NOBOX
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Also known as OG2Og2x
Summary
NOBOX (NOBOX oogenesis homeobox, HGNC:22448) is a protein-coding gene on chromosome 7q35, encoding Homeobox protein NOBOX (O60393). Transcription factor which may play a role in oogenesis.
This homeobox gene encodes a transcription factor that is thought to play a role in oogenesis. In mice, it is essential for folliculogenesis and regulation of oocyte-specific genes. Defects in this gene result in premature ovarian failure type 5.
Source: NCBI Gene 135935 — RefSeq curated summary.
At a glance
- Gene–disease (curated): premature ovarian failure 5 (Strong, GenCC)
- GWAS associations: 6
- Clinical variants (ClinVar): 218 total — 10 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 7
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:22448 |
| Approved symbol | NOBOX |
| Name | NOBOX oogenesis homeobox |
| Location | 7q35 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | OG2, Og2x |
| Ensembl gene | ENSG00000106410 |
| Ensembl biotype | protein_coding |
| OMIM | 610934 |
| Entrez | 135935 |
Gene structure
Transcript identifiers
Ensembl transcripts: 3 — 3 protein_coding
ENST00000467773, ENST00000643164, ENST00000645489
RefSeq mRNA: 1 — MANE Select: None
NM_001080413
CCDS: CCDS47736
Canonical transcript exons
ENST00000467773 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000729273 | 144399397 | 144399482 |
| ENSE00000729276 | 144399757 | 144399863 |
| ENSE00000729280 | 144401046 | 144401597 |
| ENSE00001505566 | 144400110 | 144400312 |
| ENSE00001550402 | 144401869 | 144401950 |
| ENSE00001554893 | 144404556 | 144404680 |
| ENSE00001557808 | 144410143 | 144410227 |
| ENSE00001681449 | 144398282 | 144398586 |
| ENSE00001702350 | 144398950 | 144399178 |
| ENSE00003642859 | 144397240 | 144397541 |
Expression profiles
Bgee: expression breadth tissue_specific, 8 present calls, max score 69.06.
Top tissues by expression
128 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 69.06 | gold quality |
| colonic epithelium | UBERON:0000397 | 37.20 | gold quality |
| granulocyte | CL:0000094 | 36.79 | gold quality |
| right testis | UBERON:0004534 | 36.50 | gold quality |
| ventricular zone | UBERON:0003053 | 36.48 | gold quality |
| cortical plate | UBERON:0005343 | 36.47 | gold quality |
| bone marrow cell | CL:0002092 | 36.16 | gold quality |
| apex of heart | UBERON:0002098 | 35.54 | gold quality |
| ganglionic eminence | UBERON:0004023 | 35.49 | gold quality |
| testis | UBERON:0000473 | 35.14 | gold quality |
| left testis | UBERON:0004533 | 33.85 | silver quality |
| skeletal muscle tissue | UBERON:0001134 | 33.38 | gold quality |
| bone marrow | UBERON:0002371 | 32.88 | gold quality |
| muscle tissue | UBERON:0002385 | 32.17 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 32.15 | gold quality |
| leukocyte | CL:0000738 | 30.30 | gold quality |
| prefrontal cortex | UBERON:0000451 | 30.22 | gold quality |
| monocyte | CL:0000576 | 29.95 | gold quality |
| stromal cell of endometrium | CL:0002255 | 29.87 | gold quality |
| vermiform appendix | UBERON:0001154 | 29.34 | gold quality |
| liver | UBERON:0002107 | 28.57 | gold quality |
| duodenum | UBERON:0002114 | 28.14 | gold quality |
| lymph node | UBERON:0000029 | 27.57 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 27.46 | gold quality |
| tonsil | UBERON:0002372 | 27.05 | gold quality |
| cortex of kidney | UBERON:0001225 | 27.02 | gold quality |
| islet of Langerhans | UBERON:0000006 | 26.97 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 26.82 | gold quality |
| blood | UBERON:0000178 | 26.78 | gold quality |
| kidney | UBERON:0002113 | 26.23 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 0.16 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
3 targets.
| Target | Regulation |
|---|---|
| BGLAP | |
| GDF9 | |
| POU5F1 | Unknown |
Upstream regulators (CollecTRI, top): CEBPD, CEBPG, RUNX2
Literature-anchored findings (GeneRIF, showing 14)
- Mutations of the homeobox region of the NOBOX gene are uncommon in Japanese patients with premature ovarian failure. (PMID:15950662)
- NOBOX expression within adult human tissues is limited to the testis, pancreas and oocyte specific in ovary. (PMID:16597639)
- These findings demonstrate that NOBOX mutations can cause premature ovarian failure. (PMID:17701902)
- Mutations in the homeobox domain of NOBOX are not common explanations for POF in Chinese women. (PMID:18930203)
- The very high 6.2% prevalence of these new mutations in POI patients suggest considering NOBOX as the first autosomal candidate gene involved in this syndrome. (PMID:21837770)
- both NOBOX and FOXL2 are expressed in human follicle granulosa cells and their interaction plays an inhibitory role in the transcriptional response of these promoters. (PMID:24620032)
- High prevalence of the association between the NOBOX rare variants and Primary ovarian insufficiency. (PMID:25514101)
- Screening of NOBOX gene indicted three missense mutations (p.Arg117Trp; p.Gly91Trp and p.Pro619Leu) in eight patients with primary ovarian insufficiency. (PMID:26848058)
- we report the identification of two novel and two recurrent heterozygous NOBOX variants in 7 out of 107 patients, with a prevalence of 6.5% (upper 95% confidence limit of 11.17%). Several variants conserve the ability to interact with FOXL2 in intracellular aggregates (PMID:27798098)
- One novel homozygous truncating variant, chr7:144098161delC, in the NOBOX gene was found in a primary ovarian insufficiency patient. The truncating variant showed a severe defect in transcriptional activation of GDF9 a well-known target of NOBOX. Many oocyte-related genes were expressed at lower level in truncating variant cells than in control cells. We found the truncated NOBOX lost its ability to induced G2/M arrest. (PMID:27836978)
- RSPO2 is a novel target gene of the NOBOX key transcription factor, confirming its important role during the follicular growth in ovary. However, RSPO2 mutations are rare or uncommon in women with primary ovarian insufficiency. (PMID:28743298)
- We report the first familial case of a novel homozygous NOBOX variant with an autosomal recessive mode of inheritance, thus allowing for a genetic diagnosis of primary ovarian failure (PMID:29067606)
- Compound heterozygous null mutations of NOBOX in sisters with delayed puberty and primary amenorrhea. (PMID:34480423)
- NOBOX gene variants in premature ovarian insufficiency: ethnicity-dependent insights. (PMID:37921973)
Cross-species orthologs
2 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Nobox | ENSMUSG00000029736 |
| rattus_norvegicus | Nobox | ENSRNOG00000025720 |
Paralogs (50): ARX (ENSG00000004848), PAX6 (ENSG00000007372), PAX7 (ENSG00000009709), ALX4 (ENSG00000052850), GSC2 (ENSG00000063515), PITX1 (ENSG00000069011), PAX2 (ENSG00000075891), RHOXF1 (ENSG00000101883), CRX (ENSG00000105392), EVX1 (ENSG00000106038), PAX4 (ENSG00000106331), PITX3 (ENSG00000107859), PHOX2B (ENSG00000109132), OTX1 (ENSG00000115507), PRRX1 (ENSG00000116132), VSX2 (ENSG00000119614), ESX1 (ENSG00000123576), PAX8 (ENSG00000125618), PAX1 (ENSG00000125813), RHOXF2 (ENSG00000131721), GSC (ENSG00000133937), RAX (ENSG00000134438), PAX3 (ENSG00000135903), ALX3 (ENSG00000156150), HESX1 (ENSG00000163666), PITX2 (ENSG00000164093), UNCX (ENSG00000164853), PHOX2A (ENSG00000165462), OTX2 (ENSG00000165588), DRGX (ENSG00000165606), PRRX2 (ENSG00000167157), SHOX2 (ENSG00000168779), OTP (ENSG00000171540), RAX2 (ENSG00000173976), EVX2 (ENSG00000174279), PROP1 (ENSG00000175325), ISX (ENSG00000175329), ALX1 (ENSG00000180318), MIXL1 (ENSG00000185155), SHOX (ENSG00000185960)
Protein
Protein identifiers
Homeobox protein NOBOX — O60393 (reviewed: O60393)
All UniProt accessions (3): O60393, A0A2R8Y683, A0A2R8Y8C8
UniProt curated annotations — full annotation on UniProt →
Function. Transcription factor which may play a role in oogenesis. Binds preferentially to the DNA sequences 5’-TAATTG-3’, 5’-TAGTTG-3’ and 5’-TAATTA-3'.
Subcellular location. Nucleus.
Tissue specificity. Expressed in ovaries, testes and pancreas. Expressed within all stages of the adult female germline, from primordial follicles through to MII oocytes.
Disease relevance. Premature ovarian failure 5 (POF5) [MIM:611548] An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O60393-1 | 1 | yes |
| O60393-2 | 2 |
RefSeq proteins (1): NP_001073882 (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001356 | HD | Domain |
| IPR009057 | Homeodomain-like_sf | Homologous_superfamily |
| IPR042988 | NOBOX | Family |
Pfam: PF00046
UniProt features (27 total): sequence variant 15, compositionally biased region 5, region of interest 4, chain 1, DNA-binding region 1, splice variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O60393-F1 | 48.12 | 0.03 |
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-9820841 | M-decay: degradation of maternal mRNAs by maternally stored factors |
MSigDB gene sets: 53 (showing top):
GOBP_OOGENESIS, GOBP_CELLULAR_PROCESS_INVOLVED_IN_REPRODUCTION_IN_MULTICELLULAR_ORGANISM, GOBP_FEMALE_GAMETE_GENERATION, GOBP_DEVELOPMENTAL_PROCESS_INVOLVED_IN_REPRODUCTION, chr7q35, GOMF_SEQUENCE_SPECIFIC_DNA_BINDING, MIKKELSEN_ES_ICP_WITH_H3K4ME3, ESC_J1_UP_LATE.V1_DN, GOMF_TRANSCRIPTION_REGULATOR_ACTIVITY, GSE13547_WT_VS_ZFX_KO_BCELL_ANTI_IGM_STIM_2H_DN, GSE10239_MEMORY_VS_KLRG1HIGH_EFF_CD8_TCELL_UP, GSE13306_RA_VS_UNTREATED_TREG_DN, GSE13485_CTRL_VS_DAY3_YF17D_VACCINE_PBMC_UP, GSE13485_DAY1_VS_DAY3_YF17D_VACCINE_PBMC_UP, GSE14308_TH2_VS_NATURAL_TREG_UP
GO Biological Process (3): regulation of transcription by RNA polymerase II (GO:0006357), oogenesis (GO:0048477), cell differentiation (GO:0030154)
GO Molecular Function (5): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), sequence-specific DNA binding (GO:0043565), DNA binding (GO:0003677), DNA-binding transcription factor activity (GO:0003700)
GO Cellular Component (2): chromatin (GO:0000785), nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Maternal to zygotic transition (MZT) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of DNA-templated transcription | 2 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 2 |
| transcription by RNA polymerase II | 1 |
| germ cell development | 1 |
| female gamete generation | 1 |
| cellular developmental process | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| chromatin | 1 |
| DNA-binding transcription factor activity | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| DNA binding | 1 |
| nucleic acid binding | 1 |
| transcription cis-regulatory region binding | 1 |
| transcription regulator activity | 1 |
| chromosome | 1 |
| cellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
848 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NOBOX | FIGLA | Q6QHK4 | 978 |
| NOBOX | SOHLH1 | Q5JUK2 | 942 |
| NOBOX | BMP15 | O95972 | 935 |
| NOBOX | GDF9 | O60383 | 930 |
| NOBOX | LHX8 | Q68G74 | 928 |
| NOBOX | FOXL2 | P58012 | 895 |
| NOBOX | YBX2 | Q9Y2T7 | 880 |
| NOBOX | POF1B | Q8WVV4 | 869 |
| NOBOX | SOHLH2 | Q9NX45 | 748 |
| NOBOX | ZP3 | P21754 | 743 |
| NOBOX | FMR1 | Q06787 | 729 |
| NOBOX | POU5F1 | P31359 | 694 |
| NOBOX | DIAPH2 | O60879 | 693 |
| NOBOX | NR5A1 | Q13285 | 680 |
| NOBOX | ZP1 | P60852 | 659 |
IntAct
2 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NOBOX | CDK2 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (5): CCNJ (Affinity Capture-MS), DHX32 (Affinity Capture-MS), C5orf22 (Affinity Capture-MS), CDK2 (Affinity Capture-MS), CDK5RAP2 (Affinity Capture-MS)
ESM2 similar proteins: A0A5F9ZHS7, A1YGK1, A2T7E6, A8MZG2, O08574, O43593, O60393, O75593, O88621, O95231, P0C1T1, P0CG20, P20428, P97609, Q04667, Q17QR5, Q2KIS6, Q2M1V0, Q2T9Q7, Q32LE6, Q497V6, Q5JUK2, Q5M844, Q5RJB0, Q5TGS1, Q61645, Q61657, Q6ZMY3, Q6ZN32, Q6ZNG2, Q7RTU1, Q8BZW2, Q8CGW9, Q8IWN7, Q8IXT2, Q8IZ20, Q8N1L9, Q8N7G0, Q8N944, Q8N9Y4
Diamond homologs: A1YG25, A2T711, A6NJT0, A6NNA5, A6YP92, G5EC89, O08934, O09113, O14813, O15266, O35085, O35137, O35160, O35602, O35690, O35750, O42115, O42250, O42357, O42358, O42477, O60393, O60902, O70137, O75364, O76971, O93385, O95076, O97039, P0DMV5, P23759, P29506, P41935, P47239, P54821, P56672, P58304, P63013, P63014, P70314
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
218 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 10 |
| Likely pathogenic | 6 |
| Uncertain significance | 136 |
| Likely benign | 24 |
| Benign | 32 |
Top pathogenic / likely-pathogenic (16)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1255994 | NM_001436401.1(NOBOX):c.1690dup (p.Ala564fs) | Pathogenic |
| 1256025 | NM_001436401.1(NOBOX):c.780del (p.Gly261fs) | Pathogenic |
| 1256031 | NM_001436401.1(NOBOX):c.1323_1326del (p.Phe442fs) | Pathogenic |
| 167873 | NM_001436401.1(NOBOX):c.652C>T (p.Arg218Ter) | Pathogenic |
| 167876 | NM_001436401.1(NOBOX):c.696+74G>C | Pathogenic |
| 167877 | NM_001436401.1(NOBOX):c.697G>T (p.Val233Leu) | Pathogenic |
| 2426756 | NC_000007.13:g.(?144094333)(144532695_?)del | Pathogenic |
| 3376873 | NM_001436401.1(NOBOX):c.958del (p.Val320fs) | Pathogenic |
| 957395 | NM_001436401.1(NOBOX):c.971del (p.Pro324fs) | Pathogenic |
| 970942 | NM_001436401.1(NOBOX):c.696+23_696+24dup | Pathogenic |
| 1256013 | NM_001436401.1(NOBOX):c.947G>T (p.Gly316Val) | Likely pathogenic |
| 1256030 | NM_001436401.1(NOBOX):c.848C>T (p.Pro283Leu) | Likely pathogenic |
| 2630292 | NM_001436401.1(NOBOX):c.1138del (p.Cys380fs) | Likely pathogenic |
| 4081552 | NM_001080413.3(NOBOX):c.120T>A (p.Cys40Ter) | Likely pathogenic |
| 812129 | NM_001436401.1(NOBOX):c.727C>T (p.Arg243Ter) | Likely pathogenic |
| 929756 | NM_001436401.1(NOBOX):c.1089G>C (p.Lys363Asn) | Likely pathogenic |
SpliceAI
1318 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:144398585:TG:T | acceptor_gain | 1.0000 |
| 7:144399048:A:T | acceptor_gain | 1.0000 |
| 7:144399392:CTCA:C | donor_loss | 1.0000 |
| 7:144399393:TCACC:T | donor_loss | 1.0000 |
| 7:144399394:CA:C | donor_loss | 1.0000 |
| 7:144399395:A:AG | donor_loss | 1.0000 |
| 7:144399483:C:CC | acceptor_gain | 1.0000 |
| 7:144399490:C:CT | acceptor_gain | 1.0000 |
| 7:144399753:TGAC:T | donor_loss | 1.0000 |
| 7:144399754:GACC:G | donor_loss | 1.0000 |
| 7:144399859:CACAC:C | acceptor_gain | 1.0000 |
| 7:144399861:CAC:C | acceptor_gain | 1.0000 |
| 7:144399864:CT:C | acceptor_loss | 1.0000 |
| 7:144399865:T:C | acceptor_loss | 1.0000 |
| 7:144400203:TAC:T | donor_loss | 1.0000 |
| 7:144400205:CCA:C | donor_loss | 1.0000 |
| 7:144400257:A:AC | donor_gain | 1.0000 |
| 7:144400308:CTGAT:C | acceptor_gain | 1.0000 |
| 7:144400309:TGAT:T | acceptor_gain | 1.0000 |
| 7:144400310:GAT:G | acceptor_gain | 1.0000 |
| 7:144400311:AT:A | acceptor_gain | 1.0000 |
| 7:144400313:C:CC | acceptor_gain | 1.0000 |
| 7:144398366:C:CT | acceptor_gain | 0.9900 |
| 7:144398511:T:TA | donor_gain | 0.9900 |
| 7:144398582:TGATG:T | acceptor_gain | 0.9900 |
| 7:144398587:C:CC | acceptor_gain | 0.9900 |
| 7:144398944:CCTTA:C | donor_loss | 0.9900 |
| 7:144398945:CTTAC:C | donor_loss | 0.9900 |
| 7:144398946:TTA:T | donor_loss | 0.9900 |
| 7:144398948:A:C | donor_loss | 0.9900 |
AlphaMissense
4442 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:144400284:G:C | F291L | 0.998 |
| 7:144400284:G:T | F291L | 0.998 |
| 7:144400286:A:G | F291L | 0.998 |
| 7:144399855:G:C | F352L | 0.997 |
| 7:144399855:G:T | F352L | 0.997 |
| 7:144399857:A:G | F352L | 0.997 |
| 7:144400240:G:T | A306D | 0.997 |
| 7:144399832:C:G | R360P | 0.996 |
| 7:144400285:A:G | F291S | 0.996 |
| 7:144399856:A:G | F352S | 0.995 |
| 7:144400297:A:G | L287P | 0.995 |
| 7:144401055:A:C | Y279D | 0.994 |
| 7:144399848:G:T | R355S | 0.993 |
| 7:144400210:A:G | I316T | 0.993 |
| 7:144400253:G:T | R302S | 0.993 |
| 7:144400285:A:C | F291C | 0.992 |
| 7:144399837:C:A | K358N | 0.991 |
| 7:144399837:C:G | K358N | 0.991 |
| 7:144399847:C:G | R355P | 0.991 |
| 7:144400210:A:C | I316S | 0.991 |
| 7:144400241:C:G | A306P | 0.990 |
| 7:144399834:C:A | W359C | 0.989 |
| 7:144399834:C:G | W359C | 0.989 |
| 7:144399836:A:G | W359R | 0.989 |
| 7:144399836:A:T | W359R | 0.989 |
| 7:144400252:C:G | R302P | 0.989 |
| 7:144399856:A:C | F352C | 0.988 |
| 7:144400286:A:C | F291V | 0.988 |
| 7:144400306:A:G | L284P | 0.987 |
| 7:144399849:A:C | N354K | 0.986 |
dbSNP variants (sampled 300 via entrez): RS1000047551 (7:144402580 C>A,G,T), RS1000063719 (7:144404804 A>C,G,T), RS1000109299 (7:144411509 G>A), RS1000118071 (7:144408383 G>A), RS1000172259 (7:144407993 T>C), RS1000398729 (7:144402878 TC>T), RS1000451863 (7:144406897 T>C), RS1000503515 (7:144406608 T>A), RS1000883825 (7:144412148 A>G), RS1001022982 (7:144404013 T>G), RS1001229494 (7:144408143 C>A), RS1001293169 (7:144397456 T>G), RS1001558639 (7:144403022 G>A), RS1001815748 (7:144408819 G>A,T), RS1001818488 (7:144408796 G>A)
Disease associations
OMIM: gene MIM:610934 | disease phenotypes: MIM:611548, MIM:614458, MIM:311360, MIM:114480
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| premature ovarian failure 5 | Strong | Autosomal dominant |
Mondo (5): premature ovarian failure 5 (MONDO:0012689), childhood encephalopathy due to thiamine pyrophosphokinase deficiency (MONDO:0013761), premature ovarian failure 1 (MONDO:0010706), hereditary breast carcinoma (MONDO:0016419), primary ovarian failure (MONDO:0005387)
Orphanet (5): Rare genetic premature ovarian failure (Orphanet:485382), Childhood encephalopathy due to thiamine pyrophosphokinase deficiency (Orphanet:293955), Fragile X-associated primary ovarian insufficiency (Orphanet:642691), Hereditary breast cancer (Orphanet:227535), NON RARE IN EUROPE: Primary ovarian failure (Orphanet:619)
HPO phenotypes
7 total (7 of 7 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000786 | Primary amenorrhea |
| HP:0000869 | Secondary amenorrhea |
| HP:0008209 | Premature ovarian insufficiency |
| HP:0008724 | Hypoplasia of the ovary |
| HP:0010464 | Streak ovary |
| HP:0033085 | Reduced antral follicle count |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001937_6 | Breast cancer | 7.000000e-11 |
| GCST004988_267 | Breast cancer | 1.000000e-11 |
| GCST005169_4 | Diastolic blood pressure | 4.000000e-06 |
| GCST009391_862 | Metabolite levels | 9.000000e-06 |
| GCST010136_23 | Fruit consumption | 5.000000e-08 |
| GCST010136_24 | Fruit consumption | 1.000000e-48 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006336 | diastolic blood pressure |
| EFO:0010533 | sorbitol measurement |
| EFO:0008111 | diet measurement |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016649 | Primary Ovarian Insufficiency | C12.050.351.500.056.630.750; C12.100.250.056.630.750; C19.391.630.750 |
| C562840 | Breast Cancer, Familial (supp.) | |
| C566921 | Premature Ovarian Failure 5 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
4 total (human), top 4 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Arsenic | affects methylation | 1 |
| Valproic Acid | increases methylation | 1 |
| Aflatoxin B1 | increases methylation | 1 |
| Particulate Matter | increases methylation | 1 |
Clinical trials (associated diseases)
92 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00417066 | PHASE4 | COMPLETED | Flexible GnRH Antagonist vs Flare up GnRH Agonist Protocol in Poor Responders |
| NCT00732693 | PHASE4 | COMPLETED | Evaluation of Physiologic and Standard Sex Steroid Replacement Regimens in Women With Premature Ovarian Failure |
| NCT00837616 | PHASE4 | COMPLETED | Estrogen Dosing in Turner Syndrome: Pharmacology and Metabolism |
| NCT01853501 | PHASE4 | UNKNOWN | Effects of ADSC Therapy in Women With POF |
| NCT02783937 | PHASE4 | COMPLETED | Filgrastim for Premature Ovarian Insufficiency |
| NCT03535480 | PHASE4 | UNKNOWN | Autologous Bone Marrow Stem Cell Ovarian Transplantation to Restore Ovarian Function in Premature Ovarian Failure |
| NCT00140998 | PHASE3 | COMPLETED | Estrogen Treatment (Oral vs. Patches) in Turner Syndrome |
| NCT00001951 | PHASE2 | COMPLETED | Hormone Replacement in Young Women With Premature Ovarian Failure |
| NCT00370019 | PHASE2 | WITHDRAWN | Effects of an Estrogen Replacement Therapy Skin Patch on Ovulation in Women With Premature Ovarian Failure |
| NCT00429494 | PHASE2 | COMPLETED | GnRH Analogue for Ovarian Function Preservation in Hematopoietic Stem Cell Transplantation Patients |
| NCT03816852 | PHASE2 | SUSPENDED | The Safety and Efficiency Study of Mesenchymal Stem Cell (19#iSCLife®-POI) in Premature Ovarian Insufficiency |
| NCT04536467 | PHASE2 | UNKNOWN | Prevention of Chemotherapy-Induced Ovarian Failure With Goserelin in Premenopausal Lymphoma Patients |
| NCT06117982 | PHASE2 | COMPLETED | The Impact of Granulocyte Colony Stimulating Factor on Premature Ovarian Insufficiency |
| NCT03178695 | PHASE1 | COMPLETED | Inovium Ovarian Rejuvenation Trials |
| NCT02912104 | PHASE1 | COMPLETED | A Therapeutic Trial of Human Amniotic Epithelial Cells Transplantation for Primary Ovarian Failure |
| NCT04815213 | PHASE1 | ACTIVE_NOT_RECRUITING | The Use of Expandeded Mesenchymal Stromal Cells (MSC) in Premature Ovarian Failure (POF) in Adult Humans |
| NCT05138367 | PHASE1 | COMPLETED | Effects of UCA-PSCs in Women With POF |
| NCT06132542 | PHASE1 | UNKNOWN | Autologous ADMSC Transplantation in Patients With POI |
| NCT04009473 | PHASE1/PHASE2 | UNKNOWN | Stem Cell Therapy and Growth Factor Ovarian in Vitro Activation |
| NCT05687474 | Not specified | COMPLETED | Baby Detect : Genomic Newborn Screening |
| NCT04031456 | PHASE2/PHASE3 | RECRUITING | Autologous PRP Infusion May Restore Ovarian Function and May Promote Folliculogenesis in POI Patients |
| NCT00471731 | Not specified | COMPLETED | Dry Eye in Women With Turner Syndrome and Women With Premature Ovarian Failure |
| NCT01023178 | Not specified | COMPLETED | Comparison of Transdermal and Oral Estrogens in Adolescent Girls With Ovarian Failure |
| NCT01177891 | Not specified | COMPLETED | Genetic Analysis of Familial Cases of Premature Ovarian Failure |
| NCT02780791 | Not specified | TERMINATED | Maturation of Follicles After Transplantation of Ovarian Tissue Into the Pelvic Wall and the Ovary |
| NCT05443282 | Not specified | COMPLETED | Ovarian Reserve and Matrix Metalloproteinases |
| NCT07117682 | Not specified | NOT_YET_RECRUITING | Safety and Efficacy of Autologous Adipose-Derived Regenerative Cells (ADRCs) Injection for Improving Diminished Ovarian Reserve |
| NCT00040222 | Not specified | COMPLETED | Clinical, Genetic, Behavioral, Laboratory and Epidemiologic Characterization of Individuals and Families at High Risk of Breast/Ovarian Cancer |
| NCT02557776 | Not specified | COMPLETED | Written Genetic Counseling and Mutation Analysis of BRCA1 and BRCA2 to Patients With Breast Cancer |
| NCT03495544 | Not specified | UNKNOWN | Study Estimating Association Between Germline Mutations and PD-L1 Expression in Breast Cancer |
| NCT03959267 | Not specified | COMPLETED | Testing a Culturally Adapted Telephone Genetic Counseling Intervention |
| NCT04058418 | Not specified | COMPLETED | Specialist Recommendation on FBC (Familial Breast Cancer) Chemoprevention Prescribing |
| NCT04125914 | Not specified | ACTIVE_NOT_RECRUITING | Weight Management and Health Behavior Intervention in Lowering Cancer Risk for BRCA Positive and Lynch Syndrome Families |
| NCT04169542 | Not specified | RECRUITING | Impact of COVID-19 Pandemic on Out-of-Pocket Costs, Lost Wages, and Unemployment in Patients With Breast Cancer Undergoing Breast Surgery |
| NCT04197856 | Not specified | ACTIVE_NOT_RECRUITING | Direct Information to At-risk Relatives |
| NCT07292246 | Not specified | RECRUITING | A Prospective CohorT Study of HandX - Assisted ENdoscopic MAstectomy: Feasibility and Safety (ATHENA I Study) |
| NCT07307664 | Not specified | RECRUITING | Increasing Germline Genetic Testing for Patients With Cancer |
| NCT00948857 | PHASE2/PHASE3 | TERMINATED | Dehydroepiandrosterone (DHEA) Treatment and Premature Ovarian Failure (POF) |
| NCT02043743 | PHASE1/PHASE2 | UNKNOWN | Autologous Stem Cells Transplantation in Patients With Idiopathic and Drug Induced Premature Ovarian Failure |
| NCT02062931 | PHASE1/PHASE2 | UNKNOWN | Autologous Mesenchymal Stem Cells Transplantation In Women With Premature Ovarian Failure |
Related Atlas pages
- Associated diseases: premature ovarian failure 5
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): childhood encephalopathy due to thiamine pyrophosphokinase deficiency, hereditary breast carcinoma, premature ovarian failure 1, premature ovarian failure 5