NOSTRIN
gene geneOn this page
Also known as MGC20702
Summary
NOSTRIN (nitric oxide synthase trafficking, HGNC:20203) is a protein-coding gene on chromosome 2q24.3, encoding Nostrin (Q8IVI9). Multivalent adapter protein which may decrease NOS3 activity by inducing its translocation away from the plasma membrane.
Nitric oxide (NO) is a potent mediator in biologic processes such as neurotransmission, inflammatory response, and vascular homeostasis. NOSTRIN binds the enzyme responsible for NO production, endothelial NO synthase (ENOS; MIM 163729), and triggers the translocation of ENOS from the plasma membrane to vesicle-like subcellular structures, thereby attenuating ENOS-dependent NO production.
Source: NCBI Gene 115677 — RefSeq curated summary.
At a glance
- GWAS associations: 22
- Clinical variants (ClinVar): 64 total
- MANE Select transcript:
NM_001039724
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:20203 |
| Approved symbol | NOSTRIN |
| Name | nitric oxide synthase trafficking |
| Location | 2q24.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | MGC20702 |
| Ensembl gene | ENSG00000163072 |
| Ensembl biotype | protein_coding |
| OMIM | 607496 |
| Entrez | 115677 |
Gene structure
Transcript identifiers
Ensembl transcripts: 24 — 18 protein_coding, 4 retained_intron, 2 nonsense_mediated_decay
ENST00000317647, ENST00000397206, ENST00000397209, ENST00000427068, ENST00000439509, ENST00000444448, ENST00000445023, ENST00000447264, ENST00000458381, ENST00000471833, ENST00000472260, ENST00000486873, ENST00000495202, ENST00000868937, ENST00000868938, ENST00000868939, ENST00000868940, ENST00000868941, ENST00000868942, ENST00000868943, ENST00000948119, ENST00000948120, ENST00000948121, ENST00000948122
RefSeq mRNA: 4 — MANE Select: NM_001039724
NM_001039724, NM_001171631, NM_001171632, NM_052946
CCDS: CCDS42771, CCDS42772, CCDS54415, CCDS54416
Canonical transcript exons
ENST00000317647 — 16 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001071328 | 168855352 | 168855460 |
| ENSE00001071330 | 168842992 | 168843117 |
| ENSE00001187453 | 168834227 | 168834325 |
| ENSE00001187459 | 168831472 | 168831534 |
| ENSE00001829457 | 168802637 | 168802673 |
| ENSE00001833413 | 168864834 | 168865514 |
| ENSE00003553962 | 168860795 | 168860909 |
| ENSE00003566393 | 168851279 | 168851404 |
| ENSE00003567428 | 168828158 | 168828220 |
| ENSE00003584752 | 168824634 | 168824717 |
| ENSE00003587023 | 168811567 | 168811652 |
| ENSE00003601482 | 168861960 | 168862049 |
| ENSE00003624468 | 168856690 | 168856778 |
| ENSE00003680194 | 168859512 | 168859637 |
| ENSE00003683795 | 168828420 | 168828501 |
| ENSE00003784633 | 168851084 | 168851182 |
Expression profiles
Bgee: expression breadth ubiquitous, 134 present calls, max score 97.93.
FANTOM5 (CAGE): breadth broad, TPM avg 2.4100 / max 162.8225, expressed in 446 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 23518 | 1.5926 | 303 |
| 23517 | 0.8173 | 342 |
Top tissues by expression
134 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lung | UBERON:0002167 | 97.93 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.90 | gold quality |
| subcutaneous adipose tissue | UBERON:0002190 | 95.31 | gold quality |
| adipose tissue | UBERON:0001013 | 94.97 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 94.95 | gold quality |
| omental fat pad | UBERON:0010414 | 94.60 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 94.58 | gold quality |
| lung | UBERON:0002048 | 94.53 | gold quality |
| rectum | UBERON:0001052 | 94.17 | gold quality |
| body of pancreas | UBERON:0001150 | 94.04 | gold quality |
| calcaneal tendon | UBERON:0003701 | 93.83 | gold quality |
| endometrium | UBERON:0001295 | 93.57 | gold quality |
| endocervix | UBERON:0000458 | 93.49 | gold quality |
| placenta | UBERON:0001987 | 92.88 | gold quality |
| colonic epithelium | UBERON:0000397 | 92.85 | gold quality |
| myometrium | UBERON:0001296 | 92.82 | gold quality |
| body of uterus | UBERON:0009853 | 92.61 | gold quality |
| gall bladder | UBERON:0002110 | 92.33 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 92.09 | gold quality |
| left uterine tube | UBERON:0001303 | 92.08 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 92.07 | gold quality |
| metanephros cortex | UBERON:0010533 | 91.98 | gold quality |
| duodenum | UBERON:0002114 | 91.85 | gold quality |
| fundus of stomach | UBERON:0001160 | 91.82 | gold quality |
| minor salivary gland | UBERON:0001830 | 91.57 | gold quality |
| body of stomach | UBERON:0001161 | 91.47 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 91.36 | gold quality |
| stomach | UBERON:0000945 | 91.02 | gold quality |
| right atrium auricular region | UBERON:0006631 | 90.97 | gold quality |
| ectocervix | UBERON:0012249 | 90.86 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-CURD-119 | yes | 31.01 |
| E-MTAB-6678 | no | 2.42 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): STAT3
miRNA regulators (miRDB)
8 targeting NOSTRIN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-196A-5P | 100.00 | 68.16 | 684 |
| HSA-MIR-196B-5P | 100.00 | 68.16 | 681 |
| HSA-MIR-498-5P | 99.76 | 69.64 | 1807 |
| HSA-MIR-548M | 99.70 | 68.87 | 1749 |
| HSA-MIR-301A-5P | 96.88 | 68.07 | 931 |
| HSA-MIR-301B-5P | 96.88 | 67.75 | 946 |
| HSA-MIR-3059-3P | 96.71 | 67.08 | 606 |
| HSA-MIR-3914 | 94.91 | 65.77 | 643 |
Literature-anchored findings (GeneRIF, showing 12)
- NOSTRIN modulates nitric oxide release and subcellular distribution of endothelial nitric oxide synthase. (PMID:12446846)
- NOSTRIN may facilitate endocytosis of endothelial nitric oxide synthase by coordinating the function of dynamin and the actin nucleation promoting factor N-WASP. (PMID:16234328)
- A ternary complex between NOSTRIN, caveolin-1, and eNOS mediates translocation of eNOS, with important implications for the activity and availability of eNOS in the cell. (PMID:16807357)
- results suggest that nuclear NOSTRINbeta may negatively regulate transcription of the NOSTRIN gene (PMID:18980613)
- NOSTRIN expression was increased in umbilical vessel of women with pre-eclampsia. (PMID:19399414)
- Results reveal an elegant mechanism of eNOS regulation by PECAM-1 through signal transducers and activators of transcription 3-mediated transcriptional control of NOSTRIN. (PMID:21183735)
- The expression of NOSTRIN is decreased, while the activity of eNOS and the level of NO2-/NO3- increased in the testis tissue of azoospermia patients. (PMID:21351530)
- This study showed that overexpression of NOSTRIN had a significant effect on eNOS activity in HUVECs and resulted in significant cellular damage. (PMID:23592143)
- no significant difference in serum level associated with preeclampsia or intrauterine growth restriction (PMID:24588201)
- NOSTRIN inhibited production of nitric oxide (NO) by suppressing the activation of endothelial nitric oxide synthase (eNOS). (PMID:27401251)
- The suggest that scores obtained with the worst nostril are the most efficient in detecting an olfactory disorder. (PMID:28981819)
- Nitric-Oxide Synthase trafficking inducer (NOSTRIN) is an emerging negative regulator of colon cancer progression. (PMID:35642021)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | nostrin | ENSDARG00000077866 |
| mus_musculus | Nostrin | ENSMUSG00000034738 |
| rattus_norvegicus | Nostrin | ENSRNOG00000006611 |
| caenorhabditis_elegans | WBGENE00007983 |
Paralogs (3): SH3KBP1 (ENSG00000147010), CD2AP (ENSG00000198087), SH3D21 (ENSG00000214193)
Protein
Protein identifiers
Nostrin — Q8IVI9 (reviewed: Q8IVI9)
Alternative names: BM247 homolog, Nitric oxide synthase traffic inducer, Nitric oxide synthase trafficker, eNOS-trafficking inducer
All UniProt accessions (4): E9PDM0, Q8IVI9, F8WCW8, H7BZA6
UniProt curated annotations — full annotation on UniProt →
Function. Multivalent adapter protein which may decrease NOS3 activity by inducing its translocation away from the plasma membrane.
Subunit / interactions. Homotrimer. Interacts with DAB2. Interacts with NOS3, DNM2, WASL and CAV1. Interacts (via SH3 domain) with DNM2; this interaction allows the recruitment of NOS3 to dynamin-positive structures.
Subcellular location. Cell membrane. Cytoplasmic vesicle. Cytoplasm. Cytoskeleton Nucleus.
Tissue specificity. Expressed at highest levels in heart, kidney, placenta and lung, and at lowest levels in brain, thymus and spleen. Present in vascular endothelial cells and placenta. Over-expressed in placenta from women with pre-eclampsia (at protein level).
Domain organisation. The SH3 domain mediates interaction with NOS3, DNM2 and WASL. The F-BAR domain is necessary for membrane targeting.
Miscellaneous. May negatively regulate transcription of the NOSTRIN gene.
Isoforms (4)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8IVI9-1 | 1, NOSTRINalpha | yes |
| Q8IVI9-2 | 2 | |
| Q8IVI9-3 | 3, NOSTRINbeta | |
| Q8IVI9-4 | 4 |
RefSeq proteins (4): NP_001034813, NP_001165102, NP_001165103, NP_443178 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001060 | FCH_dom | Domain |
| IPR001452 | SH3_domain | Domain |
| IPR011072 | HR1_rho-bd | Domain |
| IPR027267 | AH/BAR_dom_sf | Homologous_superfamily |
| IPR031160 | F_BAR_dom | Domain |
| IPR035656 | Nostrin_SH3 | Domain |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
| IPR036274 | HR1_rpt_sf | Homologous_superfamily |
| IPR057870 | HR1_TOCA | Domain |
Pfam: PF00611, PF14604, PF25610
UniProt features (19 total): strand 6, domain 3, splice variant 3, sequence conflict 2, modified residue 2, chain 1, sequence variant 1, coiled-coil region 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2YUN | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8IVI9-F1 | 87.36 | 0.62 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (2): 114, 479
Function
Pathways and Gene Ontology
Reactome pathways
1 pathways
| ID | Pathway |
|---|---|
| R-HSA-203641 | NOSTRIN mediated eNOS trafficking |
MSigDB gene sets: 105 (showing top):
BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_DN, BHATI_G2M_ARREST_BY_2METHOXYESTRADIOL_DN, GOBP_VESICLE_MEDIATED_TRANSPORT, NF1_Q6_01, chr2q24, HFH8_01, CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_5, RYTTCCTG_ETS2_B, ELK1_01, CUI_TCF21_TARGETS_2_DN, RGAGGAARY_PU1_Q6, GOBP_IMPORT_INTO_CELL, IVANOVA_HEMATOPOIESIS_INTERMEDIATE_PROGENITOR, GOBP_ENDOCYTOSIS, GOCC_ENDOCYTIC_VESICLE
GO Biological Process (3): endocytosis (GO:0006897), signal transduction (GO:0007165), negative regulation of DNA-templated transcription (GO:0045892)
GO Molecular Function (2): DNA binding (GO:0003677), protein binding (GO:0005515)
GO Cellular Component (8): nucleus (GO:0005634), cytoskeleton (GO:0005856), plasma membrane (GO:0005886), endocytic vesicle membrane (GO:0030666), cytoplasm (GO:0005737), membrane (GO:0016020), cytoplasmic vesicle (GO:0031410), organelle (GO:0043226)
Reactome top-level categories
Rollup of top-1 pathways:
| Category | Pathways |
|---|---|
| Metabolism of nitric oxide: NOS3 activation and regulation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| vesicle budding from membrane | 1 |
| membrane invagination | 1 |
| vesicle-mediated transport | 1 |
| import into cell | 1 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| DNA-templated transcription | 1 |
| regulation of DNA-templated transcription | 1 |
| negative regulation of RNA biosynthetic process | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| intracellular membrane-bounded organelle | 1 |
| intracellular membraneless organelle | 1 |
| membrane | 1 |
| cell periphery | 1 |
| endocytic vesicle | 1 |
| cytoplasmic vesicle membrane | 1 |
| bounding membrane of organelle | 1 |
| intracellular anatomical structure | 1 |
| cytoplasm | 1 |
| intracellular vesicle | 1 |
Protein interactions and networks
STRING
1452 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NOSTRIN | CAV1 | Q03135 | 740 |
| NOSTRIN | NOSIP | Q9Y314 | 675 |
| NOSTRIN | NOS3 | P29474 | 665 |
| NOSTRIN | DNM2 | P50570 | 609 |
| NOSTRIN | WAS | P42768 | 472 |
| NOSTRIN | TRIP10 | Q15642 | 459 |
| NOSTRIN | ADGRD2 | Q7Z7M1 | 426 |
| NOSTRIN | FCHSD1 | Q86WN1 | 413 |
| NOSTRIN | COL19A1 | Q14993 | 407 |
| NOSTRIN | NUBPL | Q8TB37 | 406 |
| NOSTRIN | PACSIN2 | Q9UNF0 | 396 |
| NOSTRIN | FCHO2 | Q0JRZ9 | 393 |
| NOSTRIN | FCHO1 | O14526 | 393 |
| NOSTRIN | FNBP1L | Q5T0N5 | 386 |
| NOSTRIN | FNBP1 | Q96RU3 | 385 |
IntAct
163 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| NOS3 | NOSTRIN | psi-mi:“MI:0915”(physical association) | 0.730 |
| NOSTRIN | NOS3 | psi-mi:“MI:0915”(physical association) | 0.730 |
| NOSTRIN | NOS3 | psi-mi:“MI:0403”(colocalization) | 0.730 |
| FGFR1 | NOSTRIN | psi-mi:“MI:0407”(direct interaction) | 0.630 |
| NOSTRIN | FGFR1 | psi-mi:“MI:0915”(physical association) | 0.630 |
| FGFR1 | NOSTRIN | psi-mi:“MI:0915”(physical association) | 0.630 |
| DNM1 | NOSTRIN | psi-mi:“MI:0915”(physical association) | 0.520 |
| NOSTRIN | Wasl | psi-mi:“MI:0915”(physical association) | 0.520 |
| Wasl | NOSTRIN | psi-mi:“MI:0915”(physical association) | 0.520 |
| DLG3 | NOSTRIN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | TIAM2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| APBA3 | NOSTRIN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | LIN7C | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | MAGI2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | PICK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | PDZK1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | HTRA4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | TAX1BP3 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| NOSTRIN | MPP2 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
BioGRID (18): NOSTRIN (Affinity Capture-MS), NOSTRIN (Synthetic Lethality), NOSTRIN (Affinity Capture-MS), MAGEA6 (Two-hybrid), NOSTRIN (Two-hybrid), NOS3 (Two-hybrid), NOSTRIN (Affinity Capture-Western), NOS3 (Affinity Capture-Western), NOS3 (Reconstituted Complex), NOS3 (Co-localization), NOSTRIN (Two-hybrid), NOSTRIN (Affinity Capture-MS), NOSTRIN (Affinity Capture-MS), NOSTRIN (Cross-Linking-MS (XL-MS)), CRABP1 (Cross-Linking-MS (XL-MS))
ESM2 similar proteins: A0A1B7YDZ4, B1H267, B3STP6, O14243, O43150, O97902, P34445, P40531, P47057, P91124, Q09746, Q10253, Q1AAU6, Q2KJA1, Q2KJB5, Q2T9M1, Q3ZBM5, Q4R7Q5, Q54XE8, Q5PPZ5, Q5R613, Q5REH1, Q62083, Q62419, Q68FW8, Q6CTQ0, Q6FPT9, Q6NRL2, Q6P8X1, Q75C43, Q7SIG6, Q7XPJ0, Q80ZJ7, Q86XE0, Q8IVI9, Q99961, Q9C6C3, Q9D8U8, Q9EP80, Q9FG38
Diamond homologs: A1X283, A1ZAY1, A2AAY5, A4RE77, A6NI72, A6SED8, A7EK16, A8MVU1, A8N2Y6, A8PWF6, B0CRJ3, F1M707, O00443, O43586, O77774, O89032, P0CP00, P0CP01, P10569, P14598, P29366, P62484, P97814, Q09014, Q1LYG0, Q2HDI2, Q2KJB5, Q54FG5, Q5I0D6, Q5RAY1, Q5TCX8, Q5TCZ1, Q61194, Q6WKZ7, Q7Z8J6, Q8IVI9, Q8VDG6, Q9NYB9, Q9QX73, Q9Y7Z8
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 103 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Ras activation upon Ca2+ influx through NMDA receptor | 5 | 40.2× | 1e-05 |
| Unblocking of NMDA receptors, glutamate binding and activation | 5 | 38.3× | 1e-05 |
| Negative regulation of NMDA receptor-mediated neuronal transmission | 5 | 38.3× | 1e-05 |
| Long-term potentiation | 5 | 33.5× | 2e-05 |
| Assembly and cell surface presentation of NMDA receptors | 9 | 32.2× | 1e-09 |
| Neurexins and neuroligins | 10 | 27.7× | 8e-10 |
| Protein-protein interactions at synapses | 6 | 22.4× | 2e-05 |
| NRAGE signals death through JNK | 5 | 13.0× | 1e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| establishment or maintenance of epithelial cell apical/basal polarity | 11 | 66.6× | 3e-15 |
| protein localization to synapse | 6 | 47.9× | 4e-07 |
| receptor clustering | 7 | 45.5× | 5e-08 |
| regulation of postsynaptic membrane neurotransmitter receptor levels | 7 | 36.1× | 2e-07 |
| establishment or maintenance of cell polarity | 5 | 20.9× | 3e-04 |
| establishment of cell polarity | 5 | 19.9× | 3e-04 |
| bicellular tight junction assembly | 5 | 17.2× | 6e-04 |
| protein-containing complex assembly | 10 | 11.9× | 2e-06 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
64 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 39 |
| Likely benign | 3 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
2432 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 2:168802670:TCCGG:T | donor_loss | 1.0000 |
| 2:168802671:CCGGT:C | donor_loss | 1.0000 |
| 2:168802672:CGGTG:C | donor_loss | 1.0000 |
| 2:168824715:AAGG:A | donor_loss | 1.0000 |
| 2:168824716:AGG:A | donor_loss | 1.0000 |
| 2:168824718:G:T | donor_loss | 1.0000 |
| 2:168824719:T:G | donor_loss | 1.0000 |
| 2:168828406:T:G | acceptor_gain | 1.0000 |
| 2:168828412:A:AG | acceptor_gain | 1.0000 |
| 2:168828413:T:G | acceptor_gain | 1.0000 |
| 2:168828415:TCCA:T | acceptor_loss | 1.0000 |
| 2:168828416:CCAG:C | acceptor_loss | 1.0000 |
| 2:168828417:CAG:C | acceptor_loss | 1.0000 |
| 2:168828418:A:AG | acceptor_gain | 1.0000 |
| 2:168828418:A:G | acceptor_loss | 1.0000 |
| 2:168828419:G:A | acceptor_loss | 1.0000 |
| 2:168828419:G:GG | acceptor_gain | 1.0000 |
| 2:168828419:GA:G | acceptor_gain | 1.0000 |
| 2:168828419:GAA:G | acceptor_gain | 1.0000 |
| 2:168828419:GAAA:G | acceptor_gain | 1.0000 |
| 2:168828419:GAAAA:G | acceptor_gain | 1.0000 |
| 2:168828497:AATCA:A | donor_gain | 1.0000 |
| 2:168828498:ATCA:A | donor_gain | 1.0000 |
| 2:168828499:TCA:T | donor_gain | 1.0000 |
| 2:168828500:CA:C | donor_gain | 1.0000 |
| 2:168828500:CAG:C | donor_loss | 1.0000 |
| 2:168828501:AGT:A | donor_loss | 1.0000 |
| 2:168828502:G:GG | donor_gain | 1.0000 |
| 2:168828502:GT:G | donor_loss | 1.0000 |
| 2:168828503:T:A | donor_loss | 1.0000 |
AlphaMissense
3365 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 2:168864909:T:C | F487S | 0.996 |
| 2:168824634:G:C | R38S | 0.995 |
| 2:168824634:G:T | R38S | 0.995 |
| 2:168862010:T:C | F449L | 0.994 |
| 2:168862012:T:A | F449L | 0.994 |
| 2:168862012:T:G | F449L | 0.994 |
| 2:168824642:T:C | L41P | 0.993 |
| 2:168824666:T:C | L49P | 0.993 |
| 2:168828174:T:A | W72R | 0.993 |
| 2:168828174:T:C | W72R | 0.993 |
| 2:168828207:G:C | A83P | 0.993 |
| 2:168862035:T:C | L457S | 0.993 |
| 2:168824635:G:C | A39P | 0.992 |
| 2:168828216:C:G | H86D | 0.991 |
| 2:168864882:G:A | G478E | 0.991 |
| 2:168824656:G:C | A46P | 0.990 |
| 2:168828428:G:A | G90D | 0.989 |
| 2:168859531:T:C | L358P | 0.989 |
| 2:168859539:G:C | A361P | 0.987 |
| 2:168864908:T:C | F487L | 0.987 |
| 2:168864910:T:A | F487L | 0.987 |
| 2:168864910:T:G | F487L | 0.987 |
| 2:168811652:G:C | R38T | 0.986 |
| 2:168859553:A:C | K365N | 0.986 |
| 2:168859553:A:T | K365N | 0.986 |
| 2:168864909:T:G | F487C | 0.986 |
| 2:168824657:C:A | A46D | 0.984 |
| 2:168824645:A:T | E42V | 0.983 |
| 2:168859555:T:C | L366P | 0.982 |
| 2:168862041:T:C | L459S | 0.982 |
dbSNP variants (sampled 300 via entrez): RS1000066338 (2:168848333 T>TG), RS1000132992 (2:168835365 C>A), RS1000209452 (2:168857767 G>A), RS1000221580 (2:168788564 A>G), RS1000258116 (2:168829152 A>G), RS1000273804 (2:168788874 TACAC>T,TAC,TACACAC), RS1000296896 (2:168841758 A>T), RS1000309163 (2:168810100 A>C,G,T), RS1000316082 (2:168823226 C>G,T), RS1000319926 (2:168851747 G>A), RS1000327229 (2:168823040 G>A,T), RS1000343994 (2:168799463 T>G), RS1000373171 (2:168836668 A>G), RS1000464482 (2:168797257 T>A,C,G), RS1000478804 (2:168816852 T>C)
Disease associations
OMIM: gene MIM:607496 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
22 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002616_21 | Mitochondrial DNA levels | 8.000000e-06 |
| GCST004610_48 | White blood cell count | 5.000000e-16 |
| GCST004613_82 | Sum neutrophil eosinophil counts | 1.000000e-14 |
| GCST004614_132 | Granulocyte count | 6.000000e-15 |
| GCST004620_47 | Sum basophil neutrophil counts | 1.000000e-14 |
| GCST004625_54 | Monocyte count | 8.000000e-14 |
| GCST004626_20 | Myeloid white cell count | 1.000000e-16 |
| GCST004629_25 | Neutrophil count | 5.000000e-14 |
| GCST008163_593 | Height | 3.000000e-06 |
| GCST010698_85 | Subcortical volume (min-P) | 4.000000e-19 |
| GCST010699_3 | Brain morphology (min-P) | 4.000000e-11 |
| GCST010700_55 | Cortical thickness (MOSTest) | 7.000000e-120 |
| GCST010701_34 | Cortical surface area (MOSTest) | 1.000000e-26 |
| GCST010702_11 | Subcortical volume (MOSTest) | 4.000000e-08 |
| GCST010703_69 | Brain morphology (MOSTest) | 2.000000e-08 |
| GCST90000025_823 | Appendicular lean mass | 3.000000e-24 |
| GCST90002381_52 | Eosinophil count | 4.000000e-09 |
| GCST90002393_386 | Monocyte count | 7.000000e-21 |
| GCST90002398_107 | Neutrophil count | 2.000000e-23 |
| GCST90002407_75 | White blood cell count | 3.000000e-26 |
| GCST90011899_74 | Aspartate aminotransferase levels | 5.000000e-18 |
| GCST90020028_100 | Hip circumference adjusted for BMI | 3.000000e-09 |
EFO canonical traits (11, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0006312 | mitochondrial DNA measurement |
| EFO:0004833 | neutrophil count |
| EFO:0004842 | eosinophil count |
| EFO:0007987 | granulocyte count |
| EFO:0005090 | basophil count |
| EFO:0005091 | monocyte count |
| EFO:0004346 | neuroimaging measurement |
| EFO:0004840 | cortical thickness |
| EFO:0004980 | appendicular lean mass |
| EFO:0004736 | aspartate aminotransferase measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | affects splicing, increases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation, increases expression | 2 |
| Nickel | decreases expression | 2 |
| methyleugenol | increases expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity, increases expression | 1 |
| polyhexamethyleneguanidine | affects expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| CGP 52608 | increases reaction, affects binding | 1 |
| entinostat | increases expression | 1 |
| quinocetone | increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Zoledronic Acid | decreases expression | 1 |
| Leflunomide | decreases expression | 1 |
| Air Pollutants | increases expression | 1 |
| Arsenic | affects methylation | 1 |
| Endosulfan | increases expression | 1 |
| Estradiol | affects cotreatment, increases expression | 1 |
| Gallic Acid | increases expression | 1 |
| Hydrogen Peroxide | affects expression | 1 |
| Niclosamide | decreases expression | 1 |
| Silicon Dioxide | decreases expression | 1 |
| Testosterone | decreases expression | 1 |
| Urethane | decreases expression | 1 |
| Vitamin K 3 | affects expression | 1 |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.