjects Treated With Oral Salbutamol as Compared to no Treatment |
| NCT05982119 | Not specified | RECRUITING | Assessments in Patients With Muscular Pathology and in Control Subjects : The ActiLiège Next Study |
| NCT06157268 | Not specified | RECRUITING | The Natural History and Muscle Fatigability of Patients With Congenital Myopathies. |
| NCT06791369 | Not specified | NOT_YET_RECRUITING | The Prevalence of RYR1-related Disease |
| NCT07021820 | Not specified | RECRUITING | Multispectral Optoacoustic Tomography for Advanced Imaging of Centronuclear Myopathy |
| NCT07478172 | Not specified | RECRUITING | Effects of Whole-body Electrical Muscle Stimulation Exercise on Adults With Neuromuscular Disease |
Related Atlas pages
- Associated diseases: centronuclear myopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant centronuclear myopathy, centronuclear myopathy