NCKAP5-IT1

Summary

NCKAP5-IT1 (NCKAP5 intronic transcript 1, HGNC:41497) is a long non-coding RNA gene on chromosome 2q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:41497
Approved symbol	NCKAP5-IT1
Name	NCKAP5 intronic transcript 1
Location	2q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232474
Ensembl biotype	lncRNA
Entrez	100874346
RNAcentral	URS0000477719 — lncRNA, 554 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000416437

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416437 — 2 exons

Exon	Start	End
ENSE00001600576	133433496	133433897
ENSE00001643904	133431666	133431817

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 78.04.

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
corpus callosum	UBERON:0002336	78.04	gold quality
tonsil	UBERON:0002372	68.20	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.55	gold quality
liver	UBERON:0002107	60.68	gold quality
calcaneal tendon	UBERON:0003701	59.69	gold quality
sural nerve	UBERON:0015488	59.57	silver quality
cortex of kidney	UBERON:0001225	59.43	gold quality
monocyte	CL:0000576	59.31	gold quality
adrenal tissue	UBERON:0018303	56.47	gold quality
uterine cervix	UBERON:0000002	55.57	gold quality
muscle of leg	UBERON:0001383	54.67	gold quality
blood	UBERON:0000178	54.31	gold quality
right lobe of liver	UBERON:0001114	53.63	gold quality
ectocervix	UBERON:0012249	53.15	gold quality
superior frontal gyrus	UBERON:0002661	52.74	gold quality
ovary	UBERON:0000992	52.31	gold quality
lung	UBERON:0002048	51.35	gold quality
kidney	UBERON:0002113	51.15	gold quality
intestine	UBERON:0000160	50.82	gold quality
urinary bladder	UBERON:0001255	50.16	silver quality
body of pancreas	UBERON:0001150	49.00	gold quality
colon	UBERON:0001155	48.69	gold quality
tibial artery	UBERON:0007610	48.48	gold quality
stomach	UBERON:0000945	48.45	gold quality
small intestine	UBERON:0002108	47.79	gold quality
heart	UBERON:0000948	47.31	gold quality
small intestine Peyer’s patch	UBERON:0003454	47.27	gold quality
adult mammalian kidney	UBERON:0000082	47.08	silver quality
prefrontal cortex	UBERON:0000451	46.56	gold quality
esophagus	UBERON:0001043	45.83	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.