NANOS2
geneOn this page
Also known as NOS2
Summary
NANOS2 (nanos C2HC-type zinc finger 2, HGNC:23292) is a protein-coding gene on chromosome 19q13.32, encoding Nanos homolog 2 (P60321). Plays a key role in the sexual differentiation of germ cells by promoting the male fate but suppressing the female fate.
Enables enzyme activator activity. Involved in mRNA destabilization and negative regulation of translation. Located in nucleus and perinuclear region of cytoplasm.
Source: NCBI Gene 339345 — RefSeq curated summary.
At a glance
- Gene–disease (curated): schizophrenia (No Known Disease Relationship, GenCC)
- GWAS associations: 19
- Clinical variants (ClinVar): 239 total
- MANE Select transcript:
NM_001029861
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:23292 |
| Approved symbol | NANOS2 |
| Name | nanos C2HC-type zinc finger 2 |
| Location | 19q13.32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | NOS2 |
| Ensembl gene | ENSG00000188425 |
| Ensembl biotype | protein_coding |
| OMIM | 608228 |
| Entrez | 339345 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000341294
RefSeq mRNA: 1 — MANE Select: NM_001029861
NM_001029861
CCDS: CCDS33056
Canonical transcript exons
ENST00000341294 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001374579 | 45913214 | 45914778 |
Expression profiles
Bgee: expression breadth broad, 32 present calls, max score 80.69.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0056 / max 2.8991, expressed in 3 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 181589 | 0.0056 | 3 |
Top tissues by expression
236 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 80.69 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 75.78 | gold quality |
| right testis | UBERON:0004534 | 61.98 | gold quality |
| left testis | UBERON:0004533 | 61.27 | gold quality |
| testis | UBERON:0000473 | 60.93 | gold quality |
| amniotic fluid | UBERON:0000173 | 46.25 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 43.37 | gold quality |
| secondary oocyte | CL:0000655 | 42.57 | gold quality |
| vastus lateralis | UBERON:0001379 | 41.41 | gold quality |
| quadriceps femoris | UBERON:0001377 | 41.37 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 41.37 | gold quality |
| superficial temporal artery | UBERON:0001614 | 41.33 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 41.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 40.98 | gold quality |
| jejunal mucosa | UBERON:0000399 | 40.59 | gold quality |
| biceps brachii | UBERON:0001507 | 40.57 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 40.45 | gold quality |
| myocardium | UBERON:0002349 | 40.45 | gold quality |
| gingival epithelium | UBERON:0001949 | 40.43 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 40.33 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 40.29 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 40.27 | gold quality |
| jejunum | UBERON:0002115 | 40.18 | gold quality |
| cortical plate | UBERON:0005343 | 40.16 | gold quality |
| cartilage tissue | UBERON:0002418 | 40.06 | gold quality |
| oviduct epithelium | UBERON:0004804 | 40.03 | gold quality |
| mammary duct | UBERON:0001765 | 39.98 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 39.95 | gold quality |
| deltoid | UBERON:0001476 | 39.83 | gold quality |
| saphenous vein | UBERON:0007318 | 39.83 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.28 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
32 targeting NANOS2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6077 | 99.99 | 68.04 | 2299 |
| HSA-MIR-6768-5P | 99.92 | 67.36 | 1942 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-6766-5P | 99.68 | 67.70 | 2325 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-12123 | 99.52 | 71.79 | 2990 |
| HSA-MIR-766-5P | 99.47 | 67.91 | 2225 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-1275 | 99.47 | 67.90 | 2749 |
| HSA-MIR-942-5P | 99.41 | 68.40 | 1977 |
| HSA-MIR-7109-5P | 99.18 | 66.13 | 1057 |
| HSA-MIR-4478 | 99.07 | 65.16 | 2320 |
| HSA-MIR-5001-5P | 99.05 | 66.76 | 1972 |
| HSA-MIR-4724-5P | 98.87 | 67.75 | 1324 |
| HSA-MIR-6829-5P | 98.86 | 65.12 | 1480 |
| HSA-MIR-4656 | 98.79 | 66.22 | 1306 |
| HSA-MIR-4635 | 98.74 | 67.63 | 1339 |
| HSA-MIR-210-5P | 98.57 | 64.37 | 832 |
| HSA-MIR-4290 | 98.51 | 65.17 | 907 |
| HSA-MIR-4483 | 98.09 | 64.12 | 1642 |
| HSA-MIR-637 | 97.91 | 64.05 | 1517 |
| HSA-MIR-10397-5P | 97.31 | 69.06 | 710 |
| HSA-MIR-152-5P | 96.42 | 66.59 | 960 |
| HSA-MIR-4749-3P | 96.40 | 66.24 | 798 |
| HSA-MIR-6805-5P | 95.79 | 64.86 | 670 |
| HSA-MIR-1256 | 95.44 | 66.33 | 784 |
| HSA-MIR-3131 | 95.33 | 65.74 | 102 |
Literature-anchored findings (GeneRIF, showing 4)
- The increased NO production with increased expression of iNOS and ncNOS may contribute to the pathological and physiological features of UVB-induced erythema and skin inflammation. (PMID:14615895)
- Data describe for the first time the expression pattern of the NANOS2 gene in human tissues and show that it is testis specific. We found that NANOS2 protein is present in prenatal germ cells and at later stages in spermatogenesis. (PMID:19168545)
- We conclude that heterogeneous population of the HEK293T cells might be easily shifted towards expression of the pluripotency markers by ectopic expression of the SON factors or by growth in serum depleted media. (PMID:27794480)
- A cooperative mechanism of target RNA selection via germ-cell-specific RNA-binding proteins NANOS2 and DND1. (PMID:35705038)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | nanos2 | ENSDARG00000116802 |
| mus_musculus | Nanos2 | ENSMUSG00000051965 |
| rattus_norvegicus | Nanos2 | ENSRNOG00000074804 |
| drosophila_melanogaster | nanos | FBGN0002962 |
| caenorhabditis_elegans | WBGENE00003783 | |
| caenorhabditis_elegans | WBGENE00003784 |
Paralogs (2): NANOS3 (ENSG00000187556), NANOS1 (ENSG00000188613)
Protein
Protein identifiers
Nanos homolog 2 — P60321 (reviewed: P60321)
All UniProt accessions (1): P60321
UniProt curated annotations — full annotation on UniProt →
Function. Plays a key role in the sexual differentiation of germ cells by promoting the male fate but suppressing the female fate. Represses the female fate pathways by suppressing meiosis, which in turn results in the promotion of the male fate. Maintains the suppression of meiosis by preventing STRA8 expression, which is required for premeiotic DNA replication, after CYP26B1 is decreased. Regulates the localization of the CCR4-NOT deadenylation complex to P-bodies and plays a role in recruiting the complex to trigger the degradation of mRNAs involved in meiosis. Required for the maintenance of the spermatogonial stem cell population. Not essential for the assembly of P-bodies but is required for the maintenance of their normal state.
Subunit / interactions. Interacts with CNOT1, CNOT3, CNOT6L, CNOT7 and CNOT9.
Subcellular location. Cytoplasm. P-body. Perinuclear region.
Tissue specificity. Testis and ovary. Expression found in several spermatogenic stages: in cells on the periphery of the tubules which could correspond to spermatogonia, in spermatocytes and in round spermatids (at protein level).
Domain organisation. The Nanos-type zinc finger is composed of two C2HC motifs, each motif binding one molecule of zinc. It is essential for the translation repression activity of the protein.
Similarity. Belongs to the nanos family.
RefSeq proteins (1): NP_001025032* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR008705 | Nanos/Xcar2 | Family |
| IPR024161 | Znf_nanos-typ | Domain |
| IPR038129 | Nanos_sf | Homologous_superfamily |
Pfam: PF05741
UniProt features (14 total): binding site 8, short sequence motif 2, chain 1, zinc finger region 1, sequence variant 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P60321-F1 | 76.58 | 0.34 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 101; 109; 114; 63; 66; 79; 90; 98
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 415 (showing top):
GOBP_CIRCADIAN_RHYTHM, GOBP_NEGATIVE_REGULATION_OF_REPRODUCTIVE_PROCESS, LEE_NEURAL_CREST_STEM_CELL_DN, MORF_FLT1, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_REGULATION_OF_BLOOD_PRESSURE, MORF_MSH3, GOBP_CIRCULATORY_SYSTEM_PROCESS, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_REGULATION_OF_MRNA_CATABOLIC_PROCESS, GOBP_REGULATION_OF_NUCLEAR_DIVISION, GOBP_INFLAMMATORY_RESPONSE, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_POSITIVE_REGULATION_OF_INTERLEUKIN_8_PRODUCTION, GOBP_RESPONSE_TO_PEPTIDE
GO Biological Process (9): mRNA catabolic process (GO:0006402), spermatogenesis (GO:0007283), negative regulation of translation (GO:0017148), germ-line stem cell population maintenance (GO:0030718), negative regulation of meiotic nuclear division (GO:0045835), oogenesis (GO:0048477), mRNA destabilization (GO:0061157), regulation of translation (GO:0006417), cell differentiation (GO:0030154)
GO Molecular Function (6): mRNA binding (GO:0003729), enzyme activator activity (GO:0008047), zinc ion binding (GO:0008270), RNA binding (GO:0003723), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (4): P-body (GO:0000932), nucleus (GO:0005634), cytoplasm (GO:0005737), perinuclear region of cytoplasm (GO:0048471)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| negative regulation of gene expression | 3 |
| translation | 2 |
| cellular anatomical structure | 2 |
| RNA catabolic process | 1 |
| mRNA metabolic process | 1 |
| developmental process involved in reproduction | 1 |
| male gamete generation | 1 |
| regulation of translation | 1 |
| negative regulation of protein metabolic process | 1 |
| stem cell population maintenance | 1 |
| negative regulation of cell cycle process | 1 |
| regulation of meiotic nuclear division | 1 |
| negative regulation of meiotic cell cycle | 1 |
| negative regulation of nuclear division | 1 |
| meiotic nuclear division | 1 |
| germ cell development | 1 |
| female gamete generation | 1 |
| regulation of mRNA stability | 1 |
| RNA destabilization | 1 |
| positive regulation of mRNA catabolic process | 1 |
| post-transcriptional regulation of gene expression | 1 |
| regulation of protein metabolic process | 1 |
| cellular developmental process | 1 |
| RNA binding | 1 |
| catalytic activity | 1 |
| enzyme regulator activity | 1 |
| molecular function activator activity | 1 |
| transition metal ion binding | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| cation binding | 1 |
| cytoplasmic ribonucleoprotein granule | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
918 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NANOS2 | STRA8 | Q7Z7C7 | 959 |
| NANOS2 | CYP26B1 | Q9NR63 | 956 |
| NANOS2 | CNOT1 | A5YKK6 | 863 |
| NANOS2 | ZBTB16 | Q05516 | 769 |
| NANOS2 | DND1 | Q8IYX4 | 767 |
| NANOS2 | SYCP3 | Q8IZU3 | 748 |
| NANOS2 | DAZL | Q92904 | 745 |
| NANOS2 | GFRA1 | P56159 | 731 |
| NANOS2 | SOHLH1 | Q5JUK2 | 687 |
| NANOS2 | SOHLH2 | Q9NX45 | 684 |
| NANOS2 | DMRT1 | Q9Y5R6 | 659 |
| NANOS2 | NEUROG3 | Q9Y4Z2 | 619 |
| NANOS2 | BCL6B | Q8N143 | 618 |
| NANOS2 | ID4 | P47928 | 611 |
| NANOS2 | DDX4 | Q9NQI0 | 609 |
IntAct
19 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NANOS2 | MAGEA12 | psi-mi:“MI:0915”(physical association) | 0.780 |
| MAGEA12 | NANOS2 | psi-mi:“MI:0915”(physical association) | 0.780 |
| CCNDBP1 | NANOS2 | psi-mi:“MI:0915”(physical association) | 0.670 |
| NANOS2 | CCNDBP1 | psi-mi:“MI:0915”(physical association) | 0.670 |
| NANOS2 | S100A10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| Prdm16 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| NANOS2 | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| NANOS2 | MAGEA12 | psi-mi:“MI:0915”(physical association) | 0.000 |
| NANOS2 | S100A10 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (48): NANOS2 (Two-hybrid), NANOS2 (Two-hybrid), CNOT1 (Affinity Capture-Western), CNOT3 (Affinity Capture-Western), CNOT1 (Reconstituted Complex), CNOT6 (Affinity Capture-MS), CNOT6L (Affinity Capture-MS), CNOT2 (Affinity Capture-MS), TOB2 (Affinity Capture-MS), TNKS1BP1 (Affinity Capture-MS), BTG3 (Affinity Capture-MS), CNOT11 (Affinity Capture-MS), CNOT10 (Affinity Capture-MS), CNOT3 (Affinity Capture-MS), MINK1 (Affinity Capture-MS)
ESM2 similar proteins: A0A1L8HJK9, A9LMC0, B2RVL6, B5DEH0, C3VD30, G5E5X0, O43900, O54880, O95343, P0DH66, P46686, P56163, P58269, P60321, P60322, P60323, P60324, Q07937, Q29RJ0, Q2PFD7, Q38740, Q3UPF5, Q58D79, Q5TKR9, Q5XIX0, Q61103, Q62233, Q6Y2X3, Q705F3, Q768S4, Q7Z2W4, Q80U38, Q8BZ21, Q8CCG1, Q8HXK7, Q8K3Y6, Q8N2G6, Q90WW1, Q90ZZ5, Q90ZZ6
Diamond homologs: E7FDB3, P25724, P60321, P60322, P60323, P60324, Q07937, Q80WY3, Q8WY41, Q90WW1, Q90ZZ5, Q90ZZ6
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| “CCR4-NOT complex” | “down-regulates quantity by repression” | NANOS2 | “post transcriptional regulation” |
| NEDD4 | “down-regulates quantity by destabilization” | NANOS2 | ubiquitination |
| “Elongin E3-Cul-5” | “down-regulates quantity by destabilization” | NANOS2 | polyubiquitination |
| SPSB2 | “down-regulates quantity by destabilization” | NANOS2 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
239 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 167 |
| Likely benign | 42 |
| Benign | 20 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3933 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:27758876:TATA:T | donor_loss | 1.0000 |
| 17:27758878:TA:T | donor_loss | 1.0000 |
| 17:27758879:A:AG | donor_loss | 1.0000 |
| 17:27758880:CCT:C | donor_loss | 1.0000 |
| 17:27759071:TAGAC:T | acceptor_gain | 1.0000 |
| 17:27759072:AGAC:A | acceptor_gain | 1.0000 |
| 17:27759073:GAC:G | acceptor_gain | 1.0000 |
| 17:27759074:AC:A | acceptor_gain | 1.0000 |
| 17:27759075:CC:C | acceptor_gain | 1.0000 |
| 17:27759076:C:CC | acceptor_gain | 1.0000 |
| 17:27759076:C:CG | acceptor_loss | 1.0000 |
| 17:27759076:C:T | acceptor_gain | 1.0000 |
| 17:27759083:C:CT | acceptor_gain | 1.0000 |
| 17:27759083:C:T | acceptor_gain | 1.0000 |
| 17:27760025:TTTAC:T | donor_loss | 1.0000 |
| 17:27760028:A:AT | donor_loss | 1.0000 |
| 17:27760029:CCT:C | donor_loss | 1.0000 |
| 17:27760175:ACTCC:A | acceptor_loss | 1.0000 |
| 17:27760176:CTC:C | acceptor_gain | 1.0000 |
| 17:27760618:CTTA:C | donor_loss | 1.0000 |
| 17:27760620:TAC:T | donor_loss | 1.0000 |
| 17:27760621:A:AT | donor_loss | 1.0000 |
| 17:27760621:AC:A | donor_gain | 1.0000 |
| 17:27760622:C:A | donor_loss | 1.0000 |
| 17:27760622:CC:C | donor_gain | 1.0000 |
| 17:27760745:C:CC | acceptor_gain | 1.0000 |
| 17:27761138:GCTTA:G | donor_loss | 1.0000 |
| 17:27761139:CTTA:C | donor_loss | 1.0000 |
| 17:27761140:TTA:T | donor_loss | 1.0000 |
| 17:27761141:TA:T | donor_loss | 1.0000 |
AlphaMissense
890 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 19:45914426:A:G | C90R | 0.999 |
| 19:45914402:A:G | C98R | 0.998 |
| 19:45914500:A:G | F65S | 0.998 |
| 19:45914367:A:C | H109Q | 0.997 |
| 19:45914367:A:T | H109Q | 0.997 |
| 19:45914369:G:C | H109D | 0.997 |
| 19:45914416:A:G | L93P | 0.997 |
| 19:45914416:A:T | L93Q | 0.997 |
| 19:45914425:C:G | C90S | 0.997 |
| 19:45914426:A:T | C90S | 0.997 |
| 19:45914459:G:C | H79D | 0.997 |
| 19:45914497:C:G | C66S | 0.997 |
| 19:45914498:A:T | C66S | 0.997 |
| 19:45914499:G:C | F65L | 0.997 |
| 19:45914499:G:T | F65L | 0.997 |
| 19:45914500:A:C | F65C | 0.997 |
| 19:45914501:A:G | F65L | 0.997 |
| 19:45914392:C:G | C101S | 0.996 |
| 19:45914393:A:G | C101R | 0.996 |
| 19:45914393:A:T | C101S | 0.996 |
| 19:45914424:A:C | C90W | 0.996 |
| 19:45914425:C:T | C90Y | 0.996 |
| 19:45914457:G:C | H79Q | 0.996 |
| 19:45914457:G:T | H79Q | 0.996 |
| 19:45914493:C:A | K67N | 0.996 |
| 19:45914493:C:G | K67N | 0.996 |
| 19:45914497:C:T | C66Y | 0.996 |
| 19:45914506:C:G | C63S | 0.996 |
| 19:45914507:A:T | C63S | 0.996 |
| 19:45914371:G:T | A108D | 0.995 |
dbSNP variants (sampled 300 via entrez): RS1000051163 (19:45914120 G>A), RS1000550431 (19:45916193 G>A,T), RS1002045025 (19:45916134 G>A), RS1002811369 (19:45916378 T>A), RS1002863521 (19:45913057 T>G), RS1003161437 (19:45913315 T>C,G), RS1004110482 (19:45915752 A>G), RS1004529023 (19:45915464 T>G), RS1005006938 (19:45916332 G>A), RS1005362849 (19:45916116 TG>T), RS1005679394 (19:45913499 A>C,G), RS1006579789 (19:45913417 T>C,G), RS1006686952 (19:45916672 G>A), RS1007612106 (19:45915127 G>A), RS1009752979 (19:45915084 C>A,T)
Disease associations
OMIM: gene MIM:608228 | disease phenotypes: MIM:611162
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| schizophrenia | No Known Disease Relationship | Unknown |
Mondo (2): malaria, susceptibility to (MONDO:0021024), schizophrenia (MONDO:0005090)
Orphanet (1): Malaria (Orphanet:673)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
19 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000834_6 | Psoriasis | 4.000000e-11 |
| GCST001729_22 | Crohn’s disease | 9.000000e-17 |
| GCST002304_14 | Fractional exhaled nitric oxide (childhood) | 3.000000e-07 |
| GCST002304_20 | Fractional exhaled nitric oxide (childhood) | 1.000000e-09 |
| GCST002740_55 | Inflammatory skin disease | 6.000000e-12 |
| GCST002874_12 | Psoriasis | 6.000000e-10 |
| GCST002874_50 | Psoriasis | 3.000000e-06 |
| GCST003268_24 | Psoriasis vulgaris | 3.000000e-13 |
| GCST003269_10 | Cutaneous psoriasis | 8.000000e-06 |
| GCST003270_12 | Psoriatic arthritis | 4.000000e-06 |
| GCST005527_18 | Psoriasis | 3.000000e-16 |
| GCST005529_31 | Ankylosing spondylitis | 6.000000e-07 |
| GCST005529_4 | Ankylosing spondylitis | 1.000000e-10 |
| GCST005529_61 | Ankylosing spondylitis | 1.000000e-08 |
| GCST005537_27 | Chronic inflammatory diseases (ankylosing spondylitis, Crohn’s disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy) | 7.000000e-12 |
| GCST005537_28 | Chronic inflammatory diseases (ankylosing spondylitis, Crohn’s disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy) | 1.000000e-10 |
| GCST007844_9 | Ankylosing spondylitis | 1.000000e-06 |
| GCST009798_38 | Asthma | 2.000000e-10 |
| GCST010481_4 | Acute anterior uveitis in ankylosing spondylitis | 8.000000e-07 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005536 | nitric oxide exhalation measurement |
| EFO:1001494 | psoriasis vulgaris |
| EFO:0007773 | cutaneous psoriasis measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
7 total (human), top 7 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| testosterone-3-carboxymethyloxime-bovine serum albumin conjugate | increases expression | 1 |
| bisphenol S | affects cotreatment, decreases methylation | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, decreases methylation | 1 |
| Benzo(a)pyrene | affects methylation, increases methylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00000374 | PHASE4 | COMPLETED | Treatment for First-Episode Schizophrenia |
| NCT00001656 | PHASE4 | COMPLETED | Comparison of Clozapine vs Olanzapine in Childhood-Onset Psychotic Disorders |
| NCT00007774 | PHASE4 | COMPLETED | To Determine if Olanzapine is More Cost Effective Than Haloperidol for the Treatment of Schizophrenia |
| NCT00014001 | PHASE4 | COMPLETED | CATIE- Schizophrenia Trial |
| NCT00018668 | PHASE4 | COMPLETED | Antipsychotic Response in Schizophrenia |
| NCT00034801 | PHASE4 | COMPLETED | Olanzapine Versus Active Comparator in the Treatment of Depression in Patients With Schizophrenia |
| NCT00034905 | PHASE4 | COMPLETED | A Comparison of Seroquel vs. Risperidone in Schizophrenia |
| NCT00036088 | PHASE4 | COMPLETED | Olanzapine Versus An Active Comparator in the Treatment of Schizophrenia |
| NCT00044187 | PHASE4 | COMPLETED | The Assessment of a Weight-Gain Agent for the Treatment of Olanzapine-Associated Anti-Obesity Agent in Patients With Schizophrenia, Schizophreniform Disorder, Schizoaffective Disorder, and Bipolar I Disorder |
| NCT00044655 | PHASE4 | COMPLETED | Switching Medication to Treat Schizophrenia |
| NCT00048828 | PHASE4 | COMPLETED | Treating Drug-Resistant Childhood Schizophrenia |
| NCT00053703 | PHASE4 | COMPLETED | Treatment of Early Onset Schizophrenia Spectrum Disorders (TEOSS) |
| NCT00056498 | PHASE4 | COMPLETED | Risperidone Treatment in Schizophrenia Patients Who Are Currently Taking Clozapine |
| NCT00061802 | PHASE4 | COMPLETED | Efficacy and Safety of Two Atypical Antipsychotics vs. Placebo in Patients With an Acute Exacerbation of Either Schizophrenia or Schizoaffective Disorder |
| NCT00080327 | PHASE4 | COMPLETED | Study of Three Doses of Aripiprazole in Patients With Acute Schizophrenia |
| NCT00088049 | PHASE4 | COMPLETED | Study of Olanzapine vs. Aripiprazole in the Treatment of Schizophrenia |
| NCT00090012 | PHASE4 | COMPLETED | Comparison of Continuing Olanzapine to Switching to Quetiapine in Overweight or Obese Patients With Schizophrenia and Schizoaffective Disorder |
| NCT00100776 | PHASE4 | COMPLETED | Efficacy of High Dose Olanzapine for the Treatment of Schizophrenia and Schizoaffective Disorder |
| NCT00103571 | PHASE4 | COMPLETED | Olanzapine Versus Aripiprazole in the Treatment of Acutely Ill Patients With Schizophrenia |
| NCT00108368 | PHASE4 | COMPLETED | The Effects of Risperidone and Olanzapine on Thinking |
| NCT00114595 | PHASE4 | COMPLETED | Ethyl-Eicosapentaenoic Acid and Tardive Dyskinesia |
| NCT00130923 | PHASE4 | COMPLETED | Risperidone Long-acting Versus Oral Risperidone in Patients With Schizophrenia and Alcohol Use Disorder |
| NCT00137020 | PHASE4 | COMPLETED | Clinical Effect Of Cross Titration Of Antipsychotics With Ziprasidone In Schizophrenia Or Schizoaffective Disorder |
| NCT00140166 | PHASE4 | COMPLETED | Treatment of Acute Schizophrenia With Vitamin Therapy |
| NCT00145847 | PHASE4 | COMPLETED | Naltrexone Treatment of Alcohol Abuse in Schizophrenia |
| NCT00148564 | PHASE4 | COMPLETED | Energy Homeostasis Under Treatment With Atypical Antipsychotics |
| NCT00156715 | PHASE4 | COMPLETED | Efficacy of Quetiapine in the Treatment of Patients With Schizophrenia and a Comorbid Substance Use Disorder |
| NCT00158223 | PHASE4 | COMPLETED | Effectiveness of Pimozide in Augmenting the Effects of Clozapine in the Treatment of Schizophrenia |
| NCT00159081 | PHASE4 | COMPLETED | One Year Drug Treatment in First-Episode Schizophrenia |
| NCT00159120 | PHASE4 | COMPLETED | Maintenance Treatment vs. Stepwise Drug Discontinuation in First-Episode Schizophrenia |
| NCT00159133 | PHASE4 | COMPLETED | Prodrome-Based Early Intervention With Antipsychotics vs. Benzodiazepines in First-Episode Schizophrenia |
| NCT00159757 | PHASE4 | TERMINATED | 12 Week Open, Non-Comparative Switch Study Of Oral Ziprazidone In Previously Treated Schizophrenic Patients |
| NCT00167817 | PHASE4 | COMPLETED | Effect of Switch to Aripiprazole on Health and Smoking Parameters in Patients With Schizophrenia: A Pilot Study |
| NCT00169026 | PHASE4 | TERMINATED | Alcoholism and Schizophrenia: Effects of Clozapine |
| NCT00169039 | PHASE4 | TERMINATED | Clozapine Versus Chlorpromazine for Treatment-Unresponsive Schizophrenia |
| NCT00169065 | PHASE4 | COMPLETED | Effectiveness of Clozapine Versus Olanzapine for Treatment-resistant Schizophrenia |
| NCT00169091 | PHASE4 | TERMINATED | Clozapine Versus Haloperidol for Treating the First Episode of Schizophrenia |
| NCT00176423 | PHASE4 | COMPLETED | Efficacy Study of Galantamine for Cognitive Impairments in Schizophrenia |
| NCT00176436 | PHASE4 | COMPLETED | Atomoxetine for Treatment of Weight Gain in Olanzapine or Clozapine Patients |
| NCT00177008 | PHASE4 | COMPLETED | Aripiprazole for the Treatment of Schizophrenia With Co-Morbid Social Anxiety |
Related Atlas pages
- Associated diseases: schizophrenia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): anterior uveitis, malaria, susceptibility to, psoriatic arthritis