MYO7A
geneOn this page
Also known as NSRD2
Summary
MYO7A (myosin VIIA, HGNC:7606) is a protein-coding gene on chromosome 11q13.5, encoding Unconventional myosin-VIIa (Q13402). Myosins are actin-based motor molecules with ATPase activity.
This gene is a member of the myosin gene family. Myosins are mechanochemical proteins characterized by the presence of a motor domain, an actin-binding domain, a neck domain that interacts with other proteins, and a tail domain that serves as an anchor. This gene encodes an unconventional myosin with a very short tail. Defects in this gene are associated with the mouse shaker-1 phenotype and the human Usher syndrome 1B which are characterized by deafness, reduced vestibular function, and (in human) retinal degeneration. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 4647 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Usher syndrome type 1 (Definitive, ClinGen) — +7 more curated relationships
- GWAS associations: 3
- Clinical variants (ClinVar): 5,055 total — 414 pathogenic, 362 likely-pathogenic
- Phenotypes (HPO): 33
- MANE Select transcript:
NM_000260
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7606 |
| Approved symbol | MYO7A |
| Name | myosin VIIA |
| Location | 11q13.5 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | NSRD2 |
| Ensembl gene | ENSG00000137474 |
| Ensembl biotype | protein_coding |
| OMIM | 276903 |
| Entrez | 4647 |
Gene structure
Transcript identifiers
Ensembl transcripts: 15 — 9 protein_coding, 3 retained_intron, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000409619, ENST00000409709, ENST00000409893, ENST00000458169, ENST00000458637, ENST00000467137, ENST00000481328, ENST00000481532, ENST00000526863, ENST00000605744, ENST00000660626, ENST00000669443, ENST00000670577, ENST00000962571, ENST00000962572
RefSeq mRNA: 3 — MANE Select: NM_000260
NM_000260, NM_001127180, NM_001369365
CCDS: CCDS53683, CCDS53684, CCDS91543
Canonical transcript exons
ENST00000409709 — 49 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000989597 | 77199535 | 77199818 |
| ENSE00001040263 | 77201448 | 77201638 |
| ENSE00001578796 | 77128246 | 77128489 |
| ENSE00002451072 | 77157279 | 77157392 |
| ENSE00002453492 | 77172748 | 77172885 |
| ENSE00002461626 | 77160973 | 77161115 |
| ENSE00002465505 | 77155907 | 77156091 |
| ENSE00002467426 | 77158277 | 77158430 |
| ENSE00002467986 | 77174756 | 77174914 |
| ENSE00002472046 | 77166056 | 77166162 |
| ENSE00002475117 | 77160163 | 77160282 |
| ENSE00002475451 | 77156862 | 77157004 |
| ENSE00002496963 | 77156660 | 77156781 |
| ENSE00002513317 | 77159447 | 77159523 |
| ENSE00002526951 | 77162853 | 77162988 |
| ENSE00002530052 | 77162120 | 77162330 |
| ENSE00002531118 | 77147798 | 77147950 |
| ENSE00003476309 | 77202300 | 77202424 |
| ENSE00003483359 | 77211152 | 77211337 |
| ENSE00003483546 | 77190020 | 77190139 |
| ENSE00003487793 | 77184588 | 77184715 |
| ENSE00003505770 | 77212952 | 77213035 |
| ENSE00003507277 | 77181951 | 77182154 |
| ENSE00003514114 | 77183068 | 77183157 |
| ENSE00003530270 | 77207289 | 77207402 |
| ENSE00003535185 | 77213860 | 77213979 |
| ENSE00003537769 | 77181380 | 77181589 |
| ENSE00003549180 | 77179045 | 77179129 |
| ENSE00003549304 | 77175372 | 77175464 |
| ENSE00003560520 | 77180374 | 77180481 |
| ENSE00003562234 | 77142709 | 77142822 |
| ENSE00003590185 | 77130589 | 77130652 |
| ENSE00003593861 | 77197481 | 77197598 |
| ENSE00003597654 | 77190697 | 77190870 |
| ENSE00003600559 | 77192051 | 77192278 |
| ENSE00003600784 | 77182424 | 77182600 |
| ENSE00003601501 | 77189344 | 77189470 |
| ENSE00003620209 | 77203060 | 77203217 |
| ENSE00003630464 | 77194354 | 77194524 |
| ENSE00003634057 | 77206097 | 77206202 |
| ENSE00003656564 | 77179735 | 77179953 |
| ENSE00003660293 | 77177549 | 77177643 |
| ENSE00003661756 | 77208430 | 77208517 |
| ENSE00003665330 | 77211821 | 77211937 |
| ENSE00003665828 | 77198495 | 77198621 |
| ENSE00003668983 | 77204076 | 77204229 |
| ENSE00003672491 | 77208697 | 77208803 |
| ENSE00003694367 | 77205462 | 77205617 |
| ENSE00003822371 | 77214607 | 77215241 |
Expression profiles
Bgee: expression breadth ubiquitous, 186 present calls, max score 94.56.
FANTOM5 (CAGE): breadth broad, TPM avg 2.3651 / max 155.7519, expressed in 577 samples.
FANTOM5 promoters (10 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 115973 | 0.5007 | 159 |
| 115979 | 0.4686 | 198 |
| 115977 | 0.3430 | 160 |
| 115980 | 0.2955 | 138 |
| 115975 | 0.2429 | 24 |
| 115972 | 0.1822 | 77 |
| 115978 | 0.1258 | 68 |
| 115982 | 0.0985 | 42 |
| 115981 | 0.0766 | 39 |
| 115974 | 0.0314 | 13 |
Top tissues by expression
275 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right adrenal gland cortex | UBERON:0035827 | 94.56 | gold quality |
| right adrenal gland | UBERON:0001233 | 94.17 | gold quality |
| left adrenal gland | UBERON:0001234 | 93.90 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 93.86 | gold quality |
| adrenal cortex | UBERON:0001235 | 93.10 | gold quality |
| adrenal gland | UBERON:0002369 | 91.71 | gold quality |
| left testis | UBERON:0004533 | 90.11 | gold quality |
| right lobe of liver | UBERON:0001114 | 90.07 | gold quality |
| right testis | UBERON:0004534 | 89.90 | gold quality |
| endometrium epithelium | UBERON:0004811 | 89.47 | silver quality |
| adenohypophysis | UBERON:0002196 | 88.57 | gold quality |
| pituitary gland | UBERON:0000007 | 88.21 | gold quality |
| buccal mucosa cell | CL:0002336 | 87.05 | silver quality |
| testis | UBERON:0000473 | 86.86 | gold quality |
| spleen | UBERON:0002106 | 86.45 | gold quality |
| paraflocculus | UBERON:0005351 | 85.66 | silver quality |
| frontal pole | UBERON:0002795 | 85.55 | silver quality |
| pigmented layer of retina | UBERON:0001782 | 85.10 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 83.17 | silver quality |
| liver | UBERON:0002107 | 83.16 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 82.22 | gold quality |
| apex of heart | UBERON:0002098 | 81.10 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 80.29 | gold quality |
| placenta | UBERON:0001987 | 80.12 | gold quality |
| sural nerve | UBERON:0015488 | 79.13 | gold quality |
| omental fat pad | UBERON:0010414 | 78.27 | gold quality |
| peritoneum | UBERON:0002358 | 78.25 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 77.24 | gold quality |
| cerebellar vermis | UBERON:0004720 | 77.23 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 76.40 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.85 |
| E-MTAB-6058 | no | 111.43 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
36 targeting MYO7A, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6753-3P | 99.93 | 66.57 | 637 |
| HSA-MIR-7107-3P | 99.93 | 66.73 | 627 |
| HSA-MIR-4493 | 99.90 | 66.48 | 977 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-4306 | 99.72 | 70.50 | 3630 |
| HSA-MIR-494-3P | 99.70 | 71.45 | 2795 |
| HSA-MIR-4527 | 99.66 | 67.43 | 714 |
| HSA-MIR-6503-5P | 99.62 | 66.96 | 597 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-3120-3P | 99.54 | 70.28 | 2669 |
| HSA-MIR-4672 | 99.50 | 71.58 | 2893 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-185-5P | 99.35 | 68.60 | 2497 |
| HSA-MIR-4644 | 99.35 | 69.12 | 2514 |
| HSA-MIR-145-3P | 99.33 | 67.66 | 764 |
| HSA-MIR-7854-3P | 99.08 | 66.26 | 1117 |
| HSA-MIR-4651 | 99.06 | 67.57 | 2002 |
| HSA-MIR-608 | 98.93 | 67.83 | 2013 |
| HSA-MIR-491-3P | 98.88 | 68.86 | 1224 |
| HSA-MIR-2355-5P | 98.83 | 65.51 | 1589 |
| HSA-MIR-216B-3P | 98.55 | 67.19 | 1223 |
| HSA-MIR-6852-3P | 98.54 | 67.60 | 1468 |
| HSA-MIR-5008-5P | 98.42 | 65.87 | 1019 |
| HSA-MIR-6881-3P | 98.04 | 68.24 | 1777 |
| HSA-MIR-676-3P | 97.86 | 65.70 | 668 |
| HSA-MIR-3909 | 97.55 | 66.78 | 887 |
| HSA-MIR-6515-5P | 97.08 | 65.48 | 1219 |
| HSA-MIR-410-5P | 96.55 | 66.28 | 459 |
| HSA-MIR-4633-5P | 96.17 | 66.36 | 501 |
Literature-anchored findings (GeneRIF, showing 40)
- the shaping of the hair bundle relies on a functional unit composed of myosin VIIa, harmonin b and cadherin 23 that is essential to ensure the cohesion of the stereocilia (PMID:12485990)
- Expressed in retina. Domain structure. Carrier proteins determine cellular function. (PMID:15180257)
- A new heterozygous missense mutation (c.2557C>T; p.R853C) was found in autosomal dominant non-syndromic hearing loss that changes an invariant residue of the fifth IQ motif, a putative calmodulin (CaM) binding domain. (PMID:15300860)
- Mutations in MYO7A is associated with Usher syndrome (PMID:15823922)
- MYO7A is the gene associated with the Usher syndromes. (PMID:15965244)
- Myosin-VIIa is associated with cathepsin D- and Rab7-positive lysosomes. Association of myosin-VIIa with lysosomes was Rab7 independent. These studies suggest that myosin-VIIa is a lysosome motor. (PMID:16001398)
- A genome-wide scan found linkage to locus DFNA11. Sequencing of the MYO7A gene in the linked region identified a new missense mutation resulting in an Ala230Val change in the motor domain of the myosin VIIA, causing a dominant form of deafness. (PMID:16449806)
- there is an absence of hot spot mutations in the MYO7A gene and this gene plays a major role in Usher syndrome (PMID:16470552)
- Three new pathological mutations causing either premature termination of translation or replacement of an evolutionary conserved MYO7A amino acid. (PMID:17093394)
- 19 different mutations were identified, 13 of which were novel. These variants include two nonsense mutations, one putative splice site mutation, one insertion and five deletions in coding sequence and 10 missense mutations. (PMID:17361009)
- Significant linkage in DFNA11 markers was found in hereditary deafness. (PMID:17702415)
- Missense change p.Y1719C. Homozygous c.1687G>A mutation in last nucleotide of exon 14, predicted to result in aberrant splicing and may lead to loss of MYO7A transcript. P.Y1719C is not disease-causing. Frequent polymorphism in the Moroccan population. (PMID:17960123)
- p.E1716del causes a less severe phenotype (DFNB2) than the USH1B-associated alleles because the resulting protein retains some degree of normal function. (PMID:18181211)
- Molecular genetic analysis was performed in 11 patients and pathogenic mutations were identified in all cases: (mutation in myosin 7A gene in 5 cases). Two new mutations in the MYO7A gene never reported before were found. (PMID:18323324)
- Humans with PCDH15 (USH1F), USH2A or GPR98 (USH2C) had a similar retinal phenotype to MYO7A (PMID:18463160)
- the mutations responsible for USH1B cause the complete loss of the actin-activated ATPase activity or the reduction of duty ratio of myosin VIIa. (PMID:18700726)
- Patients with MYO7A-USH1B can have regions of structurally and functionally normal retina with definable transitions to severe laminopathy and visual loss. (PMID:19074810)
- There is an association with the variant S1666C (rs2276288) in the MYO7A gene and the risk of developing malignant melanoma. (PMID:19320733)
- The data indicate that melanosomes in the retinal pigment epithelium and choroid are the dominant source of NIR-autofluorescence from the posterior region of the eye with ushers syndrome due to MYO7A mutation. (PMID:19324852)
- Molecular screening of deafness in Algeria: high genetic heterogeneity involving DFNB1, DFNB2, DFNB12, and DFNB23. (PMID:19375528)
- Variable hearing impairment in a DFNB2 family with a novel MYO7A missense mutation (PMID:20132242)
- Five mutations (three in MYO7A and two in CDH23) were identified in four of five unrelated patients with Usher syndrome type 1. (PMID:20844544)
- The molecular determinant of a mild form of retinopathy in association with a subtle splicing modulation of MYO7A mRNA, was investigated. (PMID:21031134)
- Novel missense mutations in MYO7A underlying postlingual high- or low-frequency non-syndromic hearing impairment in two large families. (PMID:21150918)
- a single nucleotide polymorphism (SNP) T/C at position -4128 in the wild-type MYO7A promoter allele that sorts with the degree of hearing loss severity in the pedigree (PMID:21378158)
- association of myosin VIIA monomers with membrane via the MyRip/Rab27a complex facilitates the cargo-transporting activity of myosin VIIA, which is achieved by cluster formation on the membrane (PMID:21482763)
- The results suggested that in a cellular environment, compartment-specific fluctuations in free Mg2+ ions can mediate the conditional switching of myosin-7a between cargo moving and tension bearing modes. (PMID:21687988)
- The authors speculate that null MYO7A alleles could be associated with milder dysfunction and fewer photoreceptor structural losses at ages when other genotypes show more severe phenotypes. (PMID:21873662)
- in a set of consanguineous patient families with Leber congenital amaurosis study identified five putative disease-causing mutations, including four novel alleles, in six families; These five mutations are located in four genes, ALMS1, IQCB1, CNGA3, and MYO7A (PMID:21901789)
- Pathogenic mutations in MYO7A, USH1C, and USH1G have been found in four consanguineous Israeli Arab families with Usher syndrome type 1. (PMID:22219650)
- Possible digenism could not be excluded in two families segregating genomic variations in both MYO7A and USH2A, and two families with CLRN1 and USH2A. (PMID:22681893)
- A previously reported mutation (c.52C>T; p.Q18X) in the myosin VIIA (MYO7A) gene was found in the homozygous state in the affected siblings. (PMID:22690115)
- Our results show that MYO7A therapy with AAV2 or AAV5 single vectors is efficacious; however, the dual AAV2 approach proved to be less effective. (PMID:23344065)
- A new missense mutation (Arg668His) in the motor head domain of myosin VIIA in a family with autosomal dominant hearing impairment (DFNA11). (PMID:23383098)
- Two novel mutations, c.3742G>A (p.E1248K) and c.6051+1G>A (donor splice site mutation in intron 44), of MYO7A in a Chinese non-consanguineous family with Usher syndrome type 1, were identified. (PMID:23559863)
- Hearing loss was found to co-segregate with locus-specific STR markers for MYO7A in 32 Pakistani families. (PMID:23770805)
- Data show that AAV-mediated hMYO7A gene transfer to the mice sh1(-/-) retina is effective. (PMID:23991031)
- Data indicate that that CIB2 localizes to stereocilia and interacts with the USH proteins myosin VIIa and whirlin, suggesting CIB2 is a Ca2+-buffering protein essential for calcium homeostasis in the mechanosensory stereocilia of inner ear hair cells. (PMID:24022220)
- The MYO7A gene is responsible for two distinct diseases and gives evidence that the p.P1887L mutation in a homozygous state may be responsible for nonsyndromic hearing loss. (PMID:24194196)
- MYO7A-related ocular disease is variable. Central vision typically remains preserved at least until the third decade of life, with 50% of affected individuals reaching legal blindness by 40 years of age. (PMID:24199935)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | myo7aa | ENSDARG00000099871 |
| mus_musculus | Myo7a | ENSMUSG00000030761 |
| rattus_norvegicus | Myo7a | ENSRNOG00000013641 |
| drosophila_melanogaster | ck | FBGN0000317 |
Paralogs (44): MYH13 (ENSG00000006788), MYO16 (ENSG00000041515), MYO9A (ENSG00000066933), MYO3B (ENSG00000071909), MYH7B (ENSG00000078814), MYO15A (ENSG00000091536), MYH7 (ENSG00000092054), MYO3A (ENSG00000095777), MYO9B (ENSG00000099331), MYH9 (ENSG00000100345), MYH14 (ENSG00000105357), MYH1 (ENSG00000109061), MYH3 (ENSG00000109063), MYH2 (ENSG00000125414), MYO1B (ENSG00000128641), MYO5C (ENSG00000128833), CGNL1 (ENSG00000128849), MYH8 (ENSG00000133020), MYH10 (ENSG00000133026), MYH11 (ENSG00000133392), MYO18B (ENSG00000133454), CCDC102A (ENSG00000135736), MYO1G (ENSG00000136286), MYO1F (ENSG00000142347), CGN (ENSG00000143375), TMF1 (ENSG00000144747), MYH15 (ENSG00000144821), MYO10 (ENSG00000145555), CCDC102B (ENSG00000150636), MYO1E (ENSG00000157483), CCDC158 (ENSG00000163749), MYO1A (ENSG00000166866), MYO5B (ENSG00000167306), MYO7B (ENSG00000169994), MYO1H (ENSG00000174527), MYO1D (ENSG00000176658), MYO18A (ENSG00000196535), MYO6 (ENSG00000196586), MYO5A (ENSG00000197535), MYH6 (ENSG00000197616)
Protein
Protein identifiers
Unconventional myosin-VIIa — Q13402 (reviewed: Q13402)
All UniProt accessions (6): A0A590UJ94, A0A590UJG0, A0A590UJR8, B9A012, Q13402, H7C4D8
UniProt curated annotations — full annotation on UniProt →
Function. Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. In the retina, plays an important role in the renewal of the outer photoreceptor disks. Plays an important role in the distribution and migration of retinal pigment epithelial (RPE) melanosomes and phagosomes, and in the regulation of opsin transport in retinal photoreceptors. In the inner ear, plays an important role in differentiation, morphogenesis and organization of cochlear hair cell bundles. Involved in hair-cell vesicle trafficking of aminoglycosides, which are known to induce ototoxicity. Motor protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.
Subunit / interactions. Might homodimerize in a two headed molecule through the formation of a coiled-coil rod. Identified in a complex with USH1C and USH1G. Interacts with MYRIP. Interacts with RPE65. Interacts with CIB2. May interact with CALM. Interacts with WHRN. Interacts with PLEKHB1 (via PH domain). Interacts with PCDH15. Interacts with TWF2. Interacts with USH1G. Interacts with MYH9. Interacts (via MyTH4-FERM domains) with cytoplasmic regions of ADGRV1 and USH2A. Interacts with PDZD7 (via MyTH4-FERM domains). Interacts with CALML4.
Subcellular location. Cytoplasm. Cell cortex. Cytoskeleton. Synapse.
Tissue specificity. Expressed in the pigment epithelium and the photoreceptor cells of the retina. Also found in kidney, liver, testis, cochlea, lymphocytes. Not expressed in brain.
Disease relevance. Usher syndrome 1B (USH1B) [MIM:276900] USH is a genetically heterogeneous condition characterized by the association of retinitis pigmentosa with sensorineural deafness. Age at onset and differences in auditory and vestibular function distinguish Usher syndrome type 1 (USH1), Usher syndrome type 2 (USH2) and Usher syndrome type 3 (USH3). USH1 is characterized by profound congenital sensorineural deafness, absent vestibular function and prepubertal onset of progressive retinitis pigmentosa leading to blindness. The disease is caused by variants affecting the gene represented in this entry. Deafness, autosomal recessive, 2 (DFNB2) [MIM:600060] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. The disease is caused by variants affecting the gene represented in this entry. Deafness, autosomal dominant, 11 (DFNA11) [MIM:601317] A form of non-syndromic sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information. DFNA11 is characterized by onset after complete speech acquisition and subsequent gradual progression. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. ATP hydrolysis is inhibited by Mg(2+), already at a concentration of 0.4 mM.
Domain organisation. The SAH (single alpha-helix) region is characterized by a high content of charged residues which are predicted to stabilize the alpha-helical structure by ionic bonds.
Similarity. Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q13402-1 | 1 | yes |
| Q13402-2 | 2 | |
| Q13402-3 | 3 | |
| Q13402-4 | 4 | |
| Q13402-5 | 5 | |
| Q13402-6 | 6 | |
| Q13402-7 | 7 | |
| Q13402-8 | 8 |
RefSeq proteins (3): NP_000251, NP_001120652, NP_001356294 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ_motif_EF-hand-BS | Binding_site |
| IPR000299 | FERM_domain | Domain |
| IPR000857 | MyTH4_dom | Domain |
| IPR001452 | SH3_domain | Domain |
| IPR001609 | Myosin_head_motor_dom-like | Domain |
| IPR002404 | IRS_PTB | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR014352 | FERM/acyl-CoA-bd_prot_sf | Homologous_superfamily |
| IPR019748 | FERM_central | Domain |
| IPR019749 | Band_41_domain | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR035963 | FERM_2 | Homologous_superfamily |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
| IPR036106 | MYSc_Myo7 | Domain |
| IPR036961 | Kinesin_motor_dom_sf | Homologous_superfamily |
| IPR038185 | MyTH4_dom_sf | Homologous_superfamily |
| IPR041793 | MyoVII_FERM_C1 | Domain |
| IPR041794 | MyoVII_FERM_C2 | Domain |
| IPR051567 | Unconventional_Myosin_ATPase | Family |
| IPR057130 | Myosin_VII_N | Domain |
Pfam: PF00063, PF00612, PF00784, PF02174, PF21989, PF21998, PF24123
UniProt features (151 total): sequence variant 74, helix 23, strand 13, domain 11, splice variant 10, sequence conflict 7, turn 7, region of interest 2, modified residue 2, chain 1, binding site 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5MV9 | X-RAY DIFFRACTION | 2.6 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q13402-F1 | 77.73 | 0.16 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 158–165
Post-translational modifications (2): 1569, 1571
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-2453902 | The canonical retinoid cycle in rods (twilight vision) |
| R-HSA-9662360 | Sensory processing of sound by inner hair cells of the cochlea |
| R-HSA-9662361 | Sensory processing of sound by outer hair cells of the cochlea |
| R-HSA-2187338 | Visual phototransduction |
| R-HSA-9659379 | Sensory processing of sound |
| R-HSA-9709957 | Sensory Perception |
MSigDB gene sets: 322 (showing top):
GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_UP, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_PIGMENT_GRANULE_LOCALIZATION, GOBP_VACUOLE_ORGANIZATION, GOBP_VESICLE_LOCALIZATION, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, GOCC_VACUOLAR_MEMBRANE, GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, GOBP_VESICLE_ORGANIZATION, GCANCTGNY_MYOD_Q6, STEARMAN_LUNG_CANCER_EARLY_VS_LATE_DN, GOBP_CELLULAR_PIGMENTATION, GOBP_NEUROGENESIS, GOBP_VESICLE_MEDIATED_TRANSPORT, chr11q13
GO Biological Process (32): phagolysosome assembly (GO:0001845), intracellular protein transport (GO:0006886), endocytosis (GO:0006897), actin filament organization (GO:0007015), lysosome organization (GO:0007040), sensory organ development (GO:0007423), visual perception (GO:0007601), sensory perception of sound (GO:0007605), intracellular protein localization (GO:0008104), actin filament-based movement (GO:0030048), eye photoreceptor cell development (GO:0042462), mechanoreceptor differentiation (GO:0042490), sensory perception of light stimulus (GO:0050953), equilibrioception (GO:0050957), pigment granule transport (GO:0051904), auditory receptor cell stereocilium organization (GO:0060088), cochlea development (GO:0090102), system process (GO:0003008), phagocytosis (GO:0006909), sensory perception (GO:0007600), anatomical structure morphogenesis (GO:0009653), cell projection organization (GO:0030030), inner ear morphogenesis (GO:0042472), inner ear auditory receptor cell differentiation (GO:0042491), animal organ development (GO:0048513), neuron development (GO:0048666), system development (GO:0048731), inner ear development (GO:0048839), pigment granule localization (GO:0051875), inner ear receptor cell differentiation (GO:0060113), inner ear receptor cell stereocilium organization (GO:0060122), sensory organ morphogenesis (GO:0090596)
GO Molecular Function (13): microfilament motor activity (GO:0000146), calmodulin binding (GO:0005516), ATP binding (GO:0005524), protein domain specific binding (GO:0019904), spectrin binding (GO:0030507), identical protein binding (GO:0042802), ADP binding (GO:0043531), actin filament binding (GO:0051015), nucleotide binding (GO:0000166), cytoskeletal motor activity (GO:0003774), actin binding (GO:0003779), protein binding (GO:0005515), protein-containing complex binding (GO:0044877)
GO Cellular Component (20): photoreceptor outer segment (GO:0001750), photoreceptor inner segment (GO:0001917), cytoplasm (GO:0005737), lysosomal membrane (GO:0005765), cytosol (GO:0005829), microvillus (GO:0005902), cell cortex (GO:0005938), actin cytoskeleton (GO:0015629), membrane (GO:0016020), apical plasma membrane (GO:0016324), myosin VII complex (GO:0031477), photoreceptor connecting cilium (GO:0032391), stereocilium (GO:0032420), melanosome (GO:0042470), synapse (GO:0045202), stereocilium base (GO:0120044), upper tip-link density (GO:1990435), cytoskeleton (GO:0005856), myosin complex (GO:0016459), photoreceptor cell cilium (GO:0097733)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Sensory processing of sound | 2 |
| Sensory Perception | 2 |
| Visual phototransduction | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 6 |
| protein binding | 3 |
| sensory perception | 2 |
| adenyl ribonucleotide binding | 2 |
| cytoskeletal protein binding | 2 |
| protein-containing complex binding | 2 |
| binding | 2 |
| photoreceptor cell cilium | 2 |
| cytoplasm | 2 |
| actin-based cell projection | 2 |
| neuron projection | 2 |
| phagocytosis | 1 |
| lysosome organization | 1 |
| vesicle organization | 1 |
| organelle assembly | 1 |
| phagosome maturation | 1 |
| intracellular protein localization | 1 |
| protein transport | 1 |
| intracellular transport | 1 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| lytic vacuole organization | 1 |
| animal organ development | 1 |
| sensory perception of light stimulus | 1 |
| sensory perception of mechanical stimulus | 1 |
| macromolecule localization | 1 |
| actin filament-based process | 1 |
| eye photoreceptor cell differentiation | 1 |
| photoreceptor cell development | 1 |
| neuron differentiation | 1 |
| neuromuscular process controlling balance | 1 |
| transport | 1 |
| pigment granule localization | 1 |
| establishment of pigment granule localization | 1 |
| auditory receptor cell morphogenesis | 1 |
| inner ear receptor cell stereocilium organization | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
10 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ADAM10 | MYO7A | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| Whrn | MYO7A | psi-mi:“MI:0915”(physical association) | 0.400 |
| NEK4 | E2F8 | psi-mi:“MI:0914”(association) | 0.350 |
| ITM2B | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| LANCL1 | MYO7A | psi-mi:“MI:0914”(association) | 0.350 |
| MYO7A | RPE65 | psi-mi:“MI:0403”(colocalization) | 0.270 |
| STK38L | SH3PXD2B | psi-mi:“MI:2364”(proximity) | 0.270 |
| STK38L | CCDC187 | psi-mi:“MI:2364”(proximity) | 0.270 |
| RIPOR1 | MYO7A | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (33): MYO7A (Affinity Capture-MS), PRKAR1A (Two-hybrid), VEZT (Two-hybrid), MYO7A (Affinity Capture-MS), MYO7A (Affinity Capture-MS), MYO7A (Affinity Capture-MS), MYO7A (Protein-RNA), MYO7A (Affinity Capture-MS), MYO7A (Reconstituted Complex), VEZT (Affinity Capture-Western), CTNNA1 (Affinity Capture-Western), CTNNB1 (Affinity Capture-Western), CDH1 (Affinity Capture-Western), KEAP1 (Two-hybrid), MYO7A (Affinity Capture-MS)
ESM2 similar proteins: A0MP03, A3LYL7, A5DKH0, A5PF48, A6ZMG6, E7F9L8, E9Q634, F1PRN2, F4I460, F4JM19, O00159, O00160, O08638, O88329, O94832, P10568, P10587, P11055, P35748, P35749, P70248, P97479, Q01989, Q04439, Q076A3, Q12965, Q13402, Q17LW0, Q17R14, Q23979, Q27966, Q29P71, Q5SYD0, Q5ZLA6, Q62774, Q62812, Q63355, Q63356, Q63357, Q6BUQ2
Diamond homologs: A0MP03, A1C4A5, A1DBH2, A2R5J1, A3LYL7, A4RE77, A5DKH0, A5E4A8, A5PF48, A6SED8, A6ZMG6, A6ZZJ1, A7EK16, A7TDZ8, A8N2Y6, A8PWF6, B0CRJ3, B0I1T2, B0Y9Q4, D3ZJP6, E7F9L8, E9Q634, F1PRN2, F4HWY6, F4I5Q6, F4IUG9, F4IVR7, F4JM19, F4K5J1, K7U9N8, O00159, O00160, O43795, O88329, O94832, P0CP00, P0CP01, P10568, P10569, P19706
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| MYO7A | “form complex” | “TIP-LINK complex” | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
5055 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 414 |
| Likely pathogenic | 362 |
| Uncertain significance | 1556 |
| Likely benign | 1993 |
| Benign | 170 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1024657 | NM_000260.4(MYO7A):c.492G>C (p.Lys164Asn) | Pathogenic |
| 1068524 | NM_000260.4(MYO7A):c.4422T>G (p.Tyr1474Ter) | Pathogenic |
| 1068826 | NM_000260.4(MYO7A):c.2440dup (p.Arg814fs) | Pathogenic |
| 1070081 | NM_000260.4(MYO7A):c.2722del (p.Asp908fs) | Pathogenic |
| 1070293 | NM_000260.4(MYO7A):c.5623C>T (p.Gln1875Ter) | Pathogenic |
| 1070468 | NC_000011.10:g.77158278del | Pathogenic |
| 1070839 | NM_000260.4(MYO7A):c.6348_6352dup (p.Lys2118delinsArgTer) | Pathogenic |
| 1071057 | NM_000260.4(MYO7A):c.5428A>T (p.Lys1810Ter) | Pathogenic |
| 1071264 | NM_000260.4(MYO7A):c.5906dup (p.Leu1969fs) | Pathogenic |
| 1071807 | NM_000260.4(MYO7A):c.6297del (p.Phe2100fs) | Pathogenic |
| 1072636 | NM_000260.4(MYO7A):c.4521_4522del (p.Leu1508fs) | Pathogenic |
| 1073624 | NM_000260.4(MYO7A):c.4770dup (p.Arg1591fs) | Pathogenic |
| 1073698 | NM_000260.4(MYO7A):c.55G>T (p.Glu19Ter) | Pathogenic |
| 1073929 | NM_000260.4(MYO7A):c.733C>T (p.Gln245Ter) | Pathogenic |
| 1074478 | NM_000260.4(MYO7A):c.849+2T>C | Pathogenic |
| 1074479 | NM_000260.4(MYO7A):c.1003+1G>A | Pathogenic |
| 1074848 | NM_000260.4(MYO7A):c.4800del (p.Leu1601fs) | Pathogenic |
| 1075115 | NM_000260.4(MYO7A):c.3249C>A (p.Tyr1083Ter) | Pathogenic |
| 1075570 | NM_000260.4(MYO7A):c.2186del (p.Lys729fs) | Pathogenic |
| 1076114 | NM_000260.4(MYO7A):c.4436del (p.Phe1479fs) | Pathogenic |
| 1076122 | NM_000260.4(MYO7A):c.6126C>G (p.Tyr2042Ter) | Pathogenic |
| 1076809 | NM_000260.4(MYO7A):c.4674G>A (p.Trp1558Ter) | Pathogenic |
| 1076994 | NM_000260.4(MYO7A):c.1717del (p.Leu573fs) | Pathogenic |
| 1076995 | NM_000260.4(MYO7A):c.3564_3570del (p.Ser1187_Tyr1188insTer) | Pathogenic |
| 1180739 | NM_000260.4(MYO7A):c.5567del (p.Arg1856fs) | Pathogenic |
| 11847 | NM_000260.4(MYO7A):c.448C>T (p.Arg150Ter) | Pathogenic |
| 11848 | NM_000260.4(MYO7A):c.700C>T (p.Gln234Ter) | Pathogenic |
| 11849 | NM_000260.4(MYO7A):c.652_657del (p.Asp218_Ile219del) | Pathogenic |
| 1184925 | NM_000260.4(MYO7A):c.6089del (p.Thr2030fs) | Pathogenic |
| 11853 | NM_000260.4(MYO7A):c.731G>C (p.Arg244Pro) | Pathogenic |
SpliceAI
8991 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:77142703:CCATA:C | acceptor_loss | 1.0000 |
| 11:77142704:CATA:C | acceptor_loss | 1.0000 |
| 11:77142706:TAGGG:T | acceptor_loss | 1.0000 |
| 11:77142707:A:C | acceptor_loss | 1.0000 |
| 11:77142707:AGGG:A | acceptor_gain | 1.0000 |
| 11:77142708:G:C | acceptor_loss | 1.0000 |
| 11:77142708:GGGG:G | acceptor_gain | 1.0000 |
| 11:77142819:CAAT:C | donor_gain | 1.0000 |
| 11:77142819:CAATG:C | donor_loss | 1.0000 |
| 11:77142821:AT:A | donor_gain | 1.0000 |
| 11:77142821:ATG:A | donor_loss | 1.0000 |
| 11:77142822:TGT:T | donor_loss | 1.0000 |
| 11:77142823:G:GC | donor_loss | 1.0000 |
| 11:77142823:G:GG | donor_gain | 1.0000 |
| 11:77142824:TGA:T | donor_loss | 1.0000 |
| 11:77142825:GAG:G | donor_loss | 1.0000 |
| 11:77147946:TCTAC:T | donor_gain | 1.0000 |
| 11:77147947:CTACG:C | donor_loss | 1.0000 |
| 11:77147948:TACGT:T | donor_loss | 1.0000 |
| 11:77147949:ACGT:A | donor_loss | 1.0000 |
| 11:77147950:CGTG:C | donor_loss | 1.0000 |
| 11:77147951:G:GG | donor_gain | 1.0000 |
| 11:77147951:GT:G | donor_loss | 1.0000 |
| 11:77147952:T:A | donor_loss | 1.0000 |
| 11:77156655:T:TA | acceptor_gain | 1.0000 |
| 11:77156658:A:AG | acceptor_gain | 1.0000 |
| 11:77156658:AGT:A | acceptor_gain | 1.0000 |
| 11:77156658:AGTG:A | acceptor_gain | 1.0000 |
| 11:77156658:AGTGG:A | acceptor_gain | 1.0000 |
| 11:77156659:G:GC | acceptor_gain | 1.0000 |
AlphaMissense
14632 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:77147919:T:C | L85P | 1.000 |
| 11:77156034:C:A | A138D | 1.000 |
| 11:77156090:A:C | S157R | 1.000 |
| 11:77156660:T:A | S157R | 1.000 |
| 11:77156660:T:G | S157R | 1.000 |
| 11:77156661:G:A | G158R | 1.000 |
| 11:77156661:G:C | G158R | 1.000 |
| 11:77156661:G:T | G158W | 1.000 |
| 11:77156662:G:A | G158E | 1.000 |
| 11:77156704:T:C | L172P | 1.000 |
| 11:77156763:G:C | A192P | 1.000 |
| 11:77156867:G:T | G200W | 1.000 |
| 11:77156868:G:A | G200E | 1.000 |
| 11:77156930:T:C | F221L | 1.000 |
| 11:77156931:T:C | F221S | 1.000 |
| 11:77156932:C:A | F221L | 1.000 |
| 11:77156932:C:G | F221L | 1.000 |
| 11:77156949:T:A | I227N | 1.000 |
| 11:77158350:T:C | L308P | 1.000 |
| 11:77161079:T:C | L436P | 1.000 |
| 11:77161091:G:A | G440E | 1.000 |
| 11:77162158:T:C | L461P | 1.000 |
| 11:77162241:T:C | F489L | 1.000 |
| 11:77162243:C:A | F489L | 1.000 |
| 11:77162243:C:G | F489L | 1.000 |
| 11:77162302:T:C | L509P | 1.000 |
| 11:77162322:T:C | F516L | 1.000 |
| 11:77162324:C:A | F516L | 1.000 |
| 11:77162324:C:G | F516L | 1.000 |
| 11:77166074:G:C | R570P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000052538 (11:77184333 G>A,C), RS1000058995 (11:77211023 T>C), RS1000108583 (11:77178985 C>T), RS1000140997 (11:77126993 C>A,G), RS1000193307 (11:77199252 A>G), RS1000194093 (11:77164169 A>G), RS1000246671 (11:77173663 C>G,T), RS1000251600 (11:77200721 G>A), RS1000252160 (11:77159136 A>G), RS1000337889 (11:77132556 T>G), RS1000475904 (11:77128203 C>T), RS1000511860 (11:77213639 C>T), RS1000527156 (11:77200417 T>C), RS1000556151 (11:77144744 T>C), RS1000629143 (11:77170658 A>G)
Disease associations
OMIM: gene MIM:276903 | disease phenotypes: MIM:276900, MIM:600060, MIM:601317, MIM:128600, MIM:268000, MIM:220290, MIM:607197, MIM:156000, MIM:274600, MIM:619274, MIM:609129, MIM:120970, MIM:216550
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| autosomal recessive nonsyndromic hearing loss 2 | Definitive | Autosomal recessive |
| Usher syndrome type 1 | Definitive | Autosomal recessive |
| nonsyndromic genetic hearing loss | Definitive | Autosomal dominant |
| Usher syndrome type 1B | Definitive | Autosomal recessive |
| autosomal dominant nonsyndromic hearing loss 11 | Strong | Autosomal dominant |
| Usher syndrome type 2 | Supportive | Autosomal recessive |
| autosomal dominant nonsyndromic hearing loss | Supportive | Autosomal dominant |
| hearing loss, autosomal recessive | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| Usher syndrome type 1 | Definitive | AR |
| nonsyndromic genetic hearing loss | Definitive | AD |
Mondo (26): Usher syndrome type 1B (MONDO:0700087), Usher syndrome type 1 (MONDO:0010168), autosomal recessive nonsyndromic hearing loss 2 (MONDO:0010807), autosomal dominant nonsyndromic hearing loss 11 (MONDO:0011032), hearing loss disorder (MONDO:0005365), Usher syndrome (MONDO:0019501), inherited retinal dystrophy (MONDO:0019118), nonsyndromic genetic hearing loss (MONDO:0019497), ear malformation (MONDO:0007500), retinitis pigmentosa (MONDO:0019200), hearing loss, autosomal recessive (MONDO:0019588), retinal disorder (MONDO:0005283), hypoglycemia (MONDO:0004946), sensorineural hearing loss disorder (MONDO:0020678), microcephaly (MONDO:0001149)
Orphanet (15): Usher syndrome type 1 (Orphanet:231169), Usher syndrome (Orphanet:886), Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636), Rare autosomal dominant non-syndromic sensorineural deafness type DFNA (Orphanet:90635), OBSOLETE: Inherited retinal disorder (Orphanet:71862), Rare non-syndromic genetic deafness (Orphanet:87884), Rare genetic deafness (Orphanet:96210), Retinitis pigmentosa (Orphanet:791), Pendred syndrome (Orphanet:705), Cone rod dystrophy (Orphanet:1872), Usher syndrome type 2 (Orphanet:231178), Hereditary breast and/or ovarian cancer syndrome (Orphanet:145), Cohen syndrome (Orphanet:193), NON RARE IN EUROPE: Menière disease (Orphanet:45360), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
33 total (30 of 33 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000359 | Abnormality of the inner ear |
| HP:0000375 | Abnormal cochlea morphology |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000518 | Cataract |
| HP:0000545 | Myopia |
| HP:0000550 | Undetectable electroretinogram |
| HP:0000551 | Color vision defect |
| HP:0000572 | Visual loss |
| HP:0000575 | Scotoma |
| HP:0000639 | Nystagmus |
| HP:0000662 | Nyctalopia |
| HP:0000716 | Depression |
| HP:0000739 | Anxiety |
| HP:0000750 | Delayed speech and language development |
| HP:0001133 | Constriction of peripheral visual field |
| HP:0001270 | Motor delay |
| HP:0001751 | Abnormal vestibular function |
| HP:0002141 | Gait imbalance |
| HP:0002321 | Vertigo |
| HP:0002360 | Sleep disturbance |
| HP:0003577 | Congenital onset |
| HP:0003593 | Infantile onset |
| HP:0007663 | Reduced visual acuity |
| HP:0007730 | Iris hypopigmentation |
| HP:0007994 | Peripheral visual field loss |
| HP:0008555 | Absent vestibular function |
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002591_6 | Lewy body disease | 4.000000e-06 |
| GCST003264_1093 | Post bronchodilator FEV1/FVC ratio | 4.000000e-06 |
| GCST007277_15 | Tourette syndrome | 5.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006799 | Lewy body dementia measurement |
| EFO:0004713 | FEV/FVC ratio |
MeSH disease descriptors (20)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000071700 | Cone-Rod Dystrophies | C11.270.152; C11.768.585.658.250; C16.320.290.152 |
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| D061325 | Hereditary Breast and Ovarian Cancer Syndrome | C04.588.180.483; C04.588.322.455.431; C04.700.517; C12.050.351.500.056.630.705.431; C12.050.351.937.418.685.431; C12.100.250.056.630.705.431; C12.900.418.685.431; C16.320.700.517; C17.800.090.500.483; C19.344.410.431; C19.391.630.705.431 |
| D007003 | Hypoglycemia | C18.452.394.984 |
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| D008575 | Meniere Disease | C09.218.568.217.500 |
| D008831 | Microcephaly | C05.660.207.620; C10.500.507.400.500; C16.131.621.207.620; C16.131.666.507.400.500 |
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D012164 | Retinal Diseases | C11.768 |
| D058499 | Retinal Dystrophies | C11.768.585.658 |
| D012174 | Retinitis Pigmentosa | C11.270.684; C11.768.585.658.500; C16.320.290.684 |
| D052245 | Usher Syndromes | C09.218.458.341.186.500.500; C09.218.458.341.887.886; C10.597.751.418.341.186.500.500; C10.597.751.418.341.887.886; C10.597.751.941.162.625.500; C11.768.585.658.500.813; C11.966.075.375.500; C16.131.077.299.500; C16.320.290.684.500; C23.888.592.763.393.341.887.886 |
| C538268 | Auditory neuropathy (supp.) | |
| C536438 | Cohen syndrome (supp.) | |
| C563353 | Deafness, Autosomal Dominant 11 (supp.) | |
| C564609 | Deafness, Autosomal Recessive (supp.) | |
| C564007 | Deafness, Autosomal Recessive 2 (supp.) | |
| C580334 | Nonsyndromic Deafness (supp.) | |
| C536648 | Pendred syndrome (supp.) | |
| C536485 | Usher syndrome, type 1B (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, increases methylation | 4 |
| Valproic Acid | affects cotreatment, increases expression | 4 |
| Tobacco Smoke Pollution | decreases methylation, increases expression | 2 |
| Aflatoxin B1 | decreases expression, affects methylation | 2 |
| bisphenol A | affects cotreatment, increases methylation | 1 |
| 2-methyl-4-isothiazolin-3-one | increases expression | 1 |
| trichostatin A | increases expression | 1 |
| aflatoxin B2 | affects methylation | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | increases expression, affects cotreatment | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| jinfukang | increases expression, affects cotreatment | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Air Pollutants | affects expression, increases abundance | 1 |
| Amphotericin B | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Asbestos | affects expression | 1 |
| Cadmium | decreases expression | 1 |
| Caffeine | increases phosphorylation | 1 |
| Cisplatin | affects cotreatment, increases expression | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Ozone | increases abundance, affects expression | 1 |
| Quercetin | decreases expression | 1 |
| Antirheumatic Agents | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Particulate Matter | decreases expression | 1 |
Clinical trials (associated diseases)
307 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT01530659 | PHASE2 | COMPLETED | Retinal Imaging in CNTF -Releasing Encapsulated Cell Implant Treated Patients for Early-stage Retinitis Pigmentosa |
| NCT05085964 | PHASE2 | TERMINATED | An Open-Label Extension Study to Evaluate Safety & Tolerability of QR-421a in Subjects With Retinitis Pigmentosa |
| NCT06627179 | PHASE2 | RECRUITING | Study to Evaluate Ultevursen in Subjects With Retinitis Pigmentosa (RP) Due to Mutations in Exon 13 of the USH2A Gene |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT04041440 | PHASE1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | PHASE1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT01802190 | Not specified | TERMINATED | Prevalence of POU4F3 and SLC17A8 Mutations |
| NCT06591793 | PHASE1/PHASE2 | RECRUITING | Study of Subretinally Injected AAVB-081 in Patients With Usher Syndrome Type IB (USH1B) Retinitis Pigmentosa |
| NCT03655223 | Not specified | ENROLLING_BY_INVITATION | Early Check: Expanded Screening in Newborns |
| NCT03814499 | Not specified | COMPLETED | Natural History Study in Subjects With Usher Syndrome |
| NCT05158296 | PHASE2/PHASE3 | TERMINATED | Study to Evaluate the Efficacy Safety and Tolerability of Ultevursen in Subjects With RP Due to Mutations in Exon 13 of the USH2A Gene (Sirius) |
| NCT05176717 | PHASE2/PHASE3 | TERMINATED | Study to Evaluate the Efficacy Safety and Tolerability of QR-421a in Subjects With RP Due to Mutations in Exon 13 of the USH2A Gene With Early to Moderate Vision Loss (Celeste) |
| NCT03780257 | PHASE1/PHASE2 | COMPLETED | Study to Evaluate Safety and Tolerability of QR-421a in Subjects With RP Due to Mutations in Exon 13 of the USH2A Gene |
Related Atlas pages
- Associated diseases: autosomal recessive nonsyndromic hearing loss 2, autosomal dominant nonsyndromic hearing loss 11, Usher syndrome type 1, nonsyndromic genetic hearing loss, Usher syndrome type 1B, Usher syndrome type 2, autosomal dominant nonsyndromic hearing loss, hearing loss, autosomal recessive
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): auditory neuropathy, autosomal dominant nonsyndromic hearing loss, autosomal dominant nonsyndromic hearing loss 11, autosomal recessive nonsyndromic hearing loss 2, Cohen syndrome, ear malformation, hearing loss, autosomal dominant 80, hearing loss, autosomal recessive, hypoglycemia, Lewy body dementia, Meniere disease, nonsyndromic genetic hearing loss, Pendred syndrome, sensorineural hearing loss disorder, Usher syndrome, Usher syndrome type 1, Usher syndrome type 1B, Usher syndrome type 2