MYOZ1
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Also known as FATZCS-2
Summary
MYOZ1 (myozenin 1, HGNC:13752) is a protein-coding gene on chromosome 10q22.2, encoding Myozenin-1 (Q9NP98). Myozenins may serve as intracellular binding proteins involved in linking Z-disk proteins such as alpha-actinin, gamma-filamin, TCAP/telethonin, LDB3/ZASP and localizing calcineurin signaling to the sarcomere.
The protein encoded by this gene is primarily expressed in the skeletal muscle, and belongs to the myozenin family. Members of this family function as calcineurin-interacting proteins that help tether calcineurin to the sarcomere of cardiac and skeletal muscle. They play an important role in modulation of calcineurin signaling.
Source: NCBI Gene 58529 — RefSeq curated summary.
At a glance
- GWAS associations: 12
- Clinical variants (ClinVar): 53 total
- MANE Select transcript:
NM_021245
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:13752 |
| Approved symbol | MYOZ1 |
| Name | myozenin 1 |
| Location | 10q22.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FATZ, CS-2 |
| Ensembl gene | ENSG00000177791 |
| Ensembl biotype | protein_coding |
| OMIM | 605603 |
| Entrez | 58529 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000359322, ENST00000966208, ENST00000966209
RefSeq mRNA: 1 — MANE Select: NM_021245
NM_021245
CCDS: CCDS7330
Canonical transcript exons
ENST00000359322 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001219081 | 73634484 | 73634733 |
| ENSE00001219094 | 73641411 | 73641474 |
| ENSE00001219097 | 73631612 | 73632161 |
| ENSE00001295530 | 73633900 | 73634065 |
| ENSE00001324670 | 73637744 | 73637922 |
| ENSE00001458867 | 73639945 | 73640035 |
Expression profiles
Bgee: expression breadth ubiquitous, 193 present calls, max score 99.84.
FANTOM5 (CAGE): breadth broad, TPM avg 11.5454 / max 3843.7310, expressed in 287 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 110088 | 8.6250 | 76 |
| 110089 | 2.2422 | 40 |
| 110090 | 0.6781 | 221 |
Top tissues by expression
283 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| hindlimb stylopod muscle | UBERON:0004252 | 99.84 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 99.81 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.80 | gold quality |
| biceps brachii | UBERON:0001507 | 99.76 | gold quality |
| quadriceps femoris | UBERON:0001377 | 99.74 | gold quality |
| vastus lateralis | UBERON:0001379 | 99.74 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 99.72 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 99.70 | gold quality |
| triceps brachii | UBERON:0001509 | 99.70 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.66 | gold quality |
| diaphragm | UBERON:0001103 | 99.58 | gold quality |
| deltoid | UBERON:0001476 | 99.52 | gold quality |
| tibialis anterior | UBERON:0001385 | 99.37 | gold quality |
| body of tongue | UBERON:0011876 | 99.03 | gold quality |
| muscle organ | UBERON:0001630 | 98.96 | gold quality |
| muscle of leg | UBERON:0001383 | 98.68 | gold quality |
| muscle tissue | UBERON:0002385 | 95.25 | gold quality |
| right coronary artery | UBERON:0001625 | 94.59 | gold quality |
| popliteal artery | UBERON:0002250 | 92.39 | gold quality |
| tibial artery | UBERON:0007610 | 92.38 | gold quality |
| tongue | UBERON:0001723 | 90.38 | gold quality |
| right atrium auricular region | UBERON:0006631 | 90.31 | gold quality |
| cardiac atrium | UBERON:0002081 | 89.27 | gold quality |
| left coronary artery | UBERON:0001626 | 88.60 | gold quality |
| aorta | UBERON:0000947 | 88.16 | gold quality |
| coronary artery | UBERON:0001621 | 87.94 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 86.05 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 85.86 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 84.67 | silver quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 84.56 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): MEF2C, NFATC4, NFKB1, NFKB
miRNA regulators (miRDB)
37 targeting MYOZ1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-519E-5P | 99.92 | 69.62 | 2358 |
| HSA-MIR-6892-3P | 99.68 | 66.40 | 1178 |
| HSA-MIR-587 | 99.64 | 70.86 | 2611 |
| HSA-MIR-642A-5P | 99.51 | 65.10 | 1152 |
| HSA-MIR-2392 | 99.43 | 67.50 | 708 |
| HSA-MIR-372-5P | 99.41 | 69.11 | 2299 |
| HSA-MIR-519D-5P | 99.41 | 69.30 | 2057 |
| HSA-MIR-452-3P | 99.01 | 66.25 | 1241 |
| HSA-MIR-1843 | 98.97 | 66.07 | 838 |
| HSA-MIR-4802-5P | 98.97 | 66.26 | 833 |
| HSA-MIR-6846-5P | 98.81 | 65.86 | 1121 |
| HSA-MIR-6848-5P | 98.81 | 65.49 | 1126 |
| HSA-MIR-4686 | 98.77 | 66.87 | 964 |
| HSA-MIR-4635 | 98.74 | 67.63 | 1339 |
| HSA-MIR-4710 | 98.61 | 65.96 | 1048 |
| HSA-MIR-767-3P | 98.61 | 67.69 | 1192 |
| HSA-MIR-3136-5P | 98.53 | 67.68 | 793 |
| HSA-MIR-4439 | 98.53 | 67.53 | 793 |
| HSA-MIR-6810-5P | 98.29 | 66.21 | 975 |
| HSA-MIR-1322 | 97.98 | 68.96 | 625 |
| HSA-MIR-943 | 97.81 | 64.42 | 694 |
| HSA-MIR-3921 | 97.81 | 67.45 | 1431 |
| HSA-MIR-6783-5P | 97.67 | 67.21 | 1528 |
| HSA-MIR-4456 | 97.50 | 64.88 | 1678 |
| HSA-MIR-7855-5P | 97.39 | 67.18 | 925 |
| HSA-MIR-4653-5P | 97.22 | 67.72 | 1429 |
| HSA-MIR-1243 | 97.07 | 65.44 | 719 |
| HSA-MIR-505-5P | 97.01 | 65.54 | 778 |
Literature-anchored findings (GeneRIF, showing 5)
- Our findings provide evidence for a novel connection between the Z-disc protein calsarcin-2 and the sarcolemma via filamins and beta1 integrins. (PMID:16076904)
- Mutations in PDLIM3 and MYOZ1, encoding myocyte Z line proteins, do not play any significant role in the genetic etiology of idiopathic DCM. (PMID:17254821)
- Mutations in MYOZ1 and MYOZ2 are at least very rare events as an underlying disease mechanism for idiopathic or familial DCM (PMID:17434779)
- A large number of variations were found in many of the genes (myozenin 1, gamma-filamin, kinectin-1) in patients with limb-girdle muscular dystrophies and controls. (PMID:19472918)
- Our results implicate MYOZ1 as the causative gene at the chromosome 10q22 locus for AF. (PMID:24177373)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | myoz1a | ENSDARG00000056209 |
| danio_rerio | myoz1b | ENSDARG00000071445 |
| mus_musculus | Myoz1 | ENSMUSG00000068697 |
| rattus_norvegicus | Myoz1 | ENSRNOG00000040122 |
Paralogs (2): MYOZ3 (ENSG00000164591), MYOZ2 (ENSG00000172399)
Protein
Protein identifiers
Myozenin-1 — Q9NP98 (reviewed: Q9NP98)
Alternative names: Calsarcin-2, Filamin-, actinin- and telethonin-binding protein, Protein FATZ
All UniProt accessions (1): Q9NP98
UniProt curated annotations — full annotation on UniProt →
Function. Myozenins may serve as intracellular binding proteins involved in linking Z-disk proteins such as alpha-actinin, gamma-filamin, TCAP/telethonin, LDB3/ZASP and localizing calcineurin signaling to the sarcomere. Plays an important role in the modulation of calcineurin signaling. May play a role in myofibrillogenesis.
Subunit / interactions. Interacts with ACTN2, ACTN3, FLNA, FLNB, FLNC, LDB3, PPP3CA and TCAP. Interacts via its C-terminal region with MYOT.
Subcellular location. Nucleus. Cell projection. Pseudopodium.
Tissue specificity. Expressed primarily in skeletal muscle. Detected at lower levels in heart, prostate and pancreas.
Similarity. Belongs to the myozenin family.
RefSeq proteins (1): NP_067068* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008438 | MYOZ | Family |
Pfam: PF05556
UniProt features (10 total): region of interest 2, compositionally biased region 2, sequence conflict 2, helix 2, chain 1, modified residue 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7A8T | X-RAY DIFFRACTION | 2.69 |
| 7ANK | X-RAY DIFFRACTION | 3.2 |
| 7A8U | X-RAY DIFFRACTION | 3.8 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NP98-F1 | 58.90 | 0.03 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 82
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 140 (showing top):
GOBP_MUSCLE_TISSUE_DEVELOPMENT, GOBP_SKELETAL_MUSCLE_TISSUE_REGENERATION, GOBP_REGULATION_OF_CALCIUM_MEDIATED_SIGNALING, GOBP_REGULATION_OF_WOUND_HEALING, GOBP_REGULATION_OF_DEVELOPMENTAL_GROWTH, GOBP_SKELETAL_MUSCLE_ADAPTATION, MAZ_Q6, GOBP_GROWTH, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_REGENERATION, GOBP_SARCOMERE_ORGANIZATION, AATGGAG_MIR136, CAGCTG_AP4_Q5, GOBP_NEGATIVE_REGULATION_OF_DEVELOPMENTAL_GROWTH, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION
GO Biological Process (8): negative regulation of transcription by RNA polymerase II (GO:0000122), skeletal muscle tissue development (GO:0007519), myofibril assembly (GO:0030239), wound healing (GO:0042060), negative regulation of skeletal muscle tissue regeneration (GO:0043417), skeletal muscle fiber adaptation (GO:0043503), sarcomere organization (GO:0045214), negative regulation of calcineurin-NFAT signaling cascade (GO:0070885)
GO Molecular Function (7): actin binding (GO:0003779), protein serine/threonine phosphatase inhibitor activity (GO:0004865), telethonin binding (GO:0031433), actinin binding (GO:0042805), FATZ binding (GO:0051373), molecular condensate scaffold activity (GO:0140693), protein binding (GO:0005515)
GO Cellular Component (5): nucleus (GO:0005634), actin cytoskeleton (GO:0015629), Z disc (GO:0030018), pseudopodium (GO:0031143), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoskeletal protein binding | 4 |
| actomyosin structure organization | 2 |
| cellular anatomical structure | 2 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| negative regulation of DNA-templated transcription | 1 |
| striated muscle tissue development | 1 |
| skeletal muscle organ development | 1 |
| cellular component assembly involved in morphogenesis | 1 |
| striated muscle cell development | 1 |
| supramolecular fiber organization | 1 |
| membraneless organelle assembly | 1 |
| response to wounding | 1 |
| tissue regeneration | 1 |
| skeletal muscle tissue regeneration | 1 |
| regulation of skeletal muscle tissue regeneration | 1 |
| negative regulation of developmental growth | 1 |
| negative regulation of wound healing | 1 |
| skeletal muscle adaptation | 1 |
| cellular response to stimulus | 1 |
| myofibril assembly | 1 |
| calcineurin-NFAT signaling cascade | 1 |
| regulation of calcineurin-NFAT signaling cascade | 1 |
| negative regulation of calcineurin-mediated signaling | 1 |
| protein serine/threonine phosphatase activity | 1 |
| protein phosphatase inhibitor activity | 1 |
| protein-macromolecule adaptor activity | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| cytoskeleton | 1 |
| I band | 1 |
| plasma membrane bounded cell projection | 1 |
Protein interactions and networks
STRING
1056 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| MYOZ1 | MYOT | Q9UBF9 | 978 |
| MYOZ1 | ACTN2 | P35609 | 961 |
| MYOZ1 | TCAP | O15273 | 958 |
| MYOZ1 | FLNC | Q14315 | 945 |
| MYOZ1 | LDB3 | O75112 | 899 |
| MYOZ1 | TTN | Q8WZ42 | 731 |
| MYOZ1 | MYPN | Q86TC9 | 720 |
| MYOZ1 | CALML6 | Q8TD86 | 715 |
| MYOZ1 | CALML3 | P27482 | 715 |
| MYOZ1 | CALML4 | Q96GE6 | 715 |
| MYOZ1 | CALML5 | Q9NZT1 | 715 |
| MYOZ1 | CALM1 | P02593 | 709 |
| MYOZ1 | ACTN1 | P12814 | 690 |
| MYOZ1 | SYNPO2L | Q9H987 | 677 |
| MYOZ1 | MYH7 | P12883 | 676 |
IntAct
236 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| FLNA | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| MYOZ1 | FLNA | psi-mi:“MI:0915”(physical association) | 0.720 |
| ACTN1 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| USHBP1 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYOZ1 | GOLGA6A | psi-mi:“MI:0915”(physical association) | 0.560 |
| ACTN3 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LZTS2 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PLEKHG4 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRIM23 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EXOSC8 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TRAF1 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT34 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CEP76 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PNMA1 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CRX | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| BAG4 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| VAC14 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| EIF3F | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYOZ1 | WASHC3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CEACAM6 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYOZ1 | WWOX | psi-mi:“MI:0915”(physical association) | 0.560 |
| LHX4 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYOZ1 | AKAP8L | psi-mi:“MI:0915”(physical association) | 0.560 |
| PFDN5 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT36 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| VBP1 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP12-2 | MYOZ1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (56): MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Reconstituted Complex), BRCA1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid), MYOZ1 (Two-hybrid)
ESM2 similar proteins: D3ZQL6, D4A702, E7F568, E9Q0S6, O35867, O54916, O54931, P19973, Q08495, Q08DM1, Q09YM8, Q1LVV0, Q2MJV9, Q3UH68, Q3UIL6, Q4KM62, Q4PS85, Q5NBX1, Q5R4B6, Q5RBH3, Q5RG44, Q5RHU7, Q5U301, Q68CZ2, Q6P4R8, Q6PIJ4, Q80Z38, Q8BWB1, Q8C5R2, Q8CC35, Q8IVT2, Q8K382, Q8N3V7, Q91YE8, Q96D71, Q9D067, Q9D279, Q9GLM4, Q9H987, Q9HBL0
Diamond homologs: Q4PS85, Q5E9V3, Q5R6I2, Q8R4E4, Q8SQ24, Q8TDC0, Q9JJW5, Q9JK37, Q9NP98, Q9NPC6
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 106 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ras activation upon Ca2+ influx through NMDA receptor | 5 | 39.6× | 1e-05 |
| Unblocking of NMDA receptors, glutamate binding and activation | 5 | 37.8× | 1e-05 |
| Negative regulation of NMDA receptor-mediated neuronal transmission | 5 | 37.8× | 1e-05 |
| Long-term potentiation | 5 | 33.0× | 2e-05 |
| Assembly and cell surface presentation of NMDA receptors | 9 | 31.7× | 1e-09 |
| Neurexins and neuroligins | 10 | 27.4× | 8e-10 |
| Protein-protein interactions at synapses | 6 | 22.1× | 2e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 8 | 46.5× | 3e-09 |
| protein localization to synapse | 6 | 46.0× | 6e-07 |
| receptor clustering | 7 | 43.7× | 6e-08 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 5 | 24.8× | 1e-04 |
| protein-containing complex assembly | 9 | 10.2× | 3e-05 |
| cell-cell adhesion | 9 | 9.1× | 7e-05 |
| protein localization to plasma membrane | 7 | 7.6× | 2e-03 |
| actin cytoskeleton organization | 8 | 6.3× | 2e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
53 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 45 |
| Likely benign | 6 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1058 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:73634074:C:CT | acceptor_gain | 1.0000 |
| 10:73634075:A:C | acceptor_gain | 1.0000 |
| 10:73637739:CTCA:C | donor_loss | 1.0000 |
| 10:73637740:TCA:T | donor_loss | 1.0000 |
| 10:73637741:CAC:C | donor_loss | 1.0000 |
| 10:73637742:ACCAT:A | donor_loss | 1.0000 |
| 10:73637920:CACCT:C | acceptor_gain | 1.0000 |
| 10:73637924:T:C | acceptor_gain | 1.0000 |
| 10:73637927:C:CT | acceptor_gain | 1.0000 |
| 10:73637928:A:T | acceptor_gain | 1.0000 |
| 10:73637935:C:CT | acceptor_gain | 1.0000 |
| 10:73637936:A:T | acceptor_gain | 1.0000 |
| 10:73632158:CGTC:C | acceptor_gain | 0.9900 |
| 10:73632160:TCCT:T | acceptor_loss | 0.9900 |
| 10:73632161:CCTG:C | acceptor_loss | 0.9900 |
| 10:73632162:C:CC | acceptor_gain | 0.9900 |
| 10:73632162:C:CG | acceptor_loss | 0.9900 |
| 10:73632163:T:A | acceptor_loss | 0.9900 |
| 10:73633915:T:C | donor_gain | 0.9900 |
| 10:73634073:CCA:C | acceptor_gain | 0.9900 |
| 10:73634074:C:T | acceptor_gain | 0.9900 |
| 10:73634075:A:AC | acceptor_gain | 0.9900 |
| 10:73634075:A:T | acceptor_gain | 0.9900 |
| 10:73634549:C:CT | donor_gain | 0.9900 |
| 10:73634607:A:AC | donor_gain | 0.9900 |
| 10:73634608:C:CC | donor_gain | 0.9900 |
| 10:73634633:G:A | donor_gain | 0.9900 |
| 10:73637738:ACT:A | donor_loss | 0.9900 |
| 10:73637742:A:AC | donor_gain | 0.9900 |
| 10:73637743:C:CC | donor_gain | 0.9900 |
AlphaMissense
1938 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:73634006:A:G | W188R | 0.999 |
| 10:73634006:A:T | W188R | 0.999 |
| 10:73637786:A:C | F70L | 0.999 |
| 10:73637786:A:T | F70L | 0.999 |
| 10:73637788:A:G | F70L | 0.999 |
| 10:73637798:C:A | R66S | 0.999 |
| 10:73637798:C:G | R66S | 0.999 |
| 10:73637808:C:G | R63P | 0.999 |
| 10:73637809:G:C | R63G | 0.999 |
| 10:73637816:G:C | F60L | 0.999 |
| 10:73637816:G:T | F60L | 0.999 |
| 10:73637818:A:G | F60L | 0.999 |
| 10:73637850:A:G | L49P | 0.999 |
| 10:73632007:A:G | W275R | 0.998 |
| 10:73632007:A:T | W275R | 0.998 |
| 10:73633905:G:C | F221L | 0.998 |
| 10:73633905:G:T | F221L | 0.998 |
| 10:73633907:A:G | F221L | 0.998 |
| 10:73634004:C:A | W188C | 0.998 |
| 10:73634004:C:G | W188C | 0.998 |
| 10:73637787:A:G | F70S | 0.998 |
| 10:73637799:C:A | R66M | 0.998 |
| 10:73637799:C:G | R66T | 0.998 |
| 10:73637817:A:G | F60S | 0.998 |
| 10:73637827:A:G | S57P | 0.998 |
| 10:73637829:C:T | G56D | 0.998 |
| 10:73637830:C:G | G56R | 0.998 |
| 10:73637853:T:A | E48V | 0.998 |
| 10:73637856:T:A | E47V | 0.998 |
| 10:73632026:G:C | F268L | 0.997 |
dbSNP variants (sampled 300 via entrez): RS1000417812 (10:73636812 T>TA), RS1000491460 (10:73636476 A>G), RS1000754434 (10:73638579 C>A), RS1000982549 (10:73631426 G>A), RS1001544135 (10:73634334 A>C,G), RS1001869546 (10:73633176 A>C,G), RS1001931003 (10:73634582 A>G), RS1002160891 (10:73631689 G>A), RS1002295999 (10:73632941 A>G), RS1002371672 (10:73639208 C>A,T), RS1002706846 (10:73638156 A>C,G), RS1003230190 (10:73640544 AG>A), RS1004154581 (10:73642625 T>C), RS1004228734 (10:73642832 G>A), RS1004381686 (10:73636361 G>A,T)
Disease associations
OMIM: gene MIM:605603 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
12 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006414_1 | Atrial fibrillation | 9.000000e-35 |
| GCST010796_1565 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-27 |
| GCST010796_1566 | Electrocardiogram morphology (amplitude at temporal datapoints) | 9.000000e-12 |
| GCST010796_1567 | Electrocardiogram morphology (amplitude at temporal datapoints) | 3.000000e-14 |
| GCST010796_1568 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-17 |
| GCST010796_1569 | Electrocardiogram morphology (amplitude at temporal datapoints) | 5.000000e-19 |
| GCST010796_1570 | Electrocardiogram morphology (amplitude at temporal datapoints) | 6.000000e-20 |
| GCST010796_1571 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-20 |
| GCST010796_1572 | Electrocardiogram morphology (amplitude at temporal datapoints) | 7.000000e-22 |
| GCST010796_1573 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-22 |
| GCST010796_1574 | Electrocardiogram morphology (amplitude at temporal datapoints) | 2.000000e-23 |
| GCST010796_1575 | Electrocardiogram morphology (amplitude at temporal datapoints) | 8.000000e-25 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004327 | electrocardiography |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
21 total (human), top 21 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 2 |
| Valproic Acid | affects cotreatment, decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| terbufos | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases expression, affects response to substance, increases expression, affects cotreatment | 1 |
| pentanal | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| bisphenol S | decreases methylation | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Fonofos | increases methylation | 1 |
| Endosulfan | decreases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Lipopolysaccharides | decreases expression, affects response to substance, increases expression, affects cotreatment | 1 |
| Parathion | increases methylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Triclosan | decreases expression | 1 |
| Aflatoxin B1 | increases methylation | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): atrial fibrillation