NAV2-IT1

Summary

NAV2-IT1 (NAV2 intronic transcript 1, HGNC:41416) is a long non-coding RNA gene on chromosome 11p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41416
Approved symbol	NAV2-IT1
Name	NAV2 intronic transcript 1
Location	11p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255270
Ensembl biotype	lncRNA
Entrez	100874305
RNAcentral	URS000012A8C0 — lncRNA, 506 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000528204

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000528204 — 2 exons

Exon	Start	End
ENSE00002165806	19384620	19385014
ENSE00002186593	19380484	19380594

Expression profiles

Bgee: expression breadth ubiquitous, 109 present calls, max score 91.43.

Top tissues by expression

206 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.43	gold quality
bone marrow cell	CL:0002092	75.37	gold quality
buccal mucosa cell	CL:0002336	70.88	silver quality
corpus callosum	UBERON:0002336	69.55	gold quality
calcaneal tendon	UBERON:0003701	65.03	gold quality
tendon of biceps brachii	UBERON:0008188	63.56	gold quality
tendon	UBERON:0000043	63.46	gold quality
colonic epithelium	UBERON:0000397	60.78	silver quality
stromal cell of endometrium	CL:0002255	60.72	gold quality
islet of Langerhans	UBERON:0000006	55.52	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.20	gold quality
medial globus pallidus	UBERON:0002477	53.07	silver quality
smooth muscle tissue	UBERON:0001135	52.85	gold quality
right lobe of liver	UBERON:0001114	52.70	gold quality
prefrontal cortex	UBERON:0000451	51.08	gold quality
globus pallidus	UBERON:0001875	50.25	silver quality
pancreas	UBERON:0001264	49.97	gold quality
skin of hip	UBERON:0001554	49.60	silver quality
gastrocnemius	UBERON:0001388	49.26	silver quality
thyroid gland	UBERON:0002046	48.39	gold quality
omental fat pad	UBERON:0010414	47.75	gold quality
peritoneum	UBERON:0002358	47.72	gold quality
liver	UBERON:0002107	47.71	silver quality
right adrenal gland cortex	UBERON:0035827	47.31	gold quality
adipose tissue of abdominal region	UBERON:0007808	47.27	gold quality
rectum	UBERON:0001052	47.22	gold quality
nasal cavity mucosa	UBERON:0001826	47.00	gold quality
bone marrow	UBERON:0002371	46.88	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	46.87	gold quality
monocyte	CL:0000576	46.34	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.