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NAPEPLD

gene
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Also known as FMP30C7orf18NAPE-PLD

Summary

NAPEPLD (N-acyl phosphatidylethanolamine phospholipase D, HGNC:21683) is a protein-coding gene on chromosome 7q22.1, encoding N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D (Q6IQ20). D-type phospholipase that hydrolyzes N-acyl-phosphatidylethanolamines (NAPEs) to produce bioactive N-acylethanolamines/fatty acid ethanolamides (NAEs/FAEs) and phosphatidic acid.

NAPEPLD is a phospholipase D type enzyme that catalyzes the release of N-acylethanolamine (NAE) from N-acyl-phosphatidylethanolamine (NAPE) in the second step of the biosynthesis of N-acylethanolamine (Okamoto et al., 2004 [PubMed 14634025]).

Source: NCBI Gene 222236 — RefSeq curated summary.

At a glance

  • Clinical variants (ClinVar): 78 total — 1 pathogenic
  • GTEx eGene: eQTL in 39 tissues, sQTL in 5 (q < 0.05)
  • ChEMBL bioactivity: 1 clinical-phase molecule tested; no curated mechanism-of-action drug
  • Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.80 (unconstrained)
  • MANE Select transcript: NM_001122838
  • Notable: 78 clinical variants but no curated precision-oncology (CIViC) evidence yet

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:21683
Approved symbolNAPEPLD
NameN-acyl phosphatidylethanolamine phospholipase D
Location7q22.1
Locus typegene with protein product
StatusApproved
AliasesFMP30, C7orf18, NAPE-PLD
Ensembl geneENSG00000161048
Ensembl biotypeprotein_coding
OMIM612334
Entrez222236

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 23 protein_coding, 2 retained_intron, 2 nonsense_mediated_decay

MANE Select: ENST00000465647

Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 4, TSL 2: 2, TSL 4: 2, TSL 5: 2

ENST00000465647, ENST00000341533, ENST00000414118, ENST00000417955, ENST00000418294, ENST00000420631, ENST00000422589, ENST00000425379, ENST00000427257, ENST00000479761, ENST00000873865, ENST00000873866, ENST00000873867, ENST00000873868, ENST00000873869, ENST00000873870, ENST00000873871, ENST00000873872, ENST00000873873, ENST00000873874, ENST00000873875, ENST00000965816, ENST00000965817, ENST00000965818, ENST00000976742, ENST00001113453, ENST00001139176

RefSeq mRNA: 21 — MANE Select: NM_001122838 NM_001122838, NM_001386176, NM_001386177, NM_001386179, NM_001386182, NM_001386185, NM_001386189, NM_001386190, NM_001386191, NM_001386193, NM_001386194, NM_001386204, NM_001386205, NM_001386207, NM_001386208, NM_001386209, NM_001386210, NM_001386211, NM_001386212, NM_001386213, NM_198990

CCDS: CCDS5729

Canonical transcript exons

ENST00000465647 — 5 exons

ExonStartEnd
ENSE00001056131103115060103115174
ENSE00001132741103119577103120223
ENSE00001375894103148811103149099
ENSE00003496286103128483103128792
ENSE00004794339103099776103103554

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 95.38.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.3350 / max 172.2434, expressed in 1161 samples.

Highest expression (Bgee): corpus callosum, ventricular zone, superior frontal gyrus, duodenum, primary visual cortex.

Genetic regulation across tissues (GTEx eQTL / sQTL)

NAPEPLD is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 39 tissues and its splicing (sQTL) in 5 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.

showing 20 of 44 significant tissue × QTL associations:

TissueQTLq-valueSlopeLead variant
Cells Cultured fibroblastseqtl8.8e-39+0.657:103142628:T:C
Adipose Subcutaneouseqtl3.5e-28+0.577:103144994:C:T
Esophagus Musculariseqtl5.7e-26+0.607:103149048:A:G
Thyroideqtl2.0e-21+0.577:103155184:C:A
Skin Sun Exposed Lower legeqtl5.0e-19+0.377:103149048:A:G
Artery Tibialeqtl1.5e-17+0.417:103149048:A:G
Skin Not Sun Exposed Suprapubiceqtl1.7e-15+0.367:103142628:T:C
Esophagus Mucosaeqtl2.9e-14+0.437:103241045:G:A
Testiseqtl5.5e-14+0.897:103101697:C:T
Muscle Skeletaleqtl1.3e-13+0.397:103149048:A:G
Colon Sigmoideqtl6.1e-11+0.447:103241045:G:A
Adipose Visceral Omentumeqtl6.8e-10-0.377:103408276:C:G
Breast Mammary Tissueeqtl1.1e-09+0.397:103149048:A:G
Esophagus Gastroesophageal Junctioneqtl4.2e-09+0.487:103149048:A:G
Pituitaryeqtl9.0e-08-0.617:103351841:G:C
Lungeqtl7.8e-07+0.347:103159979:A:G
Heart Atrial Appendageeqtl6.1e-06+0.337:103235009:C:G
Stomacheqtl6.6e-06+0.327:103141999:A:C
Nerve Tibialeqtl1.4e-05-0.287:103371062:G:A
Spleeneqtl1.4e-05-0.377:103015625:C:T

FANTOM5 promoters

5 alternative TSS:

Promoter IDTPM avgSamples expressed
853682.5003997
853690.4008204
853650.210275
853660.154578
853670.069129

Top tissues by expression

showing 100 of 134 tissues by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
corpus callosumUBERON:000233695.38gold quality
ventricular zoneUBERON:000305395.36gold quality
superior frontal gyrusUBERON:000266191.93gold quality
duodenumUBERON:000211490.66gold quality
primary visual cortexUBERON:000243690.53gold quality
Brodmann (1909) area 9UBERON:001354090.32gold quality
prefrontal cortexUBERON:000045190.05gold quality
dorsolateral prefrontal cortexUBERON:000983489.31gold quality
rectumUBERON:000105289.10gold quality
frontal cortexUBERON:000187088.88gold quality
cerebellar cortexUBERON:000212988.65gold quality
cerebellar hemisphereUBERON:000224588.63gold quality
mucosa of transverse colonUBERON:000499188.59gold quality
cerebellumUBERON:000203788.51gold quality
cerebral cortexUBERON:000095688.28gold quality
right hemisphere of cerebellumUBERON:001489088.22gold quality
ganglionic eminenceUBERON:000402387.29gold quality
metanephros cortexUBERON:001053387.25gold quality
right frontal lobeUBERON:000281086.81gold quality
anterior cingulate cortexUBERON:000983586.68gold quality
C1 segment of cervical spinal cordUBERON:000646986.46gold quality
brainUBERON:000095586.19gold quality
colonic epitheliumUBERON:000039786.12gold quality
Ammon’s hornUBERON:000195486.05gold quality
adrenal tissueUBERON:001830385.87gold quality
substantia nigraUBERON:000203885.68gold quality
amygdalaUBERON:000187685.61gold quality
kidneyUBERON:000211385.57gold quality
temporal lobeUBERON:000187185.53gold quality
endometriumUBERON:000129585.51gold quality
adult mammalian kidneyUBERON:000008285.43gold quality
cortex of kidneyUBERON:000122585.35gold quality
putamenUBERON:000187485.18gold quality
caudate nucleusUBERON:000187385.02gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047384.92gold quality
right uterine tubeUBERON:000130284.73gold quality
transverse colonUBERON:000115784.52gold quality
ovaryUBERON:000099284.35gold quality
left ovaryUBERON:000211983.99gold quality
right ovaryUBERON:000211883.79gold quality
descending thoracic aortaUBERON:000234583.77gold quality
nucleus accumbensUBERON:000188283.64gold quality
right testisUBERON:000453483.48gold quality
testisUBERON:000047383.45gold quality
left testisUBERON:000453383.25gold quality
hypothalamusUBERON:000189882.91gold quality
spleenUBERON:000210682.85gold quality
intestineUBERON:000016082.46gold quality
thyroid glandUBERON:000204682.42gold quality
gall bladderUBERON:000211082.33gold quality
small intestineUBERON:000210882.31gold quality
right lobe of liverUBERON:000111482.27gold quality
colonUBERON:000115582.17gold quality
left lobe of thyroid glandUBERON:000112082.06gold quality
right lobe of thyroid glandUBERON:000111981.89gold quality
right coronary arteryUBERON:000162581.84gold quality
liverUBERON:000210781.78gold quality
small intestine Peyer’s patchUBERON:000345481.66gold quality
stomachUBERON:000094581.64gold quality
calcaneal tendonUBERON:000370181.55gold quality
thoracic aortaUBERON:000151581.37gold quality
tibial nerveUBERON:000132381.25gold quality
ascending aortaUBERON:000149681.22gold quality
islet of LangerhansUBERON:000000680.94gold quality
fallopian tubeUBERON:000388980.87gold quality
body of stomachUBERON:000116180.79gold quality
primordial germ cell in gonadCL:0000670 ∩ UBERON:000099180.71gold quality
smooth muscle tissueUBERON:000113580.64gold quality
pancreasUBERON:000126480.54gold quality
adrenal glandUBERON:000236980.49gold quality
muscle tissueUBERON:000238580.40gold quality
right adrenal gland cortexUBERON:003582780.37gold quality
popliteal arteryUBERON:000225080.36gold quality
right adrenal glandUBERON:000123380.35gold quality
tibial arteryUBERON:000761080.35gold quality
body of pancreasUBERON:000115080.33gold quality
fundus of stomachUBERON:000116080.18gold quality
skeletal muscle tissueUBERON:000113480.12gold quality
multicellular organismUBERON:000046879.89gold quality
left adrenal glandUBERON:000123479.87gold quality
urinary bladderUBERON:000125579.86gold quality
left adrenal gland cortexUBERON:003582579.65gold quality
lymph nodeUBERON:000002979.55gold quality
left coronary arteryUBERON:000162679.54gold quality
cortical plateUBERON:000534379.43gold quality
endocervixUBERON:000045878.99gold quality
vermiform appendixUBERON:000115478.83gold quality
muscle layer of sigmoid colonUBERON:003580578.62gold quality
hindlimb stylopod muscleUBERON:000425278.33gold quality
prostate glandUBERON:000236778.31gold quality
muscle of legUBERON:000138378.24gold quality
body of uterusUBERON:000985378.04gold quality
gastrocnemiusUBERON:000138878.03gold quality
esophagogastric junction muscularis propriaUBERON:003584177.84gold quality
uterine cervixUBERON:000000277.67gold quality
myometriumUBERON:000129677.61gold quality
lower esophagus muscularis layerUBERON:003583377.41gold quality
lower esophagusUBERON:001347377.40gold quality
adenohypophysisUBERON:000219677.28gold quality
pituitary glandUBERON:000000777.25gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes3.07
E-GEOD-99795no175.32

HPA expression

RNA tissue specificity: Low tissue specificity

showing 60 of 80 HPA tissues / cells by nTPM:

Tissue / cellAxisnTPMProtein (IHC)
Cerebral cortextissue48.0low
Somatosensory cortextissue48.0
Motor cortextissue42.5
Occipital cortextissue41.7
Prefrontal cortextissue36.7
Corpus callosumtissue36.3
Retrosplenial and cingulate cortextissue35.5
Hippocampal formationtissue34.3
Entorhinal cortextissue33.6
Retrosplenial cortextissue33.5
Postcentral gyrustissue32.1
Temporal cortextissue32.0
Insular cortextissue30.6
Putamentissue29.0
Midbraintissue25.8
Thalamustissue25.4
Nucleus accumbenstissue25.3
Ventral forebraintissue24.5
Medulla oblongatatissue24.0
Superior colliculitissue22.8
Substantia nigratissue22.2
Ponstissue21.6
Septumtissue21.6
Basal gangliatissue21.3not detected
Hippocampustissue21.3not detected
Amygdalatissue19.2
Spinal cordtissue19.1
Periaqueductal graytissue18.9
Hypothalamustissue18.4
Locus coeruleustissue17.6
Kidneytissue13.9high
Duodenumtissue13.6medium
Olfactory bulbtissue12.2
Choroid plexustissue10.9
Stomach 1tissue9.3medium
Cerebellumtissue9.3medium
Small intestinetissue9.1medium
Frontal cortextissue8.0
Thyroid glandtissue7.7medium
Colontissue7.2high
Rectumtissue7.0medium
Livertissue7.0low
Ovarytissue6.6medium
Testistissue6.3medium
Spleentissue6.1low
Parathyroid glandtissue5.6not detected
Gallbladdertissue5.5medium
Fallopian tubetissue5.0medium
Retinatissue4.5
Adrenal glandtissue4.4medium
Prostatetissue4.2low
Heart muscletissue3.7medium
Endometrium 1tissue3.4low
Appendixtissue3.4low
Cervixtissue3.3not detected
Urinary bladdertissue3.3medium
Pancreastissue3.3medium
Seminal vesicletissue3.2medium
Caudate putamentissue3.2
Lymph nodetissue3.1medium

Brain sub-regions (HPA Brain Atlas): detected in 192; highest nTPM — Parieto-temporal junction (white matter) (44.6), Corpus callosum, genu (white matter) (41.4), Corpus callosum, splenium (white matter) (41.4), Angular gyrus (white matter) (41.0), Occipital cortex (white matter) (41.0).

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): IRF6, SP1

miRNA regulators (miRDB)

Targeting NAPEPLD by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).

showing 30 of 182 miRNAs:

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-6867-5P100.0082.213464
HSA-MIR-450A-1-3P100.0069.331837
HSA-MIR-3924100.0072.092394
HSA-MIR-4481100.0066.421669
HSA-MIR-8485100.0077.574731
HSA-MIR-1277-5P100.0073.955056
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-428299.9975.366408
HSA-MIR-366299.9973.825684
HSA-MIR-318599.9968.121959
HSA-MIR-4789-3P99.9970.752484
HSA-MIR-186-5P99.9970.833707
HSA-MIR-569699.9872.364487
HSA-MIR-19A-3P99.9875.332762
HSA-MIR-19B-3P99.9875.442754
HSA-MIR-314899.9775.066478
HSA-MIR-3688-3P99.9772.022834
HSA-MIR-302E99.9670.742669
HSA-MIR-6778-3P99.9667.292693
HSA-MIR-570-3P99.9672.414910
HSA-MIR-551B-5P99.9671.283493
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-MIR-96-5P99.9572.802140
HSA-MIR-548J-3P99.9472.614881
HSA-MIR-218-5P99.9372.222103
HSA-MIR-314399.9371.963104
HSA-MIR-335-3P99.9373.364958
HSA-MIR-548AE-3P99.9372.664867
HSA-MIR-548AH-3P99.9372.544872

Functional genomics

gnomAD constraint: pLI 0.000796, LOEUF 0.801, missense Z 1.43 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD

Regional missense constraint (gnomAD RMC): no regional variation along ENST00000465647 — one region, missense o/e 0.86.

Literature-anchored findings (GeneRIF, showing 12)

  • The human NAPE-PLD was activated by phosphatidylethanolamine and inhibited by the beta-lactamase substrate nitrocefin. (PMID:19715685)
  • During the menstrual cycle, NAPE-PLD immunoreactivity was down-regulated in the secretory epithelial gland compared to the proliferative epithelial gland and unaffected in the stroma. (PMID:20369362)
  • a common haplotype in NAPEPLD, an enzyme involved in endocannabinoid synthesis, was protective against obesity. (PMID:20885390)
  • The results of this study suggested that NAPEPLD was alterated in multip;e sclerosis. (PMID:21251115)
  • NAPE-PLD expression increase steadily after infancy, peaking in adulthood. (PMID:22827915)
  • The differential expression of NAPE-PLD and FAAH suggests that Anandamide could play an important role in the pathophysiology of preeclampsia. (PMID:23122699)
  • a major physiological role of NAPE-PLD (PMID:24018423)
  • our results do not support a clear role of FAAH, CNR1 and NAPE-PLD in BD and lithium response. (PMID:24126189)
  • NAPE-PLD forms homodimers partly separated by an internal channel and uniquely adapted to associate with phospholipids. (PMID:25684574)
  • The AC genotype and C allele of NAPE-PLD rs12540583 locus are risk factors for schizophrenia. (PMID:29652995)
  • Transcriptome analysis revealed that deletion of NAPE-PLD activates a transcriptional program for nutrient transportation, including lipids and lipoproteins, and inactivates cell-cycle or mitosis-related genes in Caco-2 cells. (PMID:30399323)
  • NAPE-PLD is target of thiazide diuretics for hypertension. Its internal channel promotes transport of the cofactor PLP across cell membranes. (PMID:39999832)

Cross-species orthologs

5 orthologs

OrganismSymbolGene ID
danio_rerionapepldENSDARG00000009252
mus_musculusNapepldENSMUSG00000044968
rattus_norvegicusNapepldENSRNOG00000011363
caenorhabditis_elegansWBGENE00021370
caenorhabditis_elegansWBGENE00021371

Mouse-model phenotypes

Observed phenotypes of the mouse ortholog (MGI:2140885) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 2 distinct phenotype terms.

Mouse phenotype (MP)Records
abnormal lipid homeostasis1
abnormal brain morphology1

Additional cross-species homologs

Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.

OrganismUniProtIdentityMethod
Mycobacterium tuberculosis variant bovis AF2122/97P64760100.0%Diamond
Mycobacterium tuberculosis CDC1551P9WKP2100.0%Diamond
Mycobacterium tuberculosis H37RvP9WKP3100.0%Diamond
Pongo abeliiQ5RCU398.2%Diamond
Bos taurusQ58CN990.5%Diamond
Klebsiella pneumoniaeQ4841246.2%Diamond
Purpureocillium lilacinumA0A179HLJ837.3%Diamond
Saccharomyces cerevisiae S288CQ0288334.6%Diamond

Genomic neighbors (locus context)

Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).

SymbolTypeEntrez
FBXL13protein-coding222235
NFE4ncRNA58160
ARMC10protein-coding83787
DNAJC2protein-coding27000
PMPCBprotein-coding9512
LRRC17protein-coding10234
FAM185Aprotein-coding222234
PSMC2protein-coding5701

Protein

Protein identifiers

N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D — Q6IQ20 (reviewed: Q6IQ20)

All UniProt accessions (3): Q6IQ20, C9JGB1, H0Y4Y2

UniProt curated annotations — full annotation on UniProt →

Function. D-type phospholipase that hydrolyzes N-acyl-phosphatidylethanolamines (NAPEs) to produce bioactive N-acylethanolamines/fatty acid ethanolamides (NAEs/FAEs) and phosphatidic acid. Cleaves the terminal phosphodiester bond of diacyl- and alkenylacyl-NAPEs, primarily playing a role in the generation of long-chain saturated and monounsaturated NAEs in the brain. May control NAPE homeostasis in dopaminergic neuron membranes and regulate neuron survival, partly through RAC1 activation. As a regulator of lipid metabolism in the adipose tissue, mediates the crosstalk between adipocytes, gut microbiota and immune cells to control body temperature and weight. In particular, regulates energy homeostasis by promoting cold-induced brown or beige adipocyte differentiation program to generate heat from fatty acids and glucose. Has limited D-type phospholipase activity toward N-acyl lyso-NAPEs.

Subunit / interactions. Homodimer. Bile acids promote the assembly of inactive monomers into an active dimer and enable catalysis.

Subcellular location. Golgi apparatus membrane. Early endosome membrane. Nucleus envelope. Nucleus. Nucleoplasm.

Tissue specificity. Widely expressed. Highest expression in brain, kidney and testis (at protein level). Expressed in adipose tissue (at protein level).

Activity regulation. Activated by divalent cations. Activated by bile acids and their conjugates, except for lithocholic acid which is rather inhibitory. Binding of deoxycholic acid favors the selective release of anandamide and likely other unsatured long FAEs. Inhibited by phosphatidylethanolamines.

Cofactor. Binds 2 zinc divalent cations per subunit.

Similarity. Belongs to the NAPE-PLD family.

RefSeq proteins (21): NP_001116310, NP_001373105, NP_001373106, NP_001373108, NP_001373111, NP_001373114, NP_001373118, NP_001373119, NP_001373120, NP_001373122, NP_001373123, NP_001373133, NP_001373134, NP_001373136, NP_001373137, NP_001373138, NP_001373139, NP_001373140, NP_001373141, NP_001373142, NP_945341 (=MANE)

Domains & families (InterPro)

IDNameType
IPR001279Metallo-B-lactamasDomain
IPR024884NAPE-PLDFamily
IPR036866RibonucZ/Hydroxyglut_hydroHomologous_superfamily

Pfam: PF12706

Enzyme classification (BRENDA)

  • EC 3.1.4.54 — N-acetylphosphatidylethanolamine-hydrolysing phospholipase D (BRENDA: 4 organisms, 50 substrates, 156 inhibitors, 35 Km, 0 kcat entries)

Substrate kinetics (BRENDA)

12 substrates with measured Km, best-characterized 12. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
N-PALMITOYL-1,2-DIOLEOYL-PHOSPHATIDYLETHANOLAMIN0.002–0.064715
N-PALMITOYLPHOSPHATIDYLETHANOLAMINE0.0017–0.04510
DIFLUORIDO[2-(HEXYLOXY)-3-(PHOSPHONOOXY)PROPYL 50.0041
DIFLUORIDO[2-(HEXYLOXY)-3-(PHOSPHONOOXY)PROPYL 50.0031
FLAME-NAPE0.00921
N-ARACHIDONOYL-1,2-DIOLEOYLPHOSPHATIDYLETHANOLAM0.00281
N-ARACHIDONOYL-1-OLEOYL-2-LYSOPHOSPHATIDYLETHANO0.0041
N-ARACHIDONOYLPHOSPHATIDYLETHANOLAMINE0.041
N-OLEOYL-1,2-DIOLEOYLPHOSPHATIDYLETHANOLAMINE0.00291
N-PALMITOYL-1-PALMITOYL-2-LINOLEOYLPHOSPHATIDYLE0.00331
N-PALMITOYL-1-PALMITOYL-2-LYSOPHOSPHATIDYLETHANO0.0041
N-STEAROYL-1,2-DIOLEOYLPHOSPHATIDYLETHANOLAMINE0.00341

Catalyzed reactions (Rhea)

  • an N-acyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine + H2O = an N-acylethanolamine + a 1,2-diacyl-sn-glycero-3-phosphate + H(+) (RHEA:33159)
  • N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine + 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45528)
  • N,1,2-tri-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-(9Z-octadecenoyl) ethanolamine + 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45532)
  • N-octadecanoyl-1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-octadecanoyl ethanolamine + 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45536)
  • N-hexadecanoyl-1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-hexadecanoylethanolamine + 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45540)
  • N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-1-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine + 1-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45544)
  • N-tetradecanoyl-1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-tetradecanoylethanolamine + 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45552)
  • N-dodecanoyl-1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-dodecanoylethanolamine + 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45556)
  • N,1-dihexadecanoyl-sn-glycero-3-phosphoethanolamine + H2O = N-hexadecanoylethanolamine + 1-hexadecanoyl-sn-glycero-3-phosphate + H(+) (RHEA:45592)
  • N,1-dihexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphoethanolamine + H2O = 1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphate + N-hexadecanoylethanolamine + H(+) (RHEA:45596)
  • N-decanoyl-1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-decanoyl ethanolamine + 1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45608)
  • N-octanoyl-1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphoethanolamine + H2O = N-octanoyl ethanolamine + 1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphate + H(+) (RHEA:45612)

UniProt features (59 total): strand 20, binding site 13, helix 9, mutagenesis site 5, turn 4, sequence variant 2, sequence conflict 2, chain 1, region of interest 1, modified residue 1, compositionally biased region 1

Structure

Experimental structures (PDB)

4 structures by resolution:

PDBTitleMethodResolution (Å)
4QN9Structure of human NAPE-PLDX-RAY DIFFRACTION2.65
8P90TARGET COMPLEX 2X-RAY DIFFRACTION2.8
8PC4MEMBRANE TARGET COMPLEX 1X-RAY DIFFRACTION2.85
8P96TARGET COMPLEX 3X-RAY DIFFRACTION2.86

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q6IQ20-F187.360.78

Human Protein Atlas

Protein class: Enzymes, ENZYME proteins, Hydrolases, Predicted intracellular proteins

Protein evidence: Evidence at protein level

Subcellular location (HPA, imaging): cytosol

Antibody reliability (HPA): IH approved · IF uncertain

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (13)

PositionRole
260deoxycholate
284Zn(2+)
321an N-acyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine
343Zn(2+)
348deoxycholate
185Zn(2+)
187Zn(2+)
188an N-acyl-1,2-diacyl-sn-glycero-3-phosphoethanolamine
189Zn(2+)
190Zn(2+)
253Zn(2+)
256deoxycholate

Post-translational modifications (1)

TypePositions
N-acetylmethionine1

Mutagenesis-validated functional residues (5)

PositionPhenotype
158impairs homodimerization resulting in loss of activity; when associated with s-159.
159impairs homodimerization resulting in loss of activity; when associated with s-158.
207loss of activity.
257impairs binding to bile acids resulting in loss of activity.
380loss of activity.

Function

Pathways and Gene Ontology

Reactome pathways

1 curated (TAS) of 5; 5 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).

5 pathways:

IDPathwayEvidence
R-HSA-2466712Biosynthesis of A2E, implicated in retinal degradation ⚕curated
R-HSA-1643685Disease ⚕—
R-HSA-2474795Diseases associated with visual transduction ⚕—
R-HSA-9675143Diseases of the neuronal system ⚕—
R-HSA-2453864Retinoid cycle disease events ⚕—

MSigDB gene sets: 228 (showing top): SHEPARD_BMYB_MORPHOLINO_UP, GOBP_RESPONSE_TO_ETHANOL, GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_REGULATION_OF_FAT_CELL_DIFFERENTIATION, GOBP_BEHAVIOR, GOBP_INFLAMMATORY_RESPONSE, GCANCTGNY_MYOD_Q6, GOBP_POSITIVE_REGULATION_OF_FAT_CELL_DIFFERENTIATION, GOBP_MODULATION_OF_PROCESS_OF_ANOTHER_ORGANISM, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_REGULATION_OF_BROWN_FAT_CELL_DIFFERENTIATION, CAGCTG_AP4_Q5, YY1_Q6, GOBP_GLYCEROLIPID_METABOLIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_RESPONSE_TO_EXTERNAL_STIMULUS

GO Biological Process (13): temperature homeostasis (GO:0001659), phospholipid catabolic process (GO:0009395), response to isolation stress (GO:0035900), response to ethanol (GO:0045471), host-mediated modulation of intestinal microbiota composition (GO:0048874), positive regulation of inflammatory response (GO:0050729), N-acylethanolamine metabolic process (GO:0070291), N-acylphosphatidylethanolamine metabolic process (GO:0070292), positive regulation of brown fat cell differentiation (GO:0090336), negative regulation of eating behavior (GO:1903999), lipid metabolic process (GO:0006629), phospholipid metabolic process (GO:0006644), lipid catabolic process (GO:0016042)

GO Molecular Function (7): zinc ion binding (GO:0008270), bile acid binding (GO:0032052), identical protein binding (GO:0042802), N-acylphosphatidylethanolamine-specific phospholipase D activity (GO:0070290), glycerophospholipase activity (GO:0004620), hydrolase activity (GO:0016787), metal ion binding (GO:0046872)

GO Cellular Component (16): Golgi membrane (GO:0000139), nuclear envelope (GO:0005635), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), early endosome (GO:0005769), Golgi apparatus (GO:0005794), smooth endoplasmic reticulum membrane (GO:0030868), early endosome membrane (GO:0031901), photoreceptor outer segment membrane (GO:0042622), presynaptic membrane (GO:0042734), neuron projection (GO:0043005), neuronal cell body (GO:0043025), postsynaptic membrane (GO:0045211), extracellular exosome (GO:0070062), hippocampal mossy fiber to CA3 synapse (GO:0098686), presynapse (GO:0098793)

Reactome top-level categories

4 top-level categories:

CategoryPathways
Retinoid cycle disease events1
Diseases associated with visual transduction1
Diseases of the neuronal system1
Disease1

GO top-level categories

59 GO namespaces:

CategoryTerms
cellular anatomical structure3
lipid metabolic process2
bounding membrane of organelle2
endomembrane system2
synaptic membrane2
multicellular organismal-level homeostasis1
phospholipid metabolic process1
lipid catabolic process1
organophosphate catabolic process1
multicellular organismal response to stress1
response to alcohol1
homeostasis of number of cells1
host-mediated perturbation of symbiont process1
inflammatory response1
positive regulation of defense response1
positive regulation of response to external stimulus1
regulation of inflammatory response1
primary alcohol metabolic process1
phosphatidylethanolamine metabolic process1
positive regulation of fat cell differentiation1
brown fat cell differentiation1
regulation of brown fat cell differentiation1
eating behavior1
regulation of eating behavior1
negative regulation of feeding behavior1
primary metabolic process1
organophosphate metabolic process1
catabolic process1
transition metal ion binding1
monocarboxylic acid binding1
protein binding1
D-type glycerophospholipase activity1
phospholipase activity1
catalytic activity1
cation binding1
Golgi apparatus1
nucleus1
organelle envelope1
nuclear lumen1
intracellular anatomical structure1
endosome1
cytoplasm1
intracellular membrane-bounded organelle1
endoplasmic reticulum membrane1
smooth endoplasmic reticulum1
early endosome1
endosome membrane1
photoreceptor outer segment1
ciliary membrane1
presynapse1
plasma membrane bounded cell projection1
somatodendritic compartment1
cell body1
postsynapse1
extracellular vesicle1
thorny excrescence1
neuron to neuron synapse1
hippocampal mossy fiber expansion1
synapse1

Experimentally-supported GO annotations

GO terms backed by direct experimental evidence (ECO experimental codes) — 7 of 36 annotations. The rest are phylogenetic / computational / electronic (IEA).

7 experimentally-supported GO terms:

GO termNSEvidence
N-acylphosphatidylethanolamine metabolic processBPdirect assay
Golgi apparatusCCdirect assay
extracellular exosomeCChigh-throughput assay
N-acylphosphatidylethanolamine-specific phospholipase D activityMFdirect assay
bile acid bindingMFdirect assay
identical protein bindingMFphysical interaction
zinc ion bindingMFdirect assay

Protein interactions and networks

STRING

showing 15 of 682 interactions by confidence (×1000):

Protein AProtein BPartner UniProtScore
NAPEPLDFAAHO00519923
NAPEPLDPLD2O14939910
NAPEPLDMGLLQ99685907
NAPEPLDDAGLBQ8NCG7905
NAPEPLDDAGLAQ9Y4D2891
NAPEPLDGDE1Q9NZC3848
NAPEPLDABHD4Q8TB40833
NAPEPLDABHD6Q9BV23823
NAPEPLDNAAAQ02083808
NAPEPLDABHD12Q8N2K0781
NAPEPLDCNR1P21554773
NAPEPLDFAAH2Q6GMR7771
NAPEPLDGPR55Q9Y2T6771
NAPEPLDTRPV1Q8NER1731
NAPEPLDGPR119Q8TDV5704

IntAct

Human interaction partners of NAPEPLD in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).

1 partners by confidence:

PartnerInteraction typeMIscoreRecords
DISC1physical association0.0001

BioGRID (5 interactions; top human partners by supporting records): CLEC4M (Affinity Capture-MS), DDX39A (Affinity Capture-RNA), LMBRD1 (Cross-Linking-MS (XL-MS)), NUDT21 (Affinity Capture-RNA), PPP1CC (Two-hybrid)

Disease & clinical

Genetic variants

Variant evidence for NAPEPLD: 78 ClinVar records (1 pathogenic / likely pathogenic). Per-variant detail is on Sugi Variant.

ClinVar

78 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic0
Uncertain significance58
Likely benign2
Benign2

Top pathogenic / likely-pathogenic (1)

Showing all 1 pathogenic / likely-pathogenic ClinVar records, ranked by ClinVar review status (expert panel → multiple submitters → single submitter), then by number of submitting labs.

Variant IDHGVSClassificationReviewSubmitters
4070958NM_001122838.3(NAPEPLD):c.945G>T (p.Trp315Cys)Pathogenicno assertion criteria provided1

Per-variant reference — Sugi Variant

Explore NAPEPLD’s pathogenic and likely-pathogenic variants individually — each with its ClinVar classification and conditions, applied ACMG criteria (ClinGen expert panel, where curated), the calibrated in-silico predictors (AlphaMissense, REVEL, SaProt, conservation), gnomAD frequency, and the predictor-disagreement QC signal — on Sugi Variant.

SpliceAI

Top 10 splice-impact sites by Δscore (adjacent positions with the same effect merged into one range; 21 predictions of 1,030):

Position(s)EffectΔscoreSites
7:103128597donor_gain1.0000
7:103148054donor_gain1.0000
7:103103459donor_gain0.9900
7:103103561acceptor_gain0.9900
7:103117683donor_gain0.9900
7:103120228–103120232acceptor_gain0.99003
7:103128793–103128794acceptor_loss0.99006
7:103148886donor_gain0.9900
7:103103560acceptor_gain0.9800
7:103119575–103119576donor_loss0.98005

AlphaMissense

913 missense substitutions predicted likely pathogenic (of 2,628 scored), across 223 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:

ResidueLikely-pathogenic substitutionsMean am_pathogenicityMax am_pathogenicity
D18980.9800.990
H19080.9800.992
D14780.9760.992
H18580.9740.984
H25380.9720.987
D28480.9710.995
H18780.9680.982
H32180.9650.983
H34380.9560.988
D19280.9430.981
H13280.9340.973
W23270.9880.998
W20970.9870.999
W26770.9820.998
F34770.9700.993
W12970.9670.995
F6570.9650.990
W27070.9650.998
W23370.9590.996
S18470.9560.999

HPA cancer prognostics

RNA cancer specificity: Low cancer specificity

Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.

3 prognostic cancer types:

CancerPrognosticp-value
Kidney Renal Clear Cell Carcinoma (TCGA)favorable3.35e-08
Pancreatic Adenocarcinoma (TCGA)unfavorable7.56e-05
Rectum Adenocarcinoma (TCGA)favorable0.000954

Disease associations

OMIM: gene MIM:612334 | disease phenotypes: MIM:143890

GenCC curated gene-disease

Mondo (1): hypercholesterolemia, familial, 1 (MONDO:0007750)

Orphanet (1): Homozygous familial hypercholesterolemia (Orphanet:391665)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL4630839 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

Phase ≥1, by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 26,440 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

1 molecules by phase:

MoleculeNamePhasePatents
CHEMBL496HEXACHLOROPHENE426,440

PharmGKB: 1 entry (CPIC guideline: no)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — N-Acylethanolamine turnover

Most potent curated ligand interactions (8 total), top 8:

LigandActionAffinityParameter
LEI-401Inhibition7.57pKi
N3SABinding7.48pKd
indapamideBinding6.24pKd
chlorthalidoneBinding6.17pKd
hydrochlorothiazideBinding5.1pKd
hexachloropheneInhibition5.01pIC50
bithionolInhibition4.97pIC50
ARN19874Inhibition4.47pIC50

Binding affinities (BindingDB)

105 measured of 113 human assays (113 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValue
CHEMBL4794048IC5072 nM
CHEMBL4761882IC50110 nM
CHEMBL4782800IC50112 nM
CHEMBL4752937IC50155 nM
CHEMBL4754918IC50209 nM
CHEMBL4751223IC50224 nM
CHEMBL4783103IC50224 nM
CHEMBL4759968IC50234 nM
CHEMBL4760293IC50251 nM
CHEMBL4752023IC50282 nM
CHEMBL4747615IC50288 nM
CHEMBL4764910IC50302 nM
CHEMBL4750592IC50324 nM
CHEMBL4760794IC50380 nM
CHEMBL4752088IC50380 nM
CHEMBL4746912IC50389 nM
CHEMBL4750134IC50407 nM
CHEMBL4795010IC50427 nM
CHEMBL4764783IC50490 nM
CHEMBL4787774IC50501 nM
CHEMBL4743071IC50525 nM
CHEMBL4750396IC50603 nM
CHEMBL4756143IC50646 nM
CHEMBL4741598IC50646 nM
CHEMBL4792394IC50708 nM
CHEMBL4764562IC50741 nM
CHEMBL4787757IC50741 nM
CHEMBL4795013IC50776 nM
CHEMBL4790197IC50813 nM
CHEMBL4747267IC50832 nM
CHEMBL4762577IC50851 nM
CHEMBL4789858IC50891 nM
CHEMBL4795197IC50912 nM
CHEMBL4745098IC50977 nM
CHEMBL4764089IC501000 nM
CHEMBL4777828IC501000 nM
CHEMBL4750056IC501070 nM
CHEMBL4764340IC501100 nM
CHEMBL4756683IC501100 nM
CHEMBL4751965IC501120 nM
CHEMBL4779869IC501180 nM
CHEMBL4776045IC501200 nM
CHEMBL4757430IC501200 nM
CHEMBL4786525IC501230 nM
SMR000058356IC501300 nM
CHEMBL4749127IC501410 nM
CHEMBL4762175IC501440 nM
CHEMBL4740570IC501580 nM
CHEMBL4740363IC501660 nM
CHEMBL4755036IC501820 nM

ChEMBL bioactivities

82 potent at pChembl≥5 of 106 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
7.14IC5072.44nMCHEMBL4794048
6.96IC50109.7nMCHEMBL4761882
6.95IC50112.2nMCHEMBL4782800
6.81IC50154.9nMCHEMBL4752937
6.68IC50208.9nMCHEMBL4754918
6.65IC50223.9nMCHEMBL4751223
6.65IC50223.9nMCHEMBL4783103
6.63IC50234.4nMCHEMBL4759968
6.60IC50251.2nMCHEMBL4760293
6.55IC50281.8nMCHEMBL4752023
6.54IC50288.4nMCHEMBL4747615
6.52IC50302nMCHEMBL4764910
6.49IC50323.6nMCHEMBL4750592
6.42IC50380.2nMCHEMBL4760794
6.42IC50380.2nMCHEMBL4752088
6.41IC50389.1nMCHEMBL4746912
6.39IC50407.4nMCHEMBL4750134
6.37IC50426.6nMCHEMBL4795010
6.31IC50489.8nMCHEMBL4764783
6.30IC50501.2nMCHEMBL4787774
6.28IC50524.8nMCHEMBL4743071
6.22IC50602.6nMCHEMBL4750396
6.19IC50645.6nMCHEMBL4756143
6.19IC50645.6nMCHEMBL4741598
6.15IC50708nMCHEMBL4792394
6.13IC50741.3nMCHEMBL4764562
6.13IC50741.3nMCHEMBL4787757
6.11IC50776.2nMCHEMBL4795013
6.09IC50812.8nMCHEMBL4790197
6.08IC50831.8nMCHEMBL4747267
6.07IC50851.1nMCHEMBL4762577
6.05IC50891.2nMCHEMBL4789858
6.04IC50912nMCHEMBL4795197
6.01IC50977.2nMCHEMBL4745098
6.00IC501000nMCHEMBL4764089
6.00IC501000nMCHEMBL4777828
5.97IC501072nMCHEMBL4750056
5.96IC501096nMCHEMBL4764340
5.96IC501096nMCHEMBL4756683
5.95IC501122nMCHEMBL4751965
5.93IC501175nMCHEMBL4779869
5.92IC501202nMCHEMBL4776045
5.92IC501202nMCHEMBL4757430
5.91IC501230nMCHEMBL4786525
5.85IC501413nMCHEMBL4749127
5.84IC501445nMCHEMBL4762175
5.80IC501585nMCHEMBL4740570
5.80IC501600nMHEXACHLOROPHENE
5.78IC501660nMCHEMBL4740363
5.74IC501820nMCHEMBL4755036

PubChem BioAssay actives

82 with measured affinity, of 115 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
N-(cyclopropylmethyl)-6-[(3S)-3-hydroxypyrrolidin-1-yl]-2-[(3S)-3-phenylpiperidin-1-yl]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.0724uM
N-(cyclopropylmethyl)-6-[(3R)-3-hydroxypyrrolidin-1-yl]-2-[(3S)-3-phenylpiperidin-1-yl]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.1096uM
N-(cyclopropylmethyl)-6-(dimethylamino)-2-[(3S)-3-phenylpiperidin-1-yl]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.1122uM
N-(cyclopropylmethyl)-2,6-bis[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.1549uM
N-(cyclopropylmethyl)-6-morpholin-4-yl-2-[(3S)-3-phenylpiperidin-1-yl]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.2089uM
N-(cyclopropylmethyl)-6-(3-hydroxypyrrolidin-1-yl)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.2239uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-pyrrolidin-1-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.2239uM
N-(cyclopropylmethyl)-6-[(3S)-3-hydroxypyrrolidin-1-yl]-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.2344uM
N-(cyclopropylmethyl)-6-[(3S)-3-hydroxypyrrolidin-1-yl]-2-[(3R)-3-phenylpiperidin-1-yl]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.2512uM
N-(cyclopropylmethyl)-6-morpholin-4-yl-2-[2-phenylethyl(propan-2-yl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.2818uM
N-(cyclopropylmethyl)-6-(dimethylamino)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.2884uM
N-(cyclopropylmethyl)-6-[(3R)-3-hydroxypyrrolidin-1-yl]-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.3020uM
N-(cyclopropylmethyl)-6-[(3R)-3-hydroxypyrrolidin-1-yl]-2-[(3R)-3-phenylpiperidin-1-yl]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.3236uM
N-(cyclopropylmethyl)-6-morpholin-4-yl-2-(3-phenylpiperidin-1-yl)pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.3802uM
2-(2-benzylpyrrolidin-1-yl)-N-(cyclopropylmethyl)-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.3802uM
N-(cyclopropylmethyl)-6-(3,3-difluoropiperidin-1-yl)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.3891uM
N-(cyclopropylmethyl)-6-(dimethylamino)-2-[(3R)-3-phenylpiperidin-1-yl]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.4074uM
6-(azetidin-1-yl)-N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.4266uM
N-(cyclopropylmethyl)-2-[methyl-[2-(2-phenylphenyl)ethyl]amino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.4898uM
N-(cyclopropylmethyl)-6-(diethylamino)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.5012uM
2-[bis(2-phenylethyl)amino]-N-(cyclopropylmethyl)-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.5248uM
N-(cyclopropylmethyl)-2-[methyl-[2-(2-phenoxyphenyl)ethyl]amino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.6026uM
N-(cyclopropylmethyl)-2-[ethyl(2-phenylethyl)amino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.6456uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-piperidin-1-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.6456uM
N-(cyclopropylmethyl)-6-(3-methoxypyrrolidin-1-yl)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.7079uM
2-[benzyl(2-phenylethyl)amino]-N-(cyclopropylmethyl)-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.7413uM
2-(2-benzylpiperidin-1-yl)-N-(cyclopropylmethyl)-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.7413uM
N-(cyclopropylmethyl)-2-[2-(2-methoxyphenyl)ethyl-methylamino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.7762uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.8128uM
methyl 2-[[2-[methyl(2-phenylethyl)amino]-6-morpholin-4-ylpyrimidine-4-carbonyl]amino]acetate1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.8318uM
N-(cyclopropylmethyl)-6-(methylamino)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.8511uM
N-(cyclopropylmethyl)-2-[methyl-[2-(2-methylphenyl)ethyl]amino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.8912uM
2-[methyl(2-phenylethyl)amino]-6-morpholin-4-yl-N-prop-2-ynylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.9120uM
2-[2-(2-chlorophenyl)ethyl-methylamino]-N-(cyclopropylmethyl)-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic500.9772uM
2-(4-benzyl-3-phenylpiperazin-1-yl)-N-(cyclopropylmethyl)-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.0000uM
N-(cyclopropylmethyl)-6-[2-hydroxyethyl(methyl)amino]-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.0000uM
N-(cyclopropylmethyl)-2-[methyl(2-thiophen-2-ylethyl)amino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.0715uM
N-(cyclopropylmethyl)-2-[cyclopropyl(2-phenylethyl)amino]-6-morpholin-4-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.0965uM
6-[benzyl(methyl)amino]-N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.0965uM
N-(cyclopropylmethyl)-6-morpholin-4-yl-2-[N-(2-phenylethyl)anilino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.1220uM
N-(cyclopropylmethyl)-6-(3,3-difluoropyrrolidin-1-yl)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.1749uM
6-(4-acetylpiperazin-1-yl)-N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.2023uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-pyrazol-1-ylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.2023uM
N-(cyclopropylmethyl)-6-morpholin-4-yl-2-(2-phenylmorpholin-4-yl)pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.2303uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-(3-phenylpyrrolidin-1-yl)pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.4125uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-morpholin-4-ylpyridine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.4454uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-(4-methylpiperazin-1-yl)pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.5849uM
3,4,6-trichloro-2-[(2,3,5-trichloro-6-hydroxyphenyl)methyl]phenol1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.6000uM
N-(cyclopropylmethyl)-2-[methyl(2-phenylethyl)amino]-6-(2-oxa-6-azaspiro[3.3]heptan-6-yl)pyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.6596uM
2-[methyl(2-phenylethyl)amino]-6-morpholin-4-yl-N-propylpyrimidine-4-carboxamide1707626: Inhibition of full length human NAPE-PLD expressed in HEK293T cell lysate using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured at 2 mins interval for 1 hr by tecan-plate reader analysisic501.8197uM

CTD chemical–gene interactions

38 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Valproic Acidaffects expression, increases expression3
potassium chromate(VI)decreases expression, affects cotreatment2
Dronabinolaffects expression, decreases expression2
Tobacco Smoke Pollutiondecreases expression2
Cyclosporinedecreases expression2
Cadmium Chloridedecreases expression, increases expression2
methylmercuric chloridedecreases expression1
triphenyl phosphateaffects expression1
cannabichromenedecreases expression, increases expression1
trichostatin Aincreases expression1
tris(2-butoxyethyl) phosphateaffects expression1
beta-lapachonedecreases expression1
tris(1,3-dichloro-2-propyl)phosphatedecreases expression1
sodium arsenitedecreases expression1
butyraldehydedecreases expression1
epigallocatechin gallateaffects cotreatment, decreases expression1
di-n-butylphosphoric acidaffects expression1
chromium hexavalent iondecreases expression1
perfluoro-n-nonanoic aciddecreases expression1
Temozolomidedecreases expression1
Zoledronic Acidincreases expression1
Acetaminophendecreases expression1
Air Pollutantsdecreases expression, increases abundance1
Air Pollutants, Occupationaldecreases expression1
Benzo(a)pyreneincreases methylation1
Cannabidiolincreases expression1
Cannabinoldecreases expression1
Carbamazepineaffects expression1
Diclofenacaffects expression1
Golddecreases expression1

ChEMBL screening assays

3 unique, capped per target: 3 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL4626925BindingInhibition of full length human NAPE-PLD expressed in HEK293T cells assessed as enzyme remaining activity at 10 uM using PED6 as substrate preincubated for 30 mins followed by substrate addition and measured for 1 hr at 2 mins relative to cStructure-Activity Relationship Studies of α-Ketoamides as Inhibitors of the Phospholipase A and Acyltransferase Enzyme Family. — *J Med Chem*

Clinical trials (associated diseases)

Via MONDO — disease-level, not drug-specific.

28 trials:

NCTPhaseStatusTitle
NCT06231459Phase 4COMPLETEDExpression of Pro- and Anti-inflammatory Cytokines During Anti-PCSK9 in Familial Hypercholesterolemia
NCT00000594Phase 3COMPLETEDNHLBI Type II Coronary Intervention Study
NCT00092833Phase 3TERMINATEDInvestigational Drug in Patients With Hypercholesterolemia or in Patients With Sitosterolemia (0653-026)(COMPLETED)
NCT00134485Phase 3COMPLETEDStudy To Evaluate The Safety And Efficacy Of Torcetrapib/Atorvastatin In Subjects With Familial Hypercholerolemia
NCT00134511Phase 3COMPLETEDStudy To Evaluate The Effect Of Torcetrapib/Atorvastatin In Patients With Genetic High Cholesterol Disorder
NCT00136981Phase 3COMPLETEDCarotid B-Mode Ultrasound Study to Compare Anti-Atherosclerotic Effect of Torcetrpib/Atorvastatin to Atorvastatin Alone.
NCT00384293Phase 3TERMINATEDCarotid IMT (Intima Media Thickening) Study (0524A-041)(TERMINATED)
NCT01524289Phase 3COMPLETEDStudy to Assess the Tolerability and Efficacy of Anacetrapib (MK-0859) Co-Administered With Statin in Participants With Heterozygous Familial Hypercholesterolemia (MK-0859-020)
NCT00280995Phase 2COMPLETEDDose-escalating Safety Study of ISIS 301012 in Homozygous Familial Hypercholesterolemia Subjects on Lipid Lowering Therapy
NCT00281008Phase 2COMPLETEDStudy of ISIS 301012 (Mipomersen) in Heterozygous Familial Hypercholesterolemia Subjects on Lipid Lowering Therapy
NCT01375751Phase 2COMPLETEDReduction of Low-Density Lipoprotein Cholesterol (LDL-C) With PCSK9 Inhibition in Heterozygous Familial Hypercholesterolemia Disorder Study
NCT00515307Phase 1COMPLETEDBone Marrow Stem Cells as a Source of Allogenic Hepatocyte Transplantation in Homozygous Familial Hypercholesterolemia
NCT01583647Phase 1TERMINATEDA Study of Extended-release (ER) Niacin/Laropiprant in Adolescents With Heterozygous Familial Hypercholesterolemia (MK-0524A-158)
NCT00005168Not specifiedCOMPLETEDHyperapo B and Coronary Heart Disease
NCT01753232Not specifiedCOMPLETEDSafety and Efficacy of the DALI LDL-adsorber and MONET Lipoprotein Filter
NCT03018678Not specifiedCOMPLETEDScreening Protocol for a Gene Therapy Trial in Subjects With Homozygous Familial Hypercholesterolemia
NCT03110432Not specifiedCOMPLETEDProspective German Very High Cardiovascular Risk Patients Dyslipidemia Treatment Indication Registry
NCT03795038Not specifiedCOMPLETEDComparison of the Plasma Lipoprotein Apheresis Systems DIAMED and MONET vs. the Whole Blood Apheresis System DALI
NCT03989167Not specifiedRECRUITINGClinical Decision Support for Familial Hypercholesterolemia
NCT04073797Not specifiedUNKNOWNPET Imaging of Inflammation and Lipid Lowering Study
NCT04118348Not specifiedCOMPLETEDEvaluating the Efficacy of Pediatric Lipid Screening Alerts
NCT04313270Not specifiedUNKNOWNSubclinical Atherosclerosis in Patients With Familial Hypercholesterolemia Treated With Evolocumab®
NCT04526457Not specifiedCOMPLETEDIs Family Screening Improved by Genetic Testing of Familial Hypercholesterolemia
NCT04656028Not specifiedACTIVE_NOT_RECRUITINGGenetic Testing and Motivational Counseling for FH
NCT04722068Not specifiedCOMPLETEDRegeneron 1331 Kinetics Sub-Study HoFH
NCT04837638Not specifiedUNKNOWNDiet Quality and Coronary Artery Calcification in Adults With Heterozygous Familial Hypercholesterolemia
NCT06555120Not specifiedRECRUITINGScreening for Familial Hypercholesterolemia in Children
NCT07543731Not specifiedRECRUITINGA Real-World Study of Long-Term Adherence and Persistence to Inclisiran, Evolocumab, and Alirocumab

Predicted chemistry — Sugi Predict

The predicted patent-compound landscape for NAPEPLD across ~30M SureChEMBL compounds — explore on Sugi Predict.