NHERF4
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Also known as FLJ22756IKEPPNaPi-Cap2
Summary
NHERF4 (NHERF family PDZ scaffold protein 4, HGNC:19891) is a protein-coding gene on chromosome 11q23.3, encoding Na(+)/H(+) exchange regulatory cofactor NHE-RF4 (Q86UT5). Acts as a regulatory protein that associates with GUCY2C and negatively modulates its heat-stable enterotoxin-mediated activation.
Guanylyl cyclase C (GCC, or GUCY2C; MIM 601330) produces cGMP following the binding of either endogenous ligands or heat-stable enterotoxins secreted by E. coli and other enteric bacteria. Activation of GCC initiates a signaling cascade that leads to phosphorylation of the cystic fibrosis transmembrane conductance regulator (CFTR; MIM 602421), followed by a net efflux of ions and water into the intestinal lumen. IKEPP is a regulatory protein that associates with GCC and regulates the amount of cGMP produced following receptor stimulation (Scott et al., 2002 [PubMed 11950846]).
Source: NCBI Gene 79849 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 103 total
- MANE Select transcript:
NM_001168468
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:19891 |
| Approved symbol | NHERF4 |
| Name | NHERF family PDZ scaffold protein 4 |
| Location | 11q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FLJ22756, IKEPP, NaPi-Cap2 |
| Ensembl gene | ENSG00000172367 |
| Ensembl biotype | protein_coding |
| OMIM | 607146 |
| Entrez | 79849 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 9 retained_intron, 4 protein_coding, 1 nonsense_mediated_decay
ENST00000322712, ENST00000355547, ENST00000525131, ENST00000526279, ENST00000526836, ENST00000527028, ENST00000527308, ENST00000527951, ENST00000528730, ENST00000529098, ENST00000529573, ENST00000531114, ENST00000533688, ENST00000534790
RefSeq mRNA: 2 — MANE Select: NM_001168468
NM_001168468, NM_024791
CCDS: CCDS53719, CCDS8417
Canonical transcript exons
ENST00000355547 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001243980 | 119188355 | 119188551 |
| ENSE00001243987 | 119187940 | 119188144 |
| ENSE00003509001 | 119187564 | 119187700 |
| ENSE00003519123 | 119187270 | 119187459 |
| ENSE00003535270 | 119188640 | 119188867 |
| ENSE00003609116 | 119186092 | 119186165 |
| ENSE00003617440 | 119189005 | 119189205 |
| ENSE00003622123 | 119185925 | 119185952 |
| ENSE00003656219 | 119186479 | 119186690 |
| ENSE00003847504 | 119185475 | 119185510 |
| ENSE00003848671 | 119189463 | 119190213 |
Expression profiles
Bgee: expression breadth ubiquitous, 129 present calls, max score 95.92.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2308 / max 69.0380, expressed in 35 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 117104 | 0.1832 | 31 |
| 117103 | 0.0411 | 19 |
| 117102 | 0.0064 | 4 |
Top tissues by expression
256 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| mucosa of transverse colon | UBERON:0004991 | 95.92 | gold quality |
| duodenum | UBERON:0002114 | 91.43 | gold quality |
| rectum | UBERON:0001052 | 91.35 | gold quality |
| ileal mucosa | UBERON:0000331 | 90.70 | gold quality |
| right uterine tube | UBERON:0001302 | 88.46 | gold quality |
| jejunal mucosa | UBERON:0000399 | 87.44 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 87.31 | gold quality |
| small intestine | UBERON:0002108 | 86.50 | gold quality |
| transverse colon | UBERON:0001157 | 86.02 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 84.19 | gold quality |
| gall bladder | UBERON:0002110 | 83.51 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 79.71 | gold quality |
| buccal mucosa cell | CL:0002336 | 78.72 | gold quality |
| colonic mucosa | UBERON:0000317 | 78.59 | gold quality |
| jejunum | UBERON:0002115 | 78.50 | gold quality |
| triceps brachii | UBERON:0001509 | 78.22 | gold quality |
| kidney | UBERON:0002113 | 78.22 | gold quality |
| gluteal muscle | UBERON:0002000 | 77.83 | gold quality |
| cervix squamous epithelium | UBERON:0006922 | 77.71 | gold quality |
| pancreatic ductal cell | CL:0002079 | 77.60 | silver quality |
| mucosa of sigmoid colon | UBERON:0004993 | 77.05 | gold quality |
| intestine | UBERON:0000160 | 75.82 | gold quality |
| kidney epithelium | UBERON:0004819 | 73.72 | silver quality |
| nephron tubule | UBERON:0001231 | 73.66 | silver quality |
| cortex of kidney | UBERON:0001225 | 73.58 | gold quality |
| cerebellar vermis | UBERON:0004720 | 73.46 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 73.25 | gold quality |
| large intestine | UBERON:0000059 | 72.39 | gold quality |
| endothelial cell | CL:0000115 | 72.31 | gold quality |
| metanephros cortex | UBERON:0010533 | 72.21 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 4.48 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
17 targeting NHERF4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-4659A-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4659B-3P | 99.80 | 72.62 | 4248 |
| HSA-MIR-4319 | 99.76 | 69.83 | 2586 |
| HSA-MIR-12124 | 99.68 | 69.17 | 2700 |
| HSA-MIR-4276 | 99.56 | 67.66 | 2514 |
| HSA-MIR-519D-5P | 99.41 | 69.30 | 2057 |
| HSA-MIR-125A-5P | 99.36 | 70.59 | 1640 |
| HSA-MIR-125B-5P | 99.36 | 70.36 | 1662 |
| HSA-MIR-6811-3P | 98.62 | 66.54 | 944 |
| HSA-MIR-3135B | 98.61 | 65.33 | 1470 |
| HSA-MIR-210-5P | 98.57 | 64.37 | 832 |
| HSA-MIR-5008-5P | 98.42 | 65.87 | 1019 |
| HSA-MIR-654-3P | 98.38 | 67.61 | 905 |
| HSA-MIR-2861 | 95.24 | 65.47 | 1056 |
| HSA-MIR-6769A-3P | 94.91 | 61.36 | 412 |
| HSA-MIR-8074 | 90.61 | 65.46 | 165 |
Literature-anchored findings (GeneRIF, showing 4)
- A novel PDZ protein regulates the activity of guanylyl cyclase C, the heat-stable enterotoxin receptor. (PMID:11950846)
- Regulation of NHE3 depends on the nature of the NHERF family member associating with NHE3 and the accompanying NHE3 complexes. (PMID:19088451)
- The NHERF4 is a novel modulator of luminal fluidity in the intestine by adjusting SLC26A3 expression and activity through a phosphorylation-dependent mechanism. (PMID:22627094)
- IKEPP was also found to be expressed in vascular endothelial cells where it co-localizes and complexes with the hIP (PMID:22884631)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | nherf4a | ENSDARG00000040568 |
| danio_rerio | nherf4b | ENSDARG00000055656 |
| mus_musculus | Nherf4 | ENSMUSG00000032105 |
| rattus_norvegicus | Nherf4 | ENSRNOG00000008526 |
| caenorhabditis_elegans | WBGENE00006438 |
Paralogs (3): NHERF2 (ENSG00000065054), NHERF1 (ENSG00000109062), PDZK1 (ENSG00000174827)
Protein
Protein identifiers
Na(+)/H(+) exchange regulatory cofactor NHE-RF4 — Q86UT5 (reviewed: Q86UT5)
Alternative names: Intestinal and kidney-enriched PDZ protein, Natrium-phosphate cotransporter IIa C-terminal-associated protein 2, PDZ domain-containing protein 2, PDZ domain-containing protein 3, Sodium-hydrogen exchanger regulatory factor 4
All UniProt accessions (4): B0YJ61, E9PPZ1, E9PRB0, Q86UT5
UniProt curated annotations — full annotation on UniProt →
Function. Acts as a regulatory protein that associates with GUCY2C and negatively modulates its heat-stable enterotoxin-mediated activation. Stimulates SLC9A3 activity in the presence of elevated calcium ions.
Subunit / interactions. Interacts with the C-terminal region of GUCY2C. Interacts with the C-terminal region SLC9A3 and the interactions decrease in response to elevated calcium ion levels. Interacts with the C-terminal region of SLC34A1. Interacts with USP2 isoform 4. Interacts (via the third PDZ domain) with SLC26A3 (via PDZ-binding motif); interaction leads to decreased expression of SLC26A3 on the cell membrane resulting in its reduced exchanger activity.
Subcellular location. Cell membrane. Cytoplasm.
Tissue specificity. Expressed in kidney and the gastrointestinal tract. Not detected in brain, heart, skeletal muscle or cells of hematopoietic origin.
Post-translational modifications. Phosphorylation at Ser-395 negatively regulates its interaction with SLC26A3.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q86UT5-1 | 1 | yes |
| Q86UT5-2 | 2 | |
| Q86UT5-3 | 3 | |
| Q86UT5-4 | 4 | |
| Q86UT5-5 | 5 |
RefSeq proteins (2): NP_001161940, NP_079067 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001478 | PDZ | Domain |
| IPR036034 | PDZ_sf | Homologous_superfamily |
| IPR051067 | NHER | Family |
Pfam: PF00595
UniProt features (27 total): splice variant 6, strand 5, domain 4, sequence conflict 4, helix 2, region of interest 2, chain 1, turn 1, compositionally biased region 1, modified residue 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2V90 | X-RAY DIFFRACTION | 2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q86UT5-F1 | 69.72 | 0.27 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 395
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-8942233 | Intestinal infectious diseases |
MSigDB gene sets: 105 (showing top):
GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, COUP_01, GOBP_WATER_TRANSPORT, HNF4_DR1_Q3, HNF4_01, PPAR_DR1_Q2, GOCC_APICAL_PLASMA_MEMBRANE, SABATES_COLORECTAL_ADENOMA_DN, GOBP_RESPONSE_TO_TOXIC_SUBSTANCE, GOMF_SIGNALING_RECEPTOR_BINDING, GOCC_CELL_CELL_JUNCTION, GOBP_LOCALIZATION_WITHIN_MEMBRANE, GOBP_FLUID_TRANSPORT, GOCC_APICAL_PART_OF_CELL, GOCC_CLUSTER_OF_ACTIN_BASED_CELL_PROJECTIONS
GO Biological Process (6): monoatomic ion transport (GO:0006811), water transport (GO:0006833), receptor guanylyl cyclase signaling pathway (GO:0007168), response to toxic substance (GO:0009636), negative regulation of receptor guanylyl cyclase signaling pathway (GO:0010754), protein localization to plasma membrane (GO:0072659)
GO Molecular Function (6): signaling receptor binding (GO:0005102), ion channel inhibitor activity (GO:0008200), guanylate cyclase inhibitor activity (GO:0030251), protein-membrane adaptor activity (GO:0043495), ubiquitin-specific protease binding (GO:1990381), protein binding (GO:0005515)
GO Cellular Component (8): cytosol (GO:0005829), plasma membrane (GO:0005886), brush border (GO:0005903), apical plasma membrane (GO:0016324), apical junction complex (GO:0043296), apical part of cell (GO:0045177), cytoplasm (GO:0005737), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Uptake and actions of bacterial toxins | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| apical part of cell | 2 |
| transport | 1 |
| fluid transport | 1 |
| enzyme-linked receptor protein signaling pathway | 1 |
| response to chemical | 1 |
| receptor guanylyl cyclase signaling pathway | 1 |
| negative regulation of signal transduction | 1 |
| protein localization to membrane | 1 |
| protein localization to cell periphery | 1 |
| protein binding | 1 |
| monoatomic ion channel activity | 1 |
| channel inhibitor activity | 1 |
| transmembrane transporter binding | 1 |
| ion channel regulator activity | 1 |
| guanylate cyclase activity | 1 |
| cyclase inhibitor activity | 1 |
| guanylate cyclase regulator activity | 1 |
| protein-macromolecule adaptor activity | 1 |
| protease binding | 1 |
| binding | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| microvillus | 1 |
| cluster of actin-based cell projections | 1 |
| plasma membrane region | 1 |
| cell-cell junction | 1 |
| intracellular anatomical structure | 1 |
Protein interactions and networks
STRING
822 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NHERF4 | GUCY2C | P25092 | 914 |
| NHERF4 | CFTR | P13569 | 832 |
| NHERF4 | SLC34A1 | Q06495 | 737 |
| NHERF4 | NPR3 | P17342 | 730 |
| NHERF4 | SLC22A5 | O76082 | 640 |
| NHERF4 | SLC26A3 | P40879 | 631 |
| NHERF4 | SLC22A4 | Q9H015 | 601 |
| NHERF4 | SHANK2 | Q9UPX8 | 594 |
| NHERF4 | GUCA2B | Q16661 | 568 |
| NHERF4 | GOPC | Q9HD26 | 568 |
| NHERF4 | SPRYD7 | Q5W111 | 565 |
| NHERF4 | SLC9A3 | P48764 | 507 |
| NHERF4 | NHERF1 | O14745 | 477 |
| NHERF4 | PDZK1 | Q5T2W1 | 460 |
| NHERF4 | GUCA2A | Q02747 | 459 |
IntAct
837 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| PRKAG2 | PRKAB2 | psi-mi:“MI:0914”(association) | 0.730 |
| CACNA1S | NHERF4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NHERF4 | SPRYD7 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ASAP3 | NHERF4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NHERF4 | SLC41A3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NHERF4 | CACNA1S | psi-mi:“MI:0915”(physical association) | 0.560 |
| SPRYD7 | NHERF4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NHERF4 | ASAP3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| SLC41A3 | NHERF4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| E6 | NHERF4 | psi-mi:“MI:0915”(physical association) | 0.540 |
| E6 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.540 |
| PTTG2 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| WHRN | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GARIN6 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| CIB2 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SLCO1C1 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| KCNV1 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| SLC15A5 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| PRKN | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NHERF4 | ORF putative E6 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ABCC4 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| GJC1 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| DOCK4 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| WWTR1 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| YAP1 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| ASIC3 | NHERF4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (17): PDZD3 (Two-hybrid), PDZD3 (Two-hybrid), PDZD3 (Two-hybrid), PDZD3 (Two-hybrid), PDZD3 (Reconstituted Complex), PDZD3 (Reconstituted Complex), PDZD3 (Two-hybrid), PDZD3 (Two-hybrid), PDZD3 (Two-hybrid), PDZD3 (Reconstituted Complex), GUCY2C (Reconstituted Complex), PDZD3 (Affinity Capture-Western), PDZD3 (Protein-peptide), PDZD3 (Affinity Capture-MS), PDZD3 (Two-hybrid)
ESM2 similar proteins: A3R064, A7E3N7, D3ZBP4, E9Q6X9, F1MH07, G3V8H4, O70248, O88888, O95382, O96018, P97465, Q0VBL6, Q13470, Q3KR16, Q3MIN7, Q3UYI5, Q3V3V9, Q4QQV2, Q58EX7, Q5EA84, Q5VV41, Q6F5E8, Q6P5Z2, Q6PGG2, Q80XL1, Q86UT5, Q8BWA8, Q8CJ00, Q8IW93, Q8K031, Q8K045, Q8R5F8, Q8TDZ2, Q8TE67, Q8VDP3, Q924T7, Q92502, Q92918, Q969H4, Q99704
Diamond homologs: A0A140LI67, A0A8P0N4K0, A4D2P6, A5PKA5, A8MUH7, B7WN72, D3YZU1, G5ECY0, O08774, O14745, O14910, O14924, O15085, O88951, O88952, P31016, P70175, P70441, P78352, Q0P5F3, Q12923, Q13425, Q14160, Q15599, Q15700, Q28619, Q28C55, Q2KIB6, Q32LM6, Q3SZK8, Q3T0X8, Q3UHD6, Q4ACU6, Q4H4B6, Q4KL35, Q4R6G4, Q52KW0, Q5F425, Q5F488, Q5PYH5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 118 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| TCF dependent signaling in response to WNT | 6 | 8.6× | 9e-03 |
| Neuronal System | 9 | 4.9× | 9e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| bicellular tight junction assembly | 5 | 15.2× | 6e-03 |
| positive regulation of osteoblast differentiation | 5 | 10.3× | 9e-03 |
| negative regulation of canonical Wnt signaling pathway | 7 | 7.6× | 6e-03 |
| chemical synaptic transmission | 9 | 6.4× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
103 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 94 |
| Likely benign | 6 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1972 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:119187697:G:GT | donor_gain | 1.0000 |
| 11:119187698:A:T | donor_gain | 1.0000 |
| 11:119188143:TGG:T | donor_loss | 1.0000 |
| 11:119188144:GGT:G | donor_loss | 1.0000 |
| 11:119188145:GT:G | donor_loss | 1.0000 |
| 11:119188146:T:A | donor_loss | 1.0000 |
| 11:119187427:A:G | donor_gain | 0.9900 |
| 11:119187434:T:TA | donor_gain | 0.9900 |
| 11:119187435:G:GA | donor_gain | 0.9900 |
| 11:119187559:TCTA:T | acceptor_loss | 0.9900 |
| 11:119187560:CTA:C | acceptor_loss | 0.9900 |
| 11:119187561:TA:T | acceptor_loss | 0.9900 |
| 11:119187562:A:AG | acceptor_gain | 0.9900 |
| 11:119187563:G:GG | acceptor_gain | 0.9900 |
| 11:119187696:GGAAG:G | donor_gain | 0.9900 |
| 11:119187697:GAAGG:G | donor_loss | 0.9900 |
| 11:119187698:AAGG:A | donor_loss | 0.9900 |
| 11:119187699:AGGTG:A | donor_loss | 0.9900 |
| 11:119187700:GGTG:G | donor_loss | 0.9900 |
| 11:119187937:CAGCT:C | acceptor_loss | 0.9900 |
| 11:119187938:A:AG | acceptor_gain | 0.9900 |
| 11:119187938:AG:A | acceptor_loss | 0.9900 |
| 11:119187939:G:A | acceptor_loss | 0.9900 |
| 11:119187939:G:GG | acceptor_gain | 0.9900 |
| 11:119187939:GCTTT:G | acceptor_gain | 0.9900 |
| 11:119188145:G:GG | donor_gain | 0.9900 |
| 11:119188147:GA:G | donor_loss | 0.9900 |
| 11:119188547:GCATG:G | donor_gain | 0.9900 |
| 11:119188549:ATGG:A | donor_loss | 0.9900 |
| 11:119188550:TGGTG:T | donor_loss | 0.9900 |
AlphaMissense
3218 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:119186545:T:C | F128S | 0.988 |
| 11:119186644:T:C | I161T | 0.988 |
| 11:119188105:T:C | F341L | 0.987 |
| 11:119188107:C:A | F341L | 0.987 |
| 11:119188107:C:G | F341L | 0.987 |
| 11:119188106:T:C | F341S | 0.986 |
| 11:119186544:T:C | F128L | 0.985 |
| 11:119186546:C:A | F128L | 0.985 |
| 11:119186546:C:G | F128L | 0.985 |
| 11:119188429:G:C | A379P | 0.976 |
| 11:119188484:T:C | I397T | 0.976 |
| 11:119187642:T:A | L266Q | 0.974 |
| 11:119186644:T:G | I161S | 0.973 |
| 11:119188360:T:C | F356L | 0.973 |
| 11:119188362:C:A | F356L | 0.973 |
| 11:119188362:C:G | F356L | 0.973 |
| 11:119188099:T:C | F339L | 0.972 |
| 11:119188101:T:A | F339L | 0.972 |
| 11:119188101:T:G | F339L | 0.972 |
| 11:119186626:T:A | L155H | 0.971 |
| 11:119187609:C:A | A255D | 0.971 |
| 11:119187445:T:C | F235S | 0.967 |
| 11:119186657:C:A | N165K | 0.965 |
| 11:119186657:C:G | N165K | 0.965 |
| 11:119187642:T:G | L266R | 0.965 |
| 11:119188821:T:C | F480S | 0.965 |
| 11:119187654:A:T | N270I | 0.964 |
| 11:119187624:T:A | V260E | 0.963 |
| 11:119188421:G:C | R376P | 0.963 |
| 11:119188406:T:C | M371T | 0.960 |
dbSNP variants (sampled 300 via entrez): RS1000176398 (11:119190517 T>C), RS1000342609 (11:119187199 G>A,C,T), RS1000373732 (11:119186869 T>C), RS1001735789 (11:119187913 T>C), RS1002403169 (11:119186394 C>A), RS1002887014 (11:119186192 T>C), RS1004474376 (11:119186799 C>T), RS1005149239 (11:119189404 A>G), RS1005181599 (11:119189157 C>A), RS1006188030 (11:119187948 G>A), RS1006494936 (11:119184944 A>C), RS1006668192 (11:119189786 T>A,C), RS1007210060 (11:119185402 C>T), RS1007376318 (11:119188572 G>A), RS1007404323 (11:119188317 A>G)
Disease associations
OMIM: gene MIM:607146 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): congenital portosystemic shunt (MONDO:0018811)
Orphanet (1): Congenital portosystemic shunt (Orphanet:480531)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
20 total (human), top 20 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| propionaldehyde | decreases expression | 1 |
| terbufos | decreases methylation | 1 |
| sodium arsenite | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| pentanal | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| abrine | decreases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Aldehydes | decreases expression | 1 |
| Arsenic | affects methylation | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Fonofos | decreases methylation | 1 |
| Parathion | decreases methylation | 1 |
| Plant Extracts | decreases expression, affects cotreatment | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Tetrachlorodibenzodioxin | increases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Palmitic Acid | decreases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
2 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT06041906 | Not specified | ENROLLING_BY_INVITATION | International Registry of Congenital Portosystemic Shunt (IRCPSS) |
| NCT07314814 | Not specified | NOT_YET_RECRUITING | Genetic Hallmarks of Patients With Congenital Portosystemic Shunts and Portopulmonary Hypertension |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): congenital portosystemic shunt