NFATC2IP-AS1

Summary

NFATC2IP-AS1 (NFATC2IP antisense RNA 1, HGNC:56085) is a long non-coding RNA gene on chromosome 16p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56085
Approved symbol	NFATC2IP-AS1
Name	NFATC2IP antisense RNA 1
Location	16p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260853
Ensembl biotype	lncRNA
Entrez	123706545
RNAcentral	URS00026A216C — lncRNA, 2126 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000568057, ENST00000569974, ENST00000651604

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000568057 — 2 exons

Exon	Start	End
ENSE00002575691	28957602	28957837
ENSE00002585610	28956738	28957074

Expression profiles

Bgee: expression breadth ubiquitous, 134 present calls, max score 87.37.

Top tissues by expression

134 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	87.37	gold quality
colonic epithelium	UBERON:0000397	85.15	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.93	gold quality
tonsil	UBERON:0002372	83.81	gold quality
bone marrow	UBERON:0002371	83.34	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.07	gold quality
sural nerve	UBERON:0015488	82.02	gold quality
granulocyte	CL:0000094	81.64	gold quality
skeletal muscle tissue	UBERON:0001134	80.22	gold quality
vermiform appendix	UBERON:0001154	79.34	gold quality
endometrium	UBERON:0001295	79.29	gold quality
monocyte	CL:0000576	78.75	gold quality
small intestine	UBERON:0002108	78.70	gold quality
muscle tissue	UBERON:0002385	78.60	gold quality
small intestine Peyer’s patch	UBERON:0003454	78.39	gold quality
leukocyte	CL:0000738	78.08	gold quality
uterine cervix	UBERON:0000002	77.63	gold quality
transverse colon	UBERON:0001157	77.38	gold quality
urinary bladder	UBERON:0001255	77.34	gold quality
spleen	UBERON:0002106	77.10	gold quality
blood	UBERON:0000178	77.06	gold quality
right ovary	UBERON:0002118	77.06	gold quality
left ovary	UBERON:0002119	77.06	gold quality
ovary	UBERON:0000992	76.79	gold quality
right hemisphere of cerebellum	UBERON:0014890	76.73	gold quality
cerebellar hemisphere	UBERON:0002245	76.54	gold quality
cerebellar cortex	UBERON:0002129	76.51	gold quality
cerebellum	UBERON:0002037	76.46	gold quality
intestine	UBERON:0000160	76.42	gold quality
body of uterus	UBERON:0009853	76.38	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.