NOVA1-DT

Summary

NOVA1-DT (NOVA1 divergent transcript, HGNC:19827) is a long non-coding RNA gene on chromosome 14q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:19827
Approved symbol	NOVA1-DT
Name	NOVA1 divergent transcript
Location	14q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000257842
Ensembl biotype	lncRNA
Entrez	102725045
RNAcentral	URS0000BC4472 — lncRNA, 2252 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000547786, ENST00000548328, ENST00000552101, ENST00000552826, ENST00000653681, ENST00000656336, ENST00000656804, ENST00000662478, ENST00000663208, ENST00000667328, ENST00000671020

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000547786 — 4 exons

Exon	Start	End
ENSE00002328355	26664040	26664407
ENSE00002349977	26663613	26663786
ENSE00002391519	26637195	26637333
ENSE00002406185	26598412	26598548

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 83.88.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.88	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	78.60	gold quality
mucosa of transverse colon	UBERON:0004991	73.24	gold quality
testis	UBERON:0000473	69.59	gold quality
left testis	UBERON:0004533	69.08	gold quality
right testis	UBERON:0004534	68.60	gold quality
rectum	UBERON:0001052	65.96	gold quality
ventricular zone	UBERON:0003053	62.68	gold quality
cortical plate	UBERON:0005343	61.98	gold quality
transverse colon	UBERON:0001157	58.34	gold quality
monocyte	CL:0000576	58.31	gold quality
hypothalamus	UBERON:0001898	58.31	gold quality
ganglionic eminence	UBERON:0004023	57.84	gold quality
calcaneal tendon	UBERON:0003701	56.53	gold quality
colon	UBERON:0001155	56.01	gold quality
corpus callosum	UBERON:0002336	55.94	gold quality
amygdala	UBERON:0001876	55.74	gold quality
prefrontal cortex	UBERON:0000451	55.03	gold quality
substantia nigra	UBERON:0002038	54.98	gold quality
placenta	UBERON:0001987	54.68	gold quality
intestine	UBERON:0000160	54.67	gold quality
blood	UBERON:0000178	54.00	gold quality
primary visual cortex	UBERON:0002436	53.27	gold quality
tonsil	UBERON:0002372	52.59	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.27	silver quality
adult mammalian kidney	UBERON:0000082	52.16	gold quality
cerebellum	UBERON:0002037	52.14	gold quality
anterior cingulate cortex	UBERON:0009835	52.13	gold quality
cerebellar cortex	UBERON:0002129	52.10	gold quality
frontal cortex	UBERON:0001870	51.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.54

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.