NDUFS2
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Also known as CI-49
Summary
NDUFS2 (NADH:ubiquinone oxidoreductase core subunit S2, HGNC:7708) is a protein-coding gene on chromosome 1q23.3, encoding NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (O75306). Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor. It is a selective cancer dependency (DepMap: 40.6% of cell lines).
The protein encoded by this gene is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (complex I). Mammalian mitochondrial complex I is composed of at least 43 different subunits, 7 of which are encoded by the mitochondrial genome, and the rest are the products of nuclear genes. The iron-sulfur protein fraction of complex I is made up of 7 subunits, including this gene product. Complex I catalyzes the NADH oxidation with concomitant ubiquinone reduction and proton ejection out of the mitochondria. Mutations in this gene are associated with mitochondrial complex I deficiency. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 4720 — RefSeq curated summary.
At a glance
- Gene–disease (curated): mitochondrial disease (Definitive, ClinGen) — +6 more curated relationships
- GWAS associations: 8
- Clinical variants (ClinVar): 254 total — 6 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 78
- Druggable target: yes
- Cancer dependency (DepMap): dependent in 40.6% of screened cell lines
- MANE Select transcript:
NM_001377299
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7708 |
| Approved symbol | NDUFS2 |
| Name | NADH:ubiquinone oxidoreductase core subunit S2 |
| Location | 1q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CI-49 |
| Ensembl gene | ENSG00000158864 |
| Ensembl biotype | protein_coding |
| OMIM | 602985 |
| Entrez | 4720 |
Gene structure
Transcript identifiers
Ensembl transcripts: 93 — 40 retained_intron, 23 nonsense_mediated_decay, 18 protein_coding, 12 protein_coding_CDS_not_defined
ENST00000367993, ENST00000392179, ENST00000465923, ENST00000467295, ENST00000468828, ENST00000473321, ENST00000475570, ENST00000478866, ENST00000479948, ENST00000480762, ENST00000483804, ENST00000492153, ENST00000493849, ENST00000496133, ENST00000496553, ENST00000676535, ENST00000676583, ENST00000676600, ENST00000676653, ENST00000676726, ENST00000676770, ENST00000676795, ENST00000676871, ENST00000676972, ENST00000676991, ENST00000677033, ENST00000677045, ENST00000677050, ENST00000677063, ENST00000677081, ENST00000677089, ENST00000677103, ENST00000677138, ENST00000677178, ENST00000677231, ENST00000677336, ENST00000677350, ENST00000677358, ENST00000677383, ENST00000677453, ENST00000677457, ENST00000677471, ENST00000677495, ENST00000677547, ENST00000677550, ENST00000677577, ENST00000677579, ENST00000677613, ENST00000677643, ENST00000677653, ENST00000677657, ENST00000677736, ENST00000677745, ENST00000677807, ENST00000677809, ENST00000677837, ENST00000677846, ENST00000677916, ENST00000677925, ENST00000677948, ENST00000678052, ENST00000678068, ENST00000678130, ENST00000678328, ENST00000678356, ENST00000678484, ENST00000678492, ENST00000678507, ENST00000678511, ENST00000678532, ENST00000678559, ENST00000678605, ENST00000678613, ENST00000678648, ENST00000678783, ENST00000678793, ENST00000678850, ENST00000678880, ENST00000678911, ENST00000678966, ENST00000678982, ENST00000679064, ENST00000679071, ENST00000679142, ENST00000679169, ENST00000679176, ENST00000679215, ENST00000679218, ENST00000679239, ENST00000679282, ENST00000873085, ENST00000960014, ENST00000960015
RefSeq mRNA: 8 — MANE Select: NM_001377299
NM_001166159, NM_001377298, NM_001377299, NM_001377300, NM_001377301, NM_001377302, NM_001410889, NM_004550
CCDS: CCDS1224, CCDS53404, CCDS91086
Canonical transcript exons
ENST00000676972 — 14 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001884216 | 161214156 | 161214395 |
| ENSE00003464463 | 161203437 | 161203543 |
| ENSE00003465746 | 161213649 | 161213732 |
| ENSE00003466143 | 161210111 | 161210188 |
| ENSE00003471424 | 161213864 | 161213921 |
| ENSE00003489152 | 161206407 | 161206597 |
| ENSE00003495523 | 161209857 | 161209931 |
| ENSE00003541082 | 161213380 | 161213475 |
| ENSE00003550227 | 161209193 | 161209313 |
| ENSE00003567087 | 161212351 | 161212480 |
| ENSE00003587080 | 161210591 | 161210710 |
| ENSE00003634980 | 161210304 | 161210389 |
| ENSE00003672735 | 161209483 | 161209595 |
| ENSE00003906071 | 161202367 | 161202480 |
Expression profiles
Bgee: expression breadth ubiquitous, 292 present calls, max score 99.19.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 75.9535 / max 561.1559, expressed in 1824 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 6217 | 75.4756 | 1824 |
| 6216 | 0.4779 | 298 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| apex of heart | UBERON:0002098 | 99.19 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.01 | gold quality |
| heart left ventricle | UBERON:0002084 | 98.98 | gold quality |
| cardiac ventricle | UBERON:0002082 | 98.96 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 98.84 | gold quality |
| muscle of leg | UBERON:0001383 | 98.81 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.75 | gold quality |
| heart right ventricle | UBERON:0002080 | 98.70 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.70 | gold quality |
| right atrium auricular region | UBERON:0006631 | 98.69 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 98.66 | gold quality |
| muscle organ | UBERON:0001630 | 98.62 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 98.60 | gold quality |
| cardiac atrium | UBERON:0002081 | 98.59 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.51 | gold quality |
| heart | UBERON:0000948 | 98.47 | gold quality |
| body of tongue | UBERON:0011876 | 98.37 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.36 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.30 | gold quality |
| diaphragm | UBERON:0001103 | 98.24 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.21 | gold quality |
| adrenal cortex | UBERON:0001235 | 98.20 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.20 | gold quality |
| deltoid | UBERON:0001476 | 98.17 | gold quality |
| left ovary | UBERON:0002119 | 98.15 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.15 | gold quality |
| transverse colon | UBERON:0001157 | 98.14 | gold quality |
| quadriceps femoris | UBERON:0001377 | 98.12 | gold quality |
| adrenal gland | UBERON:0002369 | 98.10 | gold quality |
| right ovary | UBERON:0002118 | 98.09 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6379 | no | 808.30 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
7 targeting NDUFS2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-4735-5P | 99.43 | 68.49 | 1780 |
| HSA-MIR-940 | 99.37 | 66.14 | 2064 |
| HSA-MIR-6808-5P | 99.31 | 66.23 | 2150 |
| HSA-MIR-6893-5P | 99.31 | 66.25 | 2119 |
| HSA-MIR-4279 | 99.19 | 66.70 | 2437 |
| HSA-MIR-2277-3P | 91.94 | 62.27 | 299 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 40.6% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- Trx, dCBP, and Sbf1 are closely linked, physically and functionally, in the maintenance of Hox gene expression. (PMID:11701926)
- The Drosophila trithorax protein is a coactivator required to prevent re-establishment of polycomb silencing. (PMID:11973279)
- Genomic imprinting in Drosophila is maintained by the products of Suppressor of variegation and trithorax group, but not Polycomb group, genes. (PMID:12242505)
- Trithorax interacts with type 1 serine/threonine protein phosphatase. (PMID:12524522)
- This suggests that TRITHORAX bound to certain regulatory chromosome regions interacts with the adjacent elements of the nuclear scaffold, i.e., links the regions of actively transcribed genes with the nuclear matrix. (PMID:12669422)
- identified several members of the Polycomb and trithorax classes of genes required for the normal pattern of photoreceptor differentiation (PMID:15020417)
- Results suggest that protein phosphatase 1beta9C and Trithorax cooperate in Drosophila wing development. (PMID:15366010)
- Deletion analysis showed that the C-terminus of dDYRK2 modulated the interaction with SNR1 and TRX. (PMID:16671894)
- it is proposed that that the Trithorax complex, TAC1, promotes the mosaic pattern of Ubx expression by facilitating transcriptional elongation of bxd noncoding RNAs, which represses Ubx transcription (PMID:17174895)
- Data demonstrate that the Drosophila homologs of mixed-lineage leukemia protein and host cell factor 1, called Trithorax and dHCF, are both cleaved by Drosophila taspase 1. (PMID:17698583)
- Computational analysis ofmicroarray data, identified 25 clusters of genes potentially regulated by TRX; most of these clusters consist of genes that encode structural proteins involved in cuticle formation. (PMID:18783608)
- results indicate that DNA binding proteins serve as platforms to assist PcG and trxG binding. Furthermore, several DNA sequence features discriminate between PcG- and TRX-N-bound regions (PMID:19143474)
- Hsp90 cooperates with Trx at chromatin for maintaining the active expression state of targets like the Hox genes. (PMID:19144915)
- These findings establish a role for PRC2 and TRX in the modulation of organismal longevity and stress resistance and indicate that moderate perturbation of Polycomb silencing can increase longevity. (PMID:20018689)
- Polycomb and trithorax control genome expression by determining the alternative epigenetic states of chromatin for key developmental regulators (PMID:21254568)
- dHCF possesses Enhancer of TrxG and PcG (ETP) properties. (PMID:22174740)
- Data imply that Trx, Pc, and E(z) remain bound or rapidly rebind to nascent DNA in the absence of trimethylated histones during DNA replication in Drosophila embryos. (PMID:22921915)
- mutations in PcG components and in TrxG members found in chromatin remodeling complexes enhance the gcm dominant phenotype, suggesting a balanced action of these chromatin modifiers regulate Gcm function (PMID:23300465)
- CpG island encompassing the promoter and first exon of human DNMT3L gene is a PcG/TrX response element (PMID:24743422)
- From the Drosophila melanogaster vestigial (vg) Polycomb response element/Trithorax response element switches the status of the element. (PMID:25108384)
- Trithorax maintains the functional heterogeneity of neural stem cells through the transcription factor buttonhead. (PMID:25285447)
- Trithorax has a role in regulating systemic signaling during Drosophila imaginal disc regeneration (PMID:26487779)
- If ASH1 or TRX function is lost or reduced, heterochromatin can spread into these domains creating a sink that diverts heterochromatic proteins from other variegating locations, which then may express a suppressed phenotype. (PMID:27373142)
- Trithorax positively regulates gene expression in Drosophila and co-occupies PREs to antagonize Polycomb-dependent silencing. Trx-dependent H3K4 dimethylation (H3K4me2) marks Drosophila PREs and maintains the developmental expression pattern of nearby genes. (PMID:27447986)
- Taken together, these data indicate that Atrophin is a major Trithorax-like cofactor that functions to moderate developmental gene transcription. (PMID:28327288)
- Mrg15 is a subunit of the Ash1 complex, a stimulator of Ash1 enzymatic activity and a critical regulator of the TrxG protein function of Ash1 in Drosophila. (PMID:29158494)
- Control of the gene activity by polycomb and trithorax group proteins in Drosophila (PMID:29372960)
- we demonstrate that the evolutionary conserved Lim3 core promoter provides basic Lim3 expression, whereas structural changes in the Lim3 PRE of distal promoter provide stage-, and tissue-specific Lim3 expression. Therefore, we hypothesize that PcG/TrxG proteins, which are directly involved in Lim3 transcription regulation, participate in lifespan control. (PMID:29555581)
- Trx and Grx have both, common and specific protein Cys redox targets and that down regulation of either redoxin has markedly different metabolic outcomes. They reflect the delicate sensitivity of redox equilibrium to changes in any of the elements involved and the difficulty of forecasting metabolic responses to redox environmental changes. (PMID:30639960)
- Trx, Ash1, and CBP proteins are required for the correct chromosome segregation and that Ash1 and CBP mediate for Cid/CENP-A recruitment at centromeres through post-translational histone modifications. (PMID:31203392)
- Dynamic Competition of Polycomb and Trithorax in Transcriptional Programming. (PMID:31928411)
- Distinct Roles for COMPASS Core Subunits Set1, Trx, and Trr in the Epigenetic Regulation of Drosophila Heart Development. (PMID:38139143)
- Our results confirm that NDUFS2 is a mutational hotspot in Caucasian children with isolated complex I deficiency and recommend the routine diagnostic investigation of this gene in patients with Leigh or Leigh-like phenotypes. (PMID:20819849)
- The NDUFS2 mutation affects complex I enzymatic function. (PMID:22036843)
- study describes clinical, radiological, biochemical and molecular data of 6 patients with Leigh syndrome with novel mutations in NDUFV1 and NDUFS2; 2 siblings were compound heterozygotes for an undescribed E104A mutation in NDUFS2 (PMID:23266820)
- NDUFAF7 methylates arginine 85 in the NDUFS2 subunit of human complex I. (PMID:24089531)
- Results found nominal significant associations of 2 SNPs in the NDUFS1 gene and 4 SNPs in the NDUFS2 gene with early onset schizophrenia (EOS), but none of these associations survived the Bonferroni correction. (PMID:26053550)
- compound heterozygosity for severe and hypomorphic NDUFS2 mutations can cause non-syndromic hereditary optic neuropathy. (PMID:28031252)
- findings uncover a novel S100A4 function and highlight its importance in controlling NDUFS2 expression to regulate the plasticity of mitochondrial metabolism and thereby promote the invasive and metastatic capacity in lung cancer (PMID:30885944)
- Complex I protein NDUFS2 is vital for growth, ROS generation, membrane integrity, apoptosis, and mitochondrial energetics. (PMID:33744462)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ndufs2 | ENSDARG00000007526 |
| mus_musculus | Ndufs2 | ENSMUSG00000013593 |
| rattus_norvegicus | Ndufs2 | ENSRNOG00000038372 |
| drosophila_melanogaster | ND-49L | FBGN0039331 |
| drosophila_melanogaster | ND-49 | FBGN0039909 |
| caenorhabditis_elegans | WBGENE00001520 | |
| caenorhabditis_elegans | WBGENE00006463 |
Protein
Protein identifiers
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial — O75306 (reviewed: O75306)
Alternative names: Complex I-49kD, NADH-ubiquinone oxidoreductase 49 kDa subunit
All UniProt accessions (18): O75306, A0A7I2V2B9, A0A7I2V2P1, A0A7I2V3J6, A0A7I2V410, A0A7I2V4G5, A0A7I2V4W5, A0A7I2V4X8, A0A7I2V517, A0A7I2V596, A0A7I2V5D5, A0A7I2V5E2, A0A7I2V5G4, A0A7I2V5X7, A0A7I2V630, A0A7I2YQD8, A0A7I2YQG7, A0A7I2YQX7
UniProt curated annotations — full annotation on UniProt →
Function. Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor. Essential for the catalytic activity of complex I. Essential for the assembly of complex I. Redox-sensitive, critical component of the oxygen-sensing pathway in the pulmonary vasculature which plays a key role in acute pulmonary oxygen-sensing and hypoxic pulmonary vasoconstriction. Plays an important role in carotid body sensing of hypoxia. Essential for glia-like neural stem and progenitor cell proliferation, differentiation and subsequent oligodendrocyte or neuronal maturation.
Subunit / interactions. Core subunit of respiratory chain NADH dehydrogenase (Complex I) which is composed of 45 different subunits. Component of the iron-sulfur (IP) fragment of the enzyme. Interacts with NDUFAF3. Interacts with NDUFAF7. Interacts with CERS2.
Subcellular location. Mitochondrion inner membrane.
Post-translational modifications. Dimethylation at Arg-118 by NDUFAF7 takes place after NDUFS2 assembles into the complex I, leading to stabilize the early intermediate complex.
Disease relevance. Mitochondrial complex I deficiency, nuclear type 6 (MC1DN6) [MIM:618228] A form of mitochondrial complex I deficiency, the most common biochemical signature of mitochondrial disorders, a group of highly heterogeneous conditions characterized by defective oxidative phosphorylation, which collectively affects 1 in 5-10000 live births. Clinical disorders have variable severity, ranging from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease. MC1DN6 transmission pattern is consistent with autosomal recessive inheritance. The disease is caused by variants affecting the gene represented in this entry. Leber-like hereditary optic neuropathy, autosomal recessive 2 (LHONAR2) [MIM:620569] An autosomal recessive form of Leber hereditary optic neuropathy, a mitochondrial disease resulting in bilateral painless loss of central vision due to selective degeneration of the retinal ganglion cells and their axons. LHONAR2 is characterized by subacute bilateral or asymmetrical visual loss, optic nerve pseudoedema and peripapillary telangiectasia in the early phase of the disease, and eventual partial recovery in some patients. The disease is caused by variants affecting the gene represented in this entry.
Cofactor. Binds 1 [4Fe-4S] cluster.
Similarity. Belongs to the complex I 49 kDa subunit family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O75306-1 | 1 | yes |
| O75306-2 | 2 |
RefSeq proteins (8): NP_001159631, NP_001364227, NP_001364228, NP_001364229, NP_001364230, NP_001364231, NP_001397818, NP_004541 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001135 | NADH_Q_OxRdtase_suD | Domain |
| IPR014029 | NADH_UbQ_OxRdtase_49kDa_CS | Conserved_site |
| IPR022885 | NDH1_su_D/H | Family |
| IPR029014 | NiFe-Hase_large | Homologous_superfamily |
Pfam: PF00346
Catalyzed reactions (Rhea), 1 shown:
- a ubiquinone + NADH + 5 H(+)(in) = a ubiquinol + NAD(+) + 4 H(+)(out) (RHEA:29091)
UniProt features (53 total): helix 18, strand 11, sequence variant 10, turn 5, binding site 3, modified residue 2, transit peptide 1, chain 1, sequence conflict 1, splice variant 1
Structure
Experimental structures (PDB)
8 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 9I4I | ELECTRON MICROSCOPY | 2.63 |
| 9TI4 | ELECTRON MICROSCOPY | 2.66 |
| 5XTB | ELECTRON MICROSCOPY | 3.4 |
| 9CWT | ELECTRON MICROSCOPY | 3.44 |
| 5XTC | ELECTRON MICROSCOPY | 3.7 |
| 5XTD | ELECTRON MICROSCOPY | 3.7 |
| 5XTH | ELECTRON MICROSCOPY | 3.9 |
| 5XTI | ELECTRON MICROSCOPY | 17.4 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O75306-F1 | 89.62 | 0.81 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (3): 326; 332; 347
Post-translational modifications (2): 62, 118
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-611105 | Respiratory electron transport |
| R-HSA-6799198 | Complex I biogenesis |
| R-HSA-1428517 | Aerobic respiration and respiratory electron transport |
| R-HSA-1430728 | Metabolism |
MSigDB gene sets: 431 (showing top):
MODULE_93, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, MODY_HIPPOCAMPUS_POSTNATAL, MODULE_77, LFA1_Q6, MORF_HDAC1, GOBP_MITOCHONDRIAL_RESPIRATORY_CHAIN_COMPLEX_ASSEMBLY, GOBP_NEUROGENESIS, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_NUCLEOSIDE_PHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_ORGANOPHOSPHATE_BIOSYNTHETIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_MONOATOMIC_CATION_TRANSPORT, GOBP_NUCLEOBASE_CONTAINING_SMALL_MOLECULE_METABOLIC_PROCESS, GOBP_NEURAL_PRECURSOR_CELL_PROLIFERATION
GO Biological Process (10): mitochondrial electron transport, NADH to ubiquinone (GO:0006120), aerobic respiration (GO:0009060), neurogenesis (GO:0022008), mitochondrial respiratory chain complex I assembly (GO:0032981), gliogenesis (GO:0042063), mitochondrial ATP synthesis coupled electron transport (GO:0042775), proton motive force-driven mitochondrial ATP synthesis (GO:0042776), neural precursor cell proliferation (GO:0061351), cellular response to oxygen levels (GO:0071453), proton transmembrane transport (GO:1902600)
GO Molecular Function (13): NADH dehydrogenase (ubiquinone) activity (GO:0008137), electron transfer activity (GO:0009055), oxidoreductase activity, acting on NAD(P)H (GO:0016651), oxygen sensor activity (GO:0019826), ubiquitin protein ligase binding (GO:0031625), metal ion binding (GO:0046872), quinone binding (GO:0048038), NAD binding (GO:0051287), 4 iron, 4 sulfur cluster binding (GO:0051539), NADH dehydrogenase activity (GO:0003954), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), iron-sulfur cluster binding (GO:0051536)
GO Cellular Component (5): mitochondrion (GO:0005739), mitochondrial inner membrane (GO:0005743), mitochondrial matrix (GO:0005759), respiratory chain complex I (GO:0045271), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Aerobic respiration and respiratory electron transport | 1 |
| Respiratory electron transport | 1 |
| Metabolism | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| mitochondrion | 3 |
| aerobic electron transport chain | 1 |
| mitochondrial ATP synthesis coupled electron transport | 1 |
| cellular respiration | 1 |
| nervous system development | 1 |
| cell differentiation | 1 |
| NADH dehydrogenase complex assembly | 1 |
| mitochondrial respiratory chain complex assembly | 1 |
| neurogenesis | 1 |
| ATP synthesis coupled electron transport | 1 |
| oxidative phosphorylation | 1 |
| proton motive force-driven ATP synthesis | 1 |
| cell population proliferation | 1 |
| response to oxygen levels | 1 |
| cellular response to chemical stimulus | 1 |
| monoatomic cation transmembrane transport | 1 |
| NADH dehydrogenase activity | 1 |
| electron transfer activity | 1 |
| proton transmembrane transporter activity | 1 |
| oxidoreduction-driven active transmembrane transporter activity | 1 |
| oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1 |
| active monoatomic ion transmembrane transporter activity | 1 |
| molecular_function | 1 |
| oxidoreductase activity | 1 |
| oxygen binding | 1 |
| molecular sensor activity | 1 |
| ubiquitin-like protein ligase binding | 1 |
| cation binding | 1 |
| small molecule binding | 1 |
| adenyl nucleotide binding | 1 |
| iron-sulfur cluster binding | 1 |
| oxidoreductase activity, acting on NAD(P)H | 1 |
| binding | 1 |
| catalytic activity | 1 |
| metal cluster binding | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
| organelle inner membrane | 1 |
| mitochondrial membrane | 1 |
| intracellular organelle lumen | 1 |
Protein interactions and networks
STRING
3815 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NDUFS2 | NDUFS3 | O75489 | 999 |
| NDUFS2 | NDUFS7 | O75251 | 998 |
| NDUFS2 | NDUFS8 | O00217 | 998 |
| NDUFS2 | NDUFS1 | P28331 | 998 |
| NDUFS2 | NDUFV1 | P49821 | 996 |
| NDUFS2 | NDUFV2 | P19404 | 993 |
| NDUFS2 | NDUFA5 | Q16718 | 971 |
| NDUFS2 | NDUFS6 | O75380 | 964 |
| NDUFS2 | NDUFS4 | O43181 | 956 |
| NDUFS2 | NDUFA9 | Q16795 | 914 |
| NDUFS2 | NDUFA10 | O95299 | 905 |
| NDUFS2 | NDUFAF4 | Q9P032 | 879 |
| NDUFS2 | MT-ND1 | P03886 | 870 |
| NDUFS2 | NDUFA11 | Q86Y39 | 869 |
| NDUFS2 | NDUFS5 | O43920 | 858 |
IntAct
185 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NDUFS3 | NDUFS2 | psi-mi:“MI:0914”(association) | 0.850 |
| NDUFS2 | NDUFS3 | psi-mi:“MI:0914”(association) | 0.850 |
| NDUFS3 | NDUFS2 | psi-mi:“MI:0915”(physical association) | 0.850 |
| NDUFS2 | NDUFS3 | psi-mi:“MI:0915”(physical association) | 0.850 |
| NDUFA9 | NDUFS2 | psi-mi:“MI:0915”(physical association) | 0.740 |
| NDUFS3 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.730 |
| NDUFV2 | NDUFS2 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| HSPD1 | NUDT19 | psi-mi:“MI:0914”(association) | 0.710 |
| NDUFS7 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFS6 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFAF4 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFA13 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.640 |
| NDUFA9 | NDUFS4 | psi-mi:“MI:0914”(association) | 0.640 |
BioGRID (412): NDUFS2 (Affinity Capture-RNA), NDUFS2 (Affinity Capture-RNA), NDUFS2 (Affinity Capture-RNA), NDUFS2 (Affinity Capture-MS), NDUFS2 (Affinity Capture-MS), NDUFS2 (Affinity Capture-MS), NDUFS2 (Affinity Capture-MS), NDUFS2 (Affinity Capture-MS), DLD (Co-fractionation), LMAN2 (Co-fractionation), NDUFS1 (Co-fractionation), NDUFS2 (Co-fractionation), NDUFS2 (Co-fractionation), NDUFS2 (Co-fractionation), NDUFS2 (Co-fractionation)
ESM2 similar proteins: A0QJV0, A0QU33, A1BF35, A2CD94, A4FPT8, A4SF45, A5FX11, A5GP75, A5GWA1, A5VAM0, A5VPY6, A6X1N0, A9B4Z7, A9MAI2, B0CLD2, B0SZ49, B1ZRT0, B2S546, B3PW00, B4RCM6, B5ZYL5, B6JGW3, O75306, P17694, P22142, Q0I6T6, Q0MQG3, Q0MQG4, Q0MQG5, Q135X7, Q1GTK0, Q1MIL2, Q28T72, Q2G5Y6, Q2K9T1, Q2NA64, Q2YNG0, Q31ME6, Q3AGW8, Q3AVZ9
Diamond homologs: A0LDS4, A0LRI4, A0PR41, A0QJV0, A0QU33, A1K5B1, A1KNE4, A1SE30, A1T6A3, A1TLL9, A1UDA1, A1W4M5, A2SFM9, A3PWR8, A4FPT8, A4TDA8, A4XC35, A5CES2, A5FX11, A5G9B6, A5U7G4, A5UZH7, A6UFK4, A7NIV9, A8EZ86, A8F1C5, A8GN50, A8GRR5, A8GX80, A8LC98, A8M619, A9B4Z7, A9BNB1, A9CJA9, A9HRT9, A9WFB4, B0BX71, B0ULK7, B1MPG7, B1W516
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NDUFS2 | “form complex” | “NADH-ubiquinone oxidoreductase-Mitochondrial respiratory chain complex I” | binding |
| CDK1 | “up-regulates activity” | NDUFS2 | phosphorylation |
| CyclinB/CDK1 | “up-regulates activity” | NDUFS2 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 144 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Complex I biogenesis | 29 | 48.0× | 2e-40 |
| Respiratory electron transport | 30 | 28.6× | 3e-34 |
| Aerobic respiration and respiratory electron transport | 30 | 26.6× | 2e-33 |
| Mitochondrial protein degradation | 10 | 11.4× | 1e-06 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| mitochondrial electron transport, NADH to ubiquinone | 21 | 61.7× | 9e-31 |
| proton motive force-driven mitochondrial ATP synthesis | 23 | 49.6× | 7e-31 |
| mitochondrial respiratory chain complex I assembly | 14 | 47.2× | 3e-18 |
| aerobic respiration | 23 | 46.7× | 1e-30 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
254 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 6 |
| Likely pathogenic | 6 |
| Uncertain significance | 109 |
| Likely benign | 72 |
| Benign | 16 |
Top pathogenic / likely-pathogenic (12)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1451468 | NM_001377299.1(NDUFS2):c.128G>A (p.Trp43Ter) | Pathogenic |
| 2627943 | NM_001377299.1(NDUFS2):c.923A>G (p.Tyr308Cys) | Pathogenic |
| 4312718 | NM_001377299.1(NDUFS2):c.1102C>T (p.Arg368Ter) | Pathogenic |
| 4714351 | NM_001377299.1(NDUFS2):c.90del (p.Ser31fs) | Pathogenic |
| 6710 | NM_001377299.1(NDUFS2):c.686C>A (p.Pro229Gln) | Pathogenic |
| 872511 | NM_001377299.1(NDUFS2):c.442G>A (p.Glu148Lys) | Pathogenic |
| 1324786 | NM_001377299.1(NDUFS2):c.646C>T (p.Arg216Ter) | Likely pathogenic |
| 1478205 | NM_001377299.1(NDUFS2):c.1212+1G>T | Likely pathogenic |
| 2010294 | NM_001377299.1(NDUFS2):c.867-1G>A | Likely pathogenic |
| 4312697 | NM_001377299.1(NDUFS2):c.805C>T (p.Arg269Ter) | Likely pathogenic |
| 522715 | NM_001377299.1(NDUFS2):c.268G>A (p.Ala90Thr) | Likely pathogenic |
| 6711 | NM_001377299.1(NDUFS2):c.1237T>C (p.Ser413Pro) | Likely pathogenic |
SpliceAI
1708 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:161206399:C:G | acceptor_gain | 1.0000 |
| 1:161206406:GAT:G | acceptor_gain | 1.0000 |
| 1:161206406:GATGT:G | acceptor_gain | 1.0000 |
| 1:161206525:G:GT | donor_gain | 1.0000 |
| 1:161206560:GCAC:G | donor_gain | 1.0000 |
| 1:161206567:G:GT | donor_gain | 1.0000 |
| 1:161209188:CCCA:C | acceptor_loss | 1.0000 |
| 1:161209189:CCA:C | acceptor_loss | 1.0000 |
| 1:161209191:A:C | acceptor_loss | 1.0000 |
| 1:161209192:G:GC | acceptor_loss | 1.0000 |
| 1:161209472:T:TA | acceptor_gain | 1.0000 |
| 1:161209479:ACAGT:A | acceptor_gain | 1.0000 |
| 1:161209480:CA:C | acceptor_loss | 1.0000 |
| 1:161209481:A:AG | acceptor_gain | 1.0000 |
| 1:161209481:AGT:A | acceptor_gain | 1.0000 |
| 1:161209482:G:A | acceptor_loss | 1.0000 |
| 1:161209482:G:GG | acceptor_gain | 1.0000 |
| 1:161209482:GT:G | acceptor_gain | 1.0000 |
| 1:161209482:GTG:G | acceptor_gain | 1.0000 |
| 1:161209482:GTGC:G | acceptor_gain | 1.0000 |
| 1:161209482:GTGCT:G | acceptor_gain | 1.0000 |
| 1:161209592:GAAG:G | donor_gain | 1.0000 |
| 1:161209594:AGGTA:A | donor_loss | 1.0000 |
| 1:161209596:GTAAG:G | donor_loss | 1.0000 |
| 1:161209597:T:G | donor_loss | 1.0000 |
| 1:161210302:A:AG | acceptor_gain | 1.0000 |
| 1:161210303:G:GG | acceptor_gain | 1.0000 |
| 1:161210383:GTTT:G | donor_gain | 1.0000 |
| 1:161210384:TTTT:T | donor_gain | 1.0000 |
| 1:161210586:CACA:C | acceptor_loss | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000215905 (1:161201143 C>T), RS1000247065 (1:161201522 A>T), RS1000550277 (1:161199368 G>A), RS1000852820 (1:161198252 T>C), RS1000861295 (1:161212740 G>T), RS1000905157 (1:161198500 G>A), RS1000920945 (1:161205384 T>G), RS1000963834 (1:161198002 C>T), RS1000987613 (1:161199714 A>G), RS1001046124 (1:161211509 G>A,C,T), RS1001182443 (1:161196947 C>T), RS1001236405 (1:161197189 C>T), RS1001246555 (1:161202840 A>G), RS1001357326 (1:161195874 A>G), RS1001373653 (1:161203271 C>G,T)
Disease associations
OMIM: gene MIM:602985 | disease phenotypes: MIM:618228, MIM:252010, MIM:620569, MIM:535000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial complex I deficiency, nuclear type 6 | Definitive | Autosomal recessive |
| Leber hereditary optic neuropathy | Supportive | Mitochondrial |
| Leigh syndrome with leukodystrophy | Supportive | Autosomal recessive |
| mitochondrial complex I deficiency | Supportive | Autosomal recessive |
| Leigh syndrome with cardiomyopathy | Supportive | Autosomal recessive |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| mitochondrial disease | Definitive | AR |
| Leigh syndrome | Definitive | AR |
Mondo (8): mitochondrial complex I deficiency, nuclear type 6 (MONDO:0032611), mitochondrial complex I deficiency, nuclear type 1 (MONDO:0100224), optic atrophy (MONDO:0003608), mitochondrial complex I deficiency (MONDO:0100133), Leber-like hereditary optic neuropathy, autosomal recessive 2 (MONDO:0958197), Leber hereditary optic neuropathy (MONDO:0010788), (MONDO:0016815), Leigh syndrome with cardiomyopathy (MONDO:0019083)
Orphanet (2): Isolated complex I deficiency (Orphanet:2609), Leber hereditary optic neuropathy (Orphanet:104)
HPO phenotypes
78 total (30 of 78 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000114 | Proximal tubulopathy |
| HP:0000252 | Microcephaly |
| HP:0000407 | Sensorineural hearing impairment |
| HP:0000486 | Strabismus |
| HP:0000508 | Ptosis |
| HP:0000512 | Abnormal electroretinogram |
| HP:0000529 | Progressive visual loss |
| HP:0000543 | Optic disc pallor |
| HP:0000551 | Color vision defect |
| HP:0000576 | Centrocecal scotoma |
| HP:0000603 | Central scotoma |
| HP:0000618 | Blindness |
| HP:0000622 | Blurred vision |
| HP:0000639 | Nystagmus |
| HP:0000642 | Red-green dyschromatopsia |
| HP:0000648 | Optic atrophy |
| HP:0000649 | Abnormality of visual evoked potentials |
| HP:0000666 | Horizontal nystagmus |
| HP:0000817 | Reduced eye contact |
| HP:0000819 | Diabetes mellitus |
| HP:0001138 | Optic neuropathy |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001254 | Lethargy |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0001290 | Generalized hypotonia |
| HP:0001298 | Encephalopathy |
| HP:0001324 | Muscle weakness |
GWAS associations
8 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004608_41 | Granulocyte percentage of myeloid white cells | 2.000000e-10 |
| GCST005038_11 | Allergic disease (asthma, hay fever or eczema) | 1.000000e-11 |
| GCST007797_50 | Asthma onset (childhood vs adult) | 1.000000e-06 |
| GCST007798_9 | Asthma | 9.000000e-12 |
| GCST007800_18 | Asthma (childhood onset) | 3.000000e-32 |
| GCST008916_64 | Asthma | 2.000000e-08 |
| GCST009719_20 | Allergic rhinitis | 4.000000e-10 |
| GCST009720_86 | Asthma | 1.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007997 | granulocyte percentage of myeloid white cells |
| EFO:0004847 | age at onset |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009896 | Optic Atrophy | C10.292.700.225; C11.640.451 |
| D029242 | Optic Atrophy, Hereditary, Leber | C10.292.700.225.500.400; C10.574.500.662.400; C11.270.564.400; C11.640.451.451.400; C16.320.290.564.400; C16.320.400.630.400; C18.452.660.670 |
| C537475 | Mitochondrial complex I deficiency (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2363065 (PROTEIN COMPLEX), CHEMBL3039 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
16 potent at pChembl≥5 of 26 total, top 14 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.48 | IC50 | 33 | nM | CHEMBL4798829 |
| 7.34 | Kd | 45.26 | nM | CHEMBL3752910 |
| 7.34 | ED50 | 45.26 | nM | CHEMBL3752910 |
| 7.10 | IC50 | 79 | nM | CHEMBL4798829 |
| 6.06 | IC50 | 870 | nM | R-(+)-MARMIN-6’-UNDECANOATE |
| 6.04 | IC50 | 920 | nM | R-(+)-MARMIN-6’-LINOLEATE |
| 5.91 | Kd | 1236 | nM | CHEMBL5653589 |
| 5.91 | ED50 | 1236 | nM | CHEMBL5653589 |
| 5.63 | IC50 | 2350 | nM | R-(+)-MARMIN-6’-LINOLEATE |
| 5.51 | IC50 | 3080 | nM | R-(+)-MARMIN-6’-OCTANOATE |
| 5.43 | IC50 | 3670 | nM | R-(+)-MARMIN-6’-UNDECANOATE |
| 5.43 | IC50 | 3710 | nM | R-(+)-MARMIN-6’-OCTANOATE |
| 5.31 | IC50 | 4900 | nM | (+)-9’-ISOVALEROXYLARICIRESINOL |
| 5.04 | IC50 | 9100 | nM | (+)-9’-ISOVALEROXYLARICIRESINOL |
PubChem BioAssay actives
10 with measured affinity, of 32 total; 6 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148853: Binding affinity to human NDUFS2 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0453 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] undecanoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 0.8700 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] (9Z,12Z)-octadeca-9,12-dienoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 0.9200 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148853: Binding affinity to human NDUFS2 incubated for 45 mins by Kinobead based pull down assay | kd | 1.2362 | uM |
| [(E,3R)-2-hydroxy-2,6-dimethyl-8-(2-oxochromen-7-yl)oxyoct-6-en-3-yl] octanoate | 739270: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 3.0800 | uM |
| [(2S,3R,4R)-2-(4-hydroxy-3-methoxyphenyl)-4-[(4-hydroxy-3-methoxyphenyl)methyl]oxolan-3-yl]methyl 3-methylbutanoate | 739269: Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1,10-phenanthroline-induced HIF1 activation incubated for 30 mins prior to 1,10-phenanthroline-challenge measured after 16 hrs by luciferase reporter assay | ic50 | 4.9000 | uM |
CTD chemical–gene interactions
46 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Acetaminophen | affects cotreatment, decreases expression | 3 |
| bisphenol A | increases expression | 2 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 2 |
| Arsenic | increases methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| Valproic Acid | increases expression, increases methylation | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| triphenyl phosphate | affects expression | 1 |
| sodium arsenate | decreases expression | 1 |
| beta-lapachone | increases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | increases ADP-ribosylation | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| jinfukang | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| bisphenol AF | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Aerosols | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Atrazine | decreases expression | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cocaine | affects expression | 1 |
| Doxorubicin | increases expression | 1 |
| Isoniazid | decreases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Lead | decreases expression | 1 |
| Lipopolysaccharides | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
11 unique, capped per target: 10 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2353025 | Binding | Inhibition of mitochondrial ETC complex 1 in human T47D cells assessed as inhibition of 1% O2-induced HIF1 activation at 30 uM incubated for 30 mins prior to 1% O2-challenge measured after 16 hrs by luciferase reporter assay | Semisynthetic studies identify mitochondria poisons from botanical dietary supplements–geranyloxycoumarins from Aegle marmelos. — Bioorg Med Chem |
| CHEMBL5210044 | Functional | Affinity Phenotypic Cellular interaction (Proliferation assay (CellTiter-Glo ATP assay in human lung H1299 cells)) EUB0000752a NDUFS2 | Affinity Phenotypic Cellular Literature for EUbOPEN Chemogenomics Library wave 3 |
Cellosaurus cell lines
8 cell lines: 5 cancer cell line, 2 transformed cell line, 1 finite cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_C0D2 | HEK293 NDUSF2 KO | Transformed cell line | Female |
| CVCL_D1P5 | Abcam K-562 NDUFS2 KO | Cancer cell line | Female |
| CVCL_D2KQ | Abcam Raji NDUFS2 KO | Cancer cell line | Male |
| CVCL_D9L4 | Ubigene HEK293 NDUFS2 KO | Transformed cell line | Female |
| CVCL_EQ48 | 8807 | Finite cell line | Female |
| CVCL_TA18 | HAP1 NDUFS2 (-) 1 | Cancer cell line | Male |
| CVCL_TA19 | HAP1 NDUFS2 (-) 2 | Cancer cell line | Male |
| CVCL_WQ07 | Abcam Jurkat NDUFS2 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
31 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT03293524 | PHASE3 | COMPLETED | Efficacy & Safety Study of Bilateral IVT Injection of GS010 in LHON Subjects Due to the ND4 Mutation for up to 1 Year |
| NCT03406104 | PHASE3 | COMPLETED | RESCUE and REVERSE Long-term Follow-up |
| NCT07406854 | PHASE3 | ACTIVE_NOT_RECRUITING | A Phase 3, Multicenter, Randomized, Double-Masked, Sham-Controlled Clinical Trial for Leber’s Hereditary Optic Neuropathy (LHON) Associated With ND4 Mutation |
| NCT05162768 | PHASE3 | COMPLETED | Study to Evaluate Efficacy and Safety of Elamipretide in Subjects With Primary Mitochondrial Disease From Nuclear DNA Mutations (nPMD) |
| NCT02176733 | PHASE2 | UNKNOWN | Trial of Cyclosporine in the Acute Phase of Leber Hereditary Optic Neuropathy |
| NCT02544217 | PHASE1 | COMPLETED | A Dose-escalating Clinical Trial With KH176 |
| NCT07258667 | PHASE1 | NOT_YET_RECRUITING | Pilot Study of the Efficacy of Nicotinamide (Vitamin B3) in Leber’s Hereditary Optic Neuropathy |
| NCT01064505 | PHASE1 | COMPLETED | Safety Study of a Single IVT Injection of QPI-1007 in Chronic Optic Nerve Atrophy and Recent Onset NAION Patients |
| NCT05147701 | PHASE1 | RECRUITING | Safety of Cultured Allogeneic Adult Umbilical Cord Derived Mesenchymal Stem Cells for NAION |
| NCT03153293 | PHASE2/PHASE3 | UNKNOWN | A Single Intravitreal Injection of rAAV2-ND4 for the Treatment of Leber’s Hereditary Optic Neuropathy |
| NCT02064569 | PHASE1/PHASE2 | COMPLETED | Safety Evaluation of Gene Therapy in Leber Hereditary Optic Neuropathy (LHON) Patients |
| NCT05293626 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Gene Therapy Clinical Trial for the Treatment of Leber’s Hereditary Optic Neuropathy Associated With ND4 Mutations |
| NCT05820152 | PHASE1/PHASE2 | TERMINATED | Gene Therapy Clinical Trial for the Treatment of Leber’s Hereditary Optic Neuropathy Associated With ND1 Mutations |
| NCT01267422 | Not specified | COMPLETED | Safety and Efficacy Study of rAAV2-ND4 Treatment of Leber Hereditary Optic Neuropathy (LHON) |
| NCT01803906 | Not specified | ENROLLING_BY_INVITATION | Tissue Sample Study for Mitochondrial Disorders |
| NCT01892943 | Not specified | COMPLETED | Leber Hereditary Optic Neuropathy (LHON) Historical Case Record Survey |
| NCT03011541 | Not specified | RECRUITING | Stem Cell Ophthalmology Treatment Study II |
| NCT03295071 | Not specified | COMPLETED | REALITY LHON Registry |
| NCT03428178 | Not specified | UNKNOWN | Efficacy Study of Gene Therapy for The Treatment of Acute LHON Onset Within Three Months |
| NCT03475173 | Not specified | RECRUITING | New Non-invasive Modalities for Assessing Retinal Structure and Function |
| NCT03672968 | Not specified | NO_LONGER_AVAILABLE | EAP_GS010_single Patient |
| NCT05554835 | Not specified | RECRUITING | Global Registry and Natural History Study for Mitochondrial Disorders |
| NCT06376279 | Not specified | ENROLLING_BY_INVITATION | Genetic Diagnosis in Inborn Errors of Metabolism |
| NCT06682819 | Not specified | RECRUITING | Metabolomics Analysis According to the Retinal Nerve Fiber Layer in Patients With NOHL Mutations (MétabOCT) |
| NCT02882477 | PHASE2/PHASE3 | UNKNOWN | Treatment of Wolfram Syndrome Type 2 With the Chelator Deferiprone and Incretin Based Therapy |
| NCT01834079 | PHASE1/PHASE2 | UNKNOWN | Study the Safety and Efficacy of Bone Marrow Derived Autologous Cells for the Treatment of Optic Nerve Disease |
| NCT04680143 | PHASE1/PHASE2 | COMPLETED | Systemic Erythropoietin Injection in Patients Having Optic Atrophy |
| NCT04580979 | Not specified | COMPLETED | Natural History Study of FDXR Mutation-related Mitochondriopathy |
| NCT04594590 | Not specified | COMPLETED | Natural History Study of SLC25A46 Mutation-related Mitochondriopathy |
| NCT04723160 | Not specified | COMPLETED | Computer Aided Diagnosis of Multiple Eye Fundus Diseases From Color Fundus Photograph |
| NCT06390579 | Not specified | COMPLETED | Building Research With Artificial Intelligence in Neuro-Ophthalmology |
Related Atlas pages
- Associated diseases: mitochondrial complex I deficiency, nuclear type 6, Leber hereditary optic neuropathy, mitochondrial complex I deficiency, nuclear type 1, Leigh syndrome with cardiomyopathy, mitochondrial disease, Leigh syndrome
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Leber hereditary optic neuropathy, Leber-like hereditary optic neuropathy, autosomal recessive 2, Leigh syndrome with cardiomyopathy, mitochondrial complex I deficiency, mitochondrial complex I deficiency, nuclear type 1, mitochondrial complex I deficiency, nuclear type 6