MYO6
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Also known as KIAA0389
Summary
MYO6 (myosin VI, HGNC:7605) is a protein-coding gene on chromosome 6q14.1, encoding Unconventional myosin-VI (Q9UM54). Myosins are actin-based motor molecules with ATPase activity.
This gene encodes a reverse-direction motor protein that moves toward the minus end of actin filaments and plays a role in intracellular vesicle and organelle transport. The protein consists of a motor domain containing an ATP- and an actin-binding site and a globular tail which interacts with other proteins. This protein maintains the structural integrity of inner ear hair cells and mutations in this gene cause non-syndromic autosomal dominant and recessive hearing loss. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
Source: NCBI Gene 4646 — RefSeq curated summary.
At a glance
- Gene–disease (curated): nonsyndromic genetic hearing loss (Definitive, ClinGen) — +5 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 970 total — 55 pathogenic, 45 likely-pathogenic
- Phenotypes (HPO): 8
- MANE Select transcript:
NM_004999
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7605 |
| Approved symbol | MYO6 |
| Name | myosin VI |
| Location | 6q14.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA0389 |
| Ensembl gene | ENSG00000196586 |
| Ensembl biotype | protein_coding |
| OMIM | 600970 |
| Entrez | 4646 |
Gene structure
Transcript identifiers
Ensembl transcripts: 26 — 19 protein_coding, 6 nonsense_mediated_decay, 1 retained_intron
ENST00000369975, ENST00000369977, ENST00000369985, ENST00000430435, ENST00000462633, ENST00000615563, ENST00000627432, ENST00000653423, ENST00000653917, ENST00000660420, ENST00000662184, ENST00000662603, ENST00000663400, ENST00000664209, ENST00000664640, ENST00000671923, ENST00000672093, ENST00000672162, ENST00000927893, ENST00000927894, ENST00000927895, ENST00000927896, ENST00000927897, ENST00000947980, ENST00000947981, ENST00000947982
RefSeq mRNA: 7 — MANE Select: NM_004999
NM_001300899, NM_001368136, NM_001368137, NM_001368138, NM_001368865, NM_001368866, NM_004999
CCDS: CCDS34487, CCDS75481, CCDS93948, CCDS93949, CCDS93950
Canonical transcript exons
ENST00000369977 — 35 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000797963 | 75892530 | 75892690 |
| ENSE00000797964 | 75907605 | 75907708 |
| ENSE00001027382 | 75891228 | 75891306 |
| ENSE00001027384 | 75898373 | 75898411 |
| ENSE00001027392 | 75895231 | 75895260 |
| ENSE00001413891 | 75914813 | 75919537 |
| ENSE00001426804 | 75749239 | 75749423 |
| ENSE00002144831 | 75861023 | 75861095 |
| ENSE00002148953 | 75848351 | 75848531 |
| ENSE00002150623 | 75890057 | 75890265 |
| ENSE00002155619 | 75817501 | 75817664 |
| ENSE00002158868 | 75857097 | 75857254 |
| ENSE00002161121 | 75886004 | 75886094 |
| ENSE00002162496 | 75866526 | 75866621 |
| ENSE00002162690 | 75911672 | 75911698 |
| ENSE00002166761 | 75858902 | 75858993 |
| ENSE00002170619 | 75830416 | 75830545 |
| ENSE00002171556 | 75844897 | 75844977 |
| ENSE00002172610 | 75908496 | 75908627 |
| ENSE00002174053 | 75886844 | 75886994 |
| ENSE00002174681 | 75841214 | 75841378 |
| ENSE00002179233 | 75866932 | 75867105 |
| ENSE00002182048 | 75835901 | 75835956 |
| ENSE00002186410 | 75822782 | 75822851 |
| ENSE00002187366 | 75832842 | 75832947 |
| ENSE00002189621 | 75840585 | 75840682 |
| ENSE00002194935 | 75855139 | 75855283 |
| ENSE00002195738 | 75862596 | 75862723 |
| ENSE00002198337 | 75914063 | 75914281 |
| ENSE00002200953 | 75828540 | 75828613 |
| ENSE00003518307 | 75879820 | 75879950 |
| ENSE00003528802 | 75880043 | 75880120 |
| ENSE00003604385 | 75873207 | 75873300 |
| ENSE00003637744 | 75881689 | 75881818 |
| ENSE00003637880 | 75870647 | 75870685 |
Expression profiles
Bgee: expression breadth ubiquitous, 278 present calls, max score 97.38.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 24.0838 / max 922.6606, expressed in 1654 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 68643 | 15.0182 | 1609 |
| 68645 | 4.4309 | 1354 |
| 68642 | 2.1385 | 1111 |
| 68644 | 1.7842 | 1002 |
| 68648 | 0.7120 | 151 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| amniotic fluid | UBERON:0000173 | 97.38 | gold quality |
| medial globus pallidus | UBERON:0002477 | 96.99 | gold quality |
| corpus callosum | UBERON:0002336 | 96.97 | gold quality |
| globus pallidus | UBERON:0001875 | 96.85 | gold quality |
| sural nerve | UBERON:0015488 | 96.83 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 96.70 | gold quality |
| pancreatic ductal cell | CL:0002079 | 96.16 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 96.16 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 95.89 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 95.83 | gold quality |
| renal medulla | UBERON:0000362 | 95.74 | gold quality |
| corpus epididymis | UBERON:0004359 | 95.74 | gold quality |
| jejunal mucosa | UBERON:0000399 | 95.66 | gold quality |
| endothelial cell | CL:0000115 | 95.47 | gold quality |
| seminal vesicle | UBERON:0000998 | 95.38 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 95.09 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 95.07 | gold quality |
| pylorus | UBERON:0001166 | 94.98 | gold quality |
| caput epididymis | UBERON:0004358 | 94.90 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 94.88 | gold quality |
| bronchial epithelial cell | CL:0002328 | 94.84 | gold quality |
| duodenum | UBERON:0002114 | 94.68 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 94.25 | gold quality |
| islet of Langerhans | UBERON:0000006 | 94.09 | gold quality |
| nephron tubule | UBERON:0001231 | 94.02 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 93.91 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 93.63 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 93.52 | gold quality |
| oral cavity | UBERON:0000167 | 93.51 | gold quality |
| squamous epithelium | UBERON:0006914 | 93.48 | gold quality |
Single-cell (SCXA)
Detected in 9 experiment(s), a significant marker in 6.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-75367 | yes | 480.39 |
| E-HCAD-10 | yes | 29.98 |
| E-MTAB-7316 | yes | 22.90 |
| E-CURD-112 | yes | 14.68 |
| E-CURD-114 | yes | 7.04 |
| E-MTAB-6075 | no | 2581.06 |
| E-GEOD-106540 | no | 864.24 |
| E-MTAB-8271 | no | 280.04 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): POU4F3, TP53
miRNA regulators (miRDB)
180 targeting MYO6, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-12118 | 100.00 | 65.88 | 1270 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-513B-5P | 99.99 | 69.96 | 2150 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-186-5P | 99.99 | 70.83 | 3707 |
| HSA-MIR-511-3P | 99.99 | 68.85 | 1467 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-3173-3P | 99.98 | 66.49 | 1217 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-6891-5P | 99.98 | 66.53 | 1372 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
Literature-anchored findings (GeneRIF, showing 40)
- In families with recessively inherited deafness, DFNB37, our sequence analyses of MYO6 reveal a frameshift mutation (36-37insT), a nonsense mutation (R1166X), and a missense mutation (E216V) (PMID:12687499)
- Results report the effects of the C442Y mutation on the kinetics of the actomyosin ATP hydrolysis mechanism and motor function of myosin VI. (PMID:15123708)
- Inhibiting myosin VI expression in high-grade ovarian carcinoma cells impeded cell spreading and migration in vitro; optical imaging and histopathologic studies revealed that inhibiting myosin VI expression reduces tumor dissemination in nude mice (PMID:15146066)
- myosin VI and Dab2 facilitate CFTR endocytosis by a mechanism that requires actin filaments (PMID:15247260)
- a novel function for p53 in the maintenance of Golgi complex integrity and for myosin VI in the p53-dependent prosurvival pathway. (PMID:16507995)
- Myosin VI modulates RNAPII-dependent transcription of active genes, implicating the possibility of an actin-myosin based mechanism of transcription. (PMID:16949370)
- These results support that myosin VI is critical in maintaining the malignant properties of the majority of human prostate cancers diagnosed today. (PMID:17071605)
- We have identified three binding sites in the Myosin VI carboxy-terminal: a WWY motif for Disabled-2, a RRL motif for glucose-transporter binding protein and optineurin binding and a site that binds specifically to PtdIns(4,5)P2-containing liposomes. (PMID:17187061)
- results suggest that myosin VI-T6BP-NDP52 complexes may play a role in coordinating cytokine signalling and membrane transport pathways with actin filament organisation and cell adhesion (PMID:17635994)
- Results are consistent with vesicle-associated myosin VI existing as a processive dimer, capable of its known trafficking function. (PMID:17683200)
- Myosin VI and LMTK2 are required for the transport of cargo, such as the Transferrin Receptor, from early endosomes to the endocytic recycling compartment. (PMID:18029400)
- inner ear hair cells are sensitive to changes in expression levels of MYO6 (PMID:18212818)
- In conclusion, a novel nonsense MYO6 mutation causes post-lingual, slowly progressive autosomal dominant nonsyndromic moderate to severe hearing loss in a Danish family. (PMID:18348273)
- Results show that BREK is critical for the transition of endocytosed membrane vesicles from early endosomes to recycling endosomes and also suggest an involvement of myosin VI in this pathway. (PMID:18429820)
- Golgi apparatus in prostate cancer cells differs from the normal Golgi by elevated levels of two molecules, GOLPH2 and MYO6. (PMID:18543251)
- Data show that downregulation of myosin VI expression results in a significant reduction in PSA and VEGF secretion in LNCaP cells, and the intracellular targeting seems to involve myosin VI-interacting proteins, GIPC and LMTK2 and Dab2. (PMID:19855435)
- This study describes the phenotype of 2 Belgian families with SNHL linked to DFNA22, both with a pathogenic change in the deafness gene MYO6. (PMID:19893302)
- Our data indicate that miR-143 and miR-145 are involved in the regulation of MYO6 expression and possibly in the development of prostate cancer. (PMID:20353999)
- Myosin VI is differentially regulated by DNA damage in p53- and cell type-dependent manners. (PMID:20576604)
- In migratory cells ablation of myosin VI or optineurin inhibits the polarized delivery of the epidermal growth factor receptor into the leading edge and leads to profound defects in lamellipodia formation. (PMID:20604900)
- Study suggests 2 tilt angles during myo6 stepping, corresponding to the pre- & post powerstroke states regulating leading head; large steps with hand-over-hand mechanism & small steps with inchworm-like mechanism increasing in frequency with ADP. (PMID:20850010)
- results suggest a novel role for myosin VI and optineurin in regulation of fusion pores formed between secretory vesicles and the plasma membrane during the final stages of secretion (PMID:21148290)
- Role of insert-1 of myosin VI in modulating nucleotide affinity. (PMID:21278381)
- In this review, we describe the structure, kinetic properties and functions proposed for myosin VI, and present current hypotheses on the mechanisms of functioning of this unique protein in vivo. (PMID:21735821)
- Studies from crystallographic structures of myosin VI have revealed that rearrangements within the converter subdomain occur. (PMID:22171985)
- myosin VI regulates the organization of actin dynamics at the surface of a specialized organelle (PMID:22321127)
- detailed kinetic characterization of the myosin-6 motor domain (PMID:22884421)
- analysis of the dynamic exchange of myosin VI on endocytic structures (PMID:22992744)
- The central regions of the cadherin tail adjacent to the juxtamembrane sequence also display binding activity for Myo VI-CBD. (PMID:23007415)
- It was shown that that myosin VI, in concert with Tom1, plays a crucial role in autophagy. Tom1 was identified as a myosin VI binding partner on endosomes. (PMID:23023224)
- Report Dutch family with progressive autosomal dominant sensorineural hearing loss caused by a mutation in MYO6 resembling presbyacusis. (PMID:23340379)
- we identified a novel MYO6 mutation at the splice acceptor site of exon 7 (c.554-1G>A) in an extended German family with autosomal dominant postlingual non-syndromic hearing impairment. (PMID:23635807)
- Myo6 plays a critical role in the fusion of endosome/lysosome in Rmc epithelial cells. Deficiency of myo6 compromises the epithelial barrier function (PMID:24028494)
- Data indicate nine novel mutations in the genes encoding myosin VI, myosin VIIA and myosin XVA in hearing-impaired individuals from Israeli Jewish and Palestinian Arab families. (PMID:24105371)
- Myosin VI mediates the movement of NHE3 to the microvillus in intestinal epithelial cells. (PMID:24928903)
- Three mutations (p.R825X, p.R991X and Q918fsX941) produce a premature truncation of the myosin VI protein. p.R205Q, was associated with diminished actin-activated ATPase activity and actin gliding velocity of myosin VI in an in vitro analysis. (PMID:25080041)
- In myopathies associated with fiber atrophy, the amount of MVI was enhanced and its localization in affected fibers was changed. (PMID:25125183)
- The frameshift deletion in MYO6 was confirmed as the causative variant for this dominant nonsyndromic hearing loss DFNA22 family (PMID:25227905)
- MYO6 is crucial in maintaining cell cycle and cell growth of lung cancer cells.MYO6 is highly expressed in human lung cancer tissues. (PMID:25643992)
- MYO6 was highly expressed in hepatocellular carcinoma. (PMID:25703929)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | myo6b | ENSDARG00000042141 |
| danio_rerio | myo6a | ENSDARG00000044016 |
| mus_musculus | Myo6 | ENSMUSG00000033577 |
| rattus_norvegicus | Myo6 | ENSRNOG00000011852 |
| drosophila_melanogaster | jar | FBGN0011225 |
| caenorhabditis_elegans | spe-15 | WBGENE00004969 |
Paralogs (44): MYH13 (ENSG00000006788), MYO16 (ENSG00000041515), MYO9A (ENSG00000066933), MYO3B (ENSG00000071909), MYH7B (ENSG00000078814), MYO15A (ENSG00000091536), MYH7 (ENSG00000092054), MYO3A (ENSG00000095777), MYO9B (ENSG00000099331), MYH9 (ENSG00000100345), MYH14 (ENSG00000105357), MYH1 (ENSG00000109061), MYH3 (ENSG00000109063), MYH2 (ENSG00000125414), MYO1B (ENSG00000128641), MYO5C (ENSG00000128833), CGNL1 (ENSG00000128849), MYH8 (ENSG00000133020), MYH10 (ENSG00000133026), MYH11 (ENSG00000133392), MYO18B (ENSG00000133454), CCDC102A (ENSG00000135736), MYO1G (ENSG00000136286), MYO7A (ENSG00000137474), MYO1F (ENSG00000142347), CGN (ENSG00000143375), TMF1 (ENSG00000144747), MYH15 (ENSG00000144821), MYO10 (ENSG00000145555), CCDC102B (ENSG00000150636), MYO1E (ENSG00000157483), CCDC158 (ENSG00000163749), MYO1A (ENSG00000166866), MYO5B (ENSG00000167306), MYO7B (ENSG00000169994), MYO1H (ENSG00000174527), MYO1D (ENSG00000176658), MYO18A (ENSG00000196535), MYO5A (ENSG00000197535), MYH6 (ENSG00000197616)
Protein
Protein identifiers
Unconventional myosin-VI — Q9UM54 (reviewed: Q9UM54)
Alternative names: Unconventional myosin-6
All UniProt accessions (15): Q9UM54, A0A0A0MRM8, A0A0D9SGC1, A0A1Y0BRN3, A0A590UJ40, A0A590UJ48, A0A590UJ75, A0A590UJW9, A0A590UJY4, A0A590UK22, A0A590UK71, A0A590UK86, A0A590UKB0, A0A5F9ZI03, Q5JVM0
UniProt curated annotations — full annotation on UniProt →
Function. Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. Together with TOM1, mediates delivery of endocytic cargo to autophagosomes thereby promoting autophagosome maturation and driving fusion with lysosomes. Links TOM1 with autophagy receptors, such as TAX1BP1; CALCOCO2/NDP52 and OPTN. May act as a regulator of F-actin dynamics. As part of the DISP complex, may regulate the association of septins with actin and thereby regulate the actin cytoskeleton. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets. May play a role in the extension and network organization of neurites. Required for structural integrity of inner ear hair cells. Required for the correct localization of CLIC5 and RDX at the stereocilium base. Modulates RNA polymerase II-dependent transcription.
Subunit / interactions. Homodimer; dimerization seems to implicate the unfolding of the three-helix bundle region creating an additional calmodulin binding site, and cargo binding. Able to function as a monomer under specific conditions in vitro. Forms a complex with CFTR and DAB2 in the apical membrane of epithelial cells. Component of the DISP/DOCK7-induced septin displacement complex, at least composed of DOCK7, LRCH3 and MYO6. Binding to calmodulin through a unique insert, not found in other myosins, located in the neck region between the motor domain and the IQ domain appears to contribute to the directionality reversal. This interaction occurs only if the C-terminal lobe of calmodulin is occupied by calcium. Interaction with F-actin/ACTN1 occurs only at the apical brush border domain of the proximal tubule cells. Interacts with DAB2. In vitro, the C-terminal globular tail binds a C-terminal region of DAB2. Interacts with CFTR. Interacts with CABP5. Interacts with TOM1. Interacts with OPTN. Interacts with TAX1BP1 and CALCOCO2/NDP52. Interacts with TOM1L2. Interacts with CLIC5; may work together in a complex which also includes RDX and MYO6 to stabilize linkages between the plasma membrane and subjacent actin cytoskeleton at the base of stereocilia.
Subcellular location. Golgi apparatus. trans-Golgi network membrane. Nucleus. Cytoplasm. Perinuclear region. Membrane. Clathrin-coated pit. Cytoplasmic vesicle. Clathrin-coated vesicle. Cell projection. Filopodium. Ruffle membrane. Microvillus. Cytosol. Autophagosome. Endosome Cytoplasmic vesicle. Clathrin-coated vesicle membrane Cytoplasmic vesicle. Clathrin-coated vesicle membrane.
Tissue specificity. Expressed in most tissues examined including heart, brain, placenta, pancreas, spleen, thymus, prostate, testis, ovary, small intestine and colon. Highest levels in brain, pancreas, testis and small intestine. Also expressed in fetal brain and cochlea. Isoform 1 and isoform 2, containing the small insert, and isoform 4, containing neither insert, are expressed in unpolarized epithelial cells.
Post-translational modifications. Phosphorylation in the motor domain, induced by EGF, results in translocation of MYO6 from the cell surface to membrane ruffles and affects F-actin dynamics. Phosphorylated in vitro by p21-activated kinase (PAK).
Disease relevance. Deafness, autosomal dominant, 22 (DFNA22) [MIM:606346] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. DFNA22 is progressive and postlingual, with onset during childhood. By the age of approximately 50 years, affected individuals invariably have profound sensorineural deafness. The disease is caused by variants affecting the gene represented in this entry. Deafness, autosomal recessive, 37 (DFNB37) [MIM:607821] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry. Deafness, autosomal dominant 22, with hypertrophic cardiomyopathy (DFNHCM) [MIM:606346] An autosomal dominant sensorineural deafness associated with hypertrophic cardiomyopathy. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Divided into three regions: a N-terminal motor (head) domain, followed by a neck domain consisting of a calmodulin-binding linker domain and a single IQ motif, and a C-terminal tail region with a three-helix bundle region, a SAH domain and a unique globular domain required for interaction with other proteins such as cargo-binding. The SAH (single alpha-helix) region is characterized by a high content of charged residues which are predicted to stabilize the alpha-helical structure by ionic bonds. Its contribution to the mechanism conferring the myosin movement on actin filaments is debated.
Similarity. Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9UM54-3 | 3 | yes |
| Q9UM54-1 | 1 | |
| Q9UM54-2 | 2 | |
| Q9UM54-4 | 4 | |
| Q9UM54-5 | 5 | |
| Q9UM54-6 | 6 |
RefSeq proteins (7): NP_001287828, NP_001355065, NP_001355066, NP_001355067, NP_001355794, NP_001355795, NP_004990* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001609 | Myosin_head_motor_dom-like | Domain |
| IPR004009 | SH3_Myosin | Domain |
| IPR008989 | Myosin_S1_N | Homologous_superfamily |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR032412 | Myosin-VI_CBD | Domain |
| IPR036114 | MYSc_Myo6 | Domain |
| IPR036961 | Kinesin_motor_dom_sf | Homologous_superfamily |
| IPR049016 | MYO6_lever | Domain |
Pfam: PF00063, PF16521, PF21521
UniProt features (46 total): helix 14, region of interest 9, modified residue 5, splice variant 4, strand 4, domain 3, sequence variant 3, chain 1, binding site 1, mutagenesis site 1, turn 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6J56 | X-RAY DIFFRACTION | 1.8 |
| 8W41 | ELECTRON MICROSCOPY | 3.54 |
| 2N0Z | SOLUTION NMR | |
| 2N10 | SOLUTION NMR | |
| 2N11 | SOLUTION NMR | |
| 2N12 | SOLUTION NMR | |
| 2N13 | SOLUTION NMR | |
| 6E5N | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9UM54-F1 | 79.07 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 151–158
Post-translational modifications (5): 267, 405, 604, 1025, 1155
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 1116–1118 | decreased localization to autophagosomes. |
Function
Pathways and Gene Ontology
Reactome pathways
18 pathways
| ID | Pathway |
|---|---|
| R-HSA-190873 | Gap junction degradation |
| R-HSA-399719 | Trafficking of AMPA receptors |
| R-HSA-9013418 | RHOBTB2 GTPase cycle |
| R-HSA-9013420 | RHOU GTPase cycle |
| R-HSA-9013422 | RHOBTB1 GTPase cycle |
| R-HSA-112314 | Neurotransmitter receptors and postsynaptic signal transmission |
| R-HSA-112315 | Transmission across Chemical Synapses |
| R-HSA-112316 | Neuronal System |
| R-HSA-157858 | Gap junction trafficking and regulation |
| R-HSA-162582 | Signal Transduction |
| R-HSA-190828 | Gap junction trafficking |
| R-HSA-194315 | Signaling by Rho GTPases |
| R-HSA-199991 | Membrane Trafficking |
| R-HSA-399721 | Glutamate binding, activation of AMPA receptors and synaptic plasticity |
| R-HSA-5653656 | Vesicle-mediated transport |
| R-HSA-9012999 | RHO GTPase cycle |
| R-HSA-9706574 | RHOBTB GTPase Cycle |
| R-HSA-9716542 | Signaling by Rho GTPases, Miro GTPases and RHOBTB3 |
MSigDB gene sets: 349 (showing top):
GOBP_EPITHELIUM_DEVELOPMENT, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOCC_VACUOLAR_MEMBRANE, JAEGER_METASTASIS_DN, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, GOZGIT_ESR1_TARGETS_DN, GOBP_NEUROGENESIS, GOBP_VESICLE_MEDIATED_TRANSPORT, GOCC_RUFFLE, REACTOME_MEMBRANE_TRAFFICKING, GOBP_EPIDERMAL_CELL_DIFFERENTIATION, GOBP_ANIMAL_ORGAN_MORPHOGENESIS, GOBP_EAR_DEVELOPMENT, ONKEN_UVEAL_MELANOMA_UP, WOO_LIVER_CANCER_RECURRENCE_UP
GO Biological Process (12): intracellular protein transport (GO:0006886), endocytosis (GO:0006897), actin filament organization (GO:0007015), sensory perception of sound (GO:0007605), intracellular protein localization (GO:0008104), response to xenobiotic stimulus (GO:0009410), actin filament-based movement (GO:0030048), DNA damage response, signal transduction by p53 class mediator (GO:0030330), inner ear morphogenesis (GO:0042472), inner ear auditory receptor cell differentiation (GO:0042491), regulation of secretion (GO:0051046), protein transport (GO:0015031)
GO Molecular Function (11): microfilament motor activity (GO:0000146), cytoskeletal motor activity (GO:0003774), actin binding (GO:0003779), calmodulin binding (GO:0005516), ATP binding (GO:0005524), identical protein binding (GO:0042802), ADP binding (GO:0043531), actin filament binding (GO:0051015), minus-end directed microfilament motor activity (GO:0060001), nucleotide binding (GO:0000166), protein binding (GO:0005515)
GO Cellular Component (32): ruffle (GO:0001726), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), lysosomal membrane (GO:0005765), endosome (GO:0005768), autophagosome (GO:0005776), Golgi apparatus (GO:0005794), cytosol (GO:0005829), actin filament (GO:0005884), plasma membrane (GO:0005886), microvillus (GO:0005902), clathrin-coated pit (GO:0005905), cell cortex (GO:0005938), actin cytoskeleton (GO:0015629), membrane (GO:0016020), unconventional myosin complex (GO:0016461), endocytic vesicle (GO:0030139), filopodium (GO:0030175), clathrin-coated vesicle membrane (GO:0030665), cytoplasmic vesicle (GO:0031410), filamentous actin (GO:0031941), nuclear membrane (GO:0031965), ruffle membrane (GO:0032587), apical part of cell (GO:0045177), perinuclear region of cytoplasm (GO:0048471), extracellular exosome (GO:0070062), myosin complex (GO:0016459), clathrin-coated vesicle (GO:0030136), protein-containing complex (GO:0032991), cell projection (GO:0042995), clathrin-coated endocytic vesicle (GO:0045334)
Reactome top-level categories
Rollup of top-13 pathways:
| Category | Pathways |
|---|---|
| RHOBTB GTPase Cycle | 2 |
| RHO GTPase cycle | 2 |
| Gap junction trafficking | 1 |
| Glutamate binding, activation of AMPA receptors and synaptic plasticity | 1 |
| Transmission across Chemical Synapses | 1 |
| Neuronal System | 1 |
| Membrane Trafficking | 1 |
| Gap junction trafficking and regulation | 1 |
| Signaling by Rho GTPases, Miro GTPases and RHOBTB3 | 1 |
| Vesicle-mediated transport | 1 |
| Neurotransmitter receptors and postsynaptic signal transmission | 1 |
| Signaling by Rho GTPases | 1 |
| Signal Transduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| endomembrane system | 3 |
| cytoplasm | 3 |
| intracellular protein localization | 2 |
| protein binding | 2 |
| adenyl ribonucleotide binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| cytoplasmic vesicle | 2 |
| membrane | 2 |
| cell periphery | 2 |
| actin-based cell projection | 2 |
| protein transport | 1 |
| intracellular transport | 1 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| sensory perception of mechanical stimulus | 1 |
| macromolecule localization | 1 |
| response to chemical | 1 |
| actin filament-based process | 1 |
| signal transduction in response to DNA damage | 1 |
| signal transduction by p53 class mediator | 1 |
| ear morphogenesis | 1 |
| embryonic morphogenesis | 1 |
| inner ear development | 1 |
| hair cell differentiation | 1 |
| inner ear receptor cell differentiation | 1 |
| secretion | 1 |
| regulation of transport | 1 |
| transport | 1 |
| establishment of protein localization | 1 |
| cytoskeletal motor activity | 1 |
| polypeptide conformation or assembly isomerase activity | 1 |
| ATP-dependent activity | 1 |
| molecular_function | 1 |
| cytoskeletal protein binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
Protein interactions and networks
STRING
2097 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MYO6 | GIPC1 | O14908 | 967 |
| MYO6 | OTOF | Q9HC10 | 924 |
| MYO6 | OPTN | Q96CV9 | 804 |
| MYO6 | DAB2 | P98082 | 775 |
| MYO6 | TMPRSS3 | P57727 | 735 |
| MYO6 | DOCK7 | Q96N67 | 718 |
| MYO6 | TPRN | Q4KMQ1 | 715 |
| MYO6 | RGS19 | P49795 | 706 |
| MYO6 | LRP2 | P98164 | 700 |
| MYO6 | TMPRSS4 | Q9NRS4 | 670 |
| MYO6 | CDH23 | Q9H251 | 667 |
| MYO6 | KCNQ4 | P56696 | 645 |
| MYO6 | SLC26A5 | P58743 | 644 |
| MYO6 | TMC1 | Q8TDI8 | 638 |
| MYO6 | CACNA1D | Q01668 | 632 |
IntAct
230 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SMN1 | GEMIN2 | psi-mi:“MI:0914”(association) | 0.960 |
| TOLLIP | TOM1 | psi-mi:“MI:0914”(association) | 0.890 |
| ENTREP1 | WWP2 | psi-mi:“MI:0914”(association) | 0.850 |
| LRCH3 | DOCK7 | psi-mi:“MI:0914”(association) | 0.840 |
| DOCK7 | LRCH3 | psi-mi:“MI:0914”(association) | 0.840 |
| ARRDC3 | WWP2 | psi-mi:“MI:0914”(association) | 0.770 |
| SH3BP4 | GIPC1 | psi-mi:“MI:0914”(association) | 0.740 |
| MYO6 | LRCH3 | psi-mi:“MI:0915”(physical association) | 0.730 |
| ARHGEF12 | GIPC1 | psi-mi:“MI:0914”(association) | 0.720 |
| ARHGEF12 | GIPC1 | psi-mi:“MI:2364”(proximity) | 0.720 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| MYO6 | ARHGEF12 | psi-mi:“MI:0403”(colocalization) | 0.700 |
| MYO6 | GIPC1 | psi-mi:“MI:0915”(physical association) | 0.690 |
| MYO6 | GIPC1 | psi-mi:“MI:0914”(association) | 0.690 |
| MYO6 | TOM1L2 | psi-mi:“MI:0915”(physical association) | 0.610 |
| CANX | PGRMC1 | psi-mi:“MI:0914”(association) | 0.570 |
| FBXO30 | MYO6 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYO6 | ENTREP1 | psi-mi:“MI:0915”(physical association) | 0.550 |
BioGRID (645): MYO6 (Affinity Capture-MS), MYO6 (Affinity Capture-RNA), MYO6 (Affinity Capture-RNA), MYO6 (Affinity Capture-RNA), MYO6 (Affinity Capture-MS), MYO6 (Affinity Capture-MS), MYO6 (Reconstituted Complex), MYO6 (Affinity Capture-MS), DPP9 (Co-fractionation), MYO6 (Co-fractionation), MYO6 (Co-fractionation), MYO6 (Co-fractionation), MYO6 (Co-fractionation), MYO6 (Co-fractionation), NHLRC2 (Co-fractionation)
ESM2 similar proteins: A1C4A5, A1DBH2, A2R5J1, A3LYL7, A4RE77, A5DKH0, A5E4A8, A6SED8, A6ZMG6, A7EK16, A8N2Y6, A8PWF6, B0CRJ3, B0Y9Q4, E1BPK6, E9Q634, G3UW82, O00160, P0CP00, P0CP01, P12882, P13538, P49824, Q00647, Q04439, Q076A6, Q076A7, Q0CEX5, Q12965, Q1DLP2, Q28641, Q2HDI2, Q2US45, Q4WC55, Q59MQ0, Q63356, Q64331, Q6BUQ2, Q6C7C0, Q6CVE9
Diamond homologs: A8PWF6, B2RTY4, D3ZJP6, E1BPK6, E7EZG2, E7F3F0, E7F9L8, E9Q634, F1PT61, F4HWY6, F4HXP9, F4I460, F4I507, F4I5Q6, F4IRU3, F4IUG9, F4IVR7, F4JIU4, F4JM19, F4K0A6, F4K5J1, F8VQB6, K7U9N8, O00160, O08638, O74805, O94477, P08799, P10569, P10587, P11055, P12844, P12847, P13541, P14105, P19706, P21271, P22467, P24733, P32492
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PAK3 | “up-regulates activity” | MYO6 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 204 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Downstream signal transduction | 5 | 14.3× | 3e-03 |
| Constitutive Signaling by Aberrant PI3K in Cancer | 9 | 8.6× | 9e-04 |
| PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling | 9 | 6.5× | 2e-03 |
| PIP3 activates AKT signaling | 11 | 5.5× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cellular response to type II interferon | 9 | 10.5× | 3e-04 |
| protein autophosphorylation | 8 | 6.5× | 9e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
970 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 55 |
| Likely pathogenic | 45 |
| Uncertain significance | 482 |
| Likely benign | 168 |
| Benign | 100 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1073626 | NM_004999.4(MYO6):c.2571_2574del (p.Ser858fs) | Pathogenic |
| 1297599 | NM_004999.4(MYO6):c.2761G>T (p.Glu921Ter) | Pathogenic |
| 1452617 | NM_004999.4(MYO6):c.2974C>T (p.Gln992Ter) | Pathogenic |
| 1458447 | NM_004999.4(MYO6):c.3256_3257dup (p.Asp1087fs) | Pathogenic |
| 1676028 | NM_004999.4(MYO6):c.1859T>A (p.Leu620Ter) | Pathogenic |
| 1679197 | NM_004999.4(MYO6):c.560del (p.Pro187fs) | Pathogenic |
| 1684065 | NM_004999.4(MYO6):c.2867+1G>A | Pathogenic |
| 1693367 | NM_004999.4(MYO6):c.2287-2A>G | Pathogenic |
| 178957 | NM_004999.4(MYO6):c.238C>T (p.Arg80Ter) | Pathogenic |
| 2021491 | NM_004999.4(MYO6):c.3376del (p.Thr1126fs) | Pathogenic |
| 2029461 | NM_004999.4(MYO6):c.2117dup (p.Ser707fs) | Pathogenic |
| 2034241 | NM_004999.4(MYO6):c.2240dup (p.Asn747fs) | Pathogenic |
| 2055978 | NM_004999.4(MYO6):c.1125del (p.Cys375fs) | Pathogenic |
| 2070231 | NM_004999.4(MYO6):c.854_855del (p.Lys285fs) | Pathogenic |
| 228375 | NM_004999.4(MYO6):c.2814_2815del (p.Arg939fs) | Pathogenic |
| 228376 | NM_004999.4(MYO6):c.458C>G (p.Ser153Ter) | Pathogenic |
| 236034 | NM_004999.4(MYO6):c.1473_1473+2delinsC | Pathogenic |
| 2637184 | NM_004999.4(MYO6):c.613C>T (p.Arg205Ter) | Pathogenic |
| 2657164 | GRCh37/hg19 6q14.1(chr6:76545618-76545673)x1 | Pathogenic |
| 2698497 | NM_004999.4(MYO6):c.2692del (p.Glu898fs) | Pathogenic |
| 2707703 | NM_004999.4(MYO6):c.256del (p.Ile86fs) | Pathogenic |
| 2734912 | NM_004999.4(MYO6):c.554-1G>A | Pathogenic |
| 2734913 | NM_004999.4(MYO6):c.2473C>T (p.Arg825Ter) | Pathogenic |
| 2734914 | NM_004999.4(MYO6):c.2544dup (p.Arg849fs) | Pathogenic |
| 2825213 | NM_004999.4(MYO6):c.3040dup (p.Leu1014fs) | Pathogenic |
| 2831928 | NM_004999.4(MYO6):c.1452_1453insTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGTCTTCAACAATTTTTT (p.Asn485delinsPhePhePhePhePhePheXaaXaaXaaXaaGluGlyGluGlyGluGlyGluGlyGluGlyGluGlyGluGlyGluGlyGluGlyGluSerSerThrIlePheTer) | Pathogenic |
| 2864948 | NM_004999.4(MYO6):c.2800G>T (p.Glu934Ter) | Pathogenic |
| 3246186 | NC_000006.11:g.(?76568599)(76568730_?)del | Pathogenic |
| 3246189 | NC_000006.11:g.(?76527265)(76545693_?)del | Pathogenic |
| 3257374 | NM_004999.4(MYO6):c.856G>T (p.Glu286Ter) | Pathogenic |
SpliceAI
6076 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:75817493:T:A | acceptor_gain | 1.0000 |
| 6:75817496:A:AG | acceptor_gain | 1.0000 |
| 6:75817496:AACAG:A | acceptor_gain | 1.0000 |
| 6:75817497:ACAGG:A | acceptor_gain | 1.0000 |
| 6:75817498:C:G | acceptor_gain | 1.0000 |
| 6:75817498:CAG:C | acceptor_loss | 1.0000 |
| 6:75817498:CAGGT:C | acceptor_gain | 1.0000 |
| 6:75817499:A:AG | acceptor_gain | 1.0000 |
| 6:75817499:A:T | acceptor_loss | 1.0000 |
| 6:75817499:AG:A | acceptor_gain | 1.0000 |
| 6:75817499:AGGT:A | acceptor_gain | 1.0000 |
| 6:75817499:AGGTG:A | acceptor_gain | 1.0000 |
| 6:75817500:G:A | acceptor_loss | 1.0000 |
| 6:75817500:G:GT | acceptor_gain | 1.0000 |
| 6:75817500:GG:G | acceptor_gain | 1.0000 |
| 6:75817500:GGT:G | acceptor_gain | 1.0000 |
| 6:75817500:GGTG:G | acceptor_gain | 1.0000 |
| 6:75817500:GGTGA:G | acceptor_gain | 1.0000 |
| 6:75817660:GCAAG:G | donor_gain | 1.0000 |
| 6:75817661:C:T | donor_gain | 1.0000 |
| 6:75817662:AAGG:A | donor_loss | 1.0000 |
| 6:75817663:AGG:A | donor_loss | 1.0000 |
| 6:75817665:G:GG | donor_gain | 1.0000 |
| 6:75817665:GT:G | donor_loss | 1.0000 |
| 6:75817666:T:G | donor_loss | 1.0000 |
| 6:75822780:A:AG | acceptor_gain | 1.0000 |
| 6:75822781:G:GG | acceptor_gain | 1.0000 |
| 6:75828610:TTATG:T | donor_loss | 1.0000 |
| 6:75828611:TATGT:T | donor_loss | 1.0000 |
| 6:75828612:ATGT:A | donor_loss | 1.0000 |
AlphaMissense
8573 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000004167 (6:75889875 T>A), RS1000009266 (6:75857601 A>T), RS1000074992 (6:75901009 G>A,C), RS1000089288 (6:75808721 G>A), RS1000093261 (6:75769644 G>A), RS1000119383 (6:75850736 T>G), RS1000129280 (6:75895748 C>G), RS1000137093 (6:75793144 C>T), RS1000138841 (6:75811254 A>G), RS1000188951 (6:75757503 G>C,T), RS1000254979 (6:75883022 T>C), RS1000265301 (6:75806475 A>G), RS1000265391 (6:75906473 C>A,G,T), RS1000272584 (6:75764035 C>A), RS1000273120 (6:75776542 GCCA>G)
Disease associations
OMIM: gene MIM:600970 | disease phenotypes: MIM:606346, MIM:607821, MIM:128600, MIM:156000, MIM:124900, MIM:193500, MIM:190300, MIM:226730
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal dominant nonsyndromic hearing loss 22 | Definitive | Autosomal dominant |
| nonsyndromic genetic hearing loss | Definitive | Autosomal dominant |
| autosomal recessive nonsyndromic hearing loss 37 | Strong | Autosomal recessive |
| progressive sensorineural hearing loss-hypertrophic cardiomyopathy syndrome | Supportive | Autosomal dominant |
| autosomal dominant nonsyndromic hearing loss | Supportive | Autosomal dominant |
| hearing loss, autosomal recessive | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| nonsyndromic genetic hearing loss | Definitive | AD |
Mondo (15): hearing loss disorder (MONDO:0005365), autosomal dominant nonsyndromic hearing loss 22 (MONDO:0011660), autosomal recessive nonsyndromic hearing loss 37 (MONDO:0011912), ear malformation (MONDO:0007500), nonsyndromic genetic hearing loss (MONDO:0019497), Meniere disease (MONDO:0007972), autosomal dominant nonsyndromic hearing loss (MONDO:0019587), Waardenburg syndrome (MONDO:0018094), obesity disorder (MONDO:0011122), infertility disorder (MONDO:0005047), male infertility (MONDO:0005372), essential tremor (MONDO:0003233), junctional epidermolysis bullosa with pyloric atresia (MONDO:0009183), progressive sensorineural hearing loss-hypertrophic cardiomyopathy syndrome (MONDO:0016424), hearing loss, autosomal recessive (MONDO:0019588)
Orphanet (11): Progressive sensorineural hearing loss-hypertrophic cardiomyopathy syndrome (Orphanet:228012), Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636), Rare non-syndromic genetic deafness (Orphanet:87884), Rare genetic deafness (Orphanet:96210), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), Waardenburg syndrome (Orphanet:3440), Obesity due to melanocortin 4 receptor deficiency (Orphanet:71529), Junctional epidermolysis bullosa with pyloric atresia (Orphanet:79403), NON RARE IN EUROPE: Menière disease (Orphanet:45360), NON RARE IN EUROPE: Non rare obesity (Orphanet:521399), NON RARE IN EUROPE: Hereditary essential tremor (Orphanet:862)
HPO phenotypes
8 total (9 of 8 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000408 | Progressive sensorineural hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0001751 | Abnormal vestibular function |
| HP:0003577 | Congenital onset |
| HP:0007642 | Early-onset non-progressive night blindness |
| HP:0001513 | Obesity |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002606_2 | Prostate cancer | 4.000000e-08 |
| GCST006192_41 | Systolic blood pressure x smoking status (ever vs never) interaction (2df test) | 5.000000e-08 |
| GCST012226_480 | Waist circumference adjusted for body mass index | 9.000000e-09 |
| GCST90020028_502 | Hip circumference adjusted for BMI | 5.000000e-09 |
| GCST90020028_503 | Hip circumference adjusted for BMI | 1.000000e-09 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006335 | systolic blood pressure |
| EFO:0006527 | smoking status measurement |
| EFO:0007789 | BMI-adjusted waist circumference |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (11)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D020329 | Essential Tremor | C10.228.662.350 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D007246 | Infertility | C12.100.750 |
| D007248 | Infertility, Male | C12.100.500.430; C12.100.750.700; C12.200.294.430 |
| D008575 | Meniere Disease | C09.218.568.217.500 |
| D014849 | Waardenburg Syndrome | C16.131.077.938 |
| C564609 | Deafness, Autosomal Recessive (supp.) | |
| C564331 | Deafness, Autosomal Recessive 37 (supp.) | |
| C538197 | Deafness, autosomal dominant nonsyndromic sensorineural 22 (supp.) | |
| C535377 | Epidermolysis bullosa with pyloric atresia (supp.) | |
| C580334 | Nonsyndromic Deafness (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
58 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | increases expression, affects expression | 4 |
| Benzo(a)pyrene | increases methylation, increases expression | 3 |
| mono-(2-ethylhexyl)phthalate | decreases expression | 2 |
| bicalutamide | increases expression | 2 |
| bisphenol F | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | increases expression | 1 |
| geraniol | increases expression | 1 |
| sodium arsenate | decreases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| manganese chloride | increases abundance, increases expression | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | decreases expression, affects cotreatment | 1 |
| epigallocatechin gallate | decreases expression, affects cotreatment | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | decreases ADP-ribosylation | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| torcetrapib | increases expression | 1 |
| bisphenol B | increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | affects cotreatment, increases expression | 1 |
| LDN 193189 | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Temozolomide | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Vehicle Emissions | increases abundance, increases expression | 1 |
| Caffeine | affects phosphorylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
Clinical trials (associated diseases)
301 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT04041440 | PHASE1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | PHASE1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT01802190 | Not specified | TERMINATED | Prevalence of POU4F3 and SLC17A8 Mutations |
| NCT00486577 | PHASE2/PHASE3 | COMPLETED | Chronic Electrical Stimulation of the Auditory Cortex for Intractable Tinnitus |
| NCT00789061 | PHASE2/PHASE3 | UNKNOWN | Applying Proton Pump Inhibitor to Prevent and Treat Acute Fluctuating Hearing Loss in Patients With SLC26A4 Mutation |
| NCT01423409 | PHASE2/PHASE3 | COMPLETED | Multicenter Trial Assessing an Innovative VAS of Pain Among Deaf People |
| NCT05786378 | PHASE2/PHASE3 | UNKNOWN | Assessment of The Efficacy of Intratympanic Platelet Rich Plasma for Treatment of Sensorineural Hearing Loss. |
| NCT01108601 | PHASE1/PHASE2 | UNKNOWN | Transtympanic Ringer’s Lactate for the Prevention of Cisplatin Ototoxicity |
| NCT01621256 | PHASE1/PHASE2 | COMPLETED | Efficacy, Safety, and Tolerability of Ancrod in Patients With Sudden Hearing Loss |
| NCT06370351 | PHASE1/PHASE2 | RECRUITING | A Phase I/II Clinical Trial with SENS-501 in Children Suffering from Severe to Profound Hearing Loss Due to Otoferlin (OTOF) Mutations |
| NCT06545175 | PHASE1/PHASE2 | RECRUITING | Intracochlear Application of VSF1.01 for the Reduction of Cochlear Implant Surgery Related Trauma |
| NCT07304024 | PHASE1/PHASE2 | RECRUITING | A Treatment for a Form of Age-Related Central Auditory Processing Disorder Consisting of Clemastine Fumarate Plus Engineered Sound |
Related Atlas pages
- Associated diseases: autosomal dominant nonsyndromic hearing loss 22, autosomal recessive nonsyndromic hearing loss 37, nonsyndromic genetic hearing loss, progressive sensorineural hearing loss-hypertrophic cardiomyopathy syndrome, autosomal dominant nonsyndromic hearing loss, hearing loss, autosomal recessive
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): autosomal dominant nonsyndromic hearing loss, autosomal dominant nonsyndromic hearing loss 22, autosomal recessive nonsyndromic hearing loss 37, ear malformation, essential tremor, hearing loss, autosomal recessive, infertility disorder, junctional epidermolysis bullosa with pyloric atresia, Meniere disease, nonsyndromic genetic hearing loss, progressive sensorineural hearing loss-hypertrophic cardiomyopathy syndrome, Waardenburg syndrome