MYO7B
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Summary
MYO7B (myosin VIIB, HGNC:7607) is a protein-coding gene on chromosome 2q14.3, encoding Unconventional myosin-VIIb (Q6PIF6). Myosins are actin-based motor molecules with ATPase activity.
The protein encoded by this gene is found in brush border microvilli of epithelial cells in the intestines and kidneys. The encoded protein is involved in linking protocadherins to the actin cytoskeleton and is essential for proper microvilli function. This protein aids in the accumulation of intermicrovillar adhesion components such as harmonin and ANKS4B, and this accumulation is necessary for normal brush border action.
Source: NCBI Gene 4648 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 456 total
- MANE Select transcript:
NM_001393586
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7607 |
| Approved symbol | MYO7B |
| Name | myosin VIIB |
| Location | 2q14.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000169994 |
| Ensembl biotype | protein_coding |
| OMIM | 606541 |
| Entrez | 4648 |
Gene structure
Transcript identifiers
Ensembl transcripts: 9 — 6 protein_coding, 3 retained_intron
ENST00000409090, ENST00000409816, ENST00000428314, ENST00000437387, ENST00000491278, ENST00000494959, ENST00000496841, ENST00000897058, ENST00000897059
RefSeq mRNA: 3 — MANE Select: NM_001393586
NM_001080527, NM_001393586, NM_001393594
CCDS: CCDS46405, CCDS92860, CCDS92861
Canonical transcript exons
ENST00000409816 — 48 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001019249 | 127634176 | 127634289 |
| ENSE00001587703 | 127637316 | 127637726 |
| ENSE00002434718 | 127584778 | 127584913 |
| ENSE00002436761 | 127608708 | 127608878 |
| ENSE00002447972 | 127609506 | 127609715 |
| ENSE00002448384 | 127590092 | 127590229 |
| ENSE00002459358 | 127612476 | 127612603 |
| ENSE00002462414 | 127565233 | 127565385 |
| ENSE00002468688 | 127584122 | 127584332 |
| ENSE00002469382 | 127607206 | 127607424 |
| ENSE00002473104 | 127592794 | 127592946 |
| ENSE00002478440 | 127573920 | 127574062 |
| ENSE00002482158 | 127581891 | 127582010 |
| ENSE00002494756 | 127576595 | 127576708 |
| ENSE00002496372 | 127588392 | 127588555 |
| ENSE00002496761 | 127569789 | 127569910 |
| ENSE00002498247 | 127578133 | 127578286 |
| ENSE00002500732 | 127564153 | 127564266 |
| ENSE00002501602 | 127566643 | 127566827 |
| ENSE00002503619 | 127605844 | 127605928 |
| ENSE00002510660 | 127609849 | 127610016 |
| ENSE00002513969 | 127582304 | 127582446 |
| ENSE00002524427 | 127596462 | 127596556 |
| ENSE00002530892 | 127580746 | 127580822 |
| ENSE00002533082 | 127593546 | 127593644 |
| ENSE00002613344 | 127612250 | 127612327 |
| ENSE00002718685 | 127559700 | 127559740 |
| ENSE00002732020 | 127634596 | 127634683 |
| ENSE00003459055 | 127633258 | 127633363 |
| ENSE00003463533 | 127636794 | 127636913 |
| ENSE00003471915 | 127629645 | 127629826 |
| ENSE00003490805 | 127636208 | 127636324 |
| ENSE00003515643 | 127635722 | 127635907 |
| ENSE00003518226 | 127626975 | 127627092 |
| ENSE00003549481 | 127636545 | 127636628 |
| ENSE00003553471 | 127631206 | 127631363 |
| ENSE00003557332 | 127631600 | 127631753 |
| ENSE00003567251 | 127627184 | 127627310 |
| ENSE00003572868 | 127625368 | 127625535 |
| ENSE00003627768 | 127620340 | 127620466 |
| ENSE00003647294 | 127623202 | 127623375 |
| ENSE00003662295 | 127630778 | 127630908 |
| ENSE00003677194 | 127621982 | 127622101 |
| ENSE00003678743 | 127628372 | 127628535 |
| ENSE00003684058 | 127635120 | 127635226 |
| ENSE00003688352 | 127632246 | 127632401 |
| ENSE00003786599 | 127624093 | 127624320 |
| ENSE00003931675 | 127535683 | 127535831 |
Expression profiles
Bgee: expression breadth ubiquitous, 170 present calls, max score 98.17.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.5310 / max 520.8907, expressed in 91 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 22434 | 0.8648 | 42 |
| 22433 | 0.3172 | 28 |
| 22442 | 0.1427 | 30 |
| 22439 | 0.1322 | 24 |
| 22435 | 0.0741 | 11 |
Top tissues by expression
236 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| ileal mucosa | UBERON:0000331 | 98.17 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 96.87 | gold quality |
| duodenum | UBERON:0002114 | 94.77 | gold quality |
| transverse colon | UBERON:0001157 | 94.48 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 94.22 | gold quality |
| small intestine | UBERON:0002108 | 93.56 | gold quality |
| jejunal mucosa | UBERON:0000399 | 93.04 | gold quality |
| spleen | UBERON:0002106 | 90.52 | gold quality |
| rectum | UBERON:0001052 | 90.51 | gold quality |
| intestine | UBERON:0000160 | 89.85 | gold quality |
| colon | UBERON:0001155 | 89.27 | gold quality |
| large intestine | UBERON:0000059 | 88.87 | gold quality |
| kidney epithelium | UBERON:0004819 | 88.71 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 86.81 | gold quality |
| upper arm skin | UBERON:0004263 | 85.47 | gold quality |
| jejunum | UBERON:0002115 | 84.94 | gold quality |
| heart left ventricle | UBERON:0002084 | 83.96 | gold quality |
| right lung | UBERON:0002167 | 83.77 | gold quality |
| cardiac ventricle | UBERON:0002082 | 83.73 | gold quality |
| gall bladder | UBERON:0002110 | 83.39 | gold quality |
| apex of heart | UBERON:0002098 | 83.28 | gold quality |
| colonic mucosa | UBERON:0000317 | 83.04 | gold quality |
| corpus epididymis | UBERON:0004359 | 82.96 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 81.89 | gold quality |
| metanephros cortex | UBERON:0010533 | 81.79 | gold quality |
| parotid gland | UBERON:0001831 | 81.72 | gold quality |
| colonic epithelium | UBERON:0000397 | 81.34 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 81.11 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 81.01 | gold quality |
| vena cava | UBERON:0004087 | 80.17 | silver quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 12.51 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
16 targeting MYO7B, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-6878-3P | 99.24 | 64.23 | 920 |
| HSA-MIR-4292 | 99.16 | 65.57 | 1767 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-661 | 99.09 | 65.94 | 2062 |
| HSA-MIR-4651 | 99.06 | 67.57 | 2002 |
| HSA-MIR-608 | 98.93 | 67.83 | 2013 |
| HSA-MIR-665 | 97.60 | 65.64 | 1781 |
| HSA-MIR-6812-5P | 97.56 | 65.39 | 1059 |
| HSA-MIR-6742-5P | 96.32 | 64.01 | 869 |
| HSA-MIR-744-5P | 93.78 | 65.29 | 230 |
| HSA-MIR-4707-3P | 86.55 | 62.02 | 99 |
Literature-anchored findings (GeneRIF, showing 2)
- Data revealed that six polymorphisms of F10, PITRM1, PCSK2, JPH3, MYO7B, and AKAP12 were related (P<0.05) to the prevalence of chronic kidney disease. (PMID:19724895)
- The structure of the Myo7b CMF/USH1C PDZ complex provides mechanistic explanations for >20 deafness-causing mutations in Myo7a CMF. Taken together, these findings suggest that binding to PDZ domains, such as those from USH1C, PDZD7, and Whirlin, is a common property of CMFs of Myo7a, Myo7b, and Myo15a. (PMID:28439001)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | myo7ba | ENSDARG00000044441 |
| danio_rerio | myo7bb | ENSDARG00000077201 |
| mus_musculus | Myo7b | ENSMUSG00000024388 |
| rattus_norvegicus | Myo7b | ENSRNOG00000015035 |
| drosophila_melanogaster | Myo28B1 | FBGN0040299 |
| caenorhabditis_elegans | WBGENE00002039 |
Paralogs (44): MYH13 (ENSG00000006788), MYO16 (ENSG00000041515), MYO9A (ENSG00000066933), MYO3B (ENSG00000071909), MYH7B (ENSG00000078814), MYO15A (ENSG00000091536), MYH7 (ENSG00000092054), MYO3A (ENSG00000095777), MYO9B (ENSG00000099331), MYH9 (ENSG00000100345), MYH14 (ENSG00000105357), MYH1 (ENSG00000109061), MYH3 (ENSG00000109063), MYH2 (ENSG00000125414), MYO1B (ENSG00000128641), MYO5C (ENSG00000128833), CGNL1 (ENSG00000128849), MYH8 (ENSG00000133020), MYH10 (ENSG00000133026), MYH11 (ENSG00000133392), MYO18B (ENSG00000133454), CCDC102A (ENSG00000135736), MYO1G (ENSG00000136286), MYO7A (ENSG00000137474), MYO1F (ENSG00000142347), CGN (ENSG00000143375), TMF1 (ENSG00000144747), MYH15 (ENSG00000144821), MYO10 (ENSG00000145555), CCDC102B (ENSG00000150636), MYO1E (ENSG00000157483), CCDC158 (ENSG00000163749), MYO1A (ENSG00000166866), MYO5B (ENSG00000167306), MYO1H (ENSG00000174527), MYO1D (ENSG00000176658), MYO18A (ENSG00000196535), MYO6 (ENSG00000196586), MYO5A (ENSG00000197535), MYH6 (ENSG00000197616)
Protein
Protein identifiers
Unconventional myosin-VIIb — Q6PIF6 (reviewed: Q6PIF6)
All UniProt accessions (4): Q6PIF6, A0A8C8KL71, B9A063, C9JC21
UniProt curated annotations — full annotation on UniProt →
Function. Myosins are actin-based motor molecules with ATPase activity. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. As part of the intermicrovillar adhesion complex/IMAC plays a role in epithelial brush border differentiation, controlling microvilli organization and length. May link the complex to the actin core bundle of microvilli.
Subunit / interactions. Part of the IMAC/intermicrovillar adhesion complex/intermicrovillar tip-link complex composed of ANKS4B, MYO7B, USH1C, CDHR2 and CDHR5. Interacts with CDHR2. Interacts with CDHR5. Interacts with USH1C. Interacts with ANKS4B; requires initial interaction with USH1C. Interacts with CALML4; the interaction mediates the association of CALML4 with the IMAC/intermicrovillar adhesion complex.
Subcellular location. Cytoplasm. Cytoskeleton. Cell projection. Microvillus.
Similarity. Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q6PIF6-1 | 1 | yes |
| Q6PIF6-2 | 2 |
RefSeq proteins (3): NP_001073996, NP_001380515, NP_001380523 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ_motif_EF-hand-BS | Binding_site |
| IPR000299 | FERM_domain | Domain |
| IPR000857 | MyTH4_dom | Domain |
| IPR001452 | SH3_domain | Domain |
| IPR001609 | Myosin_head_motor_dom-like | Domain |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR014352 | FERM/acyl-CoA-bd_prot_sf | Homologous_superfamily |
| IPR019748 | FERM_central | Domain |
| IPR019749 | Band_41_domain | Domain |
| IPR027417 | P-loop_NTPase | Homologous_superfamily |
| IPR029071 | Ubiquitin-like_domsf | Homologous_superfamily |
| IPR035963 | FERM_2 | Homologous_superfamily |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
| IPR036106 | MYSc_Myo7 | Domain |
| IPR036961 | Kinesin_motor_dom_sf | Homologous_superfamily |
| IPR038185 | MyTH4_dom_sf | Homologous_superfamily |
| IPR041793 | MyoVII_FERM_C1 | Domain |
| IPR041794 | MyoVII_FERM_C2 | Domain |
| IPR051567 | Unconventional_Myosin_ATPase | Family |
| IPR057130 | Myosin_VII_N | Domain |
Pfam: PF00063, PF00373, PF00612, PF00784, PF07653, PF21989, PF21998, PF24123
UniProt features (71 total): helix 24, domain 13, strand 12, turn 6, sequence variant 4, region of interest 3, modified residue 3, splice variant 2, sequence conflict 2, chain 1, binding site 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5XBF | X-RAY DIFFRACTION | 1.8 |
| 5MV8 | X-RAY DIFFRACTION | 1.88 |
| 5MV7 | X-RAY DIFFRACTION | 2.44 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q6PIF6-F1 | 78.34 | 0.19 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (1): 158–165
Post-translational modifications (3): 904, 1371, 1645
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 69 (showing top):
GOBP_SENSORY_PERCEPTION_OF_MECHANICAL_STIMULUS, GOBP_VESICLE_MEDIATED_TRANSPORT, SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM2, GOBP_ACTIN_FILAMENT_ORGANIZATION, GOMF_CYTOSKELETAL_MOTOR_ACTIVITY, GOBP_SENSORY_PERCEPTION, GOMF_ACTIN_BINDING, GOBP_SENSORY_ORGAN_DEVELOPMENT, GOBP_IMPORT_INTO_CELL, GOBP_ENDOCYTOSIS, chr2q14, GOCC_APICAL_PART_OF_CELL, GOCC_MICROVILLUS, GOCC_CLUSTER_OF_ACTIN_BASED_CELL_PROJECTIONS, GOCC_ACTIN_BASED_CELL_PROJECTION
GO Biological Process (7): endocytosis (GO:0006897), actin filament organization (GO:0007015), sensory organ development (GO:0007423), sensory perception of sound (GO:0007605), actin filament-based movement (GO:0030048), cell differentiation (GO:0030154), brush border assembly (GO:1904970)
GO Molecular Function (7): microfilament motor activity (GO:0000146), ATP binding (GO:0005524), actin filament binding (GO:0051015), nucleotide binding (GO:0000166), cytoskeletal motor activity (GO:0003774), actin binding (GO:0003779), protein binding (GO:0005515)
GO Cellular Component (9): cytoplasm (GO:0005737), microvillus (GO:0005902), brush border (GO:0005903), actin cytoskeleton (GO:0015629), membrane (GO:0016020), myosin complex (GO:0016459), apical cytoplasm (GO:0090651), cytoskeleton (GO:0005856), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| apical part of cell | 2 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| actin cytoskeleton organization | 1 |
| supramolecular fiber organization | 1 |
| animal organ development | 1 |
| sensory perception of mechanical stimulus | 1 |
| actin filament-based process | 1 |
| cellular developmental process | 1 |
| cellular component assembly | 1 |
| cytoskeletal motor activity | 1 |
| polypeptide conformation or assembly isomerase activity | 1 |
| ATP-dependent activity | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| actin binding | 1 |
| protein-containing complex binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| cytoskeletal protein binding | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| actin filament bundle | 1 |
| actin-based cell projection | 1 |
| microvillus | 1 |
| cluster of actin-based cell projections | 1 |
| cytoskeleton | 1 |
| actin cytoskeleton | 1 |
| protein-containing complex | 1 |
| cytoplasm | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
1064 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MYO7B | ANKS4B | Q8N8V4 | 899 |
| MYO7B | CDHR2 | Q9BYE9 | 790 |
| MYO7B | E9PNW1 | E9PNW1 | 778 |
| MYO7B | CDHR5 | Q9HBB8 | 702 |
| MYO7B | WHRN | Q9P202 | 581 |
| MYO7B | CALML4 | Q96GE6 | 486 |
| MYO7B | CALM1 | P02593 | 462 |
| MYO7B | CALML6 | Q8TD86 | 451 |
| MYO7B | CALML3 | P27482 | 450 |
| MYO7B | CALML5 | Q9NZT1 | 450 |
| MYO7B | PDZD7 | Q9H5P4 | 423 |
| MYO7B | MYO7A | P78427 | 421 |
| MYO7B | CDH23 | Q9H251 | 414 |
| MYO7B | ESPN | B1AK53 | 397 |
| MYO7B | LIMA1 | Q9UHB6 | 396 |
IntAct
9 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CDHR2 | MYO7B | psi-mi:“MI:0915”(physical association) | 0.460 |
| CDHR2 | MYO7B | psi-mi:“MI:0403”(colocalization) | 0.460 |
| MYO7B | HADHA | psi-mi:“MI:0915”(physical association) | 0.400 |
| CDHR5 | MYO7B | psi-mi:“MI:0915”(physical association) | 0.400 |
| MYO7B | USH1C | psi-mi:“MI:0915”(physical association) | 0.400 |
| PLEKHG3 | psi-mi:“MI:0914”(association) | 0.350 | |
| INSR | RIMOC1 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (5): MYO7B (Proximity Label-MS), MYO7B (Reconstituted Complex), MYO7B (Cross-Linking-MS (XL-MS)), MYO7B (Cross-Linking-MS (XL-MS)), MYO7B (Affinity Capture-MS)
ESM2 similar proteins: A0MP03, A2AQP0, A5PF48, A7E2Y1, B0I1T2, D3ZJP6, E7F9L8, F1PRN2, F4IUG9, F4JM19, F8VQB6, O00159, O88329, O94832, P08799, P10568, P79114, P91443, P97479, Q01989, Q03479, Q0WPU1, Q13402, Q17LW0, Q17R14, Q1EG27, Q23978, Q23979, Q27966, Q29P71, Q5SUA5, Q5SYD0, Q5ZLA6, Q5ZMC2, Q622K8, Q63355, Q63357, Q6GPA1, Q6PIF6, Q8K3H5
Diamond homologs: A0MP03, A1C4A5, A1DBH2, A2R5J1, A3LYL7, A4RE77, A5DKH0, A5E4A8, A5PF48, A6SED8, A6ZMG6, A6ZZJ1, A7EK16, A7TDZ8, A8N2Y6, A8PWF6, B0CRJ3, B0I1T2, B0Y9Q4, E7F9L8, E9Q634, F1PRN2, F4I5Q6, F4IRU3, F4IUG9, F4IVR7, F4JM19, F4K5J1, O00159, O00160, O43795, O88329, O94832, P08799, P0CP00, P0CP01, P10568, P10569, P19524, P19706
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
456 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 330 |
| Likely benign | 51 |
| Benign | 43 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
8644 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:127564143:T:A | acceptor_gain | 1.0000 |
| 2:127564147:CTCCA:C | acceptor_loss | 1.0000 |
| 2:127564148:TCCA:T | acceptor_loss | 1.0000 |
| 2:127564149:CCA:C | acceptor_loss | 1.0000 |
| 2:127564150:CAGGG:C | acceptor_loss | 1.0000 |
| 2:127564151:A:AG | acceptor_gain | 1.0000 |
| 2:127564151:AG:A | acceptor_gain | 1.0000 |
| 2:127564152:G:GA | acceptor_loss | 1.0000 |
| 2:127564152:G:GG | acceptor_gain | 1.0000 |
| 2:127564152:GG:G | acceptor_gain | 1.0000 |
| 2:127564152:GGGT:G | acceptor_gain | 1.0000 |
| 2:127564247:TTG:T | donor_gain | 1.0000 |
| 2:127565381:TCTAT:T | donor_gain | 1.0000 |
| 2:127565386:G:GG | donor_gain | 1.0000 |
| 2:127566641:A:AG | acceptor_gain | 1.0000 |
| 2:127566642:G:GA | acceptor_loss | 1.0000 |
| 2:127566642:G:GG | acceptor_gain | 1.0000 |
| 2:127566642:GA:G | acceptor_gain | 1.0000 |
| 2:127566642:GACA:G | acceptor_gain | 1.0000 |
| 2:127566642:GACAT:G | acceptor_gain | 1.0000 |
| 2:127566825:CAGG:C | donor_loss | 1.0000 |
| 2:127566827:GGTGA:G | donor_loss | 1.0000 |
| 2:127566828:G:GC | donor_loss | 1.0000 |
| 2:127569787:AGC:A | acceptor_gain | 1.0000 |
| 2:127569788:GCG:G | acceptor_gain | 1.0000 |
| 2:127569788:GCGGC:G | acceptor_gain | 1.0000 |
| 2:127569906:GGAGG:G | donor_gain | 1.0000 |
| 2:127569907:GAGG:G | donor_gain | 1.0000 |
| 2:127569907:GAGGG:G | donor_gain | 1.0000 |
| 2:127569909:GG:G | donor_gain | 1.0000 |
AlphaMissense
13927 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:127637335:T:C | L2090P | 0.996 |
| 2:127636855:T:C | F2064S | 0.995 |
| 2:127569892:G:C | A192P | 0.994 |
| 2:127636833:T:A | W2057R | 0.994 |
| 2:127636833:T:C | W2057R | 0.994 |
| 2:127584160:T:C | L461P | 0.993 |
| 2:127635167:T:A | W1895R | 0.993 |
| 2:127635167:T:C | W1895R | 0.993 |
| 2:127635734:T:G | Y1919D | 0.993 |
| 2:127636854:T:C | F2064L | 0.993 |
| 2:127636856:C:A | F2064L | 0.993 |
| 2:127636856:C:G | F2064L | 0.993 |
| 2:127636899:T:C | C2079R | 0.993 |
| 2:127565354:T:C | L85P | 0.992 |
| 2:127573964:T:C | F213L | 0.992 |
| 2:127573966:T:A | F213L | 0.992 |
| 2:127573966:T:G | F213L | 0.992 |
| 2:127635899:T:A | W1974R | 0.992 |
| 2:127635899:T:C | W1974R | 0.992 |
| 2:127636313:T:C | F2012L | 0.992 |
| 2:127636315:C:A | F2012L | 0.992 |
| 2:127636315:C:G | F2012L | 0.992 |
| 2:127636585:C:A | A2029D | 0.992 |
| 2:127637338:T:C | L2091P | 0.992 |
| 2:127569833:T:C | L172P | 0.991 |
| 2:127573958:A:C | S211R | 0.991 |
| 2:127573960:C:A | S211R | 0.991 |
| 2:127573960:C:G | S211R | 0.991 |
| 2:127582407:T:C | L435P | 0.991 |
| 2:127636302:G:A | G2008E | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000050044 (2:127633697 C>G,T), RS1000095118 (2:127580897 T>G), RS1000102926 (2:127609544 C>A), RS1000140348 (2:127589172 C>A,G,T), RS1000143450 (2:127548054 C>T), RS1000148182 (2:127621940 T>C), RS1000201050 (2:127561063 A>G), RS1000206427 (2:127541765 G>A), RS1000214682 (2:127630262 C>T), RS1000259020 (2:127557587 C>T), RS1000324853 (2:127583310 C>T), RS1000370883 (2:127563696 C>T), RS1000400801 (2:127604439 G>A), RS1000419729 (2:127551681 A>G), RS1000432307 (2:127569545 C>A,G,T)
Disease associations
OMIM: gene MIM:606541 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): neuromuscular disease (MONDO:0019056)
Orphanet (1): Neuromuscular disease (Orphanet:68381)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002686_4 | Protein C levels | 4.000000e-09 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004633 | protein C measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009468 | Neuromuscular Diseases | C10.668 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| benzo(e)pyrene | decreases methylation, increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | decreases expression | 1 |
| trametinib | decreases expression, affects cotreatment | 1 |
| NVP-BKM120 | decreases expression, affects cotreatment | 1 |
| Allergens | decreases expression | 1 |
| Arsenic | decreases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Folic Acid | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Methapyrilene | decreases methylation, increases methylation | 1 |
| Testosterone | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| Cyclosporine | increases methylation | 1 |
| Aflatoxin B1 | decreases methylation | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
198 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00331656 | PHASE4 | UNKNOWN | Comparative Study of Non-Invasive Mask Ventilation vs Cuirass Ventilation in Patients With Acute Respiratory Failure. |
| NCT00994552 | PHASE4 | UNKNOWN | Comparison of Pressure Support and Pressure Control Ventilation in Chronic Respiratory Failure |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00942227 | PHASE3 | COMPLETED | The Value of Traction in Treatment of Lumbar Radiculopathy |
| NCT00979108 | PHASE3 | COMPLETED | The Value of Traction in the Treatment of Cervical Radiculopathy |
| NCT01826487 | PHASE3 | COMPLETED | Phase 3 Study of Ataluren in Participants With Nonsense Mutation Duchenne Muscular Dystrophy (nmDMD) |
| NCT02090959 | PHASE3 | TERMINATED | An Extension Study of Ataluren (PTC124) in Participants With Nonsense Mutation Dystrophinopathy |
| NCT02436096 | PHASE3 | COMPLETED | A Study to Evaluate eFFIcacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With fibRoMyalgia |
| NCT02829814 | PHASE3 | TERMINATED | Repeat of: A Study to Evaluate Efficacy and Safety of Sublingual TNX-102 SL Tablet Taken at Bedtime in Patients With Fibromyalgia |
| NCT03179631 | PHASE3 | COMPLETED | Long-Term Outcomes of Ataluren in Duchenne Muscular Dystrophy |
| NCT05126758 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study of Deramiocel (CAP-1002) in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT05156320 | PHASE3 | COMPLETED | Efficacy and Safety of Apitegromab in Patients With Later-Onset Spinal Muscular Atrophy Treated With Nusinersen or Risdiplam |
| NCT05337553 | PHASE3 | ACTIVE_NOT_RECRUITING | A Study to Evaluate the Efficacy and Safety of Taldefgrobep Alfa in Participants With Spinal Muscular Atrophy |
| NCT05626855 | PHASE3 | ACTIVE_NOT_RECRUITING | Long-Term Safety & Efficacy of Apitegromab in Patients With SMA Who Completed Previous Trials of Apitegromab |
| NCT06672237 | PHASE3 | RECRUITING | A Phase 3 Study of NTLA-2001 in ATTRv-PN |
| NCT01074359 | PHASE2 | TERMINATED | Safety and Efficacy Study of A0001 in Patients With the A3243G Mitochondrial DNA Point Mutation |
| NCT01371149 | PHASE2 | COMPLETED | Patient -Ventilator Interaction in Chronic Respiratory Failure |
| NCT02022072 | PHASE2 | TERMINATED | Evaluation of Vital Capacity |
| NCT03127514 | PHASE2 | COMPLETED | AMX0035 in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT03406780 | PHASE2 | COMPLETED | A Study of CAP-1002 in Ambulatory and Non-Ambulatory Patients With Duchenne Muscular Dystrophy |
| NCT03921528 | PHASE2 | COMPLETED | An Active Treatment Study of SRK-015 in Patients With Type 2 or Type 3 Spinal Muscular Atrophy |
| NCT05479981 | PHASE2 | COMPLETED | Extension of AOC 1001-CS1 (MARINA) Study in Adult Myotonic Dystrophy Type 1 (DM1) Patients |
| NCT06339580 | PHASE2 | RECRUITING | Assessment of Volume-targeted Ventilation in Patients With Neuromuscular Disease |
| NCT07071935 | PHASE2 | NOT_YET_RECRUITING | A Clinical Trial of Early Ventilation in Amyotrophic Lateral Sclerosis (EVENT ALS) |
| NCT07287189 | PHASE2 | RECRUITING | Phase 2 Study of SAT-3247 in Pediatric Ambulatory Patients |
| NCT00252252 | PHASE1 | COMPLETED | AutoVPAP Versus VPAP; Assessment of Sleep and Ventilation |
| NCT01560741 | PHASE1 | UNKNOWN | Telemedicine and Ventilator Titration in Chronic Respiratory Patients Initiating Non-invasive Ventilation |
| NCT01621984 | PHASE1 | COMPLETED | Therapeutic Riding and Neuromuscular Disease |
| NCT01758510 | PHASE1 | COMPLETED | Safety Study of HLA-haplo Matched Allogenic Bone Marrow Derived Stem Cell Treatment in Amyotrophic Lateral Sclerosis |
| NCT03440034 | PHASE1 | COMPLETED | Study of Pioglitazone in Sporadic Inclusion Body Myositis |
| NCT05730842 | PHASE1 | COMPLETED | Absorption, Metabolism, Excretion and Absolute Bioavailability of EDG-5506 in Healthy Volunteers |
| NCT03272802 | PHASE2/PHASE3 | UNKNOWN | Treatment Effect of Edaravone in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT00860951 | PHASE1/PHASE2 | COMPLETED | P300 Brain Computer Interface Keyboard to Operate Assistive Technology |
| NCT02362425 | PHASE1/PHASE2 | COMPLETED | Antioxidant Therapy in RYR1-Related Congenital Myopathy |
| NCT00001201 | Not specified | COMPLETED | Evaluation of Neuromuscular Disease |
| NCT00002044 | Not specified | COMPLETED | A Pilot Study To Evaluate the Effect of Retrovir (Zidovudine: AZT) in the Treatment of Human Immunodeficiency Virus (HIV) Associated Dementia and Neuromuscular Diseases |
| NCT00004553 | Not specified | COMPLETED | Electromyography to Diagnose Neuromuscular Disorders |
| NCT00015470 | Not specified | COMPLETED | Diagnostic Evaluation of Patients With Neuromuscular Disease |
| NCT00017745 | Not specified | COMPLETED | Phenotype/Genotype Correlations in Neuromuscular Disorders |
| NCT00695591 | Not specified | COMPLETED | Home Sleep Testing in Neuromuscular Disease Patients |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): neuromuscular disease