NEU4
gene geneOn this page
Summary
NEU4 (neuraminidase 4, HGNC:21328) is a protein-coding gene on chromosome 2q37.3, encoding Sialidase-4 (Q8WWR8). Exo-alpha-sialidase that catalyzes the hydrolytic cleavage of the terminal sialic acid (N-acetylneuraminic acid, Neu5Ac) of a glycan moiety in the catabolism of glycolipids, glycoproteins and oligosacharides.
The protein encoded by this gene belongs to a family of glycohydrolytic enzymes, which remove terminal sialic acid residues from various sialo derivatives, such as glycoproteins, glycolipids, oligosaccharides, and gangliosides. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene.
Source: NCBI Gene 129807 — RefSeq curated summary.
At a glance
- GWAS associations: 1
- Clinical variants (ClinVar): 143 total
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001167600
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21328 |
| Approved symbol | NEU4 |
| Name | neuraminidase 4 |
| Location | 2q37.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000204099 |
| Ensembl biotype | protein_coding |
| OMIM | 608527 |
| Entrez | 129807 |
Gene structure
Transcript identifiers
Ensembl transcripts: 29 — 24 protein_coding, 4 retained_intron, 1 nonsense_mediated_decay
ENST00000325935, ENST00000391969, ENST00000404257, ENST00000405370, ENST00000407683, ENST00000415936, ENST00000420288, ENST00000423583, ENST00000426032, ENST00000428592, ENST00000435855, ENST00000435894, ENST00000435934, ENST00000476542, ENST00000488997, ENST00000494678, ENST00000618597, ENST00000859313, ENST00000859314, ENST00000859315, ENST00000859316, ENST00000859317, ENST00000859318, ENST00000859319, ENST00000859320, ENST00000859321, ENST00000859322, ENST00000859323, ENST00000966408
RefSeq mRNA: 5 — MANE Select: NM_001167600
NM_001167599, NM_001167600, NM_001167601, NM_001167602, NM_080741
CCDS: CCDS2553, CCDS54441, CCDS54442
Canonical transcript exons
ENST00000407683 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001318258 | 241814892 | 241815147 |
| ENSE00001548171 | 241816051 | 241817413 |
| ENSE00002692537 | 241809193 | 241809274 |
| ENSE00003487727 | 241814482 | 241814685 |
Expression profiles
Bgee: expression breadth ubiquitous, 126 present calls, max score 95.33.
FANTOM5 (CAGE): breadth broad, TPM avg 1.4922 / max 120.9200, expressed in 227 samples.
FANTOM5 promoters (5 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 26575 | 0.8266 | 109 |
| 26572 | 0.2939 | 29 |
| 26574 | 0.2718 | 88 |
| 26573 | 0.0720 | 17 |
| 26571 | 0.0279 | 14 |
Top tissues by expression
131 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 95.33 | gold quality |
| right lobe of liver | UBERON:0001114 | 94.05 | gold quality |
| liver | UBERON:0002107 | 91.22 | gold quality |
| substantia nigra | UBERON:0002038 | 84.61 | gold quality |
| duodenum | UBERON:0002114 | 84.38 | gold quality |
| temporal lobe | UBERON:0001871 | 83.93 | gold quality |
| amygdala | UBERON:0001876 | 83.89 | gold quality |
| Ammon’s horn | UBERON:0001954 | 83.80 | gold quality |
| hypothalamus | UBERON:0001898 | 83.10 | gold quality |
| transverse colon | UBERON:0001157 | 82.62 | gold quality |
| putamen | UBERON:0001874 | 81.50 | gold quality |
| anterior cingulate cortex | UBERON:0009835 | 80.69 | gold quality |
| C1 segment of cervical spinal cord | UBERON:0006469 | 80.28 | gold quality |
| right frontal lobe | UBERON:0002810 | 79.64 | gold quality |
| nucleus accumbens | UBERON:0001882 | 79.14 | gold quality |
| caudate nucleus | UBERON:0001873 | 78.32 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 78.26 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 77.31 | gold quality |
| cerebral cortex | UBERON:0000956 | 77.23 | gold quality |
| primary visual cortex | UBERON:0002436 | 76.30 | gold quality |
| rectum | UBERON:0001052 | 76.08 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 75.82 | gold quality |
| brain | UBERON:0000955 | 75.80 | gold quality |
| frontal cortex | UBERON:0001870 | 74.13 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 74.01 | gold quality |
| small intestine | UBERON:0002108 | 73.19 | gold quality |
| cerebellum | UBERON:0002037 | 72.97 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 72.91 | gold quality |
| cerebellar cortex | UBERON:0002129 | 72.90 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 72.44 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-25 | yes | 15.18 |
| E-ANND-3 | no | 1.22 |
Regulation
Is transcription factor: no
Literature-anchored findings (GeneRIF, showing 14)
- The NEU4 gene, identified by searching sequence databases for entries showing homologies to the human cytosolic sialidase NEU2, maps in 2q37 and encodes a 484-residue protein. (PMID:14962670)
- Neu4 is a novel human lysosomal lumen sialidase (PMID:15213228)
- Data show that the differentiation of monocytes into macrophages is associated with regulation of the expression of at least three distinct cellular sialidases, Neu1, 3, and 4, with specific up-regulation of the enzyme activity of only Neu1. (PMID:15885103)
- related to malignancy and may be potential targets for cancer diagnosis and therapy (PMID:18651674)
- The NEU4 long form localizes in mitochondria, while the short form is also associated with the endoplasmic reticulum. (PMID:19797320)
- NEU4 plays an important role in control of sialyl Lewis antigen expression and its impairment in colon cancer (PMID:21521691)
- Overexpression of NEU4 is associated with neuroblastoma. (PMID:22287118)
- NEU4 is involved in regulation of neuronal function by polySia degradation in mammals. (PMID:22393058)
- The results demonstrate that the proline-rich region can also enhance cell proliferation and retinoic acid (RA)-induced neuronal differentiation and it is also involved in NEU4 interaction with Akt. (PMID:24030392)
- The silencing or chemical inhibition of NEU4 changes the entire glycosylation pattern of proteins and lipids, making it more similar to that of differentiated GBM cells and drastically reduces GSCs survival. (PMID:25144716)
- The most potent compound tested targeted the human Neu4 isoenzyme, and was able to substantially reduce the rate of cell migration. We found that the lateral mobility of integrins was reduced by treatment of cells with Neu3, suggesting that Neu3 enzyme activity resulted in changes to integrin-co-receptor or integrin-cytoskeleton interactions (PMID:27344026)
- Synergistic activation of the NEU4 promoter by p73 and AP2 in colon cancer cells. (PMID:30700826)
- Neuraminidase 4 (NEU4): new biological and physiological player. (PMID:36728702)
- Biomarkers of ulcerative colitis disease activity CXCL1, CYP2R1, LPCAT1, and NEU4 and their relationship to immune infiltrates. (PMID:37495756)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | neu4 | ENSDARG00000057677 |
| mus_musculus | Neu4 | ENSMUSG00000034000 |
| rattus_norvegicus | Neu4 | ENSRNOG00000019031 |
Paralogs (3): NEU2 (ENSG00000115488), NEU3 (ENSG00000162139), NEU1 (ENSG00000204386)
Protein
Protein identifiers
Sialidase-4 — Q8WWR8 (reviewed: Q8WWR8)
Alternative names: N-acetyl-alpha-neuraminidase 4
All UniProt accessions (10): B3KR54, C9IZG9, C9J295, C9J2R4, C9J2V4, Q8WWR8, C9J5X2, C9JEA3, C9JRN9, F8WE58
UniProt curated annotations — full annotation on UniProt →
Function. Exo-alpha-sialidase that catalyzes the hydrolytic cleavage of the terminal sialic acid (N-acetylneuraminic acid, Neu5Ac) of a glycan moiety in the catabolism of glycolipids, glycoproteins and oligosacharides. Efficiently hydrolyzes gangliosides including alpha-(2->3)-sialylated GD1a and GM3 and alpha-(2->8)-sialylated GD3. Hydrolyzes poly-alpha-(2->8)-sialylated neural cell adhesion molecule NCAM1 likely at growth cones, suppressing neurite outgrowth in hippocampal neurons. May desialylate sialyl Lewis A and X antigens at the cell surface, down-regulating these glycan epitopes recognized by SELE/E selectin in the initiation of cell adhesion and extravasation. Has sialidase activity toward mucin, fetuin and sialyllactose.
Subcellular location. Cell membrane. Endoplasmic reticulum membrane. Microsome membrane. Mitochondrion membrane. Cell projection. Neuron projection Mitochondrion inner membrane. Mitochondrion outer membrane. Lysosome lumen.
Tissue specificity. Predominant form in liver. Also expressed in brain, kidney and colon. Highly expressed in brain and at lower levels in kidney and liver.
Post-translational modifications. N-glycosylated.
Induction. Down-regulated during monocyte to macrophage differentiation.
Similarity. Belongs to the glycosyl hydrolase 33 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8WWR8-1 | 1 | yes |
| Q8WWR8-2 | 2 | |
| Q8WWR8-3 | 3 |
RefSeq proteins (5): NP_001161071, NP_001161072, NP_001161073, NP_001161074, NP_542779 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011040 | Sialidase | Domain |
| IPR026856 | Sialidase_fam | Family |
| IPR036278 | Sialidase_sf | Homologous_superfamily |
Pfam: PF13088
Enzyme classification (BRENDA):
- EC 3.2.1.18 — exo-alpha-sialidase (BRENDA: 87 organisms, 524 substrates, 467 inhibitors, 232 Km, 45 kcat entries)
Substrate kinetics (BRENDA)
90 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 4-METHYLUMBELLIFERYL ALPHA-D-N-ACETYLNEURAMINIC | 0.018–3.3 | 22 |
| 4-METHYLUMBELLIFERYL-ALPHA-D-N-ACETYLNEURAMINIC | 0.0002–4.9 | 22 |
| FETUIN | 0.0005–6.7 | 11 |
| 4-METHYLUMBELLIFERYL N-ACETYLNEURAMINIC ACID | 0.0103–0.5652 | 9 |
| SIALYL-ALPHA-2,6-LACTOSE | 0.13–3.5 | 9 |
| 2-(4-METHYLUMBELLIFERYL)-ALPHA-D-N-ACETYLNEURAMI | 0.0063–0.16 | 8 |
| SIALYL-ALPHA-2,3-LACTOSE | 0.1–4.9 | 8 |
| ALPHA-SIALYLLACTOSE | 0.5–3.3 | 5 |
| SIALYLLACTOSE | 0.52–2.38 | 5 |
| 5-BROMO-4-CHLORO-INDOLYL BETA-D-GALACTOPYRANOSYL | 0.08–0.121 | 4 |
| GANGLIOSIDE GD1B | 0.1–0.59 | 4 |
| GD1A | 0.02–1.75 | 4 |
| N-ACETYLNEURAMINYLLACTOSE | 0.78–3 | 4 |
| 2’-(4-METHYLUMBELLIFERYL)-ALPHA-D-N-ACETYLNEURAM | 0.028–1.4 | 3 |
| 4-METHYLUMBELLIFERYL N-ACETYL-ALPHA-D-NEURAMINIC | 0.06–1.508 | 3 |
Catalyzed reactions (Rhea), 8 shown:
- a ganglioside GD1a + H2O = a ganglioside GM1 + N-acetylneuraminate (RHEA:47832)
- a ganglioside GD1a (d18:1(4E)) + H2O = a ganglioside GM1 (d18:1(4E)) + N-acetylneuraminate (RHEA:47856)
- a ganglioside GM3 (d18:1(4E)) + H2O = a beta-D-Gal-(1->4)-beta-D-Glc-(1<->1)-Cer(d18:1(4E)) + N-acetylneuraminate (RHEA:47900)
- a ganglioside GM2 (d18:1(4E)) + H2O = a ganglioside GA2 (d18:1(4E)) + N-acetylneuraminate (RHEA:48068)
- a ganglioside GD3 + H2O = a ganglioside GM3 + N-acetylneuraminate (RHEA:48120)
- a ganglioside GD3 (d18:1(4E)) + H2O = a ganglioside GM3 (d18:1(4E)) + N-acetylneuraminate (RHEA:48124)
- a ganglioside GM3 + H2O = a beta-D-galactosyl-(1->4)-beta-D-glucosyl-(1<->1)-ceramide + N-acetylneuraminate (RHEA:48136)
- a ganglioside GM2 + H2O = a ganglioside GA2 + N-acetylneuraminate (RHEA:48172)
UniProt features (23 total): binding site 7, active site 4, repeat 3, splice variant 2, chain 1, sequence variant 1, mutagenesis site 1, sequence conflict 1, region of interest 1, short sequence motif 1, compositionally biased region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8WWR8-F1 | 83.42 | 0.71 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (4): 440; 47 (proton acceptor); 48 (proton acceptor); 419 (nucleophile)
Ligand- & substrate-binding residues (7): 23; 43; 177; 179; 222; 242; 389
Mutagenesis-validated functional residues (1):
| Position | Phenotype |
|---|---|
| 5 | impairs mitochondrial targeting. |
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-4085001 | Sialic acid metabolism |
| R-HSA-9840310 | Glycosphingolipid catabolism |
| R-HSA-392499 | Metabolism of proteins |
| R-HSA-446193 | Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| R-HSA-446203 | Asparagine N-linked glycosylation |
| R-HSA-446219 | Synthesis of substrates in N-glycan biosythesis |
| R-HSA-597592 | Post-translational protein modification |
MSigDB gene sets: 93 (showing top):
GSE37336_LY6C_POS_VS_NEG_NAIVE_CD4_TCELL_DN, GOBP_CERAMIDE_CATABOLIC_PROCESS, GOBP_OLIGOSACCHARIDE_METABOLIC_PROCESS, GOBP_MACROMOLECULE_CATABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, GOBP_OLIGOSACCHARIDE_CATABOLIC_PROCESS, GOBP_NEUROGENESIS, GOBP_MEMBRANE_LIPID_CATABOLIC_PROCESS, GOBP_CARBOHYDRATE_DERIVATIVE_METABOLIC_PROCESS, GOBP_NEGATIVE_REGULATION_OF_CELLULAR_COMPONENT_ORGANIZATION, GOBP_GLYCOLIPID_CATABOLIC_PROCESS, GOBP_REGULATION_OF_CELL_PROJECTION_ORGANIZATION, GOBP_SPHINGOLIPID_METABOLIC_PROCESS, GOBP_AMIDE_METABOLIC_PROCESS, GOBP_CARBOHYDRATE_METABOLIC_PROCESS
GO Biological Process (6): glycoprotein catabolic process (GO:0006516), ganglioside catabolic process (GO:0006689), oligosaccharide catabolic process (GO:0009313), negative regulation of neuron projection development (GO:0010977), lipid metabolic process (GO:0006629), lipid catabolic process (GO:0016042)
GO Molecular Function (4): exo-alpha-sialidase activity (GO:0004308), protein binding (GO:0005515), hydrolase activity (GO:0016787), hydrolase activity, acting on glycosyl bonds (GO:0016798)
GO Cellular Component (14): cytoplasm (GO:0005737), mitochondrial outer membrane (GO:0005741), mitochondrial inner membrane (GO:0005743), lysosome (GO:0005764), endoplasmic reticulum membrane (GO:0005789), plasma membrane (GO:0005886), membrane (GO:0016020), organelle inner membrane (GO:0019866), neuron projection (GO:0043005), lysosomal lumen (GO:0043202), mitochondrion (GO:0005739), endoplasmic reticulum (GO:0005783), mitochondrial membrane (GO:0031966), cell projection (GO:0042995)
Reactome top-level categories
Rollup of top-6 pathways:
| Category | Pathways |
|---|---|
| Synthesis of substrates in N-glycan biosythesis | 1 |
| Glycosphingolipid metabolism | 1 |
| Asparagine N-linked glycosylation | 1 |
| Post-translational protein modification | 1 |
| Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein | 1 |
| Metabolism of proteins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| organelle membrane | 3 |
| mitochondrial membrane | 2 |
| cytoplasm | 2 |
| intracellular membrane-bounded organelle | 2 |
| glycoprotein metabolic process | 1 |
| protein catabolic process | 1 |
| carbohydrate derivative catabolic process | 1 |
| ganglioside metabolic process | 1 |
| glycosphingolipid catabolic process | 1 |
| ceramide catabolic process | 1 |
| oligosaccharide metabolic process | 1 |
| carbohydrate catabolic process | 1 |
| regulation of neuron projection development | 1 |
| neuron projection development | 1 |
| negative regulation of cell projection organization | 1 |
| primary metabolic process | 1 |
| lipid metabolic process | 1 |
| catabolic process | 1 |
| alpha-sialidase activity | 1 |
| binding | 1 |
| catalytic activity | 1 |
| hydrolase activity | 1 |
| intracellular anatomical structure | 1 |
| organelle outer membrane | 1 |
| organelle inner membrane | 1 |
| lytic vacuole | 1 |
| nuclear outer membrane-endoplasmic reticulum membrane network | 1 |
| endoplasmic reticulum subcompartment | 1 |
| membrane | 1 |
| cell periphery | 1 |
| organelle envelope | 1 |
| plasma membrane bounded cell projection | 1 |
| lysosome | 1 |
| vacuolar lumen | 1 |
| endomembrane system | 1 |
| mitochondrion | 1 |
| mitochondrial envelope | 1 |
Protein interactions and networks
STRING
944 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NEU4 | GAL3ST2 | Q9H3Q3 | 892 |
| NEU4 | DTYMK | P23919 | 890 |
| NEU4 | CTSA | P10619 | 689 |
| NEU4 | ST3GAL1 | Q11201 | 630 |
| NEU4 | ST3GAL2 | Q16842 | 594 |
| NEU4 | CASD1 | Q96PB1 | 568 |
| NEU4 | ST3GAL3 | Q11203 | 547 |
| NEU4 | ST8SIA1 | Q92185 | 513 |
| NEU4 | ST6GAL1 | P15907 | 500 |
| NEU4 | ST3GAL4 | Q11206 | 498 |
| NEU4 | ST6GAL2 | Q96JF0 | 495 |
| NEU4 | ST3GAL6 | Q9Y274 | 478 |
| NEU4 | ST3GAL5 | Q9UNP4 | 473 |
| NEU4 | NEU1 | Q99519 | 458 |
| NEU4 | CMAS | Q8NFW8 | 457 |
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MDFI | NEU4 | psi-mi:“MI:0915”(physical association) | 0.710 |
| NEU4 | MDFI | psi-mi:“MI:0915”(physical association) | 0.710 |
| RHOXF2 | NEU4 | psi-mi:“MI:0915”(physical association) | 0.550 |
| PLSCR1 | NEU4 | psi-mi:“MI:0915”(physical association) | 0.510 |
| NEU4 | PLSCR1 | psi-mi:“MI:0915”(physical association) | 0.510 |
| Dlg4 | NEU4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CFTR | NEU4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| RBPMS | NEU4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| NEU4 | AIP | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (46): NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Two-hybrid), NEU4 (Affinity Capture-Western), MDFI (Two-hybrid), TRIP6 (Two-hybrid), RPUSD2 (Affinity Capture-MS), ZPR1 (Affinity Capture-MS)
ESM2 similar proteins: A0JPF9, A5PJN5, A6NFQ2, A6QLU7, A6QQ07, A6QQV6, A7Z052, O95479, O97859, P16452, P49753, P56201, Q32N48, Q32PY6, Q3U3W5, Q3UY23, Q5HZW3, Q5R8R3, Q5RJG7, Q5S6T3, Q5U4E8, Q5XFW6, Q5XIA3, Q64393, Q64627, Q68G58, Q865R1, Q8BZL1, Q8BZW8, Q8C0L6, Q8CAE2, Q8CFX1, Q8NFF5, Q8VDG7, Q8WWR8, Q921K8, Q922X9, Q99ME2, Q99MI9, Q99PW5
Diamond homologs: A5PF10, A6BMK7, O35657, P62575, P62576, Q02834, Q5RAF4, Q8BZL1, Q8WWR8, Q99519, Q99PW3, D4B4P1, O97859, Q4WQS0, Q64393, Q64627, Q99PW5, Q9JMH3, Q9JMH7, Q9UQ49, Q9Y3R4, P29768, P31206
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
143 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 128 |
| Likely benign | 7 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1261 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:241813867:G:GT | donor_gain | 1.0000 |
| 2:241813926:G:GT | donor_gain | 1.0000 |
| 2:241815146:GG:G | donor_gain | 1.0000 |
| 2:241815147:GG:G | donor_gain | 1.0000 |
| 2:241816049:A:AG | acceptor_gain | 1.0000 |
| 2:241816050:G:GG | acceptor_gain | 1.0000 |
| 2:241816050:GACT:G | acceptor_gain | 1.0000 |
| 2:241813867:G:T | donor_gain | 0.9900 |
| 2:241813926:G:T | donor_gain | 0.9900 |
| 2:241813932:G:GT | donor_gain | 0.9900 |
| 2:241814686:G:GG | donor_gain | 0.9900 |
| 2:241814885:T:TA | acceptor_gain | 0.9900 |
| 2:241814890:AGTGG:A | acceptor_gain | 0.9900 |
| 2:241814891:GTGGG:G | acceptor_gain | 0.9900 |
| 2:241814997:ATCGC:A | acceptor_gain | 0.9900 |
| 2:241815001:C:CA | acceptor_gain | 0.9900 |
| 2:241815123:G:GT | donor_gain | 0.9900 |
| 2:241815134:T:TA | donor_gain | 0.9900 |
| 2:241815135:G:GA | donor_gain | 0.9900 |
| 2:241815148:G:T | donor_gain | 0.9900 |
| 2:241816049:A:AT | acceptor_loss | 0.9900 |
| 2:241816049:AGACT:A | acceptor_gain | 0.9900 |
| 2:241816050:G:GA | acceptor_loss | 0.9900 |
| 2:241816050:GACTG:G | acceptor_gain | 0.9900 |
| 2:241813866:GGAA:G | donor_gain | 0.9800 |
| 2:241813873:G:GT | donor_gain | 0.9800 |
| 2:241813925:GGAA:G | donor_gain | 0.9800 |
| 2:241813927:A:T | donor_gain | 0.9800 |
| 2:241814655:G:GT | donor_gain | 0.9800 |
| 2:241814682:GCGG:G | donor_gain | 0.9800 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000377147 (2:241817512 A>T), RS1000453104 (2:241809587 G>A), RS1000825328 (2:241814559 C>G,T), RS1000858144 (2:241810018 C>T), RS1000905827 (2:241809774 A>G), RS1001386039 (2:241810350 C>A,T), RS1001732303 (2:241813074 C>G), RS1001858683 (2:241809291 TAG>T), RS1001990576 (2:241811209 T>A), RS1002108318 (2:241808188 A>C,G), RS1002192863 (2:241812956 G>C), RS1002466182 (2:241811355 G>A,C,T), RS1002922341 (2:241808520 T>C), RS1003063548 (2:241812290 T>C), RS1003148275 (2:241811934 G>A,T)
Disease associations
OMIM: gene MIM:608527 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST009798_13 | Asthma | 5.000000e-36 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4174 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 42,528 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL222813 | ZANAMIVIR | 4 | 42,528 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
ChEMBL bioactivities
54 potent at pChembl≥5 of 105 total, top 31 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.52 | Ki | 30 | nM | CHEMBL1289650 |
| 7.22 | Ki | 60 | nM | CHEMBL1289754 |
| 6.80 | IC50 | 160 | nM | CHEMBL1289650 |
| 6.58 | Ki | 260 | nM | CHEMBL4076203 |
| 6.28 | IC50 | 520 | nM | CHEMBL4076203 |
| 6.13 | IC50 | 740 | nM | CHEMBL1289650 |
| 6.09 | IC50 | 810 | nM | CHEMBL1289754 |
| 6.01 | IC50 | 970 | nM | CHEMBL4062382 |
| 6.00 | Ki | 1000 | nM | NEU5AC2EN |
| 5.96 | IC50 | 1100 | nM | CHEMBL4454277 |
| 5.89 | IC50 | 1300 | nM | CHEMBL4096864 |
| 5.77 | IC50 | 1700 | nM | CHEMBL1289649 |
| 5.68 | IC50 | 2100 | nM | CHEMBL1289755 |
| 5.64 | IC50 | 2300 | nM | CHEMBL1289428 |
| 5.58 | IC50 | 2600 | nM | CHEMBL4060974 |
| 5.58 | IC50 | 2600 | nM | CHEMBL4285561 |
| 5.52 | IC50 | 3000 | nM | CHEMBL4071732 |
| 5.44 | IC50 | 3600 | nM | CHEMBL1289540 |
| 5.43 | IC50 | 3700 | nM | CHEMBL4076203 |
| 5.43 | IC50 | 3700 | nM | CHEMBL4454422 |
| 5.41 | IC50 | 3900 | nM | CHEMBL4089157 |
| 5.40 | IC50 | 4000 | nM | CHEMBL1289861 |
| 5.35 | IC50 | 4500 | nM | CHEMBL1289862 |
| 5.30 | IC50 | 5000 | nM | CHEMBL4069646 |
| 5.30 | Ki | 5000 | nM | CHEMBL4099818 |
| 5.25 | IC50 | 5600 | nM | CHEMBL1289862 |
| 5.25 | IC50 | 5600 | nM | CHEMBL4467946 |
| 5.24 | Ki | 5800 | nM | NEU5AC2EN |
| 5.23 | IC50 | 5900 | nM | CHEMBL4099818 |
| 5.08 | IC50 | 8300 | nM | NEU5AC2EN |
| 5.08 | IC50 | 8400 | nM | CHEMBL4288490 |
PubChem BioAssay actives
33 with measured affinity, of 182 total; 19 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(hydroxymethyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 748616: Inhibition of human NEU4 using 4-MU-NANA as substrate measured every 30 seconds for 60 mins by fluorescence plate reader analysis | ki | 0.0300 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(2-hydroxyethyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 748616: Inhibition of human NEU4 using 4-MU-NANA as substrate measured every 30 seconds for 60 mins by fluorescence plate reader analysis | ki | 0.0600 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(4-phenylphenyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490011: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured every minute for 30 mins by fluorescence based assay | ki | 0.2600 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(4-phenoxyphenyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490015: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured after 30 mins by fluorescence based assay | ic50 | 0.9700 | uM |
| (2R,3R,4S)-3-acetamido-4-hydroxy-2-[(1R,2R)-1,2,3-trihydroxypropyl]-3,4-dihydro-2H-pyran-6-carboxylic acid | 728980: Inhibition of human neuraminidase 4 using 4MU-NANA as substrate measured for every 30 seconds for 60 mins by fluorescence assay | ki | 1.0000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-3-[4-(4-fluorophenyl)triazol-1-yl]-1,2-dihydroxypropyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490015: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured after 30 mins by fluorescence based assay | ic50 | 1.3000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(phenoxymethyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 748619: Inhibition of human NEU4 using 4-MU-NANA as substrate preincubated for 15 mins before substrate addition measured after 30 mins by fluorescence plate reader analysis | ic50 | 1.7000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(3-hydroxypropyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 748619: Inhibition of human NEU4 using 4-MU-NANA as substrate preincubated for 15 mins before substrate addition measured after 30 mins by fluorescence plate reader analysis | ic50 | 2.1000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-(4-phenyltriazol-1-yl)propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 748619: Inhibition of human NEU4 using 4-MU-NANA as substrate preincubated for 15 mins before substrate addition measured after 30 mins by fluorescence plate reader analysis | ic50 | 2.3000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(4-methoxyphenyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490015: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured after 30 mins by fluorescence based assay | ic50 | 2.6000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-(4-pentyltriazol-1-yl)propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1415004: Inhibition of MBP-fused human NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition and measured after 30 mins by fluorescence assay | ic50 | 2.6000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-3-[4-(4-carboxyphenyl)triazol-1-yl]-1,2-dihydroxypropyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490015: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured after 30 mins by fluorescence based assay | ic50 | 3.0000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-3-(4-ethoxytriazol-1-yl)-1,2-dihydroxypropyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 748619: Inhibition of human NEU4 using 4-MU-NANA as substrate preincubated for 15 mins before substrate addition measured after 30 mins by fluorescence plate reader analysis | ic50 | 3.6000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(4-methylphenyl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490015: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured after 30 mins by fluorescence based assay | ic50 | 3.9000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-(2-hydroxypropan-2-yl)triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 748619: Inhibition of human NEU4 using 4-MU-NANA as substrate preincubated for 15 mins before substrate addition measured after 30 mins by fluorescence plate reader analysis | ic50 | 4.0000 | uM |
| (2R,3R,4S)-3-[(2-azidoacetyl)amino]-4-hydroxy-2-[(1R,2R)-1,2,3-trihydroxypropyl]-3,4-dihydro-2H-pyran-6-carboxylic acid | 748619: Inhibition of human NEU4 using 4-MU-NANA as substrate preincubated for 15 mins before substrate addition measured after 30 mins by fluorescence plate reader analysis | ic50 | 4.5000 | uM |
| (2R,3R,4S)-3-acetamido-2-[(1R,2R)-1,2-dihydroxy-3-[4-[4-(trifluoromethyl)phenyl]triazol-1-yl]propyl]-4-hydroxy-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490015: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured after 30 mins by fluorescence based assay | ic50 | 5.0000 | uM |
| (2R,3R,4S)-3-acetamido-4-(diaminomethylideneamino)-2-[(1R,2R)-1,2-dihydroxy-3-[4-(4-phenylphenyl)triazol-1-yl]propyl]-3,4-dihydro-2H-pyran-6-carboxylic acid | 1490011: Inhibition of human N-terminal MBP-fused NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition measured every minute for 30 mins by fluorescence based assay | ki | 5.0000 | uM |
| (2R,3R,4S)-3-(butanoylamino)-4-hydroxy-2-[(1R,2R)-1,2,3-trihydroxypropyl]-3,4-dihydro-2H-pyran-6-carboxylic acid | 1415004: Inhibition of MBP-fused human NEU4 expressed in Escherichia coli using 4MU-NANA as substrate preincubated for 15 mins followed by substrate addition and measured after 30 mins by fluorescence assay | ic50 | 8.4000 | uM |
CTD chemical–gene interactions
27 total (human), top 27 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation, increases expression | 3 |
| Cyclosporine | decreases expression, decreases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| TL8-506 | affects cotreatment, increases expression | 1 |
| methyleugenol | decreases expression | 1 |
| propionaldehyde | increases expression | 1 |
| bisphenol A | affects expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects response to substance, increases expression, affects cotreatment | 1 |
| licochalcone B | decreases expression | 1 |
| bisphenol S | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Arbutin | increases expression | 1 |
| Lipopolysaccharides | affects response to substance, affects cotreatment, increases expression | 1 |
| Malathion | increases expression | 1 |
| N-Nitrosopyrrolidine | decreases expression | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Tretinoin | increases expression | 1 |
| Triclosan | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | decreases expression, increases methylation | 1 |
| Okadaic Acid | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
ChEMBL screening assays
31 unique, capped per target: 31 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1060577 | Binding | Inhibition of human NEU4 transiently transfected in HEK293 cells at 1 mM by fluorimetric analysis | Human sialidase inhibitors: design, synthesis, and biological evaluation of 4-acetamido-5-acylamido-2-fluoro benzoic acids. — Bioorg Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.