NDRG1
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Also known as DRG1RTPTDD5NDR1
Summary
NDRG1 (N-myc downstream regulated 1, HGNC:7679) is a protein-coding gene on chromosome 8q24.22, encoding Protein NDRG1 (Q92597). Stress-responsive protein involved in hormone responses, cell growth, and differentiation.
This gene is a member of the N-myc downregulated gene family which belongs to the alpha/beta hydrolase superfamily. The protein encoded by this gene is a cytoplasmic protein involved in stress responses, hormone responses, cell growth, and differentiation. The encoded protein is necessary for p53-mediated caspase activation and apoptosis. Mutations in this gene are a cause of Charcot-Marie-Tooth disease type 4D, and expression of this gene may be a prognostic indicator for several types of cancer. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene.
Source: NCBI Gene 10397 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Charcot-Marie-Tooth disease type 4D (Definitive, GenCC)
- GWAS associations: 4
- Clinical variants (ClinVar): 832 total — 20 pathogenic, 22 likely-pathogenic
- Phenotypes (HPO): 70
- Druggable target: yes
- Dosage sensitivity (ClinGen): haploinsufficiency autosomal recessive, triplosensitivity unscored
- MANE Select transcript:
NM_006096
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7679 |
| Approved symbol | NDRG1 |
| Name | N-myc downstream regulated 1 |
| Location | 8q24.22 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DRG1, RTP, TDD5, NDR1 |
| Ensembl gene | ENSG00000104419 |
| Ensembl biotype | protein_coding |
| OMIM | 605262 |
| Entrez | 10397 |
Gene structure
Transcript identifiers
Ensembl transcripts: 61 — 28 protein_coding, 18 protein_coding_CDS_not_defined, 10 retained_intron, 5 nonsense_mediated_decay
ENST00000323851, ENST00000414097, ENST00000517331, ENST00000517599, ENST00000517745, ENST00000518010, ENST00000518066, ENST00000518094, ENST00000518176, ENST00000518480, ENST00000519228, ENST00000519278, ENST00000519580, ENST00000520230, ENST00000520943, ENST00000521026, ENST00000521414, ENST00000521438, ENST00000521544, ENST00000521664, ENST00000522377, ENST00000522476, ENST00000522665, ENST00000522738, ENST00000522890, ENST00000523642, ENST00000523892, ENST00000523931, ENST00000537882, ENST00000674521, ENST00000674536, ENST00000674605, ENST00000674705, ENST00000674804, ENST00000674839, ENST00000674902, ENST00000674925, ENST00000675010, ENST00000675036, ENST00000675056, ENST00000675068, ENST00000675172, ENST00000675273, ENST00000675357, ENST00000675414, ENST00000675429, ENST00000675437, ENST00000675531, ENST00000675568, ENST00000675600, ENST00000675860, ENST00000675983, ENST00000676005, ENST00000676022, ENST00000676064, ENST00000676124, ENST00000676142, ENST00000676222, ENST00000676341, ENST00000676375, ENST00000676444
RefSeq mRNA: 8 — MANE Select: NM_006096
NM_001135242, NM_001258432, NM_001258433, NM_001374844, NM_001374845, NM_001374846, NM_001374847, NM_006096
CCDS: CCDS34945, CCDS59113
Canonical transcript exons
ENST00000323851 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00003463021 | 133259168 | 133259230 |
| ENSE00003469756 | 133258366 | 133258426 |
| ENSE00003489192 | 133242023 | 133242074 |
| ENSE00003493203 | 133254539 | 133254595 |
| ENSE00003500130 | 133250440 | 133250543 |
| ENSE00003534087 | 133256777 | 133256863 |
| ENSE00003550197 | 133264547 | 133264652 |
| ENSE00003562139 | 133247875 | 133247926 |
| ENSE00003568157 | 133244355 | 133244390 |
| ENSE00003570300 | 133248715 | 133248771 |
| ENSE00003571810 | 133280232 | 133280267 |
| ENSE00003632772 | 133246616 | 133246663 |
| ENSE00003667452 | 133284249 | 133284329 |
| ENSE00003785926 | 133262047 | 133262167 |
| ENSE00003897431 | 133237175 | 133239119 |
| ENSE00003901912 | 133297134 | 133297252 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 99.80.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 112.0112 / max 2257.4449, expressed in 1806 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 95154 | 109.7746 | 1805 |
| 95149 | 0.7116 | 377 |
| 95150 | 0.4187 | 197 |
| 95152 | 0.3808 | 189 |
| 95151 | 0.3050 | 147 |
| 95146 | 0.2452 | 97 |
| 95155 | 0.1753 | 80 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| olfactory bulb | UBERON:0002264 | 99.80 | gold quality |
| medial globus pallidus | UBERON:0002477 | 99.77 | gold quality |
| tibial nerve | UBERON:0001323 | 99.73 | gold quality |
| globus pallidus | UBERON:0001875 | 99.69 | gold quality |
| corpus callosum | UBERON:0002336 | 99.64 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.62 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.61 | gold quality |
| inferior olivary complex | UBERON:0002127 | 99.61 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 99.60 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 99.59 | gold quality |
| skin of leg | UBERON:0001511 | 99.57 | gold quality |
| renal medulla | UBERON:0000362 | 99.53 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 99.53 | gold quality |
| vagina | UBERON:0000996 | 99.50 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 99.48 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 99.45 | gold quality |
| esophagus mucosa | UBERON:0002469 | 99.44 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 99.44 | gold quality |
| cranial nerve II | UBERON:0000941 | 99.40 | gold quality |
| ectocervix | UBERON:0012249 | 99.40 | gold quality |
| spinal cord | UBERON:0002240 | 99.37 | gold quality |
| pericardium | UBERON:0002407 | 99.36 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 99.36 | gold quality |
| squamous epithelium | UBERON:0006914 | 99.31 | gold quality |
| zone of skin | UBERON:0000014 | 99.30 | gold quality |
| gingival epithelium | UBERON:0001949 | 99.28 | gold quality |
| ileal mucosa | UBERON:0000331 | 99.27 | gold quality |
| prostate gland | UBERON:0002367 | 99.27 | gold quality |
| mucosa of stomach | UBERON:0001199 | 99.25 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 99.24 | gold quality |
Single-cell (SCXA)
Detected in 16 experiment(s), a significant marker in 13.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-7 | yes | 2788.87 |
| E-ENAD-21 | yes | 2724.97 |
| E-MTAB-8495 | yes | 1538.56 |
| E-MTAB-10662 | yes | 1208.28 |
| E-ENAD-20 | yes | 422.99 |
| E-HCAD-1 | yes | 222.57 |
| E-GEOD-135922 | yes | 38.20 |
| E-CURD-119 | yes | 28.28 |
| E-GEOD-125970 | yes | 15.68 |
| E-HCAD-10 | yes | 13.93 |
| E-MTAB-6678 | yes | 9.30 |
| E-GEOD-137537 | yes | 6.82 |
| E-MTAB-8142 | no | 2188.25 |
| E-ENAD-27 | no | 171.02 |
| E-CURD-112 | no | 2.67 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, EGR1, EPAS1, ETS1, FOXD3, HIF1A, HR, MAX, MBD1, MTF1, MYC, MYCN, PBX1, PPARG, PTEN, SIRT1, SP1, TBX2, TCF3, TP53, YBX1
miRNA regulators (miRDB)
87 targeting NDRG1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4713-3P | 100.00 | 65.92 | 505 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-3605-5P | 99.96 | 67.12 | 932 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-96-5P | 99.95 | 72.80 | 2140 |
| HSA-MIR-6753-3P | 99.93 | 66.57 | 637 |
| HSA-MIR-7107-3P | 99.93 | 66.73 | 627 |
| HSA-MIR-1297 | 99.91 | 73.41 | 3162 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
| HSA-MIR-12119 | 99.87 | 68.35 | 1653 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-374C-5P | 99.80 | 72.06 | 2910 |
| HSA-MIR-655-3P | 99.80 | 72.19 | 2909 |
| HSA-MIR-34B-5P | 99.78 | 67.56 | 1175 |
| HSA-MIR-449C-5P | 99.78 | 67.63 | 1168 |
| HSA-MIR-202-5P | 99.78 | 67.65 | 991 |
| HSA-MIR-1299 | 99.77 | 71.24 | 2389 |
Functional genomics
ClinGen dosage: haploinsufficiency 30 (autosomal recessive), triplosensitivity Not yet evaluated (unscored). ClinGen Gene Dosage Map
Literature-anchored findings (GeneRIF, showing 40)
- examination as diagnostic aid due to overexpression in cancer cells (PMID:12046693)
- Cap43 overexpression in cancer cells involves a state of hypoxia characteristic of cancer cells where the Cap43 protein becomes a signature for this hypoxic state (PMID:12429530)
- Expression of this protein, a differentiation-related gene, has wide normal human tissue distribution and is in the SW480 colon neoplasm tumor cell line. (PMID:12432451)
- Downregulation of Cap43 gene by von Hippel-Lindau tumor suppressor protein in renal cancer cells. (PMID:12767066)
- Two disease causing mutations in NDRG1 in Charcot-Marie-Tooth Disease patients. (PMID:12872253)
- Ndrg1 gene is a Myc negative target in human neuroblastomas and other cell types with overexpressed N- or c-myc (PMID:12962147)
- NDRG1 gene may play an important role in colorectal carcinogenesis (PMID:14966915)
- Rit42 plays a role in the regulation of microtubule dynamics and the maintenance of euploidy (PMID:15247272)
- Increased Ndrg1 expression following Fe chelation was related to the permeability and antiproliferative activity of chelators. Ndrg1 up-regulation after iron chelation occurred at the transcriptional level. (PMID:15251988)
- NDRG1 is necessary but not sufficient for p53-mediated caspase activation and apoptosis (PMID:15377670)
- results identify NDRG1 and NDRG2 as physiological substrates for SGK1, and demonstrate that phosphorylation of NDRG1 by SGK1 primes it for phosphorylation by GSK3 (PMID:15461589)
- Drg1 expression may be associated with a less aggressive, indolent colorectal cancer. (PMID:15867226)
- NDRG1 interacts with APO A-I and A-II and may have a role in the general mechanisms of HDL-mediated cholesterol transport (PMID:15922294)
- Collectively these findings establish the importance of intracellular ascorbate levels for the regulation of expression of CA IX and NDRG1/Cap43. (PMID:16288478)
- NDRG1 interacts with SIRT1/p53 signaling to attenuate hypoxic injury in human trophoblasts (PMID:16314423)
- NDRG1 was up-regulated in differentiated leukemic cells after hypoxia or CoCl2 treatment via HIF-1a, which was reported involved in cell differentiation. The results indicated NDRG1 might play important role in the regulation of cell differentiation. (PMID:16622835)
- E2-induced down-regulation of Cap43 seems to be mediated through ER-alpha-dependent pathways in breast cancer cells both in culture and in patients (PMID:16707596)
- Analysis of specimens from 65 patients with pancreatic ductal adenocarcinoma showed a significant association between Cap43 expression and tumor microvascular density, depth of invasion, and histopathologic grading. (PMID:16778198)
- NDRG1 will not serve as a reliable marker of tumour cells in the pancreas, but may serve as a marker of differentiation. (PMID:16832411)
- The discovery that iron chelators also increase Ndrg-1 expression further augments their antitumor activity and provides a novel strategy for the treatment of cancer and its metastasis. [REVIEW] (PMID:16920733)
- Decreased expression of NDRG! mRNA expression was accompanied by the local progression of esophageal squamous cell carcinoma. (PMID:17069588)
- identified 58 proteins that interact with NDRG1 in prostate cancer cells (PMID:17220478)
- hypoxia is a potent inducer of NDRG1 in HCCs, albeit requiring additional stimuli within the tumour microenvironment for its recruitment to the membrane (PMID:17316623)
- NDRG1 mRNA remains associated with polysomes during hypoxia. (PMID:17488873)
- NDRG1 expression was correlated with various clinicopathological features and clinical outcomes in colorectal cancer depending on the race/ethnicity of the patients. (PMID:17569115)
- NDRG1 knockdown cells show a delay in recycling transferrin, conversely NDRG1 overexpressing cells reveal an increase in rate of transferrin recycling (PMID:17786215)
- The N-myc down regulated Gene1 (NDRG1) is a Rab4a effector involved in vesicular recycling of E-cadherin. (PMID:17786215)
- Egr-1 regulates NDRG1 transcription through an overlapping Egr-1/Sp1 binding site that acts as a major site of positive regulation of the NDRG1 promoter by hypoxia signaling. (PMID:17909017)
- Development of endometrial carcinoma is associated with an overexpression of NDRG1 and the loss of PTEN expression. (PMID:18377423)
- our results demonstrate that, in common with NDRG2, human NDRG1 can be indirectly transcriptionally down-regulated by Myc via interaction with the NDRG1 core promoter. (PMID:18455888)
- Ndrg-1 reduced the protein levels of cathepsin C which plays a role in invasion, indicating a potential mechanism of its anti-metastatic role in pancreatic cancer cells (PMID:18582504)
- Localization of N-myc downstream-regulated gene 1 and its significant correlation with p53 expression may play an important role in gastric cancer progression. (PMID:18602353)
- Data suggest that alteration of PTEN may upregulate NDRG1, which may be an important gene in facilitating endometrium carcinogenesis. (PMID:18653908)
- NDRG1/Cap43 may have a role in portal vein invasion and intrahepatic metastasis in human hepatocellular carcinoma (PMID:19020710)
- the role of NDRG1 protein in myeloid leukemic cell differentiation. (PMID:19046768)
- NDRG1 represents an additional diagnostic marker for brain tumor detection (PMID:19082468)
- the present study provides for the first time that the NDRG1 mRNA level is statistically significantly correlated with lymph node metastases, metastases to distant organs, and the degree of tumor cells differentiation. (PMID:19259744)
- Decreased expression of NDRG1 in glioma is related to tumor progression. (PMID:19337694)
- Overexpression of Cap43 is associated with malignant status of esophageal cancer (PMID:19414333)
- study suggests a novel mechanism by which NDRG1/Cap43 modulates tumor angiogenesis/growth and infiltration of macrophages/neutrophils through attenuation of NF-kappaB signaling (PMID:19491262)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ndrg1b | ENSDARG00000010420 |
| danio_rerio | ndrg1a | ENSDARG00000032849 |
| mus_musculus | Ndrg1 | ENSMUSG00000005125 |
| rattus_norvegicus | Ndrg1 | ENSRNOG00000007393 |
| drosophila_melanogaster | CG2082 | FBGN0027608 |
| drosophila_melanogaster | MESK2 | FBGN0043070 |
| caenorhabditis_elegans | Y48G10A.3 | WBGENE00013020 |
| caenorhabditis_elegans | WBGENE00014213 |
Paralogs (3): NDRG3 (ENSG00000101079), NDRG4 (ENSG00000103034), NDRG2 (ENSG00000165795)
Protein
Protein identifiers
Protein NDRG1 — Q92597 (reviewed: Q92597)
Alternative names: Differentiation-related gene 1 protein, N-myc downstream-regulated gene 1 protein, Nickel-specific induction protein Cap43, Reducing agents and tunicamycin-responsive protein, Rit42
All UniProt accessions (27): Q92597, A0A6Q8PF06, A0A6Q8PF16, A0A6Q8PF28, A0A6Q8PF71, A0A6Q8PFB3, A0A6Q8PFG2, A0A6Q8PFP2, A0A6Q8PFR8, A0A6Q8PGD3, A0A6Q8PGF1, A0A6Q8PGJ1, A0A6Q8PHF2, A0A6Q8PHI0, A0A7I2ST14, E5RG99, E5RGG6, E5RGM5, E5RH82, E5RI76, E5RIM2, E5RIR1, E5RIV1, E5RJ98, E5RJY1, E5RK17, E7ESM1
UniProt curated annotations — full annotation on UniProt →
Function. Stress-responsive protein involved in hormone responses, cell growth, and differentiation. Acts as a tumor suppressor in many cell types. Necessary but not sufficient for p53/TP53-mediated caspase activation and apoptosis. Has a role in cell trafficking, notably of the Schwann cell, and is necessary for the maintenance and development of the peripheral nerve myelin sheath. Required for vesicular recycling of CDH1 and TF. May also function in lipid trafficking. Protects cells from spindle disruption damage. Functions in p53/TP53-dependent mitotic spindle checkpoint. Regulates microtubule dynamics and maintains euploidy.
Subunit / interactions. Interacts with RAB4A (membrane-bound form); the interaction involves NDRG1 in vesicular recycling of CDH1.
Subcellular location. Cytoplasm. Cytosol. Cytoskeleton. Microtubule organizing center. Centrosome. Nucleus. Cell membrane.
Tissue specificity. Ubiquitous; expressed most prominently in placental membranes and prostate, kidney, small intestine, and ovary tissues. Also expressed in heart, brain, skeletal muscle, lung, liver and pancreas. Low levels in peripheral blood leukocytes and in tissues of the immune system. Expressed mainly in epithelial cells. Also found in Schwann cells of peripheral neurons. Reduced expression in adenocarcinomas compared to normal tissues. In colon, prostate and placental membranes, the cells that border the lumen show the highest expression.
Post-translational modifications. Under stress conditions, phosphorylated in the C-terminal on many serine and threonine residues. Phosphorylated in vitro by PKA. Phosphorylation enhanced by increased intracellular cAMP levels. Homocysteine induces dephosphorylation. Phosphorylation by SGK1 is cell cycle dependent.
Disease relevance. Charcot-Marie-Tooth disease, demyelinating, type 4D (CMT4D) [MIM:601455] A recessive demyelinating form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Demyelinating neuropathies are characterized by severely reduced nerve conduction velocities (less than 38 m/sec), segmental demyelination and remyelination with onion bulb formations on nerve biopsy, slowly progressive distal muscle atrophy and weakness, absent deep tendon reflexes, and hollow feet. By convention autosomal recessive forms of demyelinating Charcot-Marie-Tooth disease are designated CMT4. The disease is caused by variants affecting the gene represented in this entry.
Induction. By homocysteine, 2-mercaptoethanol, tunicamycin in endothelial cells. Induced approximately 20-fold during in vitro differentiation of the colon carcinoma cell lines HT-29-D4 and Caco-2. Induced by oxidative stress in colon cancers. Decreased expression in colon adenomas and adenocarcinomas. Induced by nickel compounds in all tested cell lines. The primary signal for its induction is an elevation of free intracellular calcium ion caused by nickel ion exposure. Okadaic acid, a serine/threonine phosphatase inhibitor, induced its expression more rapidly and more efficiently than nickel.
Similarity. Belongs to the NDRG family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q92597-1 | 1 | yes |
| Q92597-2 | 2 | |
| Q92597-3 | 3 |
RefSeq proteins (8): NP_001128714, NP_001245361, NP_001245362, NP_001361773, NP_001361774, NP_001361775, NP_001361776, NP_006087* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004142 | NDRG | Family |
| IPR029058 | AB_hydrolase_fold | Homologous_superfamily |
Pfam: PF03096
UniProt features (57 total): modified residue 19, helix 14, strand 8, repeat 3, splice variant 2, sequence variant 2, turn 2, region of interest 2, compositionally biased region 2, initiator methionine 1, chain 1, sequence conflict 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6ZMM | X-RAY DIFFRACTION | 2.96 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q92597-F1 | 78.45 | 0.58 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (19): 2, 319, 326, 328, 330, 332, 333, 335, 336, 340, 342, 346, 352, 356, 362, 364, 366, 375, 2
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-6803205 | TP53 regulates transcription of several additional cell death genes whose specific roles in p53-dependent apoptosis remain uncertain |
| R-HSA-212436 | Generic Transcription Pathway |
| R-HSA-3700989 | Transcriptional Regulation by TP53 |
| R-HSA-5633008 | TP53 Regulates Transcription of Cell Death Genes |
| R-HSA-73857 | RNA Polymerase II Transcription |
| R-HSA-74160 | Gene expression (Transcription) |
MSigDB gene sets: 906 (showing top):
MORF_MTA1, GOBP_CYTOPLASMIC_TRANSLATION, GOBP_CHROMOSOME_ORGANIZATION, GOBP_REGULATION_OF_PROTEIN_POLYMERIZATION, FREAC2_01, BENPORATH_ES_WITH_H3K27ME3, GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, TGCGCANK_UNKNOWN, BASSO_B_LYMPHOCYTE_NETWORK, PEREZ_TP63_TARGETS, MORF_UBE2I, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_DN, MENSE_HYPOXIA_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN
GO Biological Process (7): signal transduction (GO:0007165), negative regulation of cell population proliferation (GO:0008285), response to metal ion (GO:0010038), DNA damage response, signal transduction by p53 class mediator (GO:0030330), peripheral nervous system myelin maintenance (GO:0032287), mast cell activation (GO:0045576), cellular response to hypoxia (GO:0071456)
GO Molecular Function (6): microtubule binding (GO:0008017), nickel cation binding (GO:0016151), small GTPase binding (GO:0031267), gamma-tubulin binding (GO:0043015), cadherin binding (GO:0045296), protein binding (GO:0005515)
GO Cellular Component (18): nucleus (GO:0005634), cytoplasm (GO:0005737), centrosome (GO:0005813), cytosol (GO:0005829), microtubule (GO:0005874), plasma membrane (GO:0005886), adherens junction (GO:0005912), microtubule cytoskeleton (GO:0015630), perinuclear region of cytoplasm (GO:0048471), recycling endosome membrane (GO:0055038), extracellular exosome (GO:0070062), sperm midpiece (GO:0097225), sperm principal piece (GO:0097228), sperm end piece (GO:0097229), sperm head-tail coupling apparatus (GO:0120212), sperm glycocalyx (GO:0120238), cytoskeleton (GO:0005856), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| TP53 Regulates Transcription of Cell Death Genes | 1 |
| RNA Polymerase II Transcription | 1 |
| Generic Transcription Pathway | 1 |
| Transcriptional Regulation by TP53 | 1 |
| Gene expression (Transcription) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 8 |
| sperm flagellum | 3 |
| tubulin binding | 2 |
| cytoplasm | 2 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| cell population proliferation | 1 |
| regulation of cell population proliferation | 1 |
| negative regulation of cellular process | 1 |
| response to chemical | 1 |
| signal transduction in response to DNA damage | 1 |
| signal transduction by p53 class mediator | 1 |
| myelination in peripheral nervous system | 1 |
| myelin maintenance | 1 |
| myeloid leukocyte activation | 1 |
| response to hypoxia | 1 |
| cellular response to stress | 1 |
| cellular response to decreased oxygen levels | 1 |
| transition metal ion binding | 1 |
| GTPase binding | 1 |
| cell adhesion molecule binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular anatomical structure | 1 |
| centriole | 1 |
| microtubule organizing center | 1 |
| microtubule cytoskeleton | 1 |
| polymeric cytoskeletal fiber | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cell-cell junction | 1 |
| cytoskeleton | 1 |
| endosome membrane | 1 |
| recycling endosome | 1 |
| extracellular vesicle | 1 |
| glycocalyx | 1 |
| intracellular membraneless organelle | 1 |
Protein interactions and networks
STRING
2054 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NDRG1 | MYCN | P04198 | 916 |
| NDRG1 | STK38L | Q9Y2H1 | 894 |
| NDRG1 | CCN4 | O95388 | 802 |
| NDRG1 | TRMT2A | Q8IZ69 | 663 |
| NDRG1 | SLC25A18 | Q9H1K4 | 646 |
| NDRG1 | SGK1 | O00141 | 633 |
| NDRG1 | HIF1A | Q16665 | 619 |
| NDRG1 | SH3TC2 | Q8TF17 | 599 |
| NDRG1 | SGK3 | Q96BR1 | 568 |
| NDRG1 | SLC45A3 | Q96JT2 | 557 |
| NDRG1 | RICTOR | Q6R327 | 531 |
| NDRG1 | GDAP1 | Q8TB36 | 527 |
| NDRG1 | FGD4 | Q96M96 | 507 |
| NDRG1 | MTMR2 | Q13614 | 506 |
| NDRG1 | SBF2 | Q86WG5 | 505 |
IntAct
219 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CDH1 | CTNNB1 | psi-mi:“MI:0914”(association) | 0.960 |
| CTNNB1 | CDH1 | psi-mi:“MI:0914”(association) | 0.960 |
| ATP1A1 | ATP1B1 | psi-mi:“MI:0914”(association) | 0.910 |
| ATP1B1 | ATP1A1 | psi-mi:“MI:0914”(association) | 0.910 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| SINHCAF | TNRC18 | psi-mi:“MI:0914”(association) | 0.640 |
| YWHAH | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.610 |
| NDRG1 | ATP1A1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 | |
| NDRG1 | SAP30 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MSRB2 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RYBP | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| TTC33 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPAG8 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| RNF111 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| DCLRE1B | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CSTPP1 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MED28 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| LDHAL6B | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPATA2L | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ZMAT2 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FOXD4L6 | NDRG1 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (505): NDRG1 (Two-hybrid), NDRG1 (Biochemical Activity), NDRG1 (Affinity Capture-MS), NDRG1 (Affinity Capture-MS), NDRG1 (Affinity Capture-MS), DHX15 (Co-fractionation), G6PD (Co-fractionation), GART (Co-fractionation), HIP1R (Co-fractionation), NDRG1 (Co-fractionation), NDRG1 (Co-fractionation), NDRG1 (Co-fractionation), NDRG1 (Co-fractionation), NDRG1 (Co-fractionation), NDRG1 (Co-fractionation)
ESM2 similar proteins: A1L1L6, A2A825, A6QQZ7, A7MB28, A8WGF4, B1H2N3, C7A278, O54956, P11029, P11497, P42694, Q13085, Q28559, Q2HJF8, Q32LU1, Q4R518, Q5FVD6, Q5R8Q7, Q5RA95, Q5SWU9, Q5T2T1, Q5U2Y3, Q5U4X8, Q5XGS8, Q5ZM73, Q5ZM83, Q640Z1, Q66JN8, Q6AYR2, Q6DFV5, Q6DIS1, Q6DJD3, Q6GQK9, Q6NVC5, Q6NWV3, Q6NYU2, Q6P6Q9, Q8BG51, Q8BVD5, Q8IWZ6
Diamond homologs: A5A6K6, A7MB28, Q3SYX0, Q3ZBA8, Q4R4K0, Q4R4Q3, Q55BX3, Q5PR98, Q5RA95, Q5RBN6, Q62433, Q640Z1, Q641F2, Q66IG4, Q66KM2, Q6AYR2, Q6DFS4, Q6DIX1, Q6DJD3, Q6GQL1, Q6JE36, Q7ZWV3, Q7ZY73, Q8BTG7, Q8VBU2, Q92597, Q9ASU8, Q9FJT7, Q9QYF9, Q9QYG0, Q9UGV2, Q9ULP0, Q9UN36, Q9Z2L9, Q9ZUN1, A1AGT6, A1JMX1, A7ZSU1, A8A5M0, A8GCT3
SIGNOR signaling
10 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| TP53 | “up-regulates quantity by expression” | NDRG1 | “transcriptional regulation” |
| NDRG1 | up-regulates | RAB4A | binding |
| SGK1 | down-regulates | NDRG1 | phosphorylation |
| SGK1 | up-regulates | NDRG1 | phosphorylation |
| YBX1 | “up-regulates quantity by expression” | NDRG1 | “transcriptional regulation” |
| PTEN | “up-regulates quantity by expression” | NDRG1 | “transcriptional regulation” |
| SGK3 | “down-regulates activity” | NDRG1 | phosphorylation |
| PIM1 | “down-regulates activity” | NDRG1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 185 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Eukaryotic Translation Elongation | 8 | 16.4× | 8e-07 |
| Eukaryotic Translation Initiation | 7 | 15.9× | 5e-06 |
| Cap-dependent Translation Initiation | 7 | 15.9× | 5e-06 |
| SARS-CoV-1 modulates host translation machinery | 7 | 15.9× | 5e-06 |
| AUF1 (hnRNP D0) binds and destabilizes mRNA | 8 | 14.6× | 2e-06 |
| Formation of the ternary complex, and subsequently, the 43S complex | 9 | 14.3× | 5e-07 |
| Translation initiation complex formation | 10 | 14.0× | 2e-07 |
| Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S | 7 | 14.0× | 1e-05 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| cytoplasmic translation | 12 | 13.2× | 1e-07 |
| translation | 11 | 6.7× | 3e-04 |
| mRNA splicing, via spliceosome | 12 | 6.5× | 2e-04 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
832 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 20 |
| Likely pathogenic | 22 |
| Uncertain significance | 286 |
| Likely benign | 361 |
| Benign | 69 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1073568 | NM_006096.4(NDRG1):c.205+2T>A | Pathogenic |
| 1210121 | NM_006096.4(NDRG1):c.537+2_537+10del | Pathogenic |
| 1323335 | NM_006096.4(NDRG1):c.327-1G>A | Pathogenic |
| 132796 | NG_007943.1:g.(43089_43830)_(47717_51712)dup | Pathogenic |
| 1379001 | NM_006096.4(NDRG1):c.205+1G>T | Pathogenic |
| 1453631 | NC_000008.10:g.(?134292465)(134296564_?)del | Pathogenic |
| 1456322 | NM_006096.4(NDRG1):c.368del (p.Pro123fs) | Pathogenic |
| 1457808 | NC_000008.10:g.(?134260948)(134262796_?)del | Pathogenic |
| 1458165 | NM_006096.4(NDRG1):c.518_521dup (p.Trp175fs) | Pathogenic |
| 1965769 | NM_006096.4(NDRG1):c.641del (p.His214fs) | Pathogenic |
| 218919 | NM_006096.4(NDRG1):c.389+92_594+1717dup | Pathogenic |
| 2816736 | NM_006096.4(NDRG1):c.525G>A (p.Trp175Ter) | Pathogenic |
| 2825304 | NM_006096.4(NDRG1):c.330C>G (p.Tyr110Ter) | Pathogenic |
| 3007519 | NM_006096.4(NDRG1):c.524G>A (p.Trp175Ter) | Pathogenic |
| 3233483 | NM_006096.4(NDRG1):c.580del (p.His194fs) | Pathogenic |
| 3245542 | NC_000008.10:g.(?134296472)(134296554_?)del | Pathogenic |
| 3647432 | NM_006096.4(NDRG1):c.339del (p.Ser114fs) | Pathogenic |
| 3775959 | NM_006096.4(NDRG1):c.390-1G>A | Pathogenic |
| 5120 | NM_006096.4(NDRG1):c.442C>T (p.Arg148Ter) | Pathogenic |
| 845545 | NM_006096.4(NDRG1):c.604C>T (p.Gln202Ter) | Pathogenic |
| 1065993 | NM_006096.4(NDRG1):c.99+1G>A | Likely pathogenic |
| 1347512 | NM_006096.4(NDRG1):c.63+1G>A | Likely pathogenic |
| 1512343 | NM_006096.4(NDRG1):c.808-2A>G | Likely pathogenic |
| 1705646 | NM_006096.4(NDRG1):c.390-2A>G | Likely pathogenic |
| 2126125 | NM_006096.4(NDRG1):c.855+2T>C | Likely pathogenic |
| 2432078 | NM_006096.4(NDRG1):c.259C>T (p.Gln87Ter) | Likely pathogenic |
| 2871907 | NM_006096.4(NDRG1):c.537+1G>T | Likely pathogenic |
| 3362561 | NM_006096.4(NDRG1):c.761del (p.Pro254fs) | Likely pathogenic |
| 3595282 | NM_006096.4(NDRG1):c.892-1G>C | Likely pathogenic |
| 3595284 | NM_006096.4(NDRG1):c.575_591dup (p.Lys198fs) | Likely pathogenic |
SpliceAI
2607 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:133239115:GGGCA:G | acceptor_gain | 1.0000 |
| 8:133239116:GGCA:G | acceptor_gain | 1.0000 |
| 8:133239117:GCA:G | acceptor_gain | 1.0000 |
| 8:133239118:CA:C | acceptor_gain | 1.0000 |
| 8:133239118:CAC:C | acceptor_gain | 1.0000 |
| 8:133239119:AC:A | acceptor_loss | 1.0000 |
| 8:133239120:C:CC | acceptor_gain | 1.0000 |
| 8:133239120:C:CG | acceptor_loss | 1.0000 |
| 8:133242021:A:AC | donor_gain | 1.0000 |
| 8:133242022:C:CC | donor_gain | 1.0000 |
| 8:133242075:C:CC | acceptor_gain | 1.0000 |
| 8:133244352:CACC:C | donor_loss | 1.0000 |
| 8:133244353:A:AC | donor_gain | 1.0000 |
| 8:133244353:A:AG | donor_loss | 1.0000 |
| 8:133244354:C:CA | donor_loss | 1.0000 |
| 8:133244354:C:CC | donor_gain | 1.0000 |
| 8:133244387:CCAT:C | acceptor_gain | 1.0000 |
| 8:133244388:CAT:C | acceptor_gain | 1.0000 |
| 8:133244388:CATC:C | acceptor_gain | 1.0000 |
| 8:133244389:ATC:A | acceptor_loss | 1.0000 |
| 8:133244390:TCTAG:T | acceptor_loss | 1.0000 |
| 8:133244391:C:CC | acceptor_gain | 1.0000 |
| 8:133246615:C:A | donor_loss | 1.0000 |
| 8:133246661:CACCT:C | acceptor_loss | 1.0000 |
| 8:133246663:CCTG:C | acceptor_loss | 1.0000 |
| 8:133246664:C:T | acceptor_loss | 1.0000 |
| 8:133246665:T:G | acceptor_loss | 1.0000 |
| 8:133248713:A:AC | donor_gain | 1.0000 |
| 8:133248713:ACTG:A | donor_gain | 1.0000 |
| 8:133248714:C:CT | donor_gain | 1.0000 |
AlphaMissense
2603 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:133242028:C:T | G313E | 1.000 |
| 8:133242029:C:G | G313R | 1.000 |
| 8:133242029:C:T | G313R | 1.000 |
| 8:133242034:C:A | G311V | 1.000 |
| 8:133242034:C:T | G311D | 1.000 |
| 8:133242035:C:A | G311C | 1.000 |
| 8:133242035:C:G | G311R | 1.000 |
| 8:133242036:C:A | Q310H | 1.000 |
| 8:133242036:C:G | Q310H | 1.000 |
| 8:133242046:T:C | Y307C | 1.000 |
| 8:133242047:A:C | Y307D | 1.000 |
| 8:133242047:A:G | Y307H | 1.000 |
| 8:133242048:C:A | K306N | 1.000 |
| 8:133242048:C:G | K306N | 1.000 |
| 8:133242050:T:C | K306E | 1.000 |
| 8:133242064:A:G | L301P | 1.000 |
| 8:133244368:G:C | P293R | 1.000 |
| 8:133244368:G:T | P293Q | 1.000 |
| 8:133246616:C:A | K285N | 1.000 |
| 8:133246616:C:G | K285N | 1.000 |
| 8:133246620:A:G | L284P | 1.000 |
| 8:133247903:C:A | G260V | 1.000 |
| 8:133247903:C:T | G260E | 1.000 |
| 8:133247904:C:A | G260W | 1.000 |
| 8:133247904:C:G | G260R | 1.000 |
| 8:133247904:C:T | G260R | 1.000 |
| 8:133247915:A:G | L256P | 1.000 |
| 8:133256787:G:T | A176D | 1.000 |
| 8:133256800:A:G | W172R | 1.000 |
| 8:133256800:A:T | W172R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000010317 (8:133258129 C>T), RS1000043112 (8:133285017 G>A,C), RS1000223953 (8:133295717 A>C,G), RS1000246880 (8:133251581 A>G), RS1000276521 (8:133288745 C>T), RS1000303271 (8:133278274 T>A), RS1000309143 (8:133289098 G>T), RS1000341477 (8:133262864 G>A,T), RS1000401313 (8:133273041 G>A), RS1000431449 (8:133251841 G>C), RS1000468158 (8:133284685 C>T), RS1000534902 (8:133246266 G>A), RS1000541144 (8:133294374 G>A,C), RS1000606449 (8:133278542 C>A,T), RS1000657756 (8:133298625 C>T)
Disease associations
OMIM: gene MIM:605262 | disease phenotypes: MIM:601455, MIM:118220
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Charcot-Marie-Tooth disease type 4D | Definitive | Autosomal recessive |
Mondo (3): Charcot-Marie-Tooth disease type 4D (MONDO:0011085), Charcot-Marie-Tooth disease type 4 (MONDO:0018995), Charcot-Marie-Tooth disease (MONDO:0015626)
Orphanet (3): Charcot-Marie-Tooth disease type 4 (Orphanet:64749), Charcot-Marie-Tooth disease type 4D (Orphanet:99950), Charcot-Marie-Tooth disease/Hereditary motor and sensory neuropathy (Orphanet:166)
HPO phenotypes
70 total (30 of 70 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000232 | Everted lower lip vermilion |
| HP:0000248 | Brachycephaly |
| HP:0000252 | Microcephaly |
| HP:0000358 | Posteriorly rotated ears |
| HP:0000365 | Hearing impairment |
| HP:0000369 | Low-set ears |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000431 | Wide nasal bridge |
| HP:0000501 | Glaucoma |
| HP:0000545 | Myopia |
| HP:0000649 | Abnormality of visual evoked potentials |
| HP:0000687 | Widely spaced teeth |
| HP:0000762 | Decreased nerve conduction velocity |
| HP:0000958 | Dry skin |
| HP:0000964 | Eczematoid dermatitis |
| HP:0001171 | Split hand |
| HP:0001250 | Seizure |
| HP:0001257 | Spasticity |
| HP:0001265 | Hyporeflexia |
| HP:0001270 | Motor delay |
| HP:0001284 | Areflexia |
| HP:0001288 | Gait disturbance |
| HP:0001508 | Failure to thrive |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001760 | Abnormal foot morphology |
| HP:0001761 | Pes cavus |
| HP:0001762 | Talipes equinovarus |
| HP:0001765 | Hammertoe |
| HP:0001890 | Autoimmune hemolytic anemia |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002037_5 | Post-traumatic stress disorder (asjusted for relatedness) | 3.000000e-06 |
| GCST005590_1 | Nontyphoidal Salmonella bacteraemia | 2.000000e-07 |
| GCST007876_108 | Estimated glomerular filtration rate | 2.000000e-08 |
| GCST90013421_40 | Left-handedness | 2.000000e-14 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009087 | non-typhoidal Salmonella bacteremia |
| EFO:0009902 | handedness |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002607 | Charcot-Marie-Tooth Disease | C10.500.300.200; C10.574.500.495.200; C10.668.829.800.300.200; C16.131.666.300.200; C16.320.400.375.200 |
| C535716 | Neuropathy, hereditary motor and sensory, LOM type (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295916 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs2272653 | NDRG1 | 0.00 | 0 |
CTD chemical–gene interactions
193 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Oxygen | decreases reaction, increases expression, increases reaction, affects reaction, affects cotreatment (+1 more) | 10 |
| cobaltous chloride | decreases reaction, affects localization, increases expression | 9 |
| bisphenol A | decreases expression, increases expression, affects expression | 6 |
| nickel chloride | affects cotreatment, increases expression | 6 |
| sodium arsenite | increases phosphorylation, decreases expression, increases expression, increases methylation, decreases reaction | 5 |
| Tretinoin | affects cotreatment, decreases expression, increases expression | 5 |
| Particulate Matter | increases abundance, increases expression, affects cotreatment, decreases expression | 4 |
| (+)-JQ1 compound | increases expression, decreases reaction | 3 |
| Air Pollutants | increases expression, decreases expression, affects cotreatment, increases abundance, increases oxidation | 3 |
| Cisplatin | increases expression, affects expression | 3 |
| Estradiol | affects cotreatment, decreases expression, increases expression | 3 |
| Tetrachlorodibenzodioxin | affects cotreatment, decreases expression, increases expression | 3 |
| Tunicamycin | increases phosphorylation, affects expression, increases expression, decreases reaction | 3 |
| Valproic Acid | increases expression | 3 |
| Cadmium Chloride | decreases reaction, increases abundance, increases phosphorylation, increases expression | 3 |
| nickel sulfate | increases expression, decreases reaction | 2 |
| cadmium sulfate | increases expression | 2 |
| bisphenol S | decreases expression, affects cotreatment, increases expression | 2 |
| Decitabine | affects expression, increases expression | 2 |
| Arsenic Trioxide | affects cotreatment, decreases expression, increases expression | 2 |
| Troglitazone | affects cotreatment, increases expression, decreases reaction | 2 |
| Acetaminophen | increases expression | 2 |
| Ethanol | affects cotreatment, increases expression, increases abundance | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation, increases expression | 2 |
| Cobalt | increases reaction, increases expression | 2 |
| Copper | decreases response to substance, increases expression, affects binding | 2 |
| Deferoxamine | increases expression, decreases response to substance | 2 |
| Hydrogen Peroxide | affects expression, decreases expression | 2 |
| Nickel | increases expression, increases reaction | 2 |
| Phenylmercuric Acetate | affects cotreatment, increases expression | 2 |
ChEMBL screening assays
4 unique, capped per target: 4 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4230157 | Binding | Inhibition of NDRG1 (unknown origin) at 1 uM by mobility shift microfluidics platform based assay relative to control | Effects of rigidity on the selectivity of protein kinase inhibitors. — Eur J Med Chem |
Cellosaurus cell lines
4 cell lines: 2 transformed cell line, 2 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1B8 | Abcam HEK293 NDRG1 KO | Transformed cell line | Female |
| CVCL_B1CS | Abcam A-431 NDRG1 KO | Cancer cell line | Female |
| CVCL_B3BZ | Abcam HEK293T NDRG1 KO | Transformed cell line | Female |
| CVCL_D7VL | Ubigene A-549 NDRG1 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
59 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04762758 | PHASE3 | UNKNOWN | Phase III Trial Assessing the Efficacy and Safety of PXT3003 in CMT1A Patients |
| NCT00271635 | PHASE2 | COMPLETED | Ascorbic Acid Treatment in CMT1A Trial (AATIC) |
| NCT01401257 | PHASE2 | COMPLETED | Phase II, Randomized, Placebo-controlled Trial in Patients With Charcot-marie-tooth Disease Type 1A |
| NCT02561702 | PHASE2 | COMPLETED | Mexiletine for Muscle Cramps in Charcot Marie Tooth Disease |
| NCT02967679 | PHASE2 | COMPLETED | SERENDEM : MD1003 in Patients Suffering From Demyelinating Neuropathies, an Open Label Pilot Study |
| NCT03124459 | PHASE2 | TERMINATED | Study of ACE-083 in Patients With Charcot-Marie-Tooth Disease |
| NCT03254199 | PHASE2 | TERMINATED | A Study to Assess the Safety and Effectiveness of FLX-787 in Subjects With Charcot-Marie-Tooth Disease Experiencing Muscle Cramps. |
| NCT03943290 | PHASE2 | TERMINATED | Extension Study to Evaluate the Long-Term Effects of ACE-083 in Patients With Facioscapulohumeral Muscular Dystrophy (FSHD) and Charcot-Marie Tooth (CMT) Disease Types 1 and X (CMT1 and CMTX) |
| NCT05777226 | PHASE2 | UNKNOWN | Research of SORD-CMT Natural History and Epalrestat Treatment |
| NCT06482437 | PHASE2 | COMPLETED | Safety and Efficacy of NMD670 in Adult Patients With Type 1 and Type 2 Charcot-Marie-Tooth Disease |
| NCT05902351 | Not specified | RECRUITING | Natural History Study for Charcot Marie Tooth Disease |
| NCT01289704 | PHASE2/PHASE3 | UNKNOWN | Treadmill, Stretching and Proprioceptive Exercise (TreSPE) Rehabilitation Program for Charcot-Marie-Tooth Neuropathy Type 1A (CMT1A) |
| NCT00541164 | PHASE1/PHASE2 | COMPLETED | Effects of Coenzyme Q10 on Charcot-Marie-Tooth Disease |
| NCT05361031 | PHASE1/PHASE2 | COMPLETED | The Safety and Tolerability of Engensis (VM202) in Patients With Charcot-Marie-Tooth Disease Subtype 1A (CMT1A) |
| NCT07223632 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Treatment of Charcot-Marie-Tooth Disease, Axonal, Type 2S (CMT2S) in an Individual Patient |
| NCT00149045 | Not specified | COMPLETED | Follow up and Observation of Charcot Marie Tooth Disease in Families |
| NCT01193075 | Not specified | RECRUITING | Natural History Evaluation of Charcot Marie Tooth Disease (CMT) Types CMT1B, CMT2A, CMT4A, CMT4C, and Others |
| NCT01203085 | Not specified | COMPLETED | Development of Charcot Marie Tooth Disease (CMT) Pediatric Scale for Children With CMT |
| NCT01455623 | Not specified | COMPLETED | Development and Validation of a Disability Severity Index for CMT |
| NCT01918826 | Not specified | UNKNOWN | Evaluation of the Analgesic Efficiency of the Transcutaneous Neurostimulation in the Charcot Syndrome Marie Tooth on the Pains of Lower Limbs |
| NCT02001038 | Not specified | COMPLETED | Survey of Current Management of Orthopaedic Complications in CMT Patients |
| NCT02011204 | Not specified | COMPLETED | Study of Electrical Impedance Myography (EIM) in ALS |
| NCT02194010 | Not specified | COMPLETED | Disability Severity Scale (DSI) and Hereditary Motor and Sensory Neuropathy Overall Disability Scale (HMSN-R-ODS) |
| NCT02429947 | Not specified | COMPLETED | An Analysis of the Symptomatic Domains Most Relevant to Charcot Marie Tooth Neuropathy (CMT) Patients |
| NCT02532244 | Not specified | COMPLETED | Genetics of Pediatric-Onset Motor Neuron and Neuromuscular Diseases |
| NCT02699190 | Not specified | COMPLETED | LeukoSEQ: Whole Genome Sequencing as a First-Line Diagnostic Tool for Leukodystrophies |
| NCT02788734 | Not specified | COMPLETED | Patient Reported Outcomes Measures (PROM) in Carpal Tunnel Therapies in Patients With Inherited Neuropathies |
| NCT02979145 | Not specified | UNKNOWN | Charcot-Marie-Tooth Disease (CMT) Infant Scale (INC-6611) |
| NCT03047369 | Not specified | RECRUITING | The Myelin Disorders Biorepository Project |
| NCT03460951 | Not specified | COMPLETED | Diffusion Tensor Imaging in Chronic Inflammatory Demyelinating Polyneuropathy (PIDC) |
| NCT03715283 | Not specified | COMPLETED | Change in MUNIX in Patients With CMT1A Undergoing a Home Ankle Strengthening Program Versus Standard of Care |
| NCT03782883 | Not specified | COMPLETED | The Impact of Charcot-Marie-Tooth Disease in the Real World |
| NCT03810508 | Not specified | TERMINATED | A Natural History Study of Charcot-Marie-Tooth 4J (CMT4J) |
| NCT03966287 | Not specified | COMPLETED | Analysis of Pain and Quality of Life in Patients With Charcot-Marie-Tooth Neuropathy (CMT) |
| NCT04010188 | Not specified | RECRUITING | A Registered Cohort Study on Charcot-Marie-Tooth Disease |
| NCT04283175 | Not specified | COMPLETED | Validation Study of Posturology Platforms for Evaluating Postural Control of Hemiparetic and Neuro-muscular Patients |
| NCT04461613 | Not specified | UNKNOWN | Physical Activity in Persons With Charcot-Marie-Tooth: Developing a Measurement Instrument |
| NCT04786522 | Not specified | COMPLETED | Irisin Levels in Patients With Charcot-Marie-Tooth (CMT) Disease |
| NCT04967716 | Not specified | UNKNOWN | Genetics of Charcot-Marie-Tooth Dystrophy and Related Diseases |
| NCT04980807 | Not specified | COMPLETED | Observational Study of Neuromuscular Function in CMT Type 1&2 and Healthy Controls |
Related Atlas pages
- Associated diseases: Charcot-Marie-Tooth disease type 4D
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Charcot-Marie-Tooth disease type 4, Charcot-Marie-Tooth disease type 4D, post-traumatic stress disorder