MYH11
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Also known as SMMHCSMHCSMMS-1
Summary
MYH11 (myosin heavy chain 11, HGNC:7569) is a protein-coding gene on chromosome 16p13.11, encoding Myosin-11 (P35749). Muscle contraction.
The protein encoded by this gene is a smooth muscle myosin belonging to the myosin heavy chain family. The gene product is a subunit of a hexameric protein that consists of two heavy chain subunits and two pairs of non-identical light chain subunits. It functions as a major contractile protein, converting chemical energy into mechanical energy through the hydrolysis of ATP. A chromosomal rearrangement involving this gene is associated with acute myeloid leukemia of the M4Eo subtype. Mutations in this gene are associated with visceral myopathy, megacystis-microcolon-intestinal hypoperistalsis syndrome 2, and familial thoracic aortic aneurysm 4.
Source: NCBI Gene 4629 — RefSeq curated summary.
At a glance
- Gene–disease (curated): familial thoracic aortic aneurysm and aortic dissection (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 25
- Clinical variants (ClinVar): 3,634 total — 35 pathogenic, 28 likely-pathogenic
- Phenotypes (HPO): 102
- Cancer driver (intOGen): activating (oncogene-like) across 10 cancer types
- Dosage sensitivity (ClinGen): haploinsufficiency no evidence, triplosensitivity no evidence
- MANE Select transcript:
NM_002474
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7569 |
| Approved symbol | MYH11 |
| Name | myosin heavy chain 11 |
| Location | 16p13.11 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | SMMHC, SMHC, SMMS-1 |
| Ensembl gene | ENSG00000133392 |
| Ensembl biotype | protein_coding |
| OMIM | 160745 |
| Entrez | 4629 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 17 protein_coding, 7 retained_intron, 1 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000300036, ENST00000396324, ENST00000452625, ENST00000570785, ENST00000571275, ENST00000571505, ENST00000571910, ENST00000573908, ENST00000574119, ENST00000576164, ENST00000576790, ENST00000651659, ENST00000652121, ENST00000713757, ENST00000911133, ENST00000911134, ENST00000911135, ENST00000911136, ENST00000911137, ENST00000911138, ENST00000911139, ENST00000911140, ENST00000963701, ENST00000963702, ENST00000963703, ENST00000963704
RefSeq mRNA: 4 — MANE Select: NM_002474
NM_001040113, NM_001040114, NM_002474, NM_022844
CCDS: CCDS10565, CCDS10566, CCDS45423, CCDS45424
Canonical transcript exons
ENST00000300036 — 41 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000909158 | 15782385 | 15782477 |
| ENSE00000909168 | 15750138 | 15750331 |
| ENSE00000909169 | 15748047 | 15748168 |
| ENSE00000909170 | 15747874 | 15747943 |
| ENSE00000909172 | 15745129 | 15745237 |
| ENSE00000909173 | 15741463 | 15741669 |
| ENSE00000909174 | 15740051 | 15740188 |
| ENSE00000909175 | 15738565 | 15738688 |
| ENSE00000909176 | 15737449 | 15737620 |
| ENSE00000909177 | 15735366 | 15735578 |
| ENSE00000909178 | 15732564 | 15732708 |
| ENSE00000909180 | 15724888 | 15724992 |
| ENSE00001029512 | 15786630 | 15786732 |
| ENSE00001029538 | 15714909 | 15715081 |
| ENSE00001029555 | 15741760 | 15741891 |
| ENSE00001106658 | 15747570 | 15747730 |
| ENSE00001131314 | 15726848 | 15727054 |
| ENSE00002643568 | 15703135 | 15704123 |
| ENSE00002662444 | 15856941 | 15857028 |
| ENSE00003459223 | 15724647 | 15724799 |
| ENSE00003467088 | 15719585 | 15719713 |
| ENSE00003468829 | 15776078 | 15776176 |
| ENSE00003478662 | 15798660 | 15798687 |
| ENSE00003517919 | 15719220 | 15719308 |
| ENSE00003525773 | 15778780 | 15778843 |
| ENSE00003528672 | 15718315 | 15718438 |
| ENSE00003543753 | 15720839 | 15721051 |
| ENSE00003550972 | 15837908 | 15838269 |
| ENSE00003557812 | 15717140 | 15717348 |
| ENSE00003559452 | 15771569 | 15771712 |
| ENSE00003567222 | 15715164 | 15715272 |
| ENSE00003581702 | 15759576 | 15759728 |
| ENSE00003604193 | 15753394 | 15753508 |
| ENSE00003608180 | 15823255 | 15823411 |
| ENSE00003608291 | 15756341 | 15756514 |
| ENSE00003609181 | 15757827 | 15758000 |
| ENSE00003612287 | 15720151 | 15720312 |
| ENSE00003620233 | 15724161 | 15724409 |
| ENSE00003626018 | 15760540 | 15760658 |
| ENSE00003657690 | 15721422 | 15721634 |
| ENSE00003669277 | 15763796 | 15763891 |
Expression profiles
Bgee: expression breadth ubiquitous, 143 present calls, max score 99.93.
FANTOM5 (CAGE): breadth broad, TPM avg 34.8092 / max 8381.6968, expressed in 276 samples.
FANTOM5 promoters (49 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 156518 | 30.6081 | 241 |
| 156470 | 0.4050 | 58 |
| 156471 | 0.3565 | 58 |
| 156520 | 0.3536 | 83 |
| 156465 | 0.2626 | 47 |
| 156475 | 0.2041 | 47 |
| 156458 | 0.1950 | 43 |
| 156437 | 0.1858 | 45 |
| 156468 | 0.1302 | 39 |
| 156431 | 0.1174 | 35 |
Top tissues by expression
143 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right coronary artery | UBERON:0001625 | 99.93 | gold quality |
| lower esophagus | UBERON:0013473 | 99.93 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 99.93 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.92 | gold quality |
| popliteal artery | UBERON:0002250 | 99.92 | gold quality |
| artery | UBERON:0001637 | 99.91 | gold quality |
| tibial artery | UBERON:0007610 | 99.91 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 99.89 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 99.85 | gold quality |
| left coronary artery | UBERON:0001626 | 99.84 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.84 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 99.83 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.82 | gold quality |
| myometrium | UBERON:0001296 | 99.81 | gold quality |
| ascending aorta | UBERON:0001496 | 99.81 | gold quality |
| body of uterus | UBERON:0009853 | 99.80 | gold quality |
| prostate gland | UBERON:0002367 | 99.75 | gold quality |
| left uterine tube | UBERON:0001303 | 99.72 | gold quality |
| urinary bladder | UBERON:0001255 | 99.65 | gold quality |
| fundus of stomach | UBERON:0001160 | 99.60 | gold quality |
| gall bladder | UBERON:0002110 | 99.42 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.42 | gold quality |
| endocervix | UBERON:0000458 | 99.31 | gold quality |
| esophagus | UBERON:0001043 | 99.24 | gold quality |
| colon | UBERON:0001155 | 99.02 | gold quality |
| right uterine tube | UBERON:0001302 | 98.97 | gold quality |
| intestine | UBERON:0000160 | 98.87 | gold quality |
| colonic epithelium | UBERON:0000397 | 98.69 | gold quality |
| vermiform appendix | UBERON:0001154 | 98.64 | gold quality |
| stomach | UBERON:0000945 | 98.60 | gold quality |
Single-cell (SCXA)
Detected in 15 experiment(s), a significant marker in 14.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-2 | yes | 11194.80 |
| E-MTAB-11268 | yes | 3647.32 |
| E-CURD-126 | yes | 3018.44 |
| E-MTAB-9543 | yes | 3016.30 |
| E-HCAD-36 | yes | 2244.91 |
| E-HCAD-38 | yes | 1562.68 |
| E-GEOD-135922 | yes | 1171.42 |
| E-MTAB-10662 | yes | 1027.02 |
| E-MTAB-10287 | yes | 108.94 |
| E-MTAB-8410 | yes | 34.76 |
| E-HCAD-1 | yes | 34.40 |
| E-HCAD-11 | yes | 19.17 |
| E-CURD-119 | yes | 11.77 |
| E-MTAB-9689 | no | 116.34 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ESR1, GATA6, HMGXB4, KLF5, KLF9, MEF2B, MYC, NOTCH1, RBPJ, SP1, SRF, TEF, TFAP2A
miRNA regulators (miRDB)
67 targeting MYH11, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-5193 | 100.00 | 67.26 | 1744 |
| HSA-MIR-8068 | 99.98 | 73.85 | 2376 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-6772-5P | 99.94 | 67.01 | 577 |
| HSA-MIR-548J-3P | 99.94 | 72.61 | 4881 |
| HSA-MIR-548AE-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-548AH-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AM-3P | 99.93 | 72.54 | 4872 |
| HSA-MIR-548AQ-3P | 99.93 | 72.66 | 4867 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-659-3P | 99.85 | 70.69 | 1620 |
| HSA-MIR-4639-5P | 99.81 | 67.37 | 1028 |
| HSA-MIR-4679 | 99.76 | 69.19 | 1229 |
| HSA-MIR-2681-5P | 99.75 | 67.64 | 1655 |
| HSA-MIR-4729 | 99.69 | 72.18 | 4233 |
| HSA-MIR-580-3P | 99.67 | 69.23 | 1841 |
Functional genomics
ClinGen dosage: haploinsufficiency 0 (no evidence), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- sequence deletion in Pseudoxanthoma elasticum (PMID:11439001)
- leukemogenic fusion gene (with Cbfb) plays a role in hematopoiesis (PMID:12239155)
- Plag1 and Plagl2 are novel leukemia oncogenes that act by expanding hematopoietic progenitors expressing CbF beta-SMMHC. (PMID:15585652)
- Human MYH11 gene mutations provide the first example of a direct change in a specific smooth muscle cell protein leading to an inherited arterial diseases (PMID:16444274)
- Detection of acute myeloid leukemic cells that are characterized by a CBFB-MYH11 gene fusion. (PMID:16502584)
- These observations suggest that when abdominal GS is diagnosed, an analysis of the CBFB/MYH11 fusion gene is necessary to make an appropriate decision regarding treatment options, even if no chromosomal abnormalities are found. (PMID:16504290)
- Agents interacting with the outer surface of the CBFbeta-SMMHC ACD that prevent multimerization may be effective as novel therapeutics in AML (PMID:16767164)
- Rare fusion transcripts were correlated with an atypical cytomorphology not primarily suggestive for the FAB subtype acute myelocytic leukemia. (PMID:17287858)
- Examine consequences of expression of abnormal chimeric protein CBFbeta-MYH11 in acute myelomonocytic leukemia. (PMID:17571080)
- MYH11 mutations are likely to be specific to the phenotype of thoracic aortic aneurysms and dissections associated with patent ductus arteriosus and result in a distinct aortic and occlusive vascular pathology potentially driven by IGF-1 and Ang II. (PMID:17666408)
- MYH11 gene is involved in only rare instances when persistent patency of the arterial duct occurs in sporadic fashion. (PMID:17956658)
- MYH11 mutations in patients with colorectal cancer, Peutz-Jeghers syndrome and juvenile polyposis . (PMID:18391202)
- Little evidence for a role of somatic MYH11 mutations in the formation of breast or prostate cancers (PMID:18796164)
- three novel amino acid substitutions in MYH11 in AML samples, located in the highly conserved myosin head and rod essential for motor function and regulation of MYH11 (PMID:18798114)
- MYH11 mutation is not required for early hereditary nonpolyposis colorectal cancer adenoma formation, but it is selected for in the process of microsattelite instability positive cancer tumorigenesis. (PMID:18941465)
- Selective overexpression of airway smooth muscle genes in asthmatic airways leads to increased Vmax, thus contributing to the airway hyperresponsiveness observed in asthma. (PMID:19011151)
- Data show that the purified hMDCs cultured in SMIM for 4 weeks and expressed significant amount of smooth muscle myosin heavy chain and alpha-smooth muscle actin. (PMID:20132408)
- CBFB-MYH11 rearrangement is associated with acute myeloid leukemia. (PMID:20508610)
- Data suggest that that hASMCs contain a significant pool of functional SMM in the 10S conformation that can assemble into filaments upon changing cellular conditions. (PMID:21205888)
- increased MYH11 expression was found in aortic tissues from TAAD patients with 16p13.1 duplications compared with control aortas. (PMID:21698135)
- MYH11 mutations are rare and are identified in patients with thoracic aortic aneurysm/dissection. (PMID:21937134)
- Data show that homozygous and compound heterozygous changes found in PLOD1 and SLC2A10 may confer autosomal recessive effects, and three MYH11, ACTA2 and COL3A1 heterozygous variants were considered as putative pathogenic gene alterations. (PMID:22001912)
- A rare variant in MYH11, R247C, alters myosin contractile function and smooth muscle cell phenotype, leading to increased proliferation in vitro and in response to vascular injury. (PMID:22511748)
- Incomplete segregation of MYH11 variants with thoracic aortic aneurysms and dissections and patent ductus arteriosus. (PMID:22968129)
- Our data indicate that the CBFbeta-SMMHC’s C-terminus is essential to induce embryonic hematopoietic defects and leukemogenesis. (PMID:23152542)
- We conclude that non-type A CBFB-MYH11 fusion types associate with distinct clinical and genetic features, including lack of KIT mutations, and a unique gene-expression profile in acute myeloid leukemia (PMID:23160462)
- Transcriptional analysis revealed that upon fusion protein knockdown, a small subset of the CBFbeta-MYH11 target genes show increased expression, confirming a role in transcriptional repression (PMID:24002588)
- overexpression of MYH11 can lead to increased ER stress and autophagy (PMID:24711452)
- MYH11 gene mutation is associated with family history of thoracic aortic aneurysm dissection. (PMID:24921172)
- CBFB contributes to the transcriptional regulation of ribosomal gene expression and provide further understanding of the epigenetic role of CBFB-SMMHC in proliferation and maintenance of the leukemic phenotype. (PMID:25079347)
- Data suggest that expression of MYH11, myosin light chain, and MLCK (myosin-light-chain kinase), is up-regulated in uterine myoma as compared to adjacent smooth muscle cells; expression of MYH11 appears to be involved in cell proliferation. (PMID:25181625)
- we report a novel hypomethylation pattern, specific to CBFB-MYH11 fusion resulting from inv(16) rearrangement in acute myeloid leukemia the expression of which correlated with PBX3 differential methylation (PMID:25266220)
- In familial AAA we found one pathogenic and segregating variant (COL3A1 p.Arg491X), one likely pathogenic and segregating (MYH11 p.Arg254Cys), and fifteen VUS. (PMID:26017485)
- Deletion mutation in MYH11 gene causing familial Thoracic aortic dissection was identified in two independent Japanese pedigrees. (PMID:26056961)
- the presented study demonstrates that CBFB-MYH11-based MRD status during the first 3 months after allo-HCT, but not KIT mutations, can be used to identify patients with a high risk of relapse. (PMID:27650511)
- In patients with MYH11 or ACTA2 variants, the effect of intronic variants on splicing was demonstrated on the mRNA level in the induced smooth muscle cell (SMC), allowing classification into pathogenic or nonpathogenic variants. (PMID:28074631)
- Our results show that MYH11 gene harbors somatic frameshift mutations mostly associated with mutational intratumoral heterogeneity , which together may be features of microsatellite instability gastric cancers and colorectal cancers. (PMID:29517504)
- Circulating levels of myosin-11, which is a smooth muscle cell-specific myosin isoform, may be useful as a biomarker for abdominal aortic aneurysms. (PMID:30004237)
- Novel variants in the ACTA2 and MYH11 genes was identified in a Cypriot family with thoracic aortic aneurysms. (PMID:30526509)
- Identification of a dominant MYH11 causal variant in chronic intestinal pseudo-obstruction: Results of whole-exome sequencing. (PMID:31389005)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | myh11a | ENSDARG00000009782 |
| danio_rerio | myh11b | ENSDARG00000100972 |
| mus_musculus | Myh11 | ENSMUSG00000018830 |
| rattus_norvegicus | Myh11 | ENSRNOG00000057880 |
Paralogs (44): MYH13 (ENSG00000006788), MYO16 (ENSG00000041515), MYO9A (ENSG00000066933), MYO3B (ENSG00000071909), MYH7B (ENSG00000078814), MYO15A (ENSG00000091536), MYH7 (ENSG00000092054), MYO3A (ENSG00000095777), MYO9B (ENSG00000099331), MYH9 (ENSG00000100345), MYH14 (ENSG00000105357), MYH1 (ENSG00000109061), MYH3 (ENSG00000109063), MYH2 (ENSG00000125414), MYO1B (ENSG00000128641), MYO5C (ENSG00000128833), CGNL1 (ENSG00000128849), MYH8 (ENSG00000133020), MYH10 (ENSG00000133026), MYO18B (ENSG00000133454), CCDC102A (ENSG00000135736), MYO1G (ENSG00000136286), MYO7A (ENSG00000137474), MYO1F (ENSG00000142347), CGN (ENSG00000143375), TMF1 (ENSG00000144747), MYH15 (ENSG00000144821), MYO10 (ENSG00000145555), CCDC102B (ENSG00000150636), MYO1E (ENSG00000157483), CCDC158 (ENSG00000163749), MYO1A (ENSG00000166866), MYO5B (ENSG00000167306), MYO7B (ENSG00000169994), MYO1H (ENSG00000174527), MYO1D (ENSG00000176658), MYO18A (ENSG00000196535), MYO6 (ENSG00000196586), MYO5A (ENSG00000197535), MYH6 (ENSG00000197616)
Protein
Protein identifiers
Myosin-11 — P35749 (reviewed: P35749)
Alternative names: Myosin heavy chain 11, Myosin heavy chain, smooth muscle isoform, SMMHC
All UniProt accessions (3): A0A024QZJ4, A0A494C024, P35749
UniProt curated annotations — full annotation on UniProt →
Function. Muscle contraction.
Subunit / interactions. Muscle myosin is a hexameric protein that consists of 2 heavy chain subunits (MHC), 2 alkali light chain subunits (MLC) and 2 regulatory light chain subunits (MLC-2).
Subcellular location. Melanosome.
Tissue specificity. Smooth muscle; expressed in the umbilical artery, bladder, esophagus and trachea. Isoform 1 is mostly found in slowly contracting tonic muscles.
Disease relevance. A chromosomal aberration involving MYH11 is found in acute myeloid leukemia of M4EO subtype. Pericentric inversion inv(16)(p13;q22). The inversion produces a fusion protein consisting of the 165 N-terminal residues of CBF-beta (PEPB2) and the tail region of MYH11. Aortic aneurysm, familial thoracic 4 (AAT4) [MIM:132900] A disease characterized by permanent dilation of the thoracic aorta usually due to degenerative changes in the aortic wall. It is primarily associated with a characteristic histologic appearance known as ‘medial necrosis’ or ‘Erdheim cystic medial necrosis’ in which there is degeneration and fragmentation of elastic fibers, loss of smooth muscle cells, and an accumulation of basophilic ground substance. The disease is caused by variants affecting the gene represented in this entry. Megacystis-microcolon-intestinal hypoperistalsis syndrome 2 (MMIHS2) [MIM:619351] A form of megacystis-microcolon-intestinal hypoperistalsis syndrome, a congenital visceral myopathy primarily affecting females, and characterized by loss of smooth muscle contraction in the bladder and intestine. Affected individuals present at birth with functional obstruction of intestine, microcolon, dilation of bladder, and secondary hydronephrosis. The majority of cases have a fatal outcome due to malnutrition and sepsis, followed by multiorgan failure. MMIHS2 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry. Visceral myopathy 2 (VSCM2) [MIM:619350] A form of visceral myopathy, a gastrointestinal pseudo-obstruction disorder characterized by impaired function of enteric smooth muscle cells, intestinal dysmotility and paresis, severe abdominal pain, and malnutrition. The disease shows inter- and intrafamilial variability. VSCM2 inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. The rodlike tail sequence is highly repetitive, showing cycles of a 28-residue repeat pattern composed of 4 heptapeptides, characteristic for alpha-helical coiled coils. Limited proteolysis of myosin heavy chain produces 1 light meromyosin (LMM) and 1 heavy meromyosin (HMM). HMM can be further cleaved into 2 globular subfragments (S1) and 1 rod-shaped subfragment (S2).
Miscellaneous. This isoform with a 7 AA insert in the head domain is predominantly expressed in rapidly contracting phasic muscles. This isoform with a 7 AA insert in the head domain is predominantly expressed in rapidly contracting phasic muscles.
Similarity. Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P35749-1 | 1, SM-A | yes |
| P35749-2 | 2, SM-B1 | |
| P35749-3 | 3, SM-B2 | |
| P35749-4 | 4 |
RefSeq proteins (4): NP_001035202, NP_001035203, NP_002465, NP_074035 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ_motif_EF-hand-BS | Binding_site |
| IPR001609 | Myosin_head_motor_dom-like | Domain |
| IPR002928 | Myosin_tail | Domain |
| IPR004009 | SH3_Myosin | Domain |
| IPR008989 | Myosin_S1_N | Homologous_superfamily |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR036961 | Kinesin_motor_dom_sf | Homologous_superfamily |
Pfam: PF00063, PF01576, PF02736
UniProt features (43 total): sequence variant 11, modified residue 10, region of interest 6, sequence conflict 5, domain 3, compositionally biased region 3, splice variant 2, chain 1, coiled-coil region 1, binding site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9FU2 | X-RAY DIFFRACTION | 2.58 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P35749-F1 | 76.49 | 0.19 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 178–185
Post-translational modifications (10): 8, 23, 40, 129, 1177, 1684, 1722, 1954, 1958, 1971
Function
Pathways and Gene Ontology
Reactome pathways
19 pathways
| ID | Pathway |
|---|---|
| R-HSA-3928663 | EPHA-mediated growth cone collapse |
| R-HSA-416572 | Sema4D induced cell migration and growth-cone collapse |
| R-HSA-445355 | Smooth Muscle Contraction |
| R-HSA-5625740 | RHO GTPases activate PKNs |
| R-HSA-5625900 | RHO GTPases activate CIT |
| R-HSA-5627117 | RHO GTPases Activate ROCKs |
| R-HSA-5627123 | RHO GTPases activate PAKs |
| R-HSA-9927432 | Developmental Lineage of Mammary Gland Myoepithelial Cells |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-162582 | Signal Transduction |
| R-HSA-194315 | Signaling by Rho GTPases |
| R-HSA-195258 | RHO GTPase Effectors |
| R-HSA-2682334 | EPH-Ephrin signaling |
| R-HSA-373755 | Semaphorin interactions |
| R-HSA-397014 | Muscle contraction |
| R-HSA-400685 | Sema4D in semaphorin signaling |
| R-HSA-422475 | Axon guidance |
| R-HSA-9675108 | Nervous system development |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 |
MSigDB gene sets: 494 (showing top):
VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOBP_MUSCLE_TISSUE_DEVELOPMENT, YAGI_AML_WITH_INV_16_TRANSLOCATION, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, MCBRYAN_TERMINAL_END_BUD_UP, KEGG_TIGHT_JUNCTION, GOBP_EXTRACELLULAR_MATRIX_ASSEMBLY, MODULE_329, MODULE_503, SRF_Q5_01, SRF_01, MODULE_66, BROWNE_HCMV_INFECTION_48HR_DN, KEGG_VIRAL_MYOCARDITIS
GO Biological Process (5): smooth muscle contraction (GO:0006939), skeletal muscle myosin thick filament assembly (GO:0030241), actomyosin structure organization (GO:0031032), elastic fiber assembly (GO:0048251), cardiac muscle cell development (GO:0055013)
GO Molecular Function (9): microfilament motor activity (GO:0000146), calmodulin binding (GO:0005516), ATP binding (GO:0005524), structural constituent of muscle (GO:0008307), actin filament binding (GO:0051015), nucleotide binding (GO:0000166), cytoskeletal motor activity (GO:0003774), actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (8): cytoplasm (GO:0005737), cytosol (GO:0005829), muscle myosin complex (GO:0005859), myosin II complex (GO:0016460), myosin filament (GO:0032982), melanosome (GO:0042470), extracellular exosome (GO:0070062), myosin complex (GO:0016459)
Reactome top-level categories
Rollup of top-12 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase Effectors | 4 |
| Axon guidance | 2 |
| EPH-Ephrin signaling | 1 |
| Sema4D in semaphorin signaling | 1 |
| Muscle contraction | 1 |
| Developmental Lineages of the Mammary Gland | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| Signaling by Rho GTPases | 1 |
| Semaphorin interactions | 1 |
| Nervous system development | 1 |
| Developmental Biology | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| myosin complex | 2 |
| muscle contraction | 1 |
| skeletal myofibril assembly | 1 |
| striated muscle myosin thick filament assembly | 1 |
| actin cytoskeleton organization | 1 |
| extracellular matrix assembly | 1 |
| supramolecular fiber organization | 1 |
| striated muscle cell development | 1 |
| cardiac cell development | 1 |
| cardiac muscle cell differentiation | 1 |
| cytoskeletal motor activity | 1 |
| polypeptide conformation or assembly isomerase activity | 1 |
| ATP-dependent activity | 1 |
| protein binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| structural molecule activity | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| myosin II complex | 1 |
| contractile muscle fiber | 1 |
| supramolecular fiber | 1 |
| pigment granule | 1 |
| extracellular vesicle | 1 |
| actin cytoskeleton | 1 |
| protein-containing complex | 1 |
Protein interactions and networks
STRING
3548 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MYH11 | CBFB | Q13951 | 978 |
| MYH11 | ACTA2 | P03996 | 942 |
| MYH11 | RUNX1 | Q01196 | 922 |
| MYH11 | TAGLN | Q01995 | 878 |
| MYH11 | CNN1 | P51911 | 860 |
| MYH11 | MYLK | Q15746 | 826 |
| MYH11 | RUNX1T1 | Q06455 | 799 |
| MYH11 | SMTN | P53814 | 780 |
| MYH11 | MYOCD | Q8IZQ8 | 779 |
| MYH11 | RARA | P10276 | 719 |
| MYH11 | MYL9 | P24844 | 708 |
| MYH11 | SRF | P11831 | 700 |
| MYH11 | CALD1 | Q05682 | 686 |
| MYH11 | TPM2 | P06468 | 678 |
| MYH11 | PRKG1 | P14619 | 677 |
IntAct
100 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CHUK | IKBKB | psi-mi:“MI:0914”(association) | 0.960 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| LCP1 | PLS3 | psi-mi:“MI:0914”(association) | 0.640 |
| MYL12B | MYH11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| YWHAZ | LMNA | psi-mi:“MI:0914”(association) | 0.560 |
| MPP1 | MYH11 | psi-mi:“MI:0914”(association) | 0.530 |
| GDF9 | MYH11 | psi-mi:“MI:0914”(association) | 0.530 |
| OVCA2 | MYH11 | psi-mi:“MI:0914”(association) | 0.530 |
| SLC9A8 | ZNF432 | psi-mi:“MI:0914”(association) | 0.530 |
| MYL6 | MYL6B | psi-mi:“MI:0914”(association) | 0.530 |
| S100A4 | OIP5 | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| MYH11 | SMC3 | psi-mi:“MI:0915”(physical association) | 0.400 |
| GNAT3 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| ZFAND5 | MYH11 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MYH11 | GAMMAHV.ORF40 | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (170): MYH11 (Affinity Capture-MS), MYH11 (Affinity Capture-MS), MYH11 (Co-fractionation), MYH11 (Affinity Capture-MS), C4BPA (Affinity Capture-MS), CAPZB (Affinity Capture-MS), FLNA (Affinity Capture-MS), MYL6 (Affinity Capture-MS), RAD51 (Affinity Capture-MS), SVIL (Affinity Capture-MS), YWHAE (Affinity Capture-MS), ARPC5 (Affinity Capture-MS), ACTR3 (Affinity Capture-MS), RALBP1 (Affinity Capture-MS), POC1A (Affinity Capture-MS)
ESM2 similar proteins: A0MP03, A3LYL7, A5DKH0, A5PF48, A6ZMG6, E7F9L8, E9Q634, F1PRN2, F4I460, F4JM19, O00159, O00160, O08638, O88329, O94832, P10568, P10587, P11055, P35748, P35749, P70248, P97479, Q01989, Q04439, Q076A3, Q12965, Q13402, Q17LW0, Q17R14, Q23979, Q27966, Q29P71, Q5SYD0, Q5ZLA6, Q62774, Q62812, Q63355, Q63356, Q63357, Q6BUQ2
Diamond homologs: A2AQP0, A7E2Y1, F1PT61, F4I507, F4I5Q6, F4IVR7, G3UW82, K7U9N8, O08638, O14157, O94477, P02563, P02564, P02565, P02566, P02567, P04461, P05659, P05661, P08799, P08964, P10587, P11055, P12844, P12845, P12847, P12882, P12883, P13533, P13535, P13538, P13539, P13540, P13541, P13542, P14105, P19524, P21271, P24733, P32492
SIGNOR signaling
0 interactions.
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 10 cancer types — AML, BRCA, CHOL, HNSC, LGGNOS, MEL, NPC, PRAD, PROSTATE, SOFT_TISSUE.
Clinical variants and AI predictions
ClinVar
3634 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 35 |
| Likely pathogenic | 28 |
| Uncertain significance | 1787 |
| Likely benign | 1306 |
| Benign | 125 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1120184 | NM_002474.3(MYH11):c.3519_3520delinsTT (p.Glu1173_Gln1174delinsAspTer) | Pathogenic |
| 1341984 | NM_002474.3(MYH11):c.3122-2_3124del | Pathogenic |
| 1420242 | NM_002474.3(MYH11):c.5599C>T (p.Gln1867Ter) | Pathogenic |
| 1456354 | NM_002474.3(MYH11):c.3277C>T (p.Gln1093Ter) | Pathogenic |
| 1685965 | NM_002474.3(MYH11):c.1750-1G>A | Pathogenic |
| 1879334 | NM_002474.3(MYH11):c.436A>T (p.Lys146Ter) | Pathogenic |
| 2008795 | NM_002474.3(MYH11):c.2334del (p.Glu779fs) | Pathogenic |
| 2029392 | NM_002474.3(MYH11):c.3297del (p.Asp1100fs) | Pathogenic |
| 211548 | NM_002474.3(MYH11):c.3422_3470del (p.Lys1141fs) | Pathogenic |
| 2115671 | NM_002474.3(MYH11):c.1024G>T (p.Glu342Ter) | Pathogenic |
| 2423551 | NC_000016.9:g.(?15892497)(15892564_?)del | Pathogenic |
| 2423552 | NC_000016.9:g.(?15832402)(15850391_?)del | Pathogenic |
| 2423553 | NC_000016.9:g.(?15826401)(15829455_?)del | Pathogenic |
| 242663 | NM_002474.3(MYH11):c.4578+1G>T | Pathogenic |
| 2707041 | NM_002474.3(MYH11):c.3313C>T (p.Gln1105Ter) | Pathogenic |
| 2726402 | NM_002474.3(MYH11):c.4179dup (p.Lys1394fs) | Pathogenic |
| 2837733 | NM_002474.3(MYH11):c.1116del (p.Met372fs) | Pathogenic |
| 3644106 | NM_002474.3(MYH11):c.3042dup (p.Leu1015fs) | Pathogenic |
| 3681662 | NM_002474.3(MYH11):c.1527del (p.Ile509fs) | Pathogenic |
| 3724019 | NM_002474.3(MYH11):c.1201_1208del (p.Ile401fs) | Pathogenic |
| 3728366 | NM_002474.3(MYH11):c.4278dup (p.Gln1427fs) | Pathogenic |
| 3772086 | NM_002474.3(MYH11):c.2283C>G (p.Tyr761Ter) | Pathogenic |
| 3776079 | NM_002474.3(MYH11):c.4435dup (p.Arg1479fs) | Pathogenic |
| 4534028 | NM_002474.3(MYH11):c.5350G>T (p.Glu1784Ter) | Pathogenic |
| 465704 | NC_000016.10:g.(?15823235)(15838272_?)del | Pathogenic |
| 4712298 | NM_002474.3(MYH11):c.1861del (p.Asp621fs) | Pathogenic |
| 4721093 | NM_002474.3(MYH11):c.3362C>G (p.Ser1121Ter) | Pathogenic |
| 4798407 | NM_002474.3(MYH11):c.499C>T (p.Gln167Ter) | Pathogenic |
| 4808176 | NM_002474.3(MYH11):c.3071del (p.Asn1024fs) | Pathogenic |
| 4847042 | NC_000016.9:g.(?15737238)(15820211_?)del | Pathogenic |
SpliceAI
5226 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 16:15714903:CCTCA:C | donor_loss | 1.0000 |
| 16:15714904:CTCAC:C | donor_loss | 1.0000 |
| 16:15714905:TCA:T | donor_loss | 1.0000 |
| 16:15714906:CAC:C | donor_loss | 1.0000 |
| 16:15714907:A:T | donor_loss | 1.0000 |
| 16:15715078:CTGC:C | acceptor_gain | 1.0000 |
| 16:15715080:GCCT:G | acceptor_loss | 1.0000 |
| 16:15715081:CCT:C | acceptor_loss | 1.0000 |
| 16:15715082:C:CC | acceptor_gain | 1.0000 |
| 16:15715083:T:G | acceptor_loss | 1.0000 |
| 16:15715086:C:CT | acceptor_gain | 1.0000 |
| 16:15715268:TCTCT:T | acceptor_gain | 1.0000 |
| 16:15715269:CTCT:C | acceptor_gain | 1.0000 |
| 16:15715269:CTCTC:C | acceptor_gain | 1.0000 |
| 16:15715270:TCT:T | acceptor_gain | 1.0000 |
| 16:15715270:TCTC:T | acceptor_loss | 1.0000 |
| 16:15715270:TCTCT:T | acceptor_gain | 1.0000 |
| 16:15715271:CT:C | acceptor_gain | 1.0000 |
| 16:15715271:CTC:C | acceptor_gain | 1.0000 |
| 16:15715272:TC:T | acceptor_loss | 1.0000 |
| 16:15715272:TCT:T | acceptor_gain | 1.0000 |
| 16:15715273:C:A | acceptor_gain | 1.0000 |
| 16:15715273:C:CC | acceptor_gain | 1.0000 |
| 16:15715276:C:CT | acceptor_gain | 1.0000 |
| 16:15715280:C:CT | acceptor_gain | 1.0000 |
| 16:15715281:A:T | acceptor_gain | 1.0000 |
| 16:15715283:C:CT | acceptor_gain | 1.0000 |
| 16:15717136:ATAC:A | donor_loss | 1.0000 |
| 16:15717137:TA:T | donor_loss | 1.0000 |
| 16:15717139:C:CT | donor_loss | 1.0000 |
AlphaMissense
13110 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 16:15720936:A:G | L1565P | 1.000 |
| 16:15720942:A:G | L1563P | 1.000 |
| 16:15720966:A:G | L1555P | 1.000 |
| 16:15735408:A:G | L1155P | 1.000 |
| 16:15735420:A:G | L1151P | 1.000 |
| 16:15741878:A:G | L845P | 1.000 |
| 16:15741881:A:G | L844P | 1.000 |
| 16:15745139:A:G | L837P | 1.000 |
| 16:15745146:A:G | W835R | 1.000 |
| 16:15745146:A:T | W835R | 1.000 |
| 16:15745147:C:A | W834C | 1.000 |
| 16:15745147:C:G | W834C | 1.000 |
| 16:15745149:A:G | W834R | 1.000 |
| 16:15745149:A:T | W834R | 1.000 |
| 16:15745153:C:A | W832C | 1.000 |
| 16:15745153:C:G | W832C | 1.000 |
| 16:15745155:A:G | W832R | 1.000 |
| 16:15745155:A:T | W832R | 1.000 |
| 16:15745183:G:C | N822K | 1.000 |
| 16:15745183:G:T | N822K | 1.000 |
| 16:15747636:C:G | R782P | 1.000 |
| 16:15747648:A:G | L778P | 1.000 |
| 16:15747690:C:T | G764E | 1.000 |
| 16:15748074:C:G | R718P | 1.000 |
| 16:15748098:A:C | I710S | 1.000 |
| 16:15748098:A:G | I710T | 1.000 |
| 16:15748098:A:T | I710N | 1.000 |
| 16:15748101:C:G | R709P | 1.000 |
| 16:15748107:C:T | G707D | 1.000 |
| 16:15748108:C:G | G707R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000009173 (16:15768247 G>T), RS1000023648 (16:15747109 A>G), RS1000037320 (16:15851234 A>C), RS1000066363 (16:15767972 C>A), RS1000073725 (16:15713851 T>A), RS1000086623 (16:15847117 G>A), RS1000089132 (16:15761549 G>A,C), RS1000100639 (16:15753173 G>A), RS1000107708 (16:15705572 G>A), RS1000129877 (16:15722775 C>T), RS1000137764 (16:15831462 GGGGTGTGTGTGT>G), RS1000138250 (16:15827202 A>G), RS1000164156 (16:15717858 G>A,T), RS1000174112 (16:15790611 G>A), RS1000178086 (16:15819990 C>A,G)
Disease associations
OMIM: gene MIM:160745 | disease phenotypes: MIM:132900, MIM:607086, MIM:619351, MIM:619350, MIM:249210, MIM:614019, MIM:155310, MIM:609192, MIM:154700, MIM:611788, MIM:160700, MIM:265500
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| familial thoracic aortic aneurysm and aortic dissection | Definitive | Unknown |
| aortic aneurysm, familial thoracic 4 | Strong | Autosomal dominant |
| megacystis-microcolon-intestinal hypoperistalsis syndrome 2 | Strong | Autosomal recessive |
| megacystis-microcolon-intestinal hypoperistalsis syndrome | Supportive | Autosomal dominant |
| visceral myopathy 2 | Limited | Autosomal recessive |
| congenital heart disease | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| congenital heart disease | Limited | AD |
| familial thoracic aortic aneurysm and aortic dissection | Definitive | AD |
Mondo (22): aortic aneurysm, familial thoracic 4 (MONDO:0007568), familial thoracic aortic aneurysm and aortic dissection (MONDO:0019625), megacystis-microcolon-intestinal hypoperistalsis syndrome 2 (MONDO:0025708), visceral myopathy 2 (MONDO:0859157), megacystis-microcolon-intestinal hypoperistalsis syndrome (MONDO:0025986), connective tissue disorder (MONDO:0003900), lissencephaly 4 (MONDO:0013527), visceral myopathy 1 (MONDO:0020754), Loeys-Dietz syndrome (MONDO:0018954), aortic aneurysm, familial thoracic 1 (MONDO:0024559), aortic aneurysm (MONDO:0005160), Marfan syndrome (MONDO:0007947), aortic aneurysm, familial thoracic 6 (MONDO:0012730), myopia (MONDO:0001384), tricuspid valve insufficiency (MONDO:0002870)
Orphanet (12): Familial thoracic aortic aneurysm and aortic dissection (Orphanet:91387), Megacystis-microcolon-intestinal hypoperistalsis syndrome (Orphanet:2241), Microlissencephaly (Orphanet:1083), Familial visceral myopathy (Orphanet:2604), Familial aortic dissection (Orphanet:229), Loeys-Dietz syndrome (Orphanet:60030), Marfan syndrome type 1 (Orphanet:284963), Marfan syndrome (Orphanet:558), Classical Ehlers-Danlos syndrome (Orphanet:287), Congenital pulmonary valvar stenosis (Orphanet:3189), Chronic intestinal pseudoobstruction syndrome (Orphanet:2978), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
102 total (30 of 102 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000003 | Multicystic kidney dysplasia |
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000021 | Megacystis |
| HP:0000023 | Inguinal hernia |
| HP:0000028 | Cryptorchidism |
| HP:0000072 | Hydroureter |
| HP:0000098 | Tall stature |
| HP:0000278 | Retrognathia |
| HP:0000316 | Hypertelorism |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000525 | Abnormality iris morphology |
| HP:0000766 | Abnormal sternum morphology |
| HP:0000822 | Hypertension |
| HP:0000965 | Cutis marmorata |
| HP:0000978 | Bruising susceptibility |
| HP:0001166 | Arachnodactyly |
| HP:0001297 | Stroke |
| HP:0001522 | Death in infancy |
| HP:0001537 | Umbilical hernia |
| HP:0001539 | Omphalocele |
| HP:0001561 | Polyhydramnios |
| HP:0001562 | Oligohydramnios |
| HP:0001640 | Cardiomegaly |
| HP:0001643 | Patent ductus arteriosus |
| HP:0001647 | Bicuspid aortic valve |
| HP:0001659 | Aortic regurgitation |
| HP:0001677 | Coronary artery atherosclerosis |
| HP:0001763 | Pes planus |
| HP:0002015 | Dysphagia |
GWAS associations
25 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002138_4 | Waist-hip ratio | 9.000000e-07 |
| GCST002444_7 | Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid) | 2.000000e-67 |
| GCST002444_8 | Plasma omega-6 polyunsaturated fatty acid levels (dihomo-gamma-linolenic acid) | 5.000000e-25 |
| GCST002446_5 | Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid) | 1.000000e-15 |
| GCST002446_8 | Plasma omega-6 polyunsaturated fatty acid levels (linoleic acid) | 4.000000e-14 |
| GCST002450_10 | Plasma omega-6 polyunsaturated fatty acid levels (gamma-linolenic acid) | 2.000000e-12 |
| GCST002774_27 | Cognitive function | 4.000000e-06 |
| GCST003051_1 | Multiple myeloma (survival) | 7.000000e-09 |
| GCST003225_26 | Pelvic organ prolapse (moderate/severe) | 3.000000e-07 |
| GCST003818_49 | Resting heart rate | 1.000000e-17 |
| GCST004751_23 | Serum uric acid levels in response to allopurinol in gout | 5.000000e-06 |
| GCST005194_237 | Coronary artery disease | 5.000000e-07 |
| GCST005196_16 | Coronary artery disease | 9.000000e-07 |
| GCST005789_28 | Resting heart rate | 1.000000e-09 |
| GCST007096_249 | Pulse pressure | 2.000000e-08 |
| GCST007269_288 | Pulse pressure | 4.000000e-08 |
| GCST009251_3 | Skin aging measurement | 5.000000e-09 |
| GCST009251_4 | Skin aging measurement | 3.000000e-06 |
| GCST010146_45 | Serum immune biomarker levels | 1.000000e-08 |
| GCST010320_49 | PR interval | 4.000000e-08 |
| GCST010796_2621 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-08 |
| GCST010796_2622 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-08 |
| GCST010796_2623 | Electrocardiogram morphology (amplitude at temporal datapoints) | 4.000000e-08 |
| GCST010866_67 | Coronary artery disease | 4.000000e-08 |
| GCST90014033_65 | Haemorrhoidal disease | 5.000000e-12 |
EFO canonical traits (10, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004343 | waist-hip ratio |
| EFO:0005680 | omega-6 polyunsaturated fatty acid measurement |
| EFO:0004337 | intelligence |
| EFO:0000638 | overall survival |
| EFO:0004761 | uric acid measurement |
| EFO:0005763 | pulse pressure measurement |
| EFO:0004869 | YKL40 measurement |
| EFO:0004872 | inflammatory biomarker measurement |
| EFO:0004462 | PR interval |
| EFO:0004327 | electrocardiography |
MeSH disease descriptors (12)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D001014 | Aortic Aneurysm | C14.907.055.239; C14.907.109.139 |
| D003240 | Connective Tissue Diseases | C17.300 |
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D055947 | Loeys-Dietz Syndrome | C05.660.207.532; C14.907.055.239.587; C14.907.109.139.587; C16.131.077.537; C16.320.510 |
| D008382 | Marfan Syndrome | C05.116.099.674; C14.240.400.725; C14.280.400.725; C16.131.077.550; C16.131.240.400.720; C16.320.540; C17.300.500 |
| D008944 | Mitral Valve Insufficiency | C14.280.484.461 |
| D009216 | Myopia | C11.744.636 |
| D014262 | Tricuspid Valve Insufficiency | C14.280.484.856 |
| C562834 | Aortic Aneurysm, Familial Thoracic 1 (supp.) | |
| C567085 | Aortic Aneurysm, Familial Thoracic 6 (supp.) | |
| C537784 | Aortic aneurysm, familial thoracic 4 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
50 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 3 |
| triphenyl phosphate | affects expression, decreases expression | 2 |
| bisphenol A | decreases expression | 2 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 2 |
| Doxorubicin | decreases expression, increases expression | 2 |
| Nickel | decreases expression | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| testosterone enanthate | affects expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| ethyl-p-hydroxybenzoate | decreases expression | 1 |
| trimellitic anhydride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, decreases expression | 1 |
| pentanal | decreases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| Dasatinib | increases expression | 1 |
| Decitabine | affects expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Amiodarone | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Bleomycin | decreases expression | 1 |
| Cisplatin | affects expression | 1 |
Cellosaurus cell lines
9 cell lines: 9 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_2110 | ME-1 [Human leukemia] | Cancer cell line | Male |
| CVCL_G312 | ME-F1 | Cancer cell line | Male |
| CVCL_G313 | ME-F2 | Cancer cell line | Male |
| CVCL_G314 | ME-F3 | Cancer cell line | Male |
| CVCL_G315 | ME-F2/ADM100 | Cancer cell line | Male |
| CVCL_G316 | ME-F2/ADM200 | Cancer cell line | Male |
| CVCL_RL95 | ME-2 | Cancer cell line | Male |
| CVCL_RM25 | ME-3 | Cancer cell line | Male |
| CVCL_WS58 | ME-1f2 | Cancer cell line | Male |
Clinical trials (associated diseases)
588 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00668824 | PHASE4 | UNKNOWN | Improved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist |
| NCT01368705 | PHASE4 | COMPLETED | Nitrogen Balance in Infants After Post Cardiothoracic Surgery |
| NCT01619982 | PHASE4 | COMPLETED | Pre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients |
| NCT02122679 | PHASE4 | WITHDRAWN | Tranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass |
| NCT02527811 | PHASE4 | UNKNOWN | Ulinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery |
| NCT03014700 | PHASE4 | COMPLETED | Fibrinogen Concentrate vs Cryoprecipitate |
| NCT03408340 | PHASE4 | TERMINATED | Paravertebral Nerve Blocks in Neonates |
| NCT03630796 | PHASE4 | UNKNOWN | Effect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery |
| NCT03667703 | PHASE4 | COMPLETED | Stress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease |
| NCT04453761 | PHASE4 | UNKNOWN | Thiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass |
| NCT06668389 | PHASE4 | RECRUITING | Sodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial |
| NCT07499154 | PHASE4 | NOT_YET_RECRUITING | Perioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery |
| NCT01042158 | PHASE4 | COMPLETED | A Clinical Trial of Ambrisentan and Tadalafil in Pulmonary Arterial Hypertension Associated With Systemic Sclerosis |
| NCT03688191 | PHASE4 | UNKNOWN | Study of Sirolimus in CTD-TP in China |
| NCT04169100 | PHASE4 | UNKNOWN | Novel Form of Acquired Long QT Syndrome |
| NCT04197050 | PHASE4 | UNKNOWN | Effect of Sacubitril/Valsartan on Reduced Right Ventricular Ejection Fraction in Patients With CTD |
| NCT04928586 | PHASE4 | UNKNOWN | Immunosuppressant Combined With Pirfenidone in CTD-ILD |
| NCT05440240 | PHASE4 | RECRUITING | Percutaneous Needle Fasciotomy +/- Corticosteroid Injection for Dupuytren’s Contracture |
| NCT05505409 | PHASE4 | UNKNOWN | Efficacy and Safety of Pirfenidone in CTD-ILD |
| NCT06499233 | PHASE4 | RECRUITING | Efficacy and Safety of Prophylactic Treatment for Pneumocystis Jirovecii Pneumonia in Patients With Autoimmune Inflammatory Rheumatic Disease |
| NCT00094575 | PHASE4 | COMPLETED | Standard Open Surgery Versus Endovascular Repair of Abdominal Aortic Aneurysm (AAA) |
| NCT01033370 | PHASE4 | TERMINATED | A Safety and Efficacy Study of Blood Pressure Control in Acute Aortic Emergencies - A Pilot Study (PROMPT) |
| NCT01107366 | PHASE4 | WITHDRAWN | ATLANTIS:Extensive Type A Dissections and Thoracic/ Thoraco-Abdominal Aneurysms Repair With LupiAe Hybrid TechNique |
| NCT01354119 | PHASE4 | TERMINATED | Long-term Benefit of Aortic Stent-graft in Patients With Distal Aortic Dissection |
| NCT01295047 | PHASE4 | COMPLETED | Comparison of Medical Therapies in Marfan Syndrome. |
| NCT00000470 | PHASE3 | COMPLETED | Infant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest |
| NCT00000494 | PHASE3 | COMPLETED | Management of Patent Ductus in Premature Infants |
| NCT01134302 | PHASE3 | UNKNOWN | Hybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation |
| NCT01607983 | PHASE3 | WITHDRAWN | Effects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients |
| NCT01662011 | PHASE3 | UNKNOWN | Application of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery |
| NCT02320669 | PHASE3 | COMPLETED | Phase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass |
| NCT02615262 | PHASE3 | COMPLETED | Intraoperative Dexamethasone in Pediatric Cardiac Surgery |
| NCT03153137 | PHASE3 | COMPLETED | Clinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects |
| NCT03154476 | PHASE3 | COMPLETED | Role of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study |
| NCT04536194 | PHASE3 | COMPLETED | Dopamine Versus Norepinephrine Under General Anesthesia |
| NCT04702373 | PHASE3 | ACTIVE_NOT_RECRUITING | Training in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT |
| NCT05049590 | PHASE3 | COMPLETED | Acute Normovolemic Hemodilution in Complex Cardiac Surgery |
| NCT06406517 | PHASE3 | UNKNOWN | Comparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics |
| NCT06693674 | PHASE3 | RECRUITING | Effect of Sacubitril-Valsartan on Cardiac Structure and Function |
| NCT06955260 | PHASE3 | NOT_YET_RECRUITING | SGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure |
Related Atlas pages
- Associated diseases: aortic aneurysm, familial thoracic 4, visceral myopathy 2, congenital heart disease, familial thoracic aortic aneurysm and aortic dissection, megacystis-microcolon-intestinal hypoperistalsis syndrome 2, megacystis-microcolon-intestinal hypoperistalsis syndrome 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): aortic aneurysm, aortic aneurysm, familial thoracic 1, aortic aneurysm, familial thoracic 4, aortic aneurysm, familial thoracic 6, chronic intestinal pseudoobstruction, congenital heart disease, connective tissue disorder, Ehlers-Danlos syndrome, classic type, familial thoracic aortic aneurysm and aortic dissection, hemorrhoid, lissencephaly 4, Loeys-Dietz syndrome, Marfan syndrome, megacystis-microcolon-intestinal hypoperistalsis syndrome, megacystis-microcolon-intestinal hypoperistalsis syndrome 2, mitral valve insufficiency, myopia, pelvic organ prolapse, pulmonic stenosis, tricuspid valve insufficiency, visceral myopathy 1, visceral myopathy 2