NMT2
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Summary
NMT2 (N-myristoyltransferase 2, HGNC:7858) is a protein-coding gene on chromosome 10p13, encoding Glycylpeptide N-tetradecanoyltransferase 2 (O60551). Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins.
This gene encodes one of two N-myristoyltransferase proteins. N-terminal myristoylation is a lipid modification that is involved in regulating the function and localization of signaling proteins. The encoded protein catalyzes the addition of a myristoyl group to the N-terminal glycine residue of many signaling proteins, including the human immunodeficiency virus type 1 (HIV-1) proteins, Gag and Nef. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 9397 — RefSeq curated summary.
At a glance
- GWAS associations: 4
- Clinical variants (ClinVar): 78 total
- Druggable target: yes
- MANE Select transcript:
NM_004808
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7858 |
| Approved symbol | NMT2 |
| Name | N-myristoyltransferase 2 |
| Location | 10p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Ensembl gene | ENSG00000152465 |
| Ensembl biotype | protein_coding |
| OMIM | 603801 |
| Entrez | 9397 |
Gene structure
Transcript identifiers
Ensembl transcripts: 11 — 8 protein_coding, 3 protein_coding_CDS_not_defined
ENST00000378150, ENST00000378165, ENST00000466201, ENST00000478580, ENST00000486786, ENST00000903368, ENST00000903369, ENST00000903370, ENST00000903371, ENST00000903372, ENST00000954252
RefSeq mRNA: 2 — MANE Select: NM_004808
NM_001308295, NM_004808
CCDS: CCDS7109, CCDS76284
Canonical transcript exons
ENST00000378165 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001614281 | 15119343 | 15119513 |
| ENSE00001733830 | 15128350 | 15128458 |
| ENSE00001794131 | 15130142 | 15130312 |
| ENSE00001812561 | 15105770 | 15109215 |
| ENSE00001901915 | 15168503 | 15168693 |
| ENSE00003466409 | 15141422 | 15141557 |
| ENSE00003514248 | 15135274 | 15135418 |
| ENSE00003520733 | 15133053 | 15133144 |
| ENSE00003536584 | 15132817 | 15132933 |
| ENSE00003552637 | 15112796 | 15112963 |
| ENSE00003600019 | 15109702 | 15109839 |
| ENSE00003674605 | 15133245 | 15133363 |
Expression profiles
Bgee: expression breadth ubiquitous, 278 present calls, max score 94.61.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 20.7132 / max 246.5429, expressed in 1789 samples.
FANTOM5 promoters (4 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 108415 | 11.1370 | 1694 |
| 108414 | 8.8063 | 1701 |
| 108416 | 0.7278 | 447 |
| 108411 | 0.0421 | 20 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| endothelial cell | CL:0000115 | 94.61 | gold quality |
| cortical plate | UBERON:0005343 | 92.19 | gold quality |
| ventricular zone | UBERON:0003053 | 90.65 | gold quality |
| adipose tissue | UBERON:0001013 | 90.36 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 89.80 | gold quality |
| connective tissue | UBERON:0002384 | 89.34 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 89.15 | gold quality |
| cerebellar cortex | UBERON:0002129 | 89.08 | gold quality |
| ganglionic eminence | UBERON:0004023 | 88.77 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 88.53 | gold quality |
| adipose tissue of abdominal region | UBERON:0007808 | 88.14 | gold quality |
| cerebellum | UBERON:0002037 | 87.96 | gold quality |
| tibia | UBERON:0000979 | 87.94 | gold quality |
| omental fat pad | UBERON:0010414 | 87.87 | gold quality |
| peritoneum | UBERON:0002358 | 87.82 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 87.41 | gold quality |
| calcaneal tendon | UBERON:0003701 | 86.35 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.95 | gold quality |
| primary visual cortex | UBERON:0002436 | 85.81 | gold quality |
| right lobe of liver | UBERON:0001114 | 85.79 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 85.39 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 85.25 | gold quality |
| right frontal lobe | UBERON:0002810 | 85.02 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 85.00 | gold quality |
| adrenal tissue | UBERON:0018303 | 84.95 | gold quality |
| prefrontal cortex | UBERON:0000451 | 84.74 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 84.66 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 84.21 | gold quality |
| left ovary | UBERON:0002119 | 84.14 | gold quality |
| right ovary | UBERON:0002118 | 83.98 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 4.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9067 | yes | 13.16 |
| E-ANND-3 | yes | 8.29 |
| E-CURD-112 | yes | 6.35 |
| E-MTAB-9801 | yes | 6.09 |
| E-MTAB-4850 | no | 385.22 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
161 targeting NMT2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-518D-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-518E-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-518F-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-519A-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519B-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-519C-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-520C-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-522-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-523-5P | 100.00 | 67.66 | 954 |
| HSA-MIR-526A-5P | 100.00 | 67.51 | 979 |
| HSA-MIR-4481 | 100.00 | 66.42 | 1669 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-433-3P | 99.98 | 69.37 | 1203 |
| HSA-MIR-19A-3P | 99.98 | 75.33 | 2762 |
| HSA-MIR-19B-3P | 99.98 | 75.44 | 2754 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4745-5P | 99.98 | 65.95 | 1028 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-512-3P | 99.97 | 67.35 | 1049 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
Literature-anchored findings (GeneRIF, showing 8)
- induction of NMT2 may play a central role in dioxin carcinogenicity. (PMID:11731439)
- NMT1 and NMT2 have only partially overlapping functions; NMT1 is critical for tumor cell proliferation (PMID:16123142)
- Involved in progression and regulation of telomerase (PMID:16364039)
- Protein-protein interaction of NMTs revealed that m-calpain interacts with NMT1 while caspase-3 interacts with NMT2. (PMID:16530191)
- Disruption of the gene for NMT2 by a t(8;10) translocation in a male with hypogonadism. (PMID:17568424)
- Nef is preferentially myristoylated by NMT2, suggesting that selective inhibition of NMT2 may provide a novel means of blocking HIV virulence. (PMID:18089753)
- ligand binding properties of the NMT/ACBD6 complex can explain how the NMT reaction can proceed in the presence of the very abundant competitive substrate, C(16)-CoA. (PMID:26621918)
- N-mytistoyltransferase 1 and 2 are potential tumor suppressors and novel targets of miR-182 in human non-small cell lung carcinomas. (PMID:35930829)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | nmt2 | ENSDARG00000021808 |
| mus_musculus | Nmt2 | ENSMUSG00000026643 |
| rattus_norvegicus | Nmt2 | ENSRNOG00000026248 |
| drosophila_melanogaster | Nmt | FBGN0020392 |
| caenorhabditis_elegans | WBGENE00020549 |
Paralogs (1): NMT1 (ENSG00000136448)
Protein
Protein identifiers
Glycylpeptide N-tetradecanoyltransferase 2 — O60551 (reviewed: O60551)
Alternative names: Myristoyl-CoA:protein N-myristoyltransferase 2, Peptide N-myristoyltransferase 2, Protein-lysine myristoyltransferase NMT2, Type II N-myristoyltransferase
All UniProt accessions (2): O60551, Q5VUC6
UniProt curated annotations — full annotation on UniProt →
Function. Adds a myristoyl group to the N-terminal glycine residue of certain cellular and viral proteins. Also able to mediate N-terminal lysine myristoylation of proteins: catalyzes myristoylation of ARF6 on both ‘Gly-2’ and ‘Lys-3’. Lysine myristoylation is required to maintain ARF6 on membranes during the GTPase cycle.
Subcellular location. Cytoplasm. Membrane.
Similarity. Belongs to the NMT family.
RefSeq proteins (2): NP_001295224, NP_004799* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000903 | NMT | Family |
| IPR016181 | Acyl_CoA_acyltransferase | Homologous_superfamily |
| IPR022676 | NMT_N | Domain |
| IPR022677 | NMT_C | Domain |
| IPR022678 | NMT_CS | Conserved_site |
Pfam: PF01233, PF02799
Enzyme classification (BRENDA):
- EC 2.3.1.97 — glycylpeptide N-tetradecanoyltransferase (BRENDA: 25 organisms, 184 substrates, 380 inhibitors, 83 Km, 22 kcat entries)
Substrate kinetics (BRENDA)
36 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| MYRISTOYL-COA | — | 23 |
| CAMP-DEPENDENT PROTEIN KINASE-DERIVED PEPTIDE | 0.1–0.2 | 5 |
| GLY-ASN-ALA-ALA-SER-ALA-ARG-ARG | 0.0001–0.006 | 5 |
| GLY-ASN-ALA-ALA-ALA-ALA-ARG-ARG | 0.016–0.6 | 4 |
| P60SRC-DERIVED PEPTIDE | 0.016–0.06 | 4 |
| CAP5.5 PEPTIDE | 0.012–0.25 | 2 |
| HIV-1 NEGATIVE REGULATORY FACTOR | 0.0144–0.0257 | 2 |
| HIV1 GAG PROTEIN N-TERMINAL PEPTIDE | 0.196–0.33 | 2 |
| HIV1 NEF PROTEIN N-TERMINAL PEPTIDE | 0.0015–0.011 | 2 |
| PEPTIDE HS PP60SRC(2-9) | 0.0028 | 2 |
| 11-(ETHYLTHIO)-UNDECANOYL-COA | 0.0007 | 1 |
| ARABIDOPSIS THALIANA PROTEIN CDPK6-DERIVED PEPTI | 0.0205 | 1 |
| ARF PEPTIDE | 0.0175 | 1 |
| CAP5.5 | 0.022 | 1 |
| GCGGSKVK | 0.0113 | 1 |
Catalyzed reactions (Rhea), 2 shown:
- N-terminal glycyl-[protein] + tetradecanoyl-CoA = N-tetradecanoylglycyl-[protein] + CoA + H(+) (RHEA:15521)
- N-terminal glycyl-L-lysyl-[protein] + tetradecanoyl-CoA = N-terminal glycyl-(N(6)-tetradecanoyl)-L-lysyl-[protein] + CoA + H(+) (RHEA:70671)
UniProt features (54 total): strand 20, helix 15, binding site 8, turn 4, compositionally biased region 3, chain 1, region of interest 1, modified residue 1, sequence conflict 1
Structure
Experimental structures (PDB)
3 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6PAU | X-RAY DIFFRACTION | 1.93 |
| 4C2X | X-RAY DIFFRACTION | 2.33 |
| 9NDP | ELECTRON MICROSCOPY | 2.82 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O60551-F1 | 81.81 | 0.64 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (8): 260; 261; 262; 117; 122; 250; 252; 258
Post-translational modifications (1): 38
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-174490 | Membrane binding and targetting of GAG proteins |
| R-HSA-203615 | eNOS activation |
| R-HSA-2514859 | Inactivation, recovery and regulation of the phototransduction cascade |
MSigDB gene sets: 232 (showing top):
GSE45365_NK_CELL_VS_CD8A_DC_MCMV_INFECTION_DN, HORIUCHI_WTAP_TARGETS_DN, GOBP_LIPOPROTEIN_METABOLIC_PROCESS, GOBP_CELLULAR_RESPONSE_TO_LIGHT_STIMULUS, STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN, MORF_BRCA1, GAUSSMANN_MLL_AF4_FUSION_TARGETS_G_DN, GOBP_PHOTOTRANSDUCTION, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, CHANG_IMMORTALIZED_BY_HPV31_DN, chr10p13, REACTOME_HIV_INFECTION, GOBP_PHOTOTRANSDUCTION_VISIBLE_LIGHT, GOBP_LIPOPROTEIN_BIOSYNTHETIC_PROCESS, DACOSTA_UV_RESPONSE_VIA_ERCC3_COMMON_DN
GO Biological Process (5): N-terminal peptidyl-glycine N-myristoylation (GO:0018008), regulation of opsin-mediated signaling pathway (GO:0022400), protein localization to membrane (GO:0072657), intracellular transport of virus (GO:0075733), N-terminal protein myristoylation (GO:0006499)
GO Molecular Function (5): glycylpeptide N-tetradecanoyltransferase activity (GO:0004379), peptidyl-lysine N6-myristoyltransferase activity (GO:0018030), protein binding (GO:0005515), transferase activity (GO:0016740), acyltransferase activity (GO:0016746)
GO Cellular Component (6): cytoplasm (GO:0005737), Golgi apparatus (GO:0005794), cytosol (GO:0005829), plasma membrane (GO:0005886), host cell (GO:0043657), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Synthesis And Processing Of GAG, GAGPOL Polyproteins | 1 |
| Metabolism of nitric oxide: NOS3 activation and regulation | 1 |
| The phototransduction cascade | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| myristoyltransferase activity | 2 |
| cytoplasm | 2 |
| N-terminal protein myristoylation | 1 |
| peptidyl-glycine modification | 1 |
| regulation of G protein-coupled receptor signaling pathway | 1 |
| G protein-coupled opsin signaling pathway | 1 |
| regulation of response to external stimulus | 1 |
| intracellular protein localization | 1 |
| localization within membrane | 1 |
| viral life cycle | 1 |
| host cell | 1 |
| biological process involved in symbiotic interaction | 1 |
| transport of virus | 1 |
| N-terminal protein lipidation | 1 |
| protein myristoylation | 1 |
| catalytic activity, acting on a protein | 1 |
| binding | 1 |
| catalytic activity | 1 |
| transferase activity | 1 |
| intracellular anatomical structure | 1 |
| endomembrane system | 1 |
| intracellular membrane-bounded organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| host cellular component | 1 |
Protein interactions and networks
STRING
862 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NMT2 | ACBD6 | Q9BR61 | 768 |
| NMT2 | GNAO1 | P09471 | 589 |
| NMT2 | MED6 | O75586 | 546 |
| NMT2 | CCDC106 | Q9BWC9 | 516 |
| NMT2 | CASP3 | P42574 | 457 |
| NMT2 | SAMD15 | Q9P1V8 | 455 |
| NMT2 | METAP2 | P50579 | 431 |
| NMT2 | NVL | O15381 | 423 |
| NMT2 | AKAP13 | Q12802 | 422 |
| NMT2 | METAP1 | P53582 | 419 |
| NMT2 | PPM1A | P35813 | 419 |
| NMT2 | NDN | Q99608 | 418 |
| NMT2 | MST1R | Q04912 | 408 |
| NMT2 | DBI | P07108 | 408 |
| NMT2 | TP53 | P04637 | 402 |
IntAct
132 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ACBD6 | NMT2 | psi-mi:“MI:0914”(association) | 0.870 |
| ACBD6 | NMT2 | psi-mi:“MI:0915”(physical association) | 0.870 |
| NMT2 | ACBD6 | psi-mi:“MI:0915”(physical association) | 0.870 |
| NMT2 | ACBD6 | psi-mi:“MI:0407”(direct interaction) | 0.870 |
| ACBD6 | NMT2 | psi-mi:“MI:0214”(myristoylation reaction) | 0.870 |
| ACBD6 | NMT2 | psi-mi:“MI:0211”(lipid addition) | 0.870 |
| PRPS1 | PRPSAP2 | psi-mi:“MI:0914”(association) | 0.840 |
| PRPS2 | PRPSAP2 | psi-mi:“MI:0914”(association) | 0.670 |
| CSNK2B | NMT2 | psi-mi:“MI:0914”(association) | 0.660 |
| NMT2 | CSNK2B | psi-mi:“MI:0915”(physical association) | 0.660 |
| LRATD2 | NMT2 | psi-mi:“MI:0915”(physical association) | 0.640 |
| PRPS1 | NMT2 | psi-mi:“MI:0914”(association) | 0.640 |
| LRATD2 | NMT2 | psi-mi:“MI:0914”(association) | 0.640 |
| NMT2 | psi-mi:“MI:0407”(direct interaction) | 0.620 | |
| NMT2 | psi-mi:“MI:0214”(myristoylation reaction) | 0.620 | |
| NMT2 | psi-mi:“MI:0211”(lipid addition) | 0.620 | |
| CASP3 | NMT2 | psi-mi:“MI:0570”(protein cleavage) | 0.610 |
| NMT2 | CASP3 | psi-mi:“MI:0915”(physical association) | 0.610 |
| NMT2 | psi-mi:“MI:0214”(myristoylation reaction) | 0.560 | |
| NMT2 | psi-mi:“MI:0407”(direct interaction) | 0.560 |
BioGRID (100): TP53 (Affinity Capture-Western), BCL2 (Affinity Capture-Western), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS), NMT2 (Affinity Capture-MS)
ESM2 similar proteins: A2VE39, D2HRF1, O02697, O60551, P26446, P42338, P48736, P60670, Q1MTD3, Q28E61, Q28FT4, Q295E6, Q2T9V5, Q4KLT3, Q4R6F3, Q5R981, Q5U2U7, Q5U2Z5, Q5XI55, Q5ZJM3, Q69ZX6, Q6GQ76, Q6P3K3, Q6PCN7, Q803R5, Q80VJ4, Q8BTI9, Q8BYH3, Q8CE96, Q8K1Q0, Q8K224, Q8K4M9, Q8N1G2, Q8R3N6, Q8TAT6, Q91XL9, Q95216, Q96IV0, Q9BXW6, Q9D0L8
Diamond homologs: A7YT82, O43010, O60551, O61613, O70310, O70311, O74234, P0CP20, P0CP21, P14743, P30418, P30419, P31717, P34763, P34809, P46548, Q4I061, Q4PB56, Q553B6, Q5RAF3, Q6BJF4, Q6C7G2, Q6CMK4, Q75EK2, Q7S3C8, Q8ILW6, Q8K1Q0, Q8TFN1, Q94L32, Q9LTR9, Q9N181, Q9U419, Q9UVX3, Q9EMI7
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 87 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| ESR-mediated signaling | 5 | 12.3× | 4e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| double-strand break repair | 5 | 13.5× | 6e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
78 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 57 |
| Likely benign | 1 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2429 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:15103288:ATTTT:A | acceptor_gain | 1.0000 |
| 10:15103292:T:A | acceptor_gain | 1.0000 |
| 10:15109697:CTTA:C | donor_loss | 1.0000 |
| 10:15109698:TTA:T | donor_loss | 1.0000 |
| 10:15109700:A:AC | donor_gain | 1.0000 |
| 10:15109701:C:CC | donor_gain | 1.0000 |
| 10:15109701:C:CT | donor_loss | 1.0000 |
| 10:15109836:CTTT:C | acceptor_gain | 1.0000 |
| 10:15109838:TT:T | acceptor_gain | 1.0000 |
| 10:15109840:C:CC | acceptor_gain | 1.0000 |
| 10:15109840:C:T | acceptor_loss | 1.0000 |
| 10:15109844:C:CT | acceptor_gain | 1.0000 |
| 10:15109844:C:T | acceptor_gain | 1.0000 |
| 10:15109845:A:T | acceptor_gain | 1.0000 |
| 10:15109846:A:AC | acceptor_gain | 1.0000 |
| 10:15109846:A:C | acceptor_gain | 1.0000 |
| 10:15109847:T:C | acceptor_gain | 1.0000 |
| 10:15109847:T:TC | acceptor_gain | 1.0000 |
| 10:15109848:T:C | acceptor_gain | 1.0000 |
| 10:15109848:T:TC | acceptor_gain | 1.0000 |
| 10:15112645:T:C | donor_gain | 1.0000 |
| 10:15112790:GCTTA:G | donor_loss | 1.0000 |
| 10:15112791:CTTAC:C | donor_loss | 1.0000 |
| 10:15112792:TTA:T | donor_loss | 1.0000 |
| 10:15112793:TACCG:T | donor_loss | 1.0000 |
| 10:15112794:A:AC | donor_gain | 1.0000 |
| 10:15112794:A:T | donor_loss | 1.0000 |
| 10:15112794:AC:A | donor_gain | 1.0000 |
| 10:15112795:C:CA | donor_gain | 1.0000 |
| 10:15112795:CC:C | donor_gain | 1.0000 |
AlphaMissense
3289 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:15109731:A:G | W483R | 1.000 |
| 10:15109731:A:T | W483R | 1.000 |
| 10:15109751:A:C | L476W | 1.000 |
| 10:15109751:A:G | L476S | 1.000 |
| 10:15109757:C:T | G474D | 1.000 |
| 10:15109763:C:T | G472E | 1.000 |
| 10:15109764:C:G | G472R | 1.000 |
| 10:15109764:C:T | G472R | 1.000 |
| 10:15109771:A:C | F469L | 1.000 |
| 10:15109771:A:T | F469L | 1.000 |
| 10:15109772:A:G | F469S | 1.000 |
| 10:15109773:A:G | F469L | 1.000 |
| 10:15109773:A:T | F469I | 1.000 |
| 10:15109818:C:G | A454P | 1.000 |
| 10:15109819:A:C | N453K | 1.000 |
| 10:15109819:A:T | N453K | 1.000 |
| 10:15109821:T:C | N453D | 1.000 |
| 10:15109826:A:T | V451E | 1.000 |
| 10:15112803:G:T | A444D | 1.000 |
| 10:15112870:A:G | Y422H | 1.000 |
| 10:15112872:G:T | A421D | 1.000 |
| 10:15112875:G:T | A420D | 1.000 |
| 10:15112931:G:C | S401R | 1.000 |
| 10:15112931:G:T | S401R | 1.000 |
| 10:15112933:T:G | S401R | 1.000 |
| 10:15128410:A:C | F313L | 1.000 |
| 10:15128410:A:T | F313L | 1.000 |
| 10:15128411:A:C | F313C | 1.000 |
| 10:15128411:A:G | F313S | 1.000 |
| 10:15128412:A:C | F313V | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000071187 (10:15122036 T>A,C), RS1000072753 (10:15149051 C>T), RS1000099667 (10:15106909 C>T), RS1000120230 (10:15161800 T>A,C), RS1000122961 (10:15159935 C>T), RS1000149096 (10:15114613 T>C,G), RS1000203375 (10:15114915 T>A,C), RS1000231531 (10:15121141 T>A), RS1000250097 (10:15142743 G>C), RS1000324792 (10:15144547 T>A,C), RS1000327034 (10:15116225 G>A), RS1000373473 (10:15144254 C>A,T), RS1000406412 (10:15126814 G>A), RS1000482430 (10:15113210 C>G), RS1000619707 (10:15138427 C>T)
Disease associations
OMIM: gene MIM:603801 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002595_16 | Clozapine-induced agranulocytosis | 5.000000e-06 |
| GCST008359_6 | Response to cognitive-behavioural therapy in anxiety disorder | 4.000000e-06 |
| GCST008394_5 | Mild to moderate chronic kidney disease | 4.000000e-08 |
| GCST009892_1 | Osteoporosis-related phenotypes (MTAG) | 1.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007820 | cognitive behavioural therapy |
| EFO:0007702 | hip bone mineral density |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2096973 (PROTEIN FAMILY), CHEMBL2849 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — N-myristoyltransferases
ChEMBL bioactivities
118 potent at pChembl≥5 of 176 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.41 | IC50 | 0.39 | nM | CHEMBL170807 |
| 9.40 | IC50 | 0.4 | nM | CHEMBL173370 |
| 9.24 | IC50 | 0.58 | nM | CHEMBL171506 |
| 9.15 | IC50 | 0.71 | nM | CHEMBL170524 |
| 8.89 | IC50 | 1.3 | nM | CHEMBL422896 |
| 8.89 | IC50 | 1.3 | nM | CHEMBL355497 |
| 8.70 | IC50 | 2 | nM | CHEMBL422746 |
| 8.52 | IC50 | 3 | nM | CHEMBL1230468 |
| 8.46 | IC50 | 3.5 | nM | CHEMBL355250 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL158172 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL155301 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL347895 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL155469 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL345893 |
| 8.43 | IC50 | 3.7 | nM | CHEMBL347048 |
| 8.28 | IC50 | 5.2 | nM | CHEMBL158172 |
| 8.25 | IC50 | 5.6 | nM | CHEMBL347048 |
| 8.24 | IC50 | 5.7 | nM | CHEMBL347048 |
| 8.12 | IC50 | 7.5 | nM | CHEMBL345893 |
| 8.08 | IC50 | 8.3 | nM | CHEMBL347895 |
| 8.03 | IC50 | 9.4 | nM | CHEMBL155469 |
| 7.77 | IC50 | 17 | nM | CHEMBL351774 |
| 7.70 | IC50 | 20 | nM | CHEMBL291791 |
| 7.55 | IC50 | 28 | nM | CHEMBL158185 |
| 7.40 | IC50 | 40 | nM | CHEMBL188653 |
| 7.38 | IC50 | 42 | nM | CHEMBL59835 |
| 7.37 | IC50 | 43 | nM | CHEMBL353541 |
| 7.33 | IC50 | 47 | nM | CHEMBL172471 |
| 7.25 | IC50 | 56 | nM | SC-58272 |
| 7.22 | Ki | 60 | nM | CHEMBL33664 |
| 7.21 | IC50 | 62 | nM | CHEMBL353249 |
| 7.16 | Ki | 70 | nM | CHEMBL33289 |
| 7.14 | IC50 | 73 | nM | CHEMBL433886 |
| 7.14 | IC50 | 72 | nM | CHEMBL346363 |
| 7.09 | IC50 | 81 | nM | CHEMBL89727 |
| 7.04 | IC50 | 91 | nM | CHEMBL173962 |
| 7.00 | IC50 | 100 | nM | CHEMBL301315 |
| 7.00 | Ki | 100 | nM | CHEMBL4172452 |
| 7.00 | Ki | 100 | nM | CHEMBL4176755 |
| 6.96 | IC50 | 110 | nM | CHEMBL33289 |
| 6.96 | IC50 | 110 | nM | CHEMBL154079 |
| 6.89 | IC50 | 130 | nM | CHEMBL291811 |
| 6.83 | IC50 | 147 | nM | CHEMBL88093 |
| 6.70 | IC50 | 200 | nM | CHEMBL89452 |
| 6.64 | IC50 | 230 | nM | CHEMBL34801 |
| 6.58 | IC50 | 260 | nM | CHEMBL279641 |
| 6.52 | IC50 | 300 | nM | CHEMBL54883 |
| 6.51 | IC50 | 310 | nM | CHEMBL62081 |
| 6.51 | IC50 | 310 | nM | CHEMBL294596 |
| 6.47 | IC50 | 340 | nM | CHEMBL341147 |
PubChem BioAssay actives
109 with measured affinity, of 256 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| (5-methyl-2-pyridinyl)-[3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]methanone | 143932: In vitro inhibitory activity against candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0004 | uM |
| (1-methylbenzimidazol-2-yl)-[3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0004 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-(1-prop-2-enylbenzimidazol-2-yl)methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0006 | uM |
| (4,5-dimethyl-1,3-thiazol-2-yl)-[3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0007 | uM |
| (1-methylimidazol-2-yl)-[3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0013 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-(1-propan-2-ylbenzimidazol-2-yl)methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0013 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-(4-methyl-1,3-thiazol-2-yl)methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0020 | uM |
| 2,6-dichloro-4-(2-piperazin-1-yl-4-pyridinyl)-N-(1,3,5-trimethylpyrazol-4-yl)benzenesulfonamide | 1171508: Inhibition of human N-myristoyltransferase 2 assessed as transfer of [3H]-myristic acid to a biotinylated substrate peptide (GCGGSKVKPQPPQAK(biotin)-amide by scintillation proximity assay | ic50 | 0.0030 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-pyridin-2-ylmethanone | 143923: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0035 | uM |
| 3-[[2-[(2-fluorophenoxy)methyl]-3-methyl-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143884: Inhibitory activity against Candida albicans (Nmt) assessed as inhibitory concentration | ic50 | 0.0037 | uM |
| 3-[[2-[(4-fluorophenoxy)methyl]-3-methyl-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143885: Inhibitory activity against Candida albicans (Nmt) assessed as inhibitory concentration (nM) | ic50 | 0.0037 | uM |
| 3-[[2-[(2,3-difluorophenoxy)methyl]-3-methyl-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143885: Inhibitory activity against Candida albicans (Nmt) assessed as inhibitory concentration (nM) | ic50 | 0.0037 | uM |
| 3-[[2-[(2,4-difluorophenoxy)methyl]-3-methyl-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143885: Inhibitory activity against Candida albicans (Nmt) assessed as inhibitory concentration (nM) | ic50 | 0.0037 | uM |
| 3-[[3-methyl-2-[(2,3,4-trifluorophenoxy)methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143886: Inhibitory activity against Candida albicans (Nmt) assessed as inhibitory concentration (nM); 3.7-9.4 nM | ic50 | 0.0037 | uM |
| 4-[[3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]methoxy]benzonitrile | 143889: Inhibitory activity against Candida albicans N-Myristoyltransferase (Nmt) | ic50 | 0.0037 | uM |
| 2-[[3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]methoxy]benzonitrile | 143887: Inhibitory activity against Candida albicans N-Myristoyltransferase (CaNmt) assessed as inhibitory concentration using substrate peptide and myristotyl-CoA at 0.5 uM | ic50 | 0.0170 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[[(2R)-2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]propanoyl]amino]propanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.0200 | uM |
| 3-[[2-[(4-bromo-2-fluorophenoxy)methyl]-3-methyl-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143887: Inhibitory activity against Candida albicans N-Myristoyltransferase (CaNmt) assessed as inhibitory concentration using substrate peptide and myristotyl-CoA at 0.5 uM | ic50 | 0.0280 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]propanoylamino]propanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.0400 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]butanoylamino]propanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.0420 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-[3-(trifluoromethyl)-2-pyridinyl]methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0430 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-pyridin-2-ylmethanol | 143935: Inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0470 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[[2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]acetyl]amino]propanoyl]amino]hexanamide | 143934: Inhibitory activity against Candida albicans N-Myristoyltransferase (NMT). | ic50 | 0.0560 | uM |
| (2S)-6-amino-2-[[(2S)-2-[[2-[4-(6-aminohexyl)phenyl]acetyl]amino]-3-hydroxypropanoyl]amino]-N-(2-cyclohexylethyl)hexanamide | 143942: The binding affinity was evaluated towards N-myristoyltransferase (NMT) in the presence of the peptide substrate GNAASARR-NH2 | ki | 0.0600 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-pyridin-3-ylmethanone | 143935: Inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0620 | uM |
| 11-amino-N-[(2S)-1-[[(2S)-6-amino-1-(2-cyclohexylethylamino)-1-oxohexan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]undecanamide | 143942: The binding affinity was evaluated towards N-myristoyltransferase (NMT) in the presence of the peptide substrate GNAASARR-NH2 | ki | 0.0700 | uM |
| 3-[[3-methyl-2-(phenoxymethyl)-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143887: Inhibitory activity against Candida albicans N-Myristoyltransferase (CaNmt) assessed as inhibitory concentration using substrate peptide and myristotyl-CoA at 0.5 uM | ic50 | 0.0720 | uM |
| 3-[[2-[(4-chlorophenoxy)methyl]-3-methyl-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143887: Inhibitory activity against Candida albicans N-Myristoyltransferase (CaNmt) assessed as inhibitory concentration using substrate peptide and myristotyl-CoA at 0.5 uM | ic50 | 0.0730 | uM |
| (2R)-2-[[(2S)-6-amino-2-[[(2S)-3-hydroxy-2-[[2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]acetyl]amino]propanoyl]amino]hexanoyl]amino]-3-methoxy-3-oxopropanoic acid | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.0810 | uM |
| [3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-yl]-(1,3-thiazol-2-yl)methanone | 143930: In vitro inhibitory activity against Candida albicans Nmt (CaNmt) using substrate peptide GLTISKLFR-R-NH2 (0.5 uM) and myristoyl-CoA (0.5 uM) | ic50 | 0.0910 | uM |
| ethyl 4-ethylsulfanyl-6-[(6-piperazin-1-yl-3-pyridinyl)methoxy]quinoline-3-carboxylate | 1506566: Inhibition of N-terminal deletion human NMT2 expressed in Escherichia coli BL21 (DE3) using Hs pp60src (2 to 9 residues) as substrate measured every min for 30 mins by CPM-based fluorescence assay | ki | 0.1000 | uM |
| ethyl 6-[[6-(3-aminopropylamino)-3-pyridinyl]methoxy]-4-ethylsulfanylquinoline-3-carboxylate | 1506566: Inhibition of N-terminal deletion human NMT2 expressed in Escherichia coli BL21 (DE3) using Hs pp60src (2 to 9 residues) as substrate measured every min for 30 mins by CPM-based fluorescence assay | ki | 0.1000 | uM |
| ethyl 3-methyl-4-[3-(pyridin-3-ylmethylamino)propoxy]-1-benzofuran-2-carboxylate | 143887: Inhibitory activity against Candida albicans N-Myristoyltransferase (CaNmt) assessed as inhibitory concentration using substrate peptide and myristotyl-CoA at 0.5 uM | ic50 | 0.1000 | uM |
| 3-[[2-[(3-fluorophenoxy)methyl]-3-methyl-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143887: Inhibitory activity against Candida albicans N-Myristoyltransferase (CaNmt) assessed as inhibitory concentration using substrate peptide and myristotyl-CoA at 0.5 uM | ic50 | 0.1100 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]pentanoylamino]propanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.1300 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-2-[[2-[4-[4-(2-ethylimidazol-1-yl)butyl]phenyl]acetyl]amino]-3-hydroxypropanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.1470 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[[2-[4-[4-(2-propan-2-ylimidazol-1-yl)butyl]phenyl]acetyl]amino]propanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.2000 | uM |
| 11-amino-N-[(2S)-1-[[(2S)-6-amino-1-[[(2S)-1-amino-4-methyl-1-oxopentan-2-yl]amino]-1-oxohexan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]undecanamide | 144065: Inhibitory activity against human N-Myristoyltransferase (NMT). | ic50 | 0.2300 | uM |
| 11-amino-N-[(2S)-1-[[(2S)-6-amino-1-(2-cyclooctylethylamino)-1-oxohexan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]undecanamide | 143934: Inhibitory activity against Candida albicans N-Myristoyltransferase (NMT). | ic50 | 0.3000 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[[2-[4-(4-imidazol-1-ylbutyl)phenyl]acetyl]amino]propanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.3100 | uM |
| (2S)-6-amino-N-(2-cyclohexylethyl)-2-[[(2S)-3-hydroxy-2-[[(2S)-2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]propanoyl]amino]propanoyl]amino]hexanamide | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.3100 | uM |
| ethyl 4-ethylsulfanyl-6-[[6-[[(3R)-pyrrolidin-3-yl]amino]-3-pyridinyl]methoxy]quinoline-3-carboxylate | 1506566: Inhibition of N-terminal deletion human NMT2 expressed in Escherichia coli BL21 (DE3) using Hs pp60src (2 to 9 residues) as substrate measured every min for 30 mins by CPM-based fluorescence assay | ki | 0.3700 | uM |
| (2S)-2-[[(2S)-6-amino-2-[[(2S)-3-hydroxy-2-[2-[4-[4-(2-methylimidazol-1-yl)butyl]phenyl]propanoylamino]propanoyl]amino]hexanoyl]amino]-3-cyclohexylpropanoic acid | 143938: Inhibition activity against N-myristoyltransferase (NMT) of candida albicans. | ic50 | 0.3800 | uM |
| ethyl 6-[[6-(2-aminoethylamino)-3-pyridinyl]methoxy]-4-ethylsulfanylquinoline-3-carboxylate | 1506566: Inhibition of N-terminal deletion human NMT2 expressed in Escherichia coli BL21 (DE3) using Hs pp60src (2 to 9 residues) as substrate measured every min for 30 mins by CPM-based fluorescence assay | ki | 0.4100 | uM |
| 11-amino-N-[(2S)-1-[[(2S)-6-amino-1-(3-methylbutylamino)-1-oxohexan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]undecanamide | 144064: Inhibition of human N-myristoyltransferase (NMT) | ic50 | 0.4200 | uM |
| (4-ethylsulfanyl-6-phenylmethoxyquinolin-3-yl)-morpholin-4-ylmethanone | 1506566: Inhibition of N-terminal deletion human NMT2 expressed in Escherichia coli BL21 (DE3) using Hs pp60src (2 to 9 residues) as substrate measured every min for 30 mins by CPM-based fluorescence assay | ki | 0.5900 | uM |
| 3-[[3-methyl-2-(phenylsulfanylmethyl)-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine | 143887: Inhibitory activity against Candida albicans N-Myristoyltransferase (CaNmt) assessed as inhibitory concentration using substrate peptide and myristotyl-CoA at 0.5 uM | ic50 | 0.6200 | uM |
| ethyl 4-ethylsulfanyl-6-[[6-(piperidin-4-ylamino)-3-pyridinyl]methoxy]quinoline-3-carboxylate | 1506566: Inhibition of N-terminal deletion human NMT2 expressed in Escherichia coli BL21 (DE3) using Hs pp60src (2 to 9 residues) as substrate measured every min for 30 mins by CPM-based fluorescence assay | ki | 0.6900 | uM |
| N-[(2S)-1-[[(2S)-6-amino-1-(2-cyclohexylethylamino)-1-oxohexan-2-yl]amino]-3-hydroxy-1-oxopropan-2-yl]-7-[4-(aminomethyl)phenyl]hept-6-ynamide | 144064: Inhibition of human N-myristoyltransferase (NMT) | ic50 | 0.7600 | uM |
| (2S)-6-amino-2-[[(2S)-2-[2-[4-(6-aminohexyl)phenyl]propanoylamino]-3-hydroxypropanoyl]amino]-N-(2-cyclohexylethyl)hexanamide | 144064: Inhibition of human N-myristoyltransferase (NMT) | ic50 | 0.7900 | uM |
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 2 |
| Arsenic | decreases expression, increases abundance, affects methylation, affects cotreatment | 2 |
| Quercetin | decreases expression, decreases phosphorylation | 2 |
| Silicon Dioxide | increases expression | 2 |
| Valproic Acid | decreases methylation, increases expression | 2 |
| Cyclosporine | decreases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| 2,5,2’,5’-tetrachlorobiphenyl | decreases expression | 1 |
| trichostatin A | increases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| manganese chloride | decreases expression, increases abundance, affects cotreatment | 1 |
| potassium chromate(VI) | decreases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| nickel sulfate | decreases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, increases expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| bisphenol B | increases expression | 1 |
| (+)-JQ1 compound | increases expression | 1 |
| Arsenic Trioxide | increases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Air Pollutants | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | increases methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Coumestrol | affects cotreatment, decreases expression | 1 |
| Doxorubicin | affects response to substance | 1 |
| Etoposide | affects response to substance | 1 |
ChEMBL screening assays
48 unique, capped per target: 48 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL744115 | Binding | Tested for Inhibitory concentration against human N-myristoyltransferase (NMT) in radiochemical HPLC end point assay with peptide GNAASARR-NH2 and [3H]myristoyl-CoA radioligand at 1 uM | Replacements for lysine in l-seryl-l-lysyl dipeptide amide inhibitors of candida albicans myristoyl-CoA:protein N-myristoyltransferase — Bioorg Med Chem Lett |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1P9 | Abcam K-562 NMT2 KO | Cancer cell line | Female |
| CVCL_D2KV | Abcam Raji NMT2 KO | Cancer cell line | Male |
| CVCL_TA84 | HAP1 NMT2 (-) | Cancer cell line | Male |
| CVCL_WQ12 | Abcam Jurkat NMT2 KO | Cancer cell line | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.