MYO5A
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Also known as MYO5GS1MYR12
Summary
MYO5A (myosin VA, HGNC:7602) is a protein-coding gene on chromosome 15q21.2, encoding Unconventional myosin-Va (Q9Y4I1). Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament.
This gene is one of three myosin V heavy-chain genes, belonging to the myosin gene superfamily. Myosin V is a class of actin-based motor proteins involved in cytoplasmic vesicle transport and anchorage, spindle-pole alignment and mRNA translocation. The protein encoded by this gene is abundant in melanocytes and nerve cells. Mutations in this gene cause Griscelli syndrome type-1 (GS1) and neuroectodermal melanolysosomal disease, or Elejalde disease.
Source: NCBI Gene 4644 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Griscelli syndrome type 1 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 2
- Clinical variants (ClinVar): 534 total — 8 pathogenic, 3 likely-pathogenic
- Phenotypes (HPO): 46
- Cancer driver (intOGen): activating (oncogene-like) across 4 cancer types
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity no evidence
- MANE Select transcript:
NM_001382347
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7602 |
| Approved symbol | MYO5A |
| Name | myosin VA |
| Location | 15q21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MYO5, GS1, MYR12 |
| Ensembl gene | ENSG00000197535 |
| Ensembl biotype | protein_coding |
| OMIM | 160777 |
| Entrez | 4644 |
Gene structure
Transcript identifiers
Ensembl transcripts: 51 — 21 protein_coding, 19 retained_intron, 10 nonsense_mediated_decay, 1 protein_coding_CDS_not_defined
ENST00000356338, ENST00000399228, ENST00000399229, ENST00000399231, ENST00000399233, ENST00000465290, ENST00000469611, ENST00000553916, ENST00000556196, ENST00000561810, ENST00000685053, ENST00000685194, ENST00000685760, ENST00000685996, ENST00000686166, ENST00000686171, ENST00000686603, ENST00000686659, ENST00000686796, ENST00000686989, ENST00000687172, ENST00000687574, ENST00000687728, ENST00000687748, ENST00000687968, ENST00000688010, ENST00000688074, ENST00000688361, ENST00000688792, ENST00000688798, ENST00000688841, ENST00000689526, ENST00000689601, ENST00000689859, ENST00000689897, ENST00000690537, ENST00000690693, ENST00000690775, ENST00000690802, ENST00000691028, ENST00000691073, ENST00000691448, ENST00000691521, ENST00000691732, ENST00000692201, ENST00000692324, ENST00000692556, ENST00000692646, ENST00000692708, ENST00000692874, ENST00000693471
RefSeq mRNA: 6 — MANE Select: NM_001382347
NM_000259, NM_001142495, NM_001382347, NM_001382348, NM_001382349, NM_001411135
CCDS: CCDS42037, CCDS45262, CCDS91999, CCDS92001
Canonical transcript exons
ENST00000399233 — 42 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000378529 | 52351254 | 52351481 |
| ENSE00000574895 | 52428398 | 52428569 |
| ENSE00000689281 | 52353605 | 52353658 |
| ENSE00000689282 | 52353871 | 52354014 |
| ENSE00000689283 | 52359968 | 52360081 |
| ENSE00000689284 | 52364554 | 52364702 |
| ENSE00000689285 | 52367031 | 52367124 |
| ENSE00000884767 | 52346361 | 52346461 |
| ENSE00000942049 | 52343117 | 52343197 |
| ENSE00000942051 | 52340196 | 52340394 |
| ENSE00000942053 | 52336463 | 52336556 |
| ENSE00000942054 | 52330353 | 52330499 |
| ENSE00000942055 | 52327852 | 52328006 |
| ENSE00000942056 | 52323355 | 52323444 |
| ENSE00000942057 | 52321359 | 52321509 |
| ENSE00000942059 | 52319060 | 52319342 |
| ENSE00000942060 | 52317048 | 52317222 |
| ENSE00000942061 | 52314123 | 52314203 |
| ENSE00001388399 | 52433175 | 52433285 |
| ENSE00001667002 | 52348818 | 52348826 |
| ENSE00001849007 | 52307283 | 52313848 |
| ENSE00002502426 | 52528780 | 52528880 |
| ENSE00003460756 | 52372124 | 52372363 |
| ENSE00003463972 | 52376347 | 52376558 |
| ENSE00003468502 | 52379625 | 52379733 |
| ENSE00003469236 | 52397201 | 52397466 |
| ENSE00003480339 | 52379822 | 52379908 |
| ENSE00003485640 | 52396316 | 52396397 |
| ENSE00003493324 | 52410333 | 52410476 |
| ENSE00003509740 | 52389238 | 52389363 |
| ENSE00003554389 | 52387829 | 52387912 |
| ENSE00003560315 | 52391930 | 52392070 |
| ENSE00003583670 | 52407292 | 52407399 |
| ENSE00003600236 | 52416145 | 52416301 |
| ENSE00003603264 | 52425830 | 52425974 |
| ENSE00003619235 | 52375304 | 52375460 |
| ENSE00003670112 | 52383091 | 52383188 |
| ENSE00003672606 | 52384161 | 52384322 |
| ENSE00003687784 | 52405287 | 52405393 |
| ENSE00003691267 | 52408059 | 52408140 |
| ENSE00003691712 | 52370169 | 52370417 |
| ENSE00003788702 | 52337810 | 52337884 |
Expression profiles
Bgee: expression breadth ubiquitous, 277 present calls, max score 98.80.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.0798 / max 339.0867, expressed in 1730 samples.
FANTOM5 promoters (13 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 150007 | 11.1036 | 1636 |
| 150010 | 6.5459 | 1597 |
| 150011 | 0.3333 | 119 |
| 150005 | 0.2438 | 92 |
| 150009 | 0.2408 | 99 |
| 150006 | 0.1367 | 38 |
| 150013 | 0.1311 | 67 |
| 149994 | 0.1058 | 39 |
| 150008 | 0.0782 | 31 |
| 150012 | 0.0578 | 32 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| lateral nuclear group of thalamus | UBERON:0002736 | 98.80 | gold quality |
| endothelial cell | CL:0000115 | 98.66 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 97.71 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 97.65 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 97.48 | gold quality |
| parietal lobe | UBERON:0001872 | 97.41 | gold quality |
| postcentral gyrus | UBERON:0002581 | 97.31 | gold quality |
| pons | UBERON:0000988 | 97.17 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 96.56 | gold quality |
| entorhinal cortex | UBERON:0002728 | 96.35 | gold quality |
| cortical plate | UBERON:0005343 | 95.77 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 95.74 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 95.41 | gold quality |
| primary visual cortex | UBERON:0002436 | 94.92 | gold quality |
| occipital lobe | UBERON:0002021 | 94.30 | gold quality |
| ventral tegmental area | UBERON:0002691 | 93.79 | gold quality |
| prefrontal cortex | UBERON:0000451 | 93.71 | gold quality |
| cerebellar vermis | UBERON:0004720 | 92.99 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 92.44 | gold quality |
| pigmented layer of retina | UBERON:0001782 | 92.14 | gold quality |
| frontal cortex | UBERON:0001870 | 92.06 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 91.95 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 91.88 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 91.87 | gold quality |
| cerebral cortex | UBERON:0000956 | 91.85 | gold quality |
| neocortex | UBERON:0001950 | 91.84 | gold quality |
| corpus callosum | UBERON:0002336 | 91.54 | gold quality |
| upper leg skin | UBERON:0004262 | 91.39 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 91.32 | gold quality |
| temporal lobe | UBERON:0001871 | 91.08 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-8142 | yes | 17.93 |
| E-GEOD-135922 | yes | 8.54 |
| E-GEOD-137537 | yes | 7.56 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, SNAI1
miRNA regulators (miRDB)
263 targeting MYO5A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6867-5P | 100.00 | 82.21 | 3464 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-190A-3P | 100.00 | 80.35 | 5520 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-188-3P | 100.00 | 68.76 | 1240 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity 0 (no evidence). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- role of function in melanosome transport (PMID:11980908)
- MYO5A mutations in Griscelli disease (PMID:12148598)
- Interactions of human Myosin Va isoforms in human melanocytes are tightly regulated by the tail domain. Interaction with rab27a and melanophilin. Myosin Va medial tail domain provides the globular tail domain with organelle-interacting specificity. (PMID:12603861)
- Griscelli syndrome restricted to hypopigmentation results from a melanophilin defect (GS3) or a MYO5A F-exon deletion (GS1). (PMID:12897212)
- the endosome-associated protein hrs is a subunit of a protein complex containing actinin-4, BERP, and myosin V that is necessary for efficient TfR recycling but not for EGFR degradation (PMID:15772161)
- MYO5A transports dense core secretory vesicles in pancreatic MIN6 beta-cells. (PMID:15788565)
- exon B and its associated dynein light chain have a significant effect on the structure of parts of the coiled-coil tail domains and such a way could influence the regulation and cargo-binding function of myosin Va (PMID:17029413)
- present a kinetic model for the walking of myosin V on actin (PMID:17487986)
- Data suggest that myosin-V makes two brownian 90 degrees rotations per 36-nm step as it processively walks on actin filaments in a hand-over-hand fashion. (PMID:17891151)
- MyoVa directly mediates stable attachment of secretory granules at the plasma membrane. (PMID:17898234)
- Specific knockdown of MyoVa exon F isoforms resulted in transport inhibition of melanosomes to peripheral subcortical actin network in dendrite tips; perinuclear aggregation of melanosomes. May become innovative drug to treat hyperpigmentation. (PMID:18401430)
- During primate spermiogenesis, dynein, myosin Va, MyRIP and Rab27b that compose microtubule-based and actin-based vesicle transport systems are actually present in the manchette and might possibly be involved in intramanchette transport. (PMID:18478159)
- related Rab protein, Rab10, can interact with myosin Va, myosin Vb, and myosin Vc (PMID:19008234)
- data demonstrate an essential role of myosin Va in cancer cell migration and metastasis, and suggest a novel target for Snail in its regulation of cancer progression (PMID:19521958)
- Myosin-Va has a role in restraining Na(+)/K(+)-ATPase-containing vesicles within intracellular pools. (PMID:19808891)
- MARCKS and related chaperones bind to unconventional myosin V isoforms in airway epithelial cells (PMID:20203291)
- Myo5a is activated in cells during HSV-1 infection to help transport virion- and glycoprotein-laden vesicles from the TGN, through the cortical actin, to the plasma membrane. (PMID:20631136)
- Myosin Va is required for P body but not stress granule formation. (PMID:21245139)
- Myo5a and Rab3A are direct binding partners and interact on synaptic vesicles and the Myo5a/Rab3A complex is involved in transport of neuronal vesicles (PMID:21349835)
- A Rab27a/MyRIP/myosin Va complex is involved in linking von-Willebrand factor (Vwf) to the peripheral actin cytoskeleton of endothelial cells to allow full maturation and prevent premature secretion of vWF. (PMID:21740491)
- Calmodulin bound to the first IQ motif is responsible for calcium-dependent regulation of myosin 5a. (PMID:22437832)
- Myosin Va plays a role in the transport and turnover of mRNA. [Review] (PMID:23176491)
- myosin-Va promotes adhesion dynamics, anchorage-independent survival, migration, and invasion in vitro (PMID:23652798)
- Data indicate that myosin Va interacted with multiple new Rab subfamilies including Rab6, Rab14 and Rab39B. (PMID:24006491)
- the cargo-binding domain (CBD) structures of the three human MyoV paralogs (Va, Vb, and Vc), revealing subtle structural changes that drive functional differentiation and a novel redox mechanism controlling the CBD dimerization process (PMID:24097982)
- several crystal structures of the myosin Va or the myosin Vb globular tail domain that gives insights into how the motor is linked to the recycling membrane compartments via Rab11 or the melanophilin adaptor that binds to Rab27a. (PMID:24248336)
- Structural insights into the globular tails of the human type v myosins Myo5a, Myo5b, And Myo5c. (PMID:24339992)
- These findings reveal a new fast-acting energy conservation strategy halting growth by immobilizing myosin V in a newly described state on selectively stabilized actin cables. (PMID:25308080)
- the inhibited Myo5a is equilibrated between the folded state, in which the Mlph-binding site is buried, and the preactivated state, in which the Mlph-binding site is exposed, and that Mlph is able to bind to the Myo5a in preactivated state and activates its motor function. (PMID:27129208)
- ETV6-NTRK3, MYO5A-NTRK3 and MYH9-NTRK3 fusions are identified in Spitz tumours and demonstrated that NTRK3 fusions constitutively activate the mitogen-activated protein kinase, phosphoinositide 3-kinase and phospholipase Cgamma1 pathways in melanocytes. (PMID:27477320)
- the essential melanocyte-specific transcription factor MITF regulates expression of the MYO5A gene, which encodes the molecular motor myosin-Va. (PMID:27939378)
- Mechanochemical cycle of myosin-V has been reported. (PMID:28193897)
- our studies revealed RPGRIP1L as a novel MyoVa-binding protein - the first to be demonstrated to interact with MyoVa at the centrosome - and uncover an unprecedented link between MyoVa and ciliogenesis, providing new perspectives for studies aiming to better understand why defects in MyoVa cause neurological disorders in Griscelli syndrome patients. (PMID:28266547)
- Data suggest that membrane tethering mediated by endosomal RAB11A is drastically and selectively stimulated by its cognate Rab effectors, class V myosins (MYO5A and MYO5B), in a GTP-dependent manner. (RAB11A = ras-related GTPase Rab-11A; MYO5 = myosin class V) (PMID:28939769)
- human cytomegalovirus capsids associate with nuclear myosin Va and F-actin and that antagonism of myosin Va impairs capsid localization toward the nuclear rim and nuclear egress. (PMID:29298889)
- Depletion of myosin-Va significantly inhibits the attachment of preciliary vesicles to the distal appendages of the mother centriole and decreases cilia assembly. Myosin-Va functions upstream of EHD1- and Rab11-mediated ciliary vesicle formation. (PMID:29335527)
- MYO5A, having rare amino acid mutations p.R849Q and p.V1601G, was involved in the biological network of known MODY genes. (PMID:29670293)
- demonstrate that high expression of myosin 5a may be an independent prognostic factor in patients with Esophageal squamous cell carcinoma (PMID:29898384)
- Spermine synthase (SMS) localized together with myosin Va (MyoVa) in cytoplasmic vesicles of breast cancer MCF-7 and neuroblastoma SH-SY5Y cell lines, known to produce exosomes, supporting a role for MyoVa in SMS expression and targeting. (PMID:30733278)
- LUZP1 and the tumor suppressor EPLIN modulate actin stability to restrict primary cilia formation. (PMID:32496561)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | myo5aa | ENSDARG00000061635 |
| mus_musculus | Myo5a | ENSMUSG00000034593 |
| rattus_norvegicus | Myo5a | ENSRNOG00000058866 |
Paralogs (44): MYH13 (ENSG00000006788), MYO16 (ENSG00000041515), MYO9A (ENSG00000066933), MYO3B (ENSG00000071909), MYH7B (ENSG00000078814), MYO15A (ENSG00000091536), MYH7 (ENSG00000092054), MYO3A (ENSG00000095777), MYO9B (ENSG00000099331), MYH9 (ENSG00000100345), MYH14 (ENSG00000105357), MYH1 (ENSG00000109061), MYH3 (ENSG00000109063), MYH2 (ENSG00000125414), MYO1B (ENSG00000128641), MYO5C (ENSG00000128833), CGNL1 (ENSG00000128849), MYH8 (ENSG00000133020), MYH10 (ENSG00000133026), MYH11 (ENSG00000133392), MYO18B (ENSG00000133454), CCDC102A (ENSG00000135736), MYO1G (ENSG00000136286), MYO7A (ENSG00000137474), MYO1F (ENSG00000142347), CGN (ENSG00000143375), TMF1 (ENSG00000144747), MYH15 (ENSG00000144821), MYO10 (ENSG00000145555), CCDC102B (ENSG00000150636), MYO1E (ENSG00000157483), CCDC158 (ENSG00000163749), MYO1A (ENSG00000166866), MYO5B (ENSG00000167306), MYO7B (ENSG00000169994), MYO1H (ENSG00000174527), MYO1D (ENSG00000176658), MYO18A (ENSG00000196535), MYO6 (ENSG00000196586), MYH6 (ENSG00000197616)
Protein
Protein identifiers
Unconventional myosin-Va — Q9Y4I1 (reviewed: Q9Y4I1)
Alternative names: Dilute myosin heavy chain, non-muscle, Myosin heavy chain 12, Myosin-12, Myoxin
All UniProt accessions (30): A0A8I5KQ70, A0A8I5KRA4, A0A8I5KRL5, A0A8I5KRP9, A0A8I5KRS2, A0A8I5KTF1, A0A8I5KTM5, A0A8I5KUG0, A0A8I5KV14, A0A8I5KVK9, A0A8I5KWE1, A0A8I5KWM1, A0A8I5KX10, A0A8I5KXP8, A0A8I5KXS5, A0A8I5KXW9, A0A8I5KYM3, A0A8I5KYS5, A0A8I5QJA8, A0A8I5QJE6, A0A8I5QJF6, A0A8I5QKR9, A0A8I5QKS7, A0A8J8YWI7, E7ERV5, Q9Y4I1, F8WE88, G3V394, G3V3C9, H0Y3R0
UniProt curated annotations — full annotation on UniProt →
Function. Processive actin-based motor that can move in large steps approximating the 36-nm pseudo-repeat of the actin filament. Can hydrolyze ATP in the presence of actin, which is essential for its function as a motor protein. Involved in melanosome transport. Also mediates the transport of vesicles to the plasma membrane. May also be required for some polarization process involved in dendrite formation.
Subunit / interactions. May be a homodimer, which associates with multiple calmodulin or myosin light chains. Interacts with RIPL2, the interaction is required for its role in dendrite formation. Interacts with MLPH. Interacts with SYTL4. Interacts with MYRIP. Interacts with RAB10; mediates the transport to the plasma membrane of SLC2A4/GLUT4 storage vesicles. Interacts with FMR1; this interaction occurs in association with polyribosome.
Tissue specificity. Detected in melanocytes.
Disease relevance. Griscelli syndrome 1 (GS1) [MIM:214450] Rare autosomal recessive disorder that results in pigmentary dilution of the skin and hair, the presence of large clumps of pigment in hair shafts, silvery-gray hair and accumulation of melanosomes in melanocytes. GS1 patients show developmental delay, hypotonia and intellectual disability, without apparent immune abnormalities. The disease is caused by variants affecting the gene represented in this entry. Some patients who have MYO5A pathogenic variants and originally diagnosed with Griscelli syndrome 1 may rather have Elejalde syndrome.
Similarity. Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9Y4I1-1 | 1 | yes |
| Q9Y4I1-2 | 2 | |
| Q9Y4I1-3 | 3 |
RefSeq proteins (6): NP_000250, NP_001135967, NP_001369276, NP_001369277, NP_001369278, NP_001398064 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ_motif_EF-hand-BS | Binding_site |
| IPR001609 | Myosin_head_motor_dom-like | Domain |
| IPR002710 | Dilute_dom | Domain |
| IPR004009 | SH3_Myosin | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR036103 | MYSc_Myo5 | Domain |
| IPR036961 | Kinesin_motor_dom_sf | Homologous_superfamily |
| IPR037988 | Myo5a_CBD | Domain |
| IPR058662 | Myo5a/b_dom | Domain |
Pfam: PF00063, PF00612, PF01843, PF25966
Catalyzed reactions (Rhea), 1 shown:
- ATP + H2O = ADP + phosphate + H(+) (RHEA:13065)
UniProt features (70 total): helix 21, sequence conflict 12, domain 9, modified residue 6, strand 6, sequence variant 3, turn 3, region of interest 2, coiled-coil region 2, splice variant 2, initiator methionine 1, chain 1, compositionally biased region 1, binding site 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 4LX2 | X-RAY DIFFRACTION | 1.5 |
| 5JCY | X-RAY DIFFRACTION | 1.8 |
| 4D07 | X-RAY DIFFRACTION | 1.85 |
| 4LX1 | X-RAY DIFFRACTION | 1.87 |
| 5JCZ | X-RAY DIFFRACTION | 2.06 |
| 4J5L | X-RAY DIFFRACTION | 2.2 |
| 4LLI | X-RAY DIFFRACTION | 2.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9Y4I1-F1 | 77.03 | 0.25 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 163–170
Post-translational modifications (6): 2, 600, 1032, 1452, 1652, 1760
Function
Pathways and Gene Ontology
Reactome pathways
21 pathways
| ID | Pathway |
|---|---|
| R-HSA-1445148 | Translocation of SLC2A4 (GLUT4) to the plasma membrane |
| R-HSA-2029482 | Regulation of actin dynamics for phagocytic cup formation |
| R-HSA-264876 | Insulin processing |
| R-HSA-9664422 | FCGR3A-mediated phagocytosis |
| R-HSA-9824585 | Regulation of MITF-M-dependent genes involved in pigmentation |
| R-HSA-1266738 | Developmental Biology |
| R-HSA-1643685 | Disease |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-2029480 | Fcgamma receptor (FCGR) dependent phagocytosis |
| R-HSA-2980736 | Peptide hormone metabolism |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-5663205 | Infectious disease |
| R-HSA-9658195 | Leishmania infection |
| R-HSA-9664407 | Parasite infection |
| R-HSA-9664417 | Leishmania phagocytosis |
| R-HSA-9730414 | MITF-M-regulated melanocyte development |
| R-HSA-9824443 | Parasitic Infection Pathways |
| R-HSA-9856651 | MITF-M-dependent gene expression |
MSigDB gene sets: 419 (showing top):
GOBP_REGULATION_OF_GOLGI_ORGANIZATION, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_PIGMENT_GRANULE_LOCALIZATION, GOBP_VESICLE_LOCALIZATION, GOCC_SECRETORY_GRANULE, GOZGIT_ESR1_TARGETS_DN, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP, GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_UP, GOBP_CELLULAR_PIGMENTATION, GOBP_VESICLE_MEDIATED_TRANSPORT, GOCC_RUFFLE, REACTOME_MEMBRANE_TRAFFICKING, GOMF_GTPASE_BINDING, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND
GO Biological Process (11): post-Golgi vesicle-mediated transport (GO:0006892), endocytosis (GO:0006897), actin filament organization (GO:0007015), protein transport (GO:0015031), vesicle-mediated transport (GO:0016192), actin filament-based movement (GO:0030048), vesicle transport along actin filament (GO:0030050), melanosome transport (GO:0032402), cellular response to insulin stimulus (GO:0032869), protein localization to plasma membrane (GO:0072659), intracellular signal transduction (GO:0035556)
GO Molecular Function (13): microfilament motor activity (GO:0000146), RNA binding (GO:0003723), calmodulin binding (GO:0005516), ATP binding (GO:0005524), ATP hydrolysis activity (GO:0016887), small GTPase binding (GO:0031267), actin filament binding (GO:0051015), nucleotide binding (GO:0000166), cytoskeletal motor activity (GO:0003774), actin binding (GO:0003779), catalytic activity (GO:0003824), GTPase activator activity (GO:0005096), protein binding (GO:0005515)
GO Cellular Component (21): ruffle (GO:0001726), cytoplasm (GO:0005737), cytosol (GO:0005829), actin cytoskeleton (GO:0015629), membrane (GO:0016020), myosin complex (GO:0016459), growth cone (GO:0030426), filopodium tip (GO:0032433), insulin-responsive compartment (GO:0032593), melanosome (GO:0042470), neuron projection (GO:0043005), extracellular exosome (GO:0070062), lysosome (GO:0005764), early endosome (GO:0005769), late endosome (GO:0005770), peroxisome (GO:0005777), endoplasmic reticulum (GO:0005783), actin filament (GO:0005884), cytoplasmic vesicle (GO:0031410), vesicle (GO:0031982), recycling endosome (GO:0055037)
Reactome top-level categories
Rollup of top-15 pathways:
| Category | Pathways |
|---|---|
| Membrane Trafficking | 1 |
| Fcgamma receptor (FCGR) dependent phagocytosis | 1 |
| Peptide hormone metabolism | 1 |
| Leishmania phagocytosis | 1 |
| MITF-M-dependent gene expression | 1 |
| Immune System | 1 |
| Vesicle-mediated transport | 1 |
| Innate Immune System | 1 |
| Metabolism of proteins | 1 |
| Disease | 1 |
| Parasitic Infection Pathways | 1 |
| Leishmania infection | 1 |
| Parasite infection | 1 |
| Developmental Biology | 1 |
| Infectious disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| cytoplasm | 3 |
| transport | 2 |
| intracellular anatomical structure | 2 |
| ATP-dependent activity | 2 |
| molecular_function | 2 |
| plasma membrane bounded cell projection | 2 |
| actin cytoskeleton | 2 |
| endosome | 2 |
| Golgi vesicle transport | 1 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| intracellular protein localization | 1 |
| establishment of protein localization | 1 |
| cellular process | 1 |
| actin filament-based process | 1 |
| actin filament-based movement | 1 |
| actin filament-based transport | 1 |
| vesicle cytoskeletal trafficking | 1 |
| melanosome localization | 1 |
| establishment of melanosome localization | 1 |
| pigment granule transport | 1 |
| response to insulin | 1 |
| cellular response to peptide hormone stimulus | 1 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| signal transduction | 1 |
| cytoskeletal motor activity | 1 |
| polypeptide conformation or assembly isomerase activity | 1 |
| nucleic acid binding | 1 |
| protein binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| ribonucleoside triphosphate phosphatase activity | 1 |
| GTPase binding | 1 |
| actin binding | 1 |
Protein interactions and networks
STRING
3915 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MYO5A | MLPH | Q9BV36 | 999 |
| MYO5A | RAB27A | P51159 | 999 |
| MYO5A | MYRIP | Q8NFW9 | 988 |
| MYO5A | MREG | Q8N565 | 887 |
| MYO5A | RAB27B | O00194 | 882 |
| MYO5A | RAB10 | P61026 | 846 |
| MYO5A | GRIA1 | P42261 | 834 |
| MYO5A | FMR1 | Q06787 | 828 |
| MYO5A | NEFL | P07196 | 823 |
| MYO5A | SYTL1 | Q8IYJ3 | 819 |
| MYO5A | RPH3A | Q9Y2J0 | 793 |
| MYO5A | RAB11A | P24410 | 791 |
| MYO5A | RAB3A | P20336 | 789 |
| MYO5A | SYTL2 | Q9HCH5 | 784 |
| MYO5A | RAB8A | P24407 | 755 |
IntAct
144 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ARRDC1 | WWP2 | psi-mi:“MI:0914”(association) | 0.850 |
| DYNLL1 | BLTP3B | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| PKN3 | ARHGAP10 | psi-mi:“MI:0914”(association) | 0.680 |
| EID1 | FBXO21 | psi-mi:“MI:0914”(association) | 0.650 |
| MAPK7 | PFDN6 | psi-mi:“MI:0914”(association) | 0.640 |
| DYNLL2 | BLTP3B | psi-mi:“MI:0914”(association) | 0.640 |
| SSH1 | YWHAE | psi-mi:“MI:0914”(association) | 0.530 |
| PBXIP1 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| PEX19 | FAM20B | psi-mi:“MI:0914”(association) | 0.530 |
| UBE2O | RPL23 | psi-mi:“MI:0914”(association) | 0.530 |
| MYL2 | MYL5 | psi-mi:“MI:0914”(association) | 0.530 |
| CREB3 | MYO9A | psi-mi:“MI:0914”(association) | 0.530 |
| RBMX2 | WDR46 | psi-mi:“MI:0914”(association) | 0.530 |
| ZNRD2 | CCDC85C | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| FOS | MYO1C | psi-mi:“MI:2364”(proximity) | 0.480 |
| ACTA1 | RAB27A | psi-mi:“MI:0915”(physical association) | 0.400 |
| Actb | psi-mi:“MI:0914”(association) | 0.350 | |
| Flnb | RPL22 | psi-mi:“MI:0914”(association) | 0.350 |
| LIMA1 | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 |
| SYNPO | LMO7 | psi-mi:“MI:0914”(association) | 0.350 |
| MYO5C | CLIC1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (274): MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYH11 (Co-fractionation), MYO5A (Co-fractionation), MYO5A (Co-fractionation), PLS3 (Co-fractionation), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS), MYO5A (Affinity Capture-MS)
ESM2 similar proteins: A0A0G2JTR4, A0MQH0, A2RSQ0, A6QNS3, B2RTY4, E7EZG2, E7F3F0, E9PTA2, F4I507, O43795, O54865, P09851, P16068, P20595, P20936, P24786, P46735, P50904, P83900, P85298, Q02153, Q02440, Q05096, Q09LZ8, Q12979, Q13459, Q13507, Q16288, Q25BN1, Q49A26, Q4ZHR9, Q5R6F2, Q5SSL4, Q5ZLX4, Q63358, Q6TUI4, Q6ZUT9, Q8C170, Q8NHH1, Q91X46
Diamond homologs: A2AQP0, A7E2Y1, F1PT61, F4I507, F4I5Q6, F4IVR7, G3UW82, K7U9N8, O08638, O14157, O94477, P02563, P02564, P02565, P02566, P02567, P04461, P05659, P05661, P08799, P08964, P10587, P11055, P12844, P12845, P12847, P12882, P12883, P13533, P13535, P13538, P13539, P13540, P13541, P13542, P14105, P19524, P21271, P24733, P32492
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MYO5A | up-regulates | Dense-core_vesicle_exocytosis | |
| MYO5A | “up-regulates activity” | ACTB | binding |
| MYO5A | “up-regulates activity” | VAMP2 | binding |
| AKT2 | “up-regulates activity” | MYO5A | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 186 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Striated Muscle Contraction | 7 | 17.4× | 9e-05 |
| Regulation of PLK1 Activity at G2/M Transition | 7 | 7.2× | 1e-02 |
| RHO GTPase Effectors | 9 | 4.9× | 1e-02 |
| Signaling by Rho GTPases | 13 | 3.6× | 1e-02 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 13 | 3.5× | 1e-02 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| actin filament organization | 10 | 7.2× | 2e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 4 cancer types — BRCA, HCC, LUNG, NBL.
Clinical variants and AI predictions
ClinVar
534 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 8 |
| Likely pathogenic | 3 |
| Uncertain significance | 238 |
| Likely benign | 118 |
| Benign | 122 |
Top pathogenic / likely-pathogenic (11)
| Variant ID | HGVS | Classification |
|---|---|---|
| 14069 | NM_001382347.1(MYO5A):c.2332C>T (p.Arg778Ter) | Pathogenic |
| 14070 | MYO5A, 47-BP INS, NT4634 | Pathogenic |
| 14071 | NM_001382347.1(MYO5A):c.4239+871_4315-331del | Pathogenic |
| 1686909 | NM_001382347.1(MYO5A):c.2110C>T (p.Gln704Ter) | Pathogenic |
| 1686910 | NM_001382347.1(MYO5A):c.463C>T (p.Arg155Ter) | Pathogenic |
| 242881 | NM_001382347.1(MYO5A):c.4200C>G (p.Ser1400Arg) | Pathogenic |
| 4805515 | NM_001382347.1(MYO5A):c.697C>T (p.Arg233Ter) | Pathogenic |
| 561060 | NM_001382347.1(MYO5A):c.2012+1G>T | Pathogenic |
| 1334000 | NM_001382347.1(MYO5A):c.3043C>T (p.Arg1015Ter) | Likely pathogenic |
| 4277733 | NM_001382347.1(MYO5A):c.655C>T (p.Arg219Cys) | Likely pathogenic |
| 546756 | NM_001382347.1(MYO5A):c.855dup (p.Asn286Ter) | Likely pathogenic |
SpliceAI
6149 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 15:52314117:TCTTA:T | donor_loss | 1.0000 |
| 15:52314118:CTTA:C | donor_loss | 1.0000 |
| 15:52314119:TTAC:T | donor_loss | 1.0000 |
| 15:52314120:TACCT:T | donor_loss | 1.0000 |
| 15:52314121:ACC:A | donor_loss | 1.0000 |
| 15:52314200:CAAT:C | acceptor_gain | 1.0000 |
| 15:52314202:ATCT:A | acceptor_loss | 1.0000 |
| 15:52314203:TCTG:T | acceptor_loss | 1.0000 |
| 15:52314204:C:CA | acceptor_loss | 1.0000 |
| 15:52314204:C:CC | acceptor_gain | 1.0000 |
| 15:52317088:T:TA | donor_gain | 1.0000 |
| 15:52317218:TGTAC:T | acceptor_gain | 1.0000 |
| 15:52317219:GTAC:G | acceptor_gain | 1.0000 |
| 15:52317220:TAC:T | acceptor_gain | 1.0000 |
| 15:52317220:TACCT:T | acceptor_loss | 1.0000 |
| 15:52317221:AC:A | acceptor_gain | 1.0000 |
| 15:52317221:ACC:A | acceptor_loss | 1.0000 |
| 15:52317222:CC:C | acceptor_gain | 1.0000 |
| 15:52317223:C:CC | acceptor_gain | 1.0000 |
| 15:52317224:T:A | acceptor_loss | 1.0000 |
| 15:52317225:A:AC | acceptor_gain | 1.0000 |
| 15:52317225:A:C | acceptor_gain | 1.0000 |
| 15:52319055:CTCA:C | donor_loss | 1.0000 |
| 15:52319056:TCAC:T | donor_loss | 1.0000 |
| 15:52319057:CACCT:C | donor_loss | 1.0000 |
| 15:52319058:A:C | donor_loss | 1.0000 |
| 15:52319343:C:CC | acceptor_gain | 1.0000 |
| 15:52321353:CCTTA:C | donor_loss | 1.0000 |
| 15:52321354:CTTAC:C | donor_loss | 1.0000 |
| 15:52321355:TTACC:T | donor_loss | 1.0000 |
AlphaMissense
12477 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 15:52317117:T:A | Q1755H | 1.000 |
| 15:52317117:T:G | Q1755H | 1.000 |
| 15:52317121:A:G | L1754S | 1.000 |
| 15:52317124:A:G | L1753P | 1.000 |
| 15:52317130:G:T | A1751D | 1.000 |
| 15:52317205:A:G | L1726P | 1.000 |
| 15:52317222:C:A | R1720S | 1.000 |
| 15:52317222:C:G | R1720S | 1.000 |
| 15:52319060:C:A | R1720M | 1.000 |
| 15:52319060:C:G | R1720T | 1.000 |
| 15:52319072:C:A | G1716V | 1.000 |
| 15:52319072:C:T | G1716D | 1.000 |
| 15:52319073:C:A | G1716C | 1.000 |
| 15:52319073:C:G | G1716R | 1.000 |
| 15:52319080:C:A | W1713C | 1.000 |
| 15:52319080:C:G | W1713C | 1.000 |
| 15:52319082:A:G | W1713R | 1.000 |
| 15:52319082:A:T | W1713R | 1.000 |
| 15:52319086:G:C | C1711W | 1.000 |
| 15:52319088:A:G | C1711R | 1.000 |
| 15:52319099:C:G | R1707P | 1.000 |
| 15:52319102:A:G | L1706P | 1.000 |
| 15:52319105:A:G | L1705P | 1.000 |
| 15:52319108:A:G | L1704P | 1.000 |
| 15:52319330:A:G | L1630P | 1.000 |
| 15:52321456:A:C | F1593L | 1.000 |
| 15:52321456:A:T | F1593L | 1.000 |
| 15:52321458:A:G | F1593L | 1.000 |
| 15:52323400:G:C | N1560K | 1.000 |
| 15:52323400:G:T | N1560K | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000003140 (15:52413769 C>G), RS1000025403 (15:52473743 T>C), RS1000025611 (15:52371716 A>G), RS1000043811 (15:52325360 C>A), RS1000047105 (15:52492932 A>G), RS1000078791 (15:52407656 C>T), RS1000082979 (15:52460751 G>A,C), RS1000087628 (15:52449134 A>C), RS1000088166 (15:52507888 T>C,G), RS1000117555 (15:52426322 T>G), RS1000122359 (15:52339625 A>G), RS1000123517 (15:52364681 A>G), RS1000131681 (15:52512818 TC>T), RS1000194417 (15:52508568 T>C), RS1000253899 (15:52512792 T>C,G)
Disease associations
OMIM: gene MIM:160777 | disease phenotypes: MIM:214450, MIM:609227
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Griscelli syndrome type 1 | Definitive | Autosomal recessive |
| Griscelli syndrome type 3 | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Griscelli syndrome type 1 | Definitive | AR |
Mondo (7): Griscelli syndrome type 1 (MONDO:0008962), Griscelli syndrome type 3 (MONDO:0012220), dystonic disorder (MONDO:0003441), pathologic nystagmus (MONDO:0004843), congenital heart disease (MONDO:0005453), intellectual disability (MONDO:0001071), hereditary breast ovarian cancer syndrome (MONDO:0003582)
Orphanet (5): Griscelli syndrome (Orphanet:381), Griscelli syndrome type 1 (Orphanet:79476), Griscelli syndrome type 3 (Orphanet:79478), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
46 total (30 of 46 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000486 | Strabismus |
| HP:0000488 | Retinopathy |
| HP:0000545 | Myopia |
| HP:0000587 | Abnormal optic nerve morphology |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000651 | Diplopia |
| HP:0001008 | Accumulation of melanosomes in melanocytes |
| HP:0001010 | Hypopigmentation of the skin |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001276 | Hypertonia |
| HP:0001290 | Generalized hypotonia |
| HP:0001321 | Cerebellar hypoplasia |
| HP:0001328 | Specific learning disability |
| HP:0001337 | Tremor |
| HP:0002063 | Rigidity |
| HP:0002120 | Cerebral cortical atrophy |
| HP:0002205 | Recurrent respiratory infections |
| HP:0002216 | Premature graying of hair |
| HP:0002218 | Silver-gray hair |
| HP:0002220 | Melanin pigment aggregation in hair shafts |
| HP:0002226 | White eyebrow |
| HP:0002227 | White eyelashes |
| HP:0002334 | Abnormal cerebellar vermis morphology |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002118_4 | Metabolite levels (Pyroglutamine) | 2.000000e-06 |
| GCST90002395_171 | Mean platelet volume | 7.000000e-10 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005408 | pyroglutamine measurement |
MeSH disease descriptors (7)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020821 | Dystonic Disorders | C10.228.662.300 |
| D006330 | Heart Defects, Congenital | C14.240.400; C14.280.400; C16.131.240.400 |
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D009759 | Nystagmus, Pathologic | C10.292.562.675; C11.590.400 |
| C537301 | Griscelli syndrome type 1 (supp.) | |
| C537303 | Griscelli syndrome type 3 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
61 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases methylation | 5 |
| sodium arsenite | affects response to substance, increases expression | 3 |
| bisphenol A | decreases methylation, affects cotreatment, decreases expression | 2 |
| Resveratrol | affects cotreatment, decreases expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
| geldanamycin | increases expression | 1 |
| lead acetate | increases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| sodium bichromate | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| periodate-oxidized adenosine | affects expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| flavone | increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 2-palmitoylglycerol | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| dorsomorphin | increases expression, affects cotreatment | 1 |
| bisphenol S | decreases expression, affects cotreatment | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Bortezomib | increases response to substance | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | increases expression | 1 |
| Vorinostat | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Arsenic | affects methylation | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00142259 | PHASE4 | UNKNOWN | Efficacy and Safety of DBS of the GPi in Patients With Primary Generalized and Segmental Dystonia |
| NCT00950196 | PHASE4 | COMPLETED | Amantadine for Improving Neurologic Symptoms in Ataxia-Telangiectasia |
| NCT00998660 | PHASE4 | COMPLETED | RECHARGE Sub-Study to the Implantable Systems Performance Registry (ISPR) |
| NCT02263417 | PHASE4 | COMPLETED | A Randomized Controlled Trail Comparing Subthalamic and Pallidal Deep Brain Stimulation for Dystonia |
| NCT00668824 | PHASE4 | UNKNOWN | Improved Diagnosis of Congenital Heart Disease by Magnetic Resonance Imaging Using Vasovist |
| NCT01368705 | PHASE4 | COMPLETED | Nitrogen Balance in Infants After Post Cardiothoracic Surgery |
| NCT01619982 | PHASE4 | COMPLETED | Pre-operative Prophylaxis With Vancomycin and Cefazolin in Pediatric Cardiovascular Surgery Patients |
| NCT02122679 | PHASE4 | WITHDRAWN | Tranexamic Acid Effect on Platelet Aggregation Following Infant Cardiopulmonary Bypass |
| NCT02527811 | PHASE4 | UNKNOWN | Ulinastatin Injection in in Pediatric Patients Undergoing Open Heart Surgery |
| NCT03014700 | PHASE4 | COMPLETED | Fibrinogen Concentrate vs Cryoprecipitate |
| NCT03408340 | PHASE4 | TERMINATED | Paravertebral Nerve Blocks in Neonates |
| NCT03630796 | PHASE4 | UNKNOWN | Effect of Sevoflurane in Postoperative Troponin I Levels in Children Undergoing Congenital Heart Defects Surgery |
| NCT03667703 | PHASE4 | COMPLETED | Stress Ulcer Prophylaxis Versus Placebo in Critically Ill Infants With Congenital Heart Disease |
| NCT04453761 | PHASE4 | UNKNOWN | Thiamine Influenced on Substrate Energy Effectiveness in Indonesian Children Undergoing Cardiopulmonary Bypass |
| NCT06668389 | PHASE4 | RECRUITING | Sodium-Glucose Cotransporter 2 Inhibitors for Repaired Tetralogy of Fallot Patients for Enhancement of Cardio-Pulmonary Status Trial |
| NCT07499154 | PHASE4 | NOT_YET_RECRUITING | Perioperative Lidocaine for Lung Protection in Infants Undergoing Cardiac Surgery |
| NCT00169403 | PHASE3 | UNKNOWN | Pallidal Stimulation in Patients With Idiopathic Generalised Dystonia |
| NCT03232320 | PHASE3 | COMPLETED | Meditoxin® Treatment in Patients With Cervical Dystonia |
| NCT00000470 | PHASE3 | COMPLETED | Infant Heart Surgery: Central Nervous System Sequelae of Circulatory Arrest |
| NCT00000494 | PHASE3 | COMPLETED | Management of Patent Ductus in Premature Infants |
| NCT01134302 | PHASE3 | UNKNOWN | Hybrid Versus Norwood Management Strategies in Infants Undergoing Single Ventricle Palliation |
| NCT01607983 | PHASE3 | WITHDRAWN | Effects of Pulmonary Vasodilation Upon VA Coupling in Fontan Patients |
| NCT01662011 | PHASE3 | UNKNOWN | Application of Neurally Adjusted Ventilatory Assist to Children After Congenital Cardiac Surgery |
| NCT02320669 | PHASE3 | COMPLETED | Phase 3 Triiodothyronine Supplementation for Infants After Cardiopulmonary Bypass |
| NCT02615262 | PHASE3 | COMPLETED | Intraoperative Dexamethasone in Pediatric Cardiac Surgery |
| NCT03153137 | PHASE3 | COMPLETED | Clinical Study Assessing the Efficacy and Safety of Macitentan in Fontan-palliated Subjects |
| NCT03154476 | PHASE3 | COMPLETED | Role of Sildenafil for Fontan Associated Liver Disease (SiFALD) Study |
| NCT04536194 | PHASE3 | COMPLETED | Dopamine Versus Norepinephrine Under General Anesthesia |
| NCT04702373 | PHASE3 | ACTIVE_NOT_RECRUITING | Training in Exercise Activities and Motion for Growth (TEAM 4 Growth) RCT |
| NCT05049590 | PHASE3 | COMPLETED | Acute Normovolemic Hemodilution in Complex Cardiac Surgery |
| NCT06406517 | PHASE3 | UNKNOWN | Comparative Effectiveness of Gadopiclenol for Evaluation of Adult Congenital Heart Anatomy and Hemodynamics |
| NCT06693674 | PHASE3 | RECRUITING | Effect of Sacubitril-Valsartan on Cardiac Structure and Function |
| NCT06955260 | PHASE3 | NOT_YET_RECRUITING | SGLT2 Inhibition With Empagliflozin in Fontan Circulatory Failure |
| NCT00001784 | PHASE2 | COMPLETED | Mexiletine for the Treatment of Focal Dystonia |
| NCT00105430 | PHASE2 | COMPLETED | Deep Brain Stimulation for Cervical Dystonia |
| NCT00106782 | PHASE2 | COMPLETED | Transcranial Electrical Polarization to Treat Focal Hand Dystonia |
| NCT00122044 | PHASE2 | COMPLETED | Childhood Hypertonia of Central Origin: A Trial of Anticholinergic Treatment Effects |
| NCT00169338 | PHASE2 | COMPLETED | Pallidal Stimulation in Patients With Post-anoxic and Idiopathic Dystonia |
| NCT00331669 | PHASE2 | UNKNOWN | Efficacy and Safety of Deep Brain Stimulation (DBS) of the Pallidal (GPi) in Patients With Tardive Dystonia |
| NCT02107261 | PHASE2 | COMPLETED | Incobotulinum Toxin A (Xeomin®) As A Treatment For Focal Task-Specific Dystonia Of The Musician’s Hand |
Related Atlas pages
- Associated diseases: Griscelli syndrome type 1, Griscelli syndrome type 3
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): dystonic disorder, Griscelli syndrome type 1, Griscelli syndrome type 3, pathologic nystagmus