NDUFS1
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Also known as CI-75k
Summary
NDUFS1 (NADH:ubiquinone oxidoreductase core subunit S1, HGNC:7707) is a protein-coding gene on chromosome 2q33.3, encoding NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial (P28331). Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor. It is a selective cancer dependency (DepMap: 37.3% of cell lines).
The protein encoded by this gene belongs to the complex I 75 kDa subunit family. Mammalian complex I is composed of 45 different subunits. It locates at the mitochondrial inner membrane. This protein has NADH dehydrogenase activity and oxidoreductase activity. It transfers electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. This protein is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. It may form part of the active site crevice where NADH is oxidized. Mutations in this gene are associated with complex I deficiency. Several transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 4719 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial disease (Definitive, ClinGen) — +4 more curated relationships
- GWAS associations: 5
- Clinical variants (ClinVar): 505 total — 15 pathogenic, 30 likely-pathogenic
- Phenotypes (HPO): 62
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 37.3% of screened cell lines
- MANE Select transcript:
NM_005006
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7707 |
| Approved symbol | NDUFS1 |
| Name | NADH:ubiquinone oxidoreductase core subunit S1 |
| Location | 2q33.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CI-75k |
| Ensembl gene | ENSG00000023228 |
| Ensembl biotype | protein_coding |
| OMIM | 157655 |
| Entrez | 4719 |
Gene structure
Transcript identifiers
Ensembl transcripts: 33 — 31 protein_coding, 1 nonsense_mediated_decay, 1 retained_intron
ENST00000233190, ENST00000423725, ENST00000432169, ENST00000440274, ENST00000449699, ENST00000454195, ENST00000456284, ENST00000457011, ENST00000498520, ENST00000903700, ENST00000903701, ENST00000903702, ENST00000903703, ENST00000903704, ENST00000903705, ENST00000903706, ENST00000903707, ENST00000903708, ENST00000903709, ENST00000938122, ENST00000938123, ENST00000938124, ENST00000948898, ENST00000948899, ENST00000948900, ENST00000948901, ENST00000948902, ENST00000948903, ENST00000948904, ENST00000948905, ENST00000948906, ENST00000948907, ENST00000948908
RefSeq mRNA: 5 — MANE Select: NM_005006
NM_001199981, NM_001199982, NM_001199983, NM_001199984, NM_005006
CCDS: CCDS2366, CCDS56162, CCDS56163, CCDS56164
Canonical transcript exons
ENST00000233190 — 19 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000469822 | 206142686 | 206142831 |
| ENSE00000469824 | 206138485 | 206138614 |
| ENSE00000784947 | 206126539 | 206126611 |
| ENSE00000784948 | 206126710 | 206126844 |
| ENSE00000784949 | 206127797 | 206127972 |
| ENSE00000784951 | 206132945 | 206133105 |
| ENSE00000784953 | 206141941 | 206142069 |
| ENSE00000784955 | 206144018 | 206144132 |
| ENSE00000784956 | 206144892 | 206145026 |
| ENSE00000784957 | 206146903 | 206147088 |
| ENSE00000784958 | 206147531 | 206147661 |
| ENSE00000796659 | 206152419 | 206152510 |
| ENSE00001366685 | 206159341 | 206159444 |
| ENSE00001840375 | 206114817 | 206124276 |
| ENSE00003559678 | 206149818 | 206149925 |
| ENSE00003598955 | 206153618 | 206153682 |
| ENSE00003625672 | 206130088 | 206130242 |
| ENSE00003657299 | 206149020 | 206149096 |
| ENSE00003678234 | 206147753 | 206147834 |
Expression profiles
Bgee: expression breadth ubiquitous, 142 present calls, max score 98.69.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 49.3791 / max 664.7939, expressed in 1812 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 33353 | 46.7844 | 1811 |
| 33354 | 1.2637 | 869 |
| 33352 | 1.1954 | 705 |
| 33351 | 0.1355 | 51 |
Top tissues by expression
142 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| corpus callosum | UBERON:0002336 | 98.69 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.35 | gold quality |
| adrenal tissue | UBERON:0018303 | 98.31 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 98.10 | gold quality |
| muscle of leg | UBERON:0001383 | 98.09 | gold quality |
| gastrocnemius | UBERON:0001388 | 98.05 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.00 | gold quality |
| heart left ventricle | UBERON:0002084 | 97.81 | gold quality |
| apex of heart | UBERON:0002098 | 97.42 | gold quality |
| right atrium auricular region | UBERON:0006631 | 97.11 | gold quality |
| muscle tissue | UBERON:0002385 | 96.83 | gold quality |
| islet of Langerhans | UBERON:0000006 | 96.81 | gold quality |
| heart | UBERON:0000948 | 96.79 | gold quality |
| rectum | UBERON:0001052 | 96.66 | gold quality |
| right adrenal gland | UBERON:0001233 | 96.33 | gold quality |
| adrenal gland | UBERON:0002369 | 96.09 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 95.97 | gold quality |
| duodenum | UBERON:0002114 | 95.96 | gold quality |
| left adrenal gland | UBERON:0001234 | 95.94 | gold quality |
| calcaneal tendon | UBERON:0003701 | 95.29 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 95.23 | gold quality |
| colonic epithelium | UBERON:0000397 | 94.93 | gold quality |
| tonsil | UBERON:0002372 | 94.56 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 94.44 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 94.43 | gold quality |
| prefrontal cortex | UBERON:0000451 | 94.30 | gold quality |
| liver | UBERON:0002107 | 94.24 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 94.14 | gold quality |
| kidney | UBERON:0002113 | 94.04 | gold quality |
| ventricular zone | UBERON:0003053 | 93.43 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6379 | no | 1375.62 |
| E-MTAB-6386 | no | 160.13 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
46 targeting NDUFS1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-5692A | 100.00 | 74.40 | 6850 |
| HSA-MIR-4713-3P | 100.00 | 65.92 | 505 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-607 | 99.97 | 73.62 | 5593 |
| HSA-MIR-302C-5P | 99.97 | 72.56 | 3642 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-3671 | 99.90 | 73.04 | 3897 |
| HSA-MIR-627-3P | 99.90 | 71.42 | 3316 |
| HSA-MIR-153-5P | 99.89 | 73.86 | 6317 |
| HSA-MIR-3941 | 99.86 | 70.54 | 2735 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-8084 | 99.73 | 69.57 | 1760 |
| HSA-MIR-545-5P | 99.66 | 70.18 | 2308 |
| HSA-MIR-5700 | 99.64 | 69.88 | 2280 |
| HSA-MIR-451B | 99.55 | 68.28 | 1380 |
| HSA-MIR-1252-3P | 99.55 | 67.71 | 2862 |
| HSA-MIR-4735-5P | 99.43 | 68.49 | 1780 |
| HSA-MIR-4666A-5P | 99.41 | 69.72 | 1887 |
| HSA-MIR-32-3P | 99.36 | 68.20 | 2517 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 37.3% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 21)
- A patient with Leigh syndrome had a mutation in the NDUFS1 protein of Complex I of the Respiratory Chain. Identifying nuclear mutations will help us understand how molecular defects can lead to complex I deficiency. (PMID:15824269)
- mutations in the NDUFS1 and NDUFS4 genes of complex I cause dysfunction in cellular oxidative metabolism (PMID:16478720)
- This protein has been found differentially expressed in the Wernicke’s Area from patients with schizophrenia. (PMID:19405953)
- Mutations in electron Transport Complex I is associated with Leber hereditary optic neuropathy failing to compensate for impaired oxidative phosphorylation. (PMID:19836344)
- report 3 patients with low residual complex I activity who displayed novel mutations in the NDUFS1 gene. One mutation introduces a premature stop codon, 3 mutations cause a substitution of amino acids and another mutation a deletion of one amino acid. (PMID:20382551)
- data suggest that gamma oscillations are especially energy demanding and require both high complex I expression and strong functional performance of mitochondria. (PMID:21183487)
- homozygous c.1783A>G (p.Thr595Ala) mutation in NDUFS1 in two inbred siblings with isolated complex I deficiency associated to a progressive cavitating leukoencephalopathy (PMID:21203893)
- The peripheral leukocyte oxidative phosphorylation enzyme activity assay was found to be a reliable method for the diagnosis of mitochondrial diseases. (PMID:21540367)
- A protein encoded by this locus was found to be differentially expressed in postmortem brains from patients with atypical frontotemporal lobar degeneration. (PMID:22360420)
- Some mutations in NDUFS1 cause a milder phenotype with a more benign course despite the initial decompensation phase. Homozygosity for the c.755A > G missense mutation may correlate with the milder clinical picture in the patient. (PMID:24952175)
- NDUFS1 may confer susceptibility to schizophrenia in male subjects, acting as a causative factor for the severity of negative symptoms in schizophrenia. (PMID:25354934)
- The presented clinical courses of NDUFV1 and NDUFS1 mutation-based complex I deficiencies are characterized by leukoencephalopathy or early death and expand the already heterogeneous phenotypic spectrum. (PMID:25615419)
- Results found nominal significant associations of 2 SNPs in the NDUFS1 gene and 4 SNPs in the NDUFS2 gene with early onset schizophrenia (EOS), but none of these associations survived the Bonferroni correction. (PMID:26053550)
- Loss of FOXRED1, coupled with protein, choline and/or folate-deficient diets results in the depletion of glutathione, the dysregulation of nitric oxide metabolism and the peroxynitrite-mediated inactivation of complex I. (PMID:26235939)
- High NDUFS1 expression is associated with cognitive impairment in lung cancer. (PMID:26987334)
- Results show that NDUFS1 protein and mRNA levels are down-regulated in lung neoplasm and correlate with poor overall survival. (PMID:27516145)
- MDM2 directly binds and sequesters NDUFS1, preventing its mitochondrial localization and ultimately causing complex I and supercomplex destabilization and inefficiency of oxidative phosphorylation. (PMID:30879903)
- The biallelic mutations in NDUFS1 led to a decreased stability of the entire N-module of electron transport complex I and disrupted the electron transfer between two iron-sulfur clusters. (PMID:31557978)
- Down regulation of NDUFS1 is involved in the progression of parenteral-nutrition-associated liver disease by increasing Oxidative stress. (PMID:36402252)
- PHB2 promotes colorectal cancer cell proliferation and tumorigenesis through NDUFS1-mediated oxidative phosphorylation. (PMID:36658121)
- Association between NDUFS1 from urinary extracellular vesicles and decreased differential renal function in children with ureteropelvic junction obstruction. (PMID:38720274)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ndufs1 | ENSDARG00000028546 |
| mus_musculus | Ndufs1 | ENSMUSG00000025968 |
| rattus_norvegicus | Ndufs1 | ENSRNOG00000011849 |
| drosophila_melanogaster | ND-75 | FBGN0017566 |
| caenorhabditis_elegans | WBGENE00021562 |
Paralogs (2): CIAO3 (ENSG00000103245), NARF (ENSG00000141562)
Protein
Protein identifiers
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial — P28331 (reviewed: P28331)
Alternative names: Complex I-75kD
All UniProt accessions (5): B4DJ81, C9JPQ5, E5KRK5, P28331, F8WDL5
UniProt curated annotations — full annotation on UniProt →
Function. Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor. Essential for catalysing the entry and efficient transfer of electrons within complex I. Plays a key role in the assembly and stability of complex I and participates in the association of complex I with ubiquinol-cytochrome reductase complex (Complex III) to form supercomplexes.
Subunit / interactions. Core subunit of respiratory chain NADH dehydrogenase (Complex I) which is composed of 45 different subunits. This is the largest subunit of complex I and it is a component of the iron-sulfur (IP) fragment of the enzyme. Complex I associates with ubiquinol-cytochrome reductase complex (Complex III) to form supercomplexes. Interacts with MDM2. Interacts with AKAP1.
Subcellular location. Mitochondrion inner membrane.
Disease relevance. Mitochondrial complex I deficiency, nuclear type 5 (MC1DN5) [MIM:618226] A form of mitochondrial complex I deficiency, the most common biochemical signature of mitochondrial disorders, a group of highly heterogeneous conditions characterized by defective oxidative phosphorylation, which collectively affects 1 in 5-10000 live births. Clinical disorders have variable severity, ranging from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease. MC1DN5 transmission pattern is consistent with autosomal recessive inheritance. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 [2Fe-2S] cluster per subunit. Binds 2 [4Fe-4S] clusters per subunit.
Similarity. Belongs to the complex I 75 kDa subunit family.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P28331-1 | 1 | yes |
| P28331-2 | 2 | |
| P28331-3 | 3 | |
| P28331-4 | 4 | |
| P28331-5 | 5 |
RefSeq proteins (5): NP_001186910, NP_001186911, NP_001186912, NP_001186913, NP_004997* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000283 | NADH_UbQ_OxRdtase_75kDa_su_CS | Conserved_site |
| IPR001041 | 2Fe-2S_ferredoxin-type | Domain |
| IPR006656 | Mopterin_OxRdtase | Domain |
| IPR006963 | Mopterin_OxRdtase_4Fe-4S_dom | Domain |
| IPR010228 | NADH_UbQ_OxRdtase_Gsu | Family |
| IPR015405 | NDUFS1-like_C | Domain |
| IPR019574 | NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd | Domain |
| IPR036010 | 2Fe-2S_ferredoxin-like_sf | Homologous_superfamily |
| IPR050123 | ||
| IPR054351 | NADH_UbQ_OxRdtase_ferredoxin | Domain |
Pfam: PF00384, PF09326, PF10588, PF13510, PF22117, PF22151
Catalyzed reactions (Rhea), 1 shown:
- a ubiquinone + NADH + 5 H(+)(in) = a ubiquinol + NAD(+) + 4 H(+)(out) (RHEA:29091)
UniProt features (92 total): helix 27, strand 19, binding site 12, turn 10, sequence variant 6, splice variant 5, modified residue 4, sequence conflict 4, domain 3, transit peptide 1, chain 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9I4I | ELECTRON MICROSCOPY | 2.63 |
| 9TI4 | ELECTRON MICROSCOPY | 2.66 |
| 5XTB | ELECTRON MICROSCOPY | 3.4 |
| 9CWT | ELECTRON MICROSCOPY | 3.44 |
| 5XTD | ELECTRON MICROSCOPY | 3.7 |
| 5XTH | ELECTRON MICROSCOPY | 3.9 |
| 5XTI | ELECTRON MICROSCOPY | 17.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P28331-F1 | 92.97 | 0.90 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (12): 128; 131; 137; 176; 179; 182; 226; 64; 75; 78; 92; 124
Post-translational modifications (4): 84, 467, 499, 709
Function
Pathways and Gene Ontology
Reactome pathways
6 pathways
| ID | Pathway |
|---|---|
| R-HSA-611105 | Respiratory electron transport |
| R-HSA-6799198 | Complex I biogenesis |
| R-HSA-9837999 | Mitochondrial protein degradation |
| R-HSA-1428517 | Aerobic respiration and respiratory electron transport |
| R-HSA-1430728 | Metabolism |
| R-HSA-392499 | Metabolism of proteins |
MSigDB gene sets: 354 (showing top):
GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, GSE45365_CTRL_VS_MCMV_INFECTION_NK_CELL_DN, MORF_MBD4, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY, MORF_RAD21, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, RODWELL_AGING_KIDNEY_NO_BLOOD_DN, GOBP_MONOATOMIC_CATION_TRANSPORT, COUP_01, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, OUELLET_OVARIAN_CANCER_INVASIVE_VS_LMP_UP
GO Biological Process (7): mitochondrial electron transport, NADH to ubiquinone (GO:0006120), aerobic respiration (GO:0009060), mitochondrial respiratory chain complex I assembly (GO:0032981), proton motive force-driven mitochondrial ATP synthesis (GO:0042776), cellular respiration (GO:0045333), ATP synthesis coupled electron transport (GO:0042773), proton transmembrane transport (GO:1902600)
GO Molecular Function (9): NADH dehydrogenase (ubiquinone) activity (GO:0008137), electron transfer activity (GO:0009055), oxidoreductase activity, acting on NAD(P)H (GO:0016651), metal ion binding (GO:0046872), 2 iron, 2 sulfur cluster binding (GO:0051537), 4 iron, 4 sulfur cluster binding (GO:0051539), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), iron-sulfur cluster binding (GO:0051536)
GO Cellular Component (7): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial intermembrane space (GO:0005758), mitochondrial matrix (GO:0005759), respiratory chain complex I (GO:0045271), membrane (GO:0016020), mitochondrial membrane (GO:0031966)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Aerobic respiration and respiratory electron transport | 1 |
| Respiratory electron transport | 1 |
| Metabolism of proteins | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| mitochondrion | 3 |
| oxidative phosphorylation | 2 |
| iron-sulfur cluster binding | 2 |
| mitochondrial envelope | 2 |
| aerobic electron transport chain | 1 |
| mitochondrial ATP synthesis coupled electron transport | 1 |
| cellular respiration | 1 |
| NADH dehydrogenase complex assembly | 1 |
| mitochondrial respiratory chain complex assembly | 1 |
| proton motive force-driven ATP synthesis | 1 |
| energy derivation by oxidation of organic compounds | 1 |
| respiratory electron transport chain | 1 |
| monoatomic cation transmembrane transport | 1 |
| NADH dehydrogenase activity | 1 |
| electron transfer activity | 1 |
| proton transmembrane transporter activity | 1 |
| oxidoreduction-driven active transmembrane transporter activity | 1 |
| oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1 |
| active monoatomic ion transmembrane transporter activity | 1 |
| molecular_function | 1 |
| oxidoreductase activity | 1 |
| cation binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| metal cluster binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| organelle envelope lumen | 1 |
| intracellular organelle lumen | 1 |
| NADH dehydrogenase complex | 1 |
| respiratory chain complex | 1 |
| transmembrane transporter complex | 1 |
| cellular anatomical structure | 1 |
| organelle membrane | 1 |
Protein interactions and networks
STRING
3164 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NDUFS1 | NDUFV2 | P19404 | 999 |
| NDUFS1 | NDUFV1 | P49821 | 999 |
| NDUFS1 | NDUFS2 | O75306 | 998 |
| NDUFS1 | NDUFS3 | O75489 | 996 |
| NDUFS1 | NDUFS7 | O75251 | 995 |
| NDUFS1 | NDUFS8 | O00217 | 994 |
| NDUFS1 | NDUFA2 | O43678 | 989 |
| NDUFS1 | NDUFS6 | O75380 | 985 |
| NDUFS1 | NDUFS4 | O43181 | 984 |
| NDUFS1 | NDUFA5 | Q16718 | 946 |
| NDUFS1 | NDUFA9 | Q16795 | 934 |
| NDUFS1 | NDUFV3 | P56181 | 931 |
| NDUFS1 | NDUFA6 | P56556 | 920 |
| NDUFS1 | NDUFS5 | O43920 | 903 |
| NDUFS1 | NDUFA12 | Q9UI09 | 885 |
IntAct
207 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NDUFAF1 | NDUFS3 | psi-mi:“MI:0914”(association) | 0.790 |
| NDUFS3 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.730 |
| NDUFV2 | NDUFS2 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| NDUFS7 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFS6 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| CCDC120 | AIP | psi-mi:“MI:0914”(association) | 0.640 |
| HOXC9 | AHCYL1 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFA9 | NDUFS4 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFS5 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.530 |
| NDUFA9 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.530 |
| NDUFA8 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.530 |
| NDUFV2 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.530 |
| PML | NDUFA2 | psi-mi:“MI:0914”(association) | 0.530 |
| DNAJC30 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (528): NDUFS1 (Affinity Capture-MS), NDUFS1 (Affinity Capture-MS), NDUFS1 (Affinity Capture-MS), NDUFS1 (Affinity Capture-MS), AFG3L2 (Co-fractionation), ATP1A1 (Co-fractionation), ATP6V0D1 (Co-fractionation), CLTC (Co-fractionation), GNB2 (Co-fractionation), COX2 (Co-fractionation), ND1 (Co-fractionation), NDUFA9 (Co-fractionation), NDUFS1 (Co-fractionation), NDUFS1 (Co-fractionation), NDUFS1 (Co-fractionation)
ESM2 similar proteins: A2TLM1, A2ZLS4, B4G0F3, B8BKI7, B9N1F9, B9SQI7, C6JS30, O04059, O04397, P0CB67, P0CB68, P0DPI2, P13653, P15690, P19356, P22907, P28331, P31166, P41345, P46225, P47968, P49085, Q0MQG1, Q0MQG2, Q27601, Q2QNF7, Q2R483, Q39161, Q41578, Q42850, Q42997, Q43654, Q4R6K9, Q5NAY4, Q66HF1, Q69QJ7, Q6AV34, Q6EI12, Q7XKF3, Q8W3D9
Diamond homologs: A0A1D8PU51, I3R634, O21241, O52683, P0CB67, P0CB68, P15690, P24918, P28331, P29915, P39458, P42434, P59962, P61159, P73448, P86203, P9WIV8, P9WIV9, Q06457, Q0MQG1, Q0MQG2, Q1RKD2, Q2LCP5, Q34312, Q37373, Q43644, Q46508, Q4R6K9, Q4UK22, Q66HF1, Q68VV2, Q6LXQ1, Q91VD9, Q92G92, Q94511, Q9FGI6, Q9XAR0, Q9ZCF6, D7AF63, F1SVN3
SIGNOR signaling
2 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| metformin | “down-regulates activity” | NDUFS1 | “chemical inhibition” |
| NDUFS1 | “form complex” | “NADH-ubiquinone oxidoreductase-Mitochondrial respiratory chain complex I” | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 189 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Complex I biogenesis | 25 | 32.6× | 2e-29 |
| Respiratory electron transport | 27 | 20.2× | 7e-26 |
| Aerobic respiration and respiratory electron transport | 25 | 17.4× | 3e-22 |
| Mitochondrial protein degradation | 15 | 13.5× | 4e-11 |
| Complex IV assembly | 7 | 12.6× | 1e-04 |
| Mitochondrial protein import | 6 | 7.9× | 8e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitochondrial electron transport, NADH to ubiquinone | 21 | 46.8× | 6e-28 |
| proton motive force-driven mitochondrial ATP synthesis | 23 | 37.6× | 6e-28 |
| aerobic respiration | 22 | 33.9× | 1e-25 |
| mitochondrial respiratory chain complex I assembly | 12 | 30.6× | 8e-13 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
505 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 15 |
| Likely pathogenic | 30 |
| Uncertain significance | 203 |
| Likely benign | 122 |
| Benign | 65 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 14230 | NM_005006.7(NDUFS1):c.666_668del (p.Ile223del) | Pathogenic |
| 14231 | NM_005006.7(NDUFS1):c.755A>G (p.Asp252Gly) | Pathogenic |
| 1451930 | NM_005006.7(NDUFS1):c.673dup (p.Ile225fs) | Pathogenic |
| 1453980 | NM_005006.7(NDUFS1):c.1070del (p.Leu357fs) | Pathogenic |
| 1897450 | NM_005006.7(NDUFS1):c.29_42del (p.Ala9_Leu10insTer) | Pathogenic |
| 2049239 | NM_005006.7(NDUFS1):c.1255C>T (p.Arg419Ter) | Pathogenic |
| 214780 | NM_005006.7(NDUFS1):c.699_700del (p.Lys234fs) | Pathogenic |
| 2708405 | NM_005006.7(NDUFS1):c.1564C>T (p.Gln522Ter) | Pathogenic |
| 2895765 | NM_005006.7(NDUFS1):c.1963C>T (p.Arg655Ter) | Pathogenic |
| 3254827 | NM_005006.7(NDUFS1):c.1880_1881del (p.Leu626_Ser627insTer) | Pathogenic |
| 3681358 | NM_005006.7(NDUFS1):c.1589_1596del (p.Tyr530fs) | Pathogenic |
| 3896664 | NM_005006.7(NDUFS1):c.2029C>T (p.Gln677Ter) | Pathogenic |
| 50922 | NM_005006.7(NDUFS1):c.1855G>A (p.Asp619Asn) | Pathogenic |
| 50923 | NM_005006.7(NDUFS1):c.1669C>T (p.Arg557Ter) | Pathogenic |
| 626277 | NM_005006.7(NDUFS1):c.64C>T (p.Arg22Ter) | Pathogenic |
| 1193648 | NM_005006.7(NDUFS1):c.62-2A>G | Likely pathogenic |
| 1324785 | NM_005006.7(NDUFS1):c.1810C>T (p.Gln604Ter) | Likely pathogenic |
| 1506164 | NM_005006.7(NDUFS1):c.338+1G>A | Likely pathogenic |
| 1804014 | NM_005006.7(NDUFS1):c.988-2A>C | Likely pathogenic |
| 1879518 | NM_005006.7(NDUFS1):c.228G>T (p.Arg76Ser) | Likely pathogenic |
| 190449 | NM_005006.7(NDUFS1):c.758T>G (p.Val253Gly) | Likely pathogenic |
| 214775 | NM_005006.7(NDUFS1):c.1696A>T (p.Ile566Phe) | Likely pathogenic |
| 214777 | NM_005006.7(NDUFS1):c.1800G>C (p.Glu600Asp) | Likely pathogenic |
| 214779 | NM_005006.7(NDUFS1):c.589ACA[1] (p.Thr198del) | Likely pathogenic |
| 214784 | NM_005006.7(NDUFS1):c.1727G>A (p.Gly576Glu) | Likely pathogenic |
| 214785 | NM_005006.7(NDUFS1):c.2107G>A (p.Ala703Thr) | Likely pathogenic |
| 2430648 | NM_005006.7(NDUFS1):c.631_633del (p.Glu211del) | Likely pathogenic |
| 2630234 | NM_005006.7(NDUFS1):c.1773_1774dup (p.Lys592fs) | Likely pathogenic |
| 2690651 | NM_005006.7(NDUFS1):c.1119dup (p.Thr374fs) | Likely pathogenic |
| 2769975 | NM_005006.7(NDUFS1):c.61+1_61+3del | Likely pathogenic |
SpliceAI
2928 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:206124129:TGCAC:T | donor_gain | 1.0000 |
| 2:206124133:C:CT | donor_gain | 1.0000 |
| 2:206124134:T:TT | donor_gain | 1.0000 |
| 2:206124153:T:C | donor_gain | 1.0000 |
| 2:206126534:CAT:C | donor_loss | 1.0000 |
| 2:206126535:ATACC:A | donor_loss | 1.0000 |
| 2:206126608:CTAG:C | acceptor_gain | 1.0000 |
| 2:206126609:TAG:T | acceptor_gain | 1.0000 |
| 2:206126610:AG:A | acceptor_gain | 1.0000 |
| 2:206126610:AGCT:A | acceptor_loss | 1.0000 |
| 2:206126611:GCTG:G | acceptor_loss | 1.0000 |
| 2:206126612:C:CC | acceptor_gain | 1.0000 |
| 2:206126612:CTGCA:C | acceptor_loss | 1.0000 |
| 2:206126615:C:CT | acceptor_gain | 1.0000 |
| 2:206126617:C:CT | acceptor_gain | 1.0000 |
| 2:206126618:A:T | acceptor_gain | 1.0000 |
| 2:206126704:TGTTA:T | donor_loss | 1.0000 |
| 2:206126705:GTTAC:G | donor_loss | 1.0000 |
| 2:206126706:TTA:T | donor_loss | 1.0000 |
| 2:206126707:TA:T | donor_loss | 1.0000 |
| 2:206126708:A:G | donor_loss | 1.0000 |
| 2:206126709:C:G | donor_loss | 1.0000 |
| 2:206126843:ATCTA:A | acceptor_loss | 1.0000 |
| 2:206126845:C:CC | acceptor_gain | 1.0000 |
| 2:206126851:CA:C | acceptor_gain | 1.0000 |
| 2:206126852:A:C | acceptor_gain | 1.0000 |
| 2:206126856:C:CT | acceptor_gain | 1.0000 |
| 2:206126857:A:T | acceptor_gain | 1.0000 |
| 2:206126864:C:CT | acceptor_gain | 1.0000 |
| 2:206126864:C:T | acceptor_gain | 1.0000 |
AlphaMissense
4773 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:206144911:A:G | W285R | 1.000 |
| 2:206144911:A:T | W285R | 1.000 |
| 2:206146911:C:A | W243C | 1.000 |
| 2:206146911:C:G | W243C | 1.000 |
| 2:206146913:A:G | W243R | 1.000 |
| 2:206146913:A:T | W243R | 1.000 |
| 2:206146954:C:T | G229D | 1.000 |
| 2:206146955:C:G | G229R | 1.000 |
| 2:206146962:G:C | C226W | 1.000 |
| 2:206146963:C:T | C226Y | 1.000 |
| 2:206146964:A:G | C226R | 1.000 |
| 2:206146977:A:C | N221K | 1.000 |
| 2:206146977:A:T | N221K | 1.000 |
| 2:206147531:C:A | R184M | 1.000 |
| 2:206147536:G:C | C182W | 1.000 |
| 2:206147537:C:T | C182Y | 1.000 |
| 2:206147538:A:G | C182R | 1.000 |
| 2:206147545:A:C | C179W | 1.000 |
| 2:206147546:C:A | C179F | 1.000 |
| 2:206147546:C:G | C179S | 1.000 |
| 2:206147546:C:T | C179Y | 1.000 |
| 2:206147547:A:G | C179R | 1.000 |
| 2:206147547:A:T | C179S | 1.000 |
| 2:206147552:A:T | I177K | 1.000 |
| 2:206147554:A:C | C176W | 1.000 |
| 2:206147555:C:T | C176Y | 1.000 |
| 2:206147556:A:G | C176R | 1.000 |
| 2:206147558:C:A | R175I | 1.000 |
| 2:206147558:C:G | R175T | 1.000 |
| 2:206147753:C:A | Q140H | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000083891 (2:206147370 C>A,G), RS1000160517 (2:206119430 GAC>G), RS1000178025 (2:206132469 C>G,T), RS1000178857 (2:206159395 C>A,G,T), RS1000240465 (2:206153020 A>C), RS1000284923 (2:206128481 G>C,T), RS1000350980 (2:206121805 G>A), RS1000401060 (2:206119037 G>C), RS1000507583 (2:206130995 A>G,T), RS1000507712 (2:206129334 C>T), RS1000572614 (2:206135825 T>C), RS1000613734 (2:206124822 G>A,C), RS1000765969 (2:206130637 G>C), RS1000797106 (2:206125092 C>CA,CT), RS1000820671 (2:206117243 A>G)
Disease associations
OMIM: gene MIM:157655 | disease phenotypes: MIM:618226, MIM:252010, MIM:256000, MIM:540000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Leigh syndrome | Definitive | Autosomal recessive |
| mitochondrial complex I deficiency, nuclear type 5 | Definitive | Autosomal recessive |
| Leigh syndrome with leukodystrophy | Supportive | Autosomal recessive |
| mitochondrial complex I deficiency | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial disease | Definitive | AR |
| Leigh syndrome | Definitive | AR |
Mondo (7): mitochondrial complex I deficiency, nuclear type 5 (MONDO:0032610), mitochondrial complex I deficiency, nuclear type 1 (MONDO:0100224), Leigh syndrome (MONDO:0009723), mitochondrial complex I deficiency (MONDO:0100133), MELAS syndrome (MONDO:0010789), mitochondrial disease (MONDO:0044970), (MONDO:0016815)
Orphanet (4): Leigh syndrome (Orphanet:506), Isolated complex I deficiency (Orphanet:2609), MELAS (Orphanet:550), Mitochondrial disease (Orphanet:68380)
HPO phenotypes
62 total (30 of 62 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000114 | Proximal tubulopathy |
| HP:0000252 | Microcephaly |
| HP:0000253 | Progressive microcephaly |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000543 | Optic disc pallor |
| HP:0000602 | Ophthalmoplegia |
| HP:0000618 | Blindness |
| HP:0000639 | Nystagmus |
| HP:0000648 | Optic atrophy |
| HP:0000737 | Irritability |
| HP:0000817 | Reduced eye contact |
| HP:0000819 | Diabetes mellitus |
| HP:0001138 | Optic neuropathy |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001254 | Lethargy |
| HP:0001263 | Global developmental delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001290 | Generalized hypotonia |
| HP:0001298 | Encephalopathy |
| HP:0001324 | Muscle weakness |
| HP:0001332 | Dystonia |
| HP:0001347 | Hyperreflexia |
| HP:0001508 | Failure to thrive |
| HP:0001510 | Growth delay |
| HP:0001511 | Intrauterine growth retardation |
GWAS associations
5 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST005951_45 | Body mass index | 1.000000e-09 |
| GCST006148_3 | Frontotemporal dementia with GRN mutation | 1.000000e-06 |
| GCST007565_91 | Morning person | 1.000000e-13 |
| GCST007576_291 | Chronotype | 1.000000e-13 |
| GCST011494_17 | Daytime nap | 4.000000e-12 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004340 | body mass index |
| EFO:0008328 | chronotype measurement |
| EFO:0007828 | daytime rest measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D007888 | Leigh Disease | C10.228.140.163.100.412; C16.320.565.189.412; C16.320.565.202.810.444; C18.452.132.100.412; C18.452.648.189.412; C18.452.648.202.810.444; C18.452.660.520 |
| D017241 | MELAS Syndrome | C05.651.460.620.520; C10.228.140.163.100.535; C10.228.140.300.275.500; C10.668.491.500.500.500; C14.907.253.329.500; C16.320.565.189.535; C18.452.132.100.535; C18.452.648.189.535; C18.452.660.560.620.520 |
| C537475 | Mitochondrial complex I deficiency (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2363065 (PROTEIN COMPLEX), CHEMBL6066925 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
12 potent at pChembl≥5 of 22 total, top 12 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.12 | Kd | 764.8 | nM | CHEMBL3752910 |
| 6.12 | ED50 | 764.8 | nM | CHEMBL3752910 |
| 6.06 | IC50 | 870 | nM | R-(+)-MARMIN-6’-UNDECANOATE |
| 6.04 | IC50 | 920 | nM | R-(+)-MARMIN-6’-LINOLEATE |
| 6.02 | Kd | 959.1 | nM | CHEMBL5653589 |
| 6.02 | ED50 | 959.1 | nM | CHEMBL5653589 |
| 5.63 | IC50 | 2350 | nM | R-(+)-MARMIN-6’-LINOLEATE |
| 5.51 | IC50 | 3080 | nM | R-(+)-MARMIN-6’-OCTANOATE |
| 5.43 | IC50 | 3670 | nM | R-(+)-MARMIN-6’-UNDECANOATE |
| 5.43 | IC50 | 3710 | nM | R-(+)-MARMIN-6’-OCTANOATE |
| 5.31 | IC50 | 4900 | nM | (+)-9’-ISOVALEROXYLARICIRESINOL |
| 5.04 | IC50 | 9100 | nM | (+)-9’-ISOVALEROXYLARICIRESINOL |
PubChem BioAssay actives
10 with measured affinity, of 32 total; 6 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148852: Binding affinity to human NDUFS1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.7648 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] undecanoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 0.8700 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] (9Z,12Z)-octadeca-9,12-dienoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 0.9200 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148852: Binding affinity to human NDUFS1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.9591 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] octanoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 3.0800 | uM |
| [(2S,3R,4R)-2-(4-hydroxy-3-methoxyphenyl)-4-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-3-yl]methyl 3-methylbutanoate | 739269: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1,10-phenanthroline-induced HIF1 activation incubated for 30 mins prior to 1,10-phenanthroline-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 4.9000 | uM |
CTD chemical–gene interactions
60 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, decreases methylation, increases expression | 4 |
| Acetaminophen | affects cotreatment, decreases expression | 3 |
| bisphenol A | increases expression, decreases expression | 2 |
| bisphenol S | affects cotreatment, decreases expression, increases expression | 2 |
| Resveratrol | affects cotreatment, increases expression | 2 |
| Air Pollutants | affects cotreatment, increases abundance, increases expression, increases oxidation, affects expression | 2 |
| Hydrogen Peroxide | affects cotreatment, affects reaction, decreases expression, decreases reaction | 2 |
| Ozone | affects cotreatment, increases expression, increases oxidation, increases abundance, affects expression | 2 |
| Rotenone | decreases reaction, decreases expression | 2 |
| Cadmium Chloride | increases expression, decreases expression, increases abundance | 2 |
| PQQ Cofactor | decreases expression, decreases reaction, increases response to substance | 2 |
| bisphenol F | increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | increases expression, increases oxidation, increases abundance, affects cotreatment | 1 |
| nobiletin | decreases expression, decreases reaction | 1 |
| sodium arsenate | decreases expression, decreases reaction | 1 |
| alpha-naphthoflavone | decreases expression, decreases reaction | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| ochratoxin A | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases expression, increases oxidation, increases abundance | 1 |
| epigallocatechin gallate | affects reaction, decreases expression, decreases reaction, affects cotreatment | 1 |
| gallocatechol | affects cotreatment, affects reaction, decreases expression, decreases reaction | 1 |
| epicatechin gallate | affects cotreatment, affects reaction, decreases expression, decreases reaction | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | increases ADP-ribosylation | 1 |
| 2-(2-amino-3-methoxyphenyl)-4H-1-benzopyran-4-one | decreases expression, decreases reaction | 1 |
| bisphenol B | increases expression | 1 |
| abrine | increases expression | 1 |
ChEMBL screening assays
5 unique, capped per target: 5 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2353025 | Binding | Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation at 30 uM incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | Semisynthetic studies identify mitochondria poisons from botanical dietary supplements–geranyloxycoumarins from Aegle marmelos. — Bioorg Med Chem |
Cellosaurus cell lines
5 cell lines: 3 cancer cell line, 1 induced pluripotent stem cell, 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C6Q5 | IUFi002-A | Induced pluripotent stem cell | Female |
| CVCL_D1P4 | Abcam K-562 NDUFS1 KO | Cancer cell line | Female |
| CVCL_D2KP | Abcam Raji NDUFS1 KO | Cancer cell line | Male |
| CVCL_EQ47 | 8328 | Finite cell line | Male |
| CVCL_WQ06 | Abcam Jurkat NDUFS1 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
128 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT01831934 | PHASE4 | COMPLETED | Responses to Influenza Vaccine in Patients With Mitochondrial Disorders (MELAS) |
| NCT03351998 | PHASE4 | COMPLETED | Impact of Statin Therapy on Muscle Mitochondrial Function and Aerobic Capacity |
| NCT05162768 | PHASE3 | COMPLETED | Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD) |
| NCT06451757 | PHASE3 | RECRUITING | KHENERFIN Study: A Trial to Evaluate the Efficacy and Safety of Sonlicromanol in Primary Mitochondrial Diseases |
| NCT00432744 | PHASE3 | COMPLETED | Phase III Trial of Coenzyme Q10 in Mitochondrial Disease |
| NCT01721733 | PHASE2 | COMPLETED | Safety and Efficacy Study of EPI-743 in Children With Leigh Syndrome |
| NCT02352896 | PHASE2 | COMPLETED | Long-Term Safety and Efficacy Evaluation of EPI-743 in Children With Leigh Syndrome |
| NCT03747328 | PHASE2 | WITHDRAWN | ABI-009 (Nab-sirolimus) in Patients With Genetically-confirmed Leigh or Leigh-like Syndrome |
| NCT06843811 | PHASE2 | ENROLLING_BY_INVITATION | Sirolimus for Leigh Syndrome |
| NCT06990984 | PHASE2 | NOT_YET_RECRUITING | A Dose-ranging Study of TTI-0102 in Adults and Children With Leigh Syndrome Spectrum (LSS) |
| NCT00068913 | PHASE2 | UNKNOWN | Evaluating the Effectiveness of a Dichloroacetate in MELAS Syndrome |
| NCT00887562 | PHASE2 | COMPLETED | Study of Idebenone in the Treatment of Mitochondrial Encephalopathy Lactic Acidosis & Stroke-like Episodes |
| NCT01603446 | PHASE2 | COMPLETED | L-arginine Therapy on Endothelium-dependent Vasodilation & Mitochondrial Metabolism in MELAS Syndrome |
| NCT02909400 | PHASE2 | COMPLETED | The KHENERGY Study |
| NCT04165239 | PHASE2 | COMPLETED | The KHENERGYZE Study |
| NCT04475549 | PHASE2 | TERMINATED | Phase 2a Study of IW-6463 in Adults Diagnosed With Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episodes (MELAS) |
| NCT04604548 | PHASE2 | COMPLETED | The KHENEREXT Study |
| NCT04846036 | PHASE2 | SUSPENDED | The KHENERGYC Study |
| NCT06644534 | PHASE2 | RECRUITING | A Study to Assess TTI-0102 vs Placebo in MELAS Patients |
| NCT02398201 | PHASE2 | COMPLETED | A Study of Bezafibrate in Mitochondrial Myopathy |
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| NCT02976038 | PHASE2 | TERMINATED | Open-Label Extension Trial to Characterize the Long-term Safety and Tolerability of Elamipretide in Subjects With Genetically Confirmed Primary Mitochondrial Myopathy (PMM) |
| NCT03177798 | PHASE2 | COMPLETED | Mitochondria and Chronic Kidney Disease |
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| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT03056209 | PHASE1 | COMPLETED | Safety, Tolerability and Pharmacokinetic Study of KL1333 in Healthy Male Volunteers |
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Related Atlas pages
- Associated diseases: Leigh syndrome, mitochondrial complex I deficiency, nuclear type 5, mitochondrial complex I deficiency, nuclear type 1, mitochondrial disease
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): frontotemporal dementia, Leigh syndrome, MELAS syndrome, mitochondrial complex I deficiency, mitochondrial complex I deficiency, nuclear type 1, mitochondrial complex I deficiency, nuclear type 5