NRG2
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Also known as Don-1NTAKHRG2
Summary
NRG2 (neuregulin 2, HGNC:7998) is a protein-coding gene on chromosome 5q31.2, encoding Pro-neuregulin-2, membrane-bound isoform (O14511). Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors.
This gene encodes a novel member of the neuregulin family of growth and differentiation factors. Through interaction with the ERBB family of receptors, this protein induces the growth and differentiation of epithelial, neuronal, glial, and other types of cells. The gene consists of 12 exons and the genomic structure is similar to that of neuregulin 1, another member of the neuregulin family of ligands. The products of these genes mediate distinct biological processes by acting at different sites in tissues and eliciting different biological responses in cells. This gene is located close to the region for demyelinating Charcot-Marie-Tooth disease locus, but is not responsible for this disease. Alternative transcript variants encoding distinct isoforms have been described.
Source: NCBI Gene 9542 — RefSeq curated summary.
At a glance
- Gene–disease (curated): intellectual disability (Limited, GenCC)
- GWAS associations: 4
- Clinical variants (ClinVar): 134 total
- MANE Select transcript:
NM_004883
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:7998 |
| Approved symbol | NRG2 |
| Name | neuregulin 2 |
| Location | 5q31.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Don-1, NTAK, HRG2 |
| Ensembl gene | ENSG00000158458 |
| Ensembl biotype | protein_coding |
| OMIM | 603818 |
| Entrez | 9542 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 7 protein_coding, 2 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000289409, ENST00000289422, ENST00000340391, ENST00000358522, ENST00000361474, ENST00000378238, ENST00000518130, ENST00000519478, ENST00000541337, ENST00000956720
RefSeq mRNA: 6 — MANE Select: NM_004883
NM_001184935, NM_001410780, NM_004883, NM_013981, NM_013982, NM_013983
CCDS: CCDS4217, CCDS54910, CCDS93793
Canonical transcript exons
ENST00000361474 — 10 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001039022 | 139865549 | 139865625 |
| ENSE00002296594 | 140042370 | 140043299 |
| ENSE00003491263 | 139846781 | 139848697 |
| ENSE00003543174 | 139852904 | 139853027 |
| ENSE00003568489 | 139851604 | 139851831 |
| ENSE00003585293 | 139887340 | 139887511 |
| ENSE00003589254 | 139880856 | 139880974 |
| ENSE00003597009 | 139871721 | 139871841 |
| ENSE00003613079 | 139852432 | 139852559 |
| ENSE00003640351 | 139855676 | 139855778 |
Expression profiles
Bgee: expression breadth ubiquitous, 204 present calls, max score 96.76.
FANTOM5 (CAGE): breadth broad, TPM avg 1.0835 / max 60.6370, expressed in 416 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 63779 | 0.8892 | 367 |
| 63777 | 0.1942 | 106 |
Top tissues by expression
268 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| buccal mucosa cell | CL:0002336 | 96.76 | gold quality |
| paraflocculus | UBERON:0005351 | 92.28 | gold quality |
| frontal pole | UBERON:0002795 | 91.08 | gold quality |
| middle frontal gyrus | UBERON:0002702 | 89.94 | gold quality |
| Brodmann (1909) area 10 | UBERON:0013541 | 84.46 | gold quality |
| cerebellar vermis | UBERON:0004720 | 82.80 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 82.27 | gold quality |
| cerebellar cortex | UBERON:0002129 | 82.16 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 82.14 | gold quality |
| cerebellum | UBERON:0002037 | 81.96 | gold quality |
| endometrium epithelium | UBERON:0004811 | 81.31 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.54 | silver quality |
| gastrocnemius | UBERON:0001388 | 78.31 | gold quality |
| left ovary | UBERON:0002119 | 77.94 | gold quality |
| right ovary | UBERON:0002118 | 77.49 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 76.53 | gold quality |
| muscle of leg | UBERON:0001383 | 76.20 | gold quality |
| minor salivary gland | UBERON:0001830 | 74.89 | gold quality |
| endocervix | UBERON:0000458 | 74.82 | gold quality |
| ovary | UBERON:0000992 | 74.39 | gold quality |
| right adrenal gland | UBERON:0001233 | 73.93 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 73.87 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 73.79 | gold quality |
| left adrenal gland | UBERON:0001234 | 73.20 | gold quality |
| ectocervix | UBERON:0012249 | 73.08 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 73.06 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 72.78 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 72.72 | silver quality |
| apex of heart | UBERON:0002098 | 72.47 | gold quality |
| adrenal cortex | UBERON:0001235 | 72.01 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 2.82 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
67 targeting NRG2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-6740-5P | 100.00 | 65.64 | 932 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-3925-3P | 100.00 | 69.95 | 1237 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-3662 | 99.99 | 73.82 | 5684 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-374A-5P | 99.90 | 71.34 | 2923 |
| HSA-MIR-374B-5P | 99.90 | 69.98 | 2734 |
| HSA-MIR-129-5P | 99.88 | 70.26 | 3273 |
| HSA-MIR-137-3P | 99.87 | 74.74 | 2401 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-3121-3P | 99.82 | 71.96 | 3630 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-4639-5P | 99.81 | 67.37 | 1028 |
| HSA-MIR-6885-3P | 99.75 | 70.36 | 3187 |
| HSA-MIR-3617-5P | 99.75 | 69.41 | 1968 |
| HSA-MIR-641 | 99.75 | 69.35 | 1975 |
| HSA-MIR-4446-5P | 99.72 | 69.19 | 2544 |
Literature-anchored findings (GeneRIF, showing 12)
- examination of the effect of isoforms on angiogenesis (PMID:14722120)
- Nrg-2-induced Acetylcholine Receptor transcription requires an N-box motif and is regulated by alternative splicing. (PMID:15961242)
- Linkage interval for GLC1M was refined to a smaller region. The NRG2 gene was excluded as the causative gene for juvenile-onset primary open angle glaucoma. (PMID:17563728)
- Gln43 of NRG2beta is both necessary and sufficient for NRG2 stimulation of ErbB4 coupling to IL3 independence. (PMID:17945187)
- NRG2 was positive in almost all breast cancers studied. High expression is related to the biological aggressiveness of breast cancer. (PMID:17962208)
- reduced expression of NRG2 led to marginal increase in cell survival under arsenite-induced stress. (PMID:27345716)
- Development and application of high-throughput screens for the discovery of compounds that disrupt ErbB4 signaling: Candidate cancer therapeutics. (PMID:33378376)
- Neuregulin 2 (NRG2) is expressed in gliomas and promotes migration of human glioma cells. (PMID:34284546)
- [Neuregulin 2 is highly expressed in glioma tissues to regulate glial fibrillary acidic protein expression via Akt signaling]. (PMID:34549707)
- NRG1 and NRG2 fusion positive solid tumor malignancies: a paradigm of ligand-fusion oncogenesis. (PMID:34996744)
- The relevance of EGFR, ErbB receptors and neuregulins in human adipocytes and adipose tissue in obesity. (PMID:36411648)
- Neuregulin 2 Is a Candidate Gene for Autism Spectrum Disorder. (PMID:38791584)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | nrg2a | ENSDARG00000077818 |
| danio_rerio | nrg2b | ENSDARG00000086585 |
| mus_musculus | Nrg2 | ENSMUSG00000060275 |
| rattus_norvegicus | Nrg2 | ENSRNOG00000019093 |
Paralogs (3): NRG1 (ENSG00000157168), NRG4 (ENSG00000169752), NRG3 (ENSG00000185737)
Protein
Protein identifiers
Pro-neuregulin-2, membrane-bound isoform — O14511 (reviewed: O14511)
All UniProt accessions (2): O14511, F5GZS7
UniProt curated annotations — full annotation on UniProt →
Function. Direct ligand for ERBB3 and ERBB4 tyrosine kinase receptors. Concomitantly recruits ERBB1 and ERBB2 coreceptors, resulting in ligand-stimulated tyrosine phosphorylation and activation of the ERBB receptors. May also promote the heterodimerization with the EGF receptor.
Subunit / interactions. Interacts with ERBB3 and ERBB4.
Subcellular location. Cell membrane Secreted.
Tissue specificity. Restricted to the cerebellum in the adult.
Post-translational modifications. Proteolytic cleavage close to the plasma membrane on the external face leads to the release of the soluble growth factor form. Extensive glycosylation precedes the proteolytic cleavage.
Domain organisation. The cytoplasmic domain may be involved in the regulation of trafficking and proteolytic processing. Regulation of the proteolytic processing involves initial intracellular domain dimerization. ERBB receptor binding is elicited entirely by the EGF-like domain.
Miscellaneous. May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay.
Similarity. Belongs to the neuregulin family.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O14511-1 | 1 | yes |
| O14511-2 | 2 | |
| O14511-3 | 3 | |
| O14511-4 | 4 | |
| O14511-5 | 5 | |
| O14511-6 | 6 | |
| O14511-7 | DON-1B | |
| O14511-8 | DON-1R |
RefSeq proteins (6): NP_001171864, NP_001397709, NP_004874, NP_053584, NP_053585, NP_053586 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000742 | EGF | Domain |
| IPR002154 | Neuregulin_C | Domain |
| IPR003598 | Ig_sub2 | Domain |
| IPR003599 | Ig_sub | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR013098 | Ig_I-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR040180 | Neuregulin | Family |
| IPR057909 | NRG2_N | Domain |
| IPR057911 | NRG2_Ig-like | Domain |
Pfam: PF02158, PF07679, PF25518
UniProt features (39 total): splice variant 9, compositionally biased region 7, region of interest 6, glycosylation site 5, disulfide bond 4, chain 2, topological domain 2, domain 2, propeptide 1, transmembrane region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O14511-F1 | 55.58 | 0.10 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (4): 257–311, 345–359, 353–370, 372–381
Glycosylation sites (5): 52, 53, 147, 278, 346
Function
Pathways and Gene Ontology
Reactome pathways
19 pathways
| ID | Pathway |
|---|---|
| R-HSA-1227986 | Signaling by ERBB2 |
| R-HSA-1236394 | Signaling by ERBB4 |
| R-HSA-1250196 | SHC1 events in ERBB2 signaling |
| R-HSA-1250342 | PI3K events in ERBB4 signaling |
| R-HSA-1250347 | SHC1 events in ERBB4 signaling |
| R-HSA-1251985 | Nuclear signaling by ERBB4 |
| R-HSA-1257604 | PIP3 activates AKT signaling |
| R-HSA-1306955 | GRB7 events in ERBB2 signaling |
| R-HSA-1358803 | Downregulation of ERBB2:ERBB3 signaling |
| R-HSA-1963640 | GRB2 events in ERBB2 signaling |
| R-HSA-1963642 | PI3K events in ERBB2 signaling |
| R-HSA-2219530 | Constitutive Signaling by Aberrant PI3K in Cancer |
| R-HSA-5673001 | RAF/MAP kinase cascade |
| R-HSA-6785631 | ERBB2 Regulates Cell Motility |
| R-HSA-6811558 | PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling |
| R-HSA-8847993 | ERBB2 Activates PTK6 Signaling |
| R-HSA-8863795 | Downregulation of ERBB2 signaling |
| R-HSA-9664565 | Signaling by ERBB2 KD Mutants |
| R-HSA-9665686 | Signaling by ERBB2 TMD/JMD mutants |
MSigDB gene sets: 166 (showing top):
RNGTGGGC_UNKNOWN, MODULE_52, MODULE_92, BENPORATH_ES_WITH_H3K27ME3, MODULE_45, GOMF_GROWTH_FACTOR_ACTIVITY, MODULE_16, GGGTGGRR_PAX4_03, CAGCTG_AP4_Q5, MODULE_66, MODULE_118, KEGG_ERBB_SIGNALING_PATHWAY, MODULE_379, GOBP_ERBB_SIGNALING_PATHWAY, PID_ERBB4_PATHWAY
GO Biological Process (5): signal transduction (GO:0007165), nervous system development (GO:0007399), intracellular signal transduction (GO:0035556), ERBB4 signaling pathway (GO:0038130), animal organ development (GO:0048513)
GO Molecular Function (2): signaling receptor binding (GO:0005102), growth factor activity (GO:0008083)
GO Cellular Component (4): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Signaling by ERBB2 | 7 |
| Signaling by ERBB4 | 3 |
| Signaling by Receptor Tyrosine Kinases | 2 |
| Signaling by ERBB2 in Cancer | 2 |
| Intracellular signaling by second messengers | 1 |
| Downregulation of ERBB2 signaling | 1 |
| PI3K/AKT Signaling in Cancer | 1 |
| MAPK1/MAPK3 signaling | 1 |
| Negative regulation of the PI3K/AKT network | 1 |
| Signaling by PTK6 | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 2 |
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| system development | 1 |
| intracellular anatomical structure | 1 |
| signal transduction | 1 |
| ERBB signaling pathway | 1 |
| anatomical structure development | 1 |
| protein binding | 1 |
| receptor ligand activity | 1 |
| membrane | 1 |
| cell periphery | 1 |
Protein interactions and networks
STRING
1460 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NRG2 | ERBB3 | P21860 | 998 |
| NRG2 | ERBB4 | Q15303 | 998 |
| NRG2 | NRG4 | Q8WWG1 | 973 |
| NRG2 | EGFR | P00533 | 959 |
| NRG2 | ERBB2 | P04626 | 930 |
| NRG2 | EGF | P01133 | 821 |
| NRG2 | AREG | P15514 | 742 |
| NRG2 | PVALB | P20472 | 665 |
| NRG2 | BTC | P35070 | 663 |
| NRG2 | EREG | O14944 | 630 |
| NRG2 | EPGN | Q6UW88 | 615 |
| NRG2 | HBEGF | Q99075 | 571 |
| NRG2 | NRG3 | P56975 | 566 |
| NRG2 | WDR36 | Q8NI36 | 553 |
| NRG2 | TGFA | P01135 | 506 |
IntAct
6 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| BMP2K | NRG2 | psi-mi:“MI:0915”(physical association) | 0.490 |
| NRG2 | TSC22D2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| MPIG6B | NRG2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| LRRTM2 | NRG2 | psi-mi:“MI:0915”(physical association) | 0.400 |
BioGRID (7): NRG2 (Reconstituted Complex), NRG2 (Reconstituted Complex), NRG2 (Affinity Capture-RNA), NRG2 (Affinity Capture-RNA), TSC22D2 (Affinity Capture-MS), ERBB4 (Reconstituted Complex), ERBB3 (Reconstituted Complex)
ESM2 similar proteins: A0A1B0GUA5, A0A286YF58, A0A494C0N9, A0A494C0Y3, A0A7I2V3R4, A0JNN8, A2ARS0, A2VDX9, A5PJP1, A6NGB7, A8MVW0, C9JTQ0, O14511, O14559, O35392, O35569, O43541, O60548, O70220, P0DPE3, Q08102, Q14V87, Q19A40, Q29RK8, Q2HJ59, Q3TYP4, Q5BLP8, Q5T442, Q63244, Q6F5E0, Q6QNY0, Q6VUP9, Q80WY3, Q80XF7, Q8BQU6, Q8K025, Q8K071, Q8TD94, Q8WY41, Q8WZ71
Diamond homologs: A2AJ76, A2ASS6, D3YXG0, G4SLH0, O01761, O08775, O14511, O35136, O35181, O35569, O60469, O89026, O93383, P07522, P0DMY9, P0DMZ0, P12960, P13591, P14781, P22063, P28685, P35918, P43322, P56974, P56975, P57087, P86468, Q00968, Q02246, Q02297, Q05199, Q12860, Q5DTJ9, Q61330, Q62718, Q63198, Q6DR98, Q86TC9, Q8NDA2, Q8VHZ8
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NRG2 | up-regulates | ERBB4 | binding |
| NRG2 | up-regulates | ERBB3 | binding |
Disease & clinical
Clinical variants and AI predictions
ClinVar
134 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 114 |
| Likely benign | 9 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3436 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:139851600:TGA:T | donor_loss | 1.0000 |
| 5:139851601:GAC:G | donor_loss | 1.0000 |
| 5:139851602:A:AT | donor_loss | 1.0000 |
| 5:139851603:CCT:C | donor_gain | 1.0000 |
| 5:139851842:C:CT | acceptor_gain | 1.0000 |
| 5:139852555:ATATA:A | acceptor_gain | 1.0000 |
| 5:139852556:TATA:T | acceptor_gain | 1.0000 |
| 5:139852557:ATA:A | acceptor_gain | 1.0000 |
| 5:139852558:TA:T | acceptor_gain | 1.0000 |
| 5:139852560:C:CC | acceptor_gain | 1.0000 |
| 5:139852900:TCAC:T | donor_loss | 1.0000 |
| 5:139852901:CACAT:C | donor_loss | 1.0000 |
| 5:139852902:A:AC | donor_gain | 1.0000 |
| 5:139852902:ACAT:A | donor_gain | 1.0000 |
| 5:139852902:ACATC:A | donor_loss | 1.0000 |
| 5:139852903:C:CT | donor_gain | 1.0000 |
| 5:139852903:CA:C | donor_gain | 1.0000 |
| 5:139852903:CAT:C | donor_gain | 1.0000 |
| 5:139852903:CATC:C | donor_gain | 1.0000 |
| 5:139852903:CATCT:C | donor_gain | 1.0000 |
| 5:139853023:GTTTT:G | acceptor_gain | 1.0000 |
| 5:139853024:TTTT:T | acceptor_gain | 1.0000 |
| 5:139853025:TTT:T | acceptor_gain | 1.0000 |
| 5:139853026:TT:T | acceptor_gain | 1.0000 |
| 5:139853028:C:CC | acceptor_gain | 1.0000 |
| 5:139853031:C:CT | acceptor_gain | 1.0000 |
| 5:139853033:C:CT | acceptor_gain | 1.0000 |
| 5:139853034:A:T | acceptor_gain | 1.0000 |
| 5:139855672:TCA:T | donor_loss | 1.0000 |
| 5:139855674:A:AC | donor_gain | 1.0000 |
AlphaMissense
5493 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:139855701:A:G | C423R | 1.000 |
| 5:139855709:C:T | G420D | 1.000 |
| 5:139855710:C:G | G420R | 1.000 |
| 5:139855718:A:G | L417P | 1.000 |
| 5:139855721:A:G | L416P | 1.000 |
| 5:139855724:G:T | A415D | 1.000 |
| 5:139855730:C:T | C413Y | 1.000 |
| 5:139855731:A:G | C413R | 1.000 |
| 5:139855733:A:T | I412N | 1.000 |
| 5:139855736:C:T | G411D | 1.000 |
| 5:139855737:C:G | G411R | 1.000 |
| 5:139855742:A:T | I409N | 1.000 |
| 5:139855748:A:G | L407P | 1.000 |
| 5:139865595:A:C | C381W | 1.000 |
| 5:139865597:A:G | C381R | 1.000 |
| 5:139865623:C:G | C372S | 1.000 |
| 5:139865624:A:G | C372R | 1.000 |
| 5:139865624:A:T | C372S | 1.000 |
| 5:139871723:G:C | C370W | 1.000 |
| 5:139871724:C:G | C370S | 1.000 |
| 5:139871724:C:T | C370Y | 1.000 |
| 5:139871725:A:G | C370R | 1.000 |
| 5:139871725:A:T | C370S | 1.000 |
| 5:139871756:G:C | C359W | 1.000 |
| 5:139871757:C:G | C359S | 1.000 |
| 5:139871757:C:T | C359Y | 1.000 |
| 5:139871758:A:G | C359R | 1.000 |
| 5:139871758:A:T | C359S | 1.000 |
| 5:139871774:G:C | C353W | 1.000 |
| 5:139871775:C:G | C353S | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000013397 (5:139973057 T>C), RS1000016829 (5:139992881 C>A,G,T), RS1000022435 (5:139947282 A>G), RS1000025322 (5:140019077 A>G), RS1000059033 (5:139878941 G>A), RS1000062724 (5:140040036 T>C), RS1000065462 (5:139947001 T>G), RS1000086843 (5:139925976 A>G), RS1000090643 (5:139847570 A>G), RS1000123298 (5:139847283 C>A,G), RS1000147162 (5:139883410 C>T), RS1000173006 (5:139975506 G>A,C), RS1000182393 (5:140012093 G>C), RS1000186299 (5:139985940 G>A), RS1000204831 (5:139873952 C>T)
Disease associations
OMIM: gene MIM:603818 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| intellectual disability | Limited | Autosomal dominant |
Mondo (2): autism spectrum disorder (MONDO:0005258), intellectual disability (MONDO:0001071)
Orphanet (1): NON RARE IN EUROPE: Autism (Orphanet:106)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004953_1 | Disturbances of the gamma-frequency band of electroencephalography measures in schizophrenia | 4.000000e-06 |
| GCST005951_151 | Body mass index | 6.000000e-07 |
| GCST010396_31 | Gut microbiota (bacterial taxa, hurdle binary method) | 7.000000e-06 |
| GCST90020028_1000 | Hip circumference adjusted for BMI | 8.000000e-09 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008388 | gamma wave measurement |
| EFO:0004340 | body mass index |
| EFO:0007874 | gut microbiome measurement |
| EFO:0008039 | BMI-adjusted hip circumference |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
35 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, affects cotreatment, decreases expression | 3 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases methylation, increases methylation | 2 |
| Nickel | decreases expression | 2 |
| Tobacco Smoke Pollution | decreases expression | 2 |
| methylmercuric chloride | decreases expression | 1 |
| bisphenol A | affects methylation, affects cotreatment, increases methylation | 1 |
| terbufos | increases methylation | 1 |
| sodium arsenite | decreases expression | 1 |
| manganese chloride | increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| S-(1,2-dichlorovinyl)cysteine | decreases reaction, increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression, increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Arsenic | affects expression | 1 |
| Asbestos | affects methylation | 1 |
| Calcitriol | decreases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Estradiol | increases expression | 1 |
| Lipopolysaccharides | increases expression, decreases reaction | 1 |
| Manganese | increases expression | 1 |
| Melphalan | decreases expression | 1 |
| Parathion | increases methylation | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Silicon Dioxide | increases expression | 1 |
Cellosaurus cell lines
1 cell lines: 1 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1Z7 | Abcam HeLa NRG2 KO | Cancer cell line | Female |
Clinical trials (associated diseases)
496 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT00391261 | PHASE4 | COMPLETED | An Open-label Trial of Metformin for Weight Control of Pediatric Patients on Antipsychotic Medications. |
| NCT01028820 | PHASE4 | COMPLETED | FMRI Brain Activation of Aripiprazole Treatment in Autism Spectrum Disorders |
| NCT01333865 | PHASE4 | COMPLETED | A Study of Memantine Hydrochloride (Namenda®) for Cognitive and Behavioral Impairment in Adults With Autism Spectrum Disorders |
| NCT01337700 | PHASE4 | COMPLETED | Milnacipran in Autism and the Functional Locus Coeruleus and Noradrenergic Model of Autism |
| NCT01695200 | PHASE4 | COMPLETED | Omega-3 Fatty Acids in Autism Spectrum Disorders |
| NCT02096952 | PHASE4 | COMPLETED | Methylphenidate ER Liquid Formulation in Adults With ASD and ADHD |
| NCT02235467 | PHASE4 | COMPLETED | Multisite Study: Parental Training Using Video Modelling to Develop Social Skills in Children With Autism |
| NCT02940574 | PHASE4 | COMPLETED | Neural and Behavioral Effects of Oxytocin in Autism Spectrum Disorders |
| NCT03333629 | PHASE4 | COMPLETED | Promoting Positive Outcomes for Individuals With ASD: Linking Early Detection, Treatment, and Long-term Outcomes |
| NCT03337646 | PHASE4 | COMPLETED | Evaluation of the Effect and Safety of Lisdexamfetamine in Children Aged 6-12 With ADHD and Autism |
| NCT03538431 | PHASE4 | COMPLETED | Improving Driving in Young People With Autism Spectrum Disorders |
| NCT03757585 | PHASE4 | COMPLETED | Natural Treatments for the Management of Emotional Dysregulation in Youth With Non-verbal Learning Disability (NVLD) and/or Autism Spectrum Disorders (ASD) |
| NCT04903353 | PHASE4 | COMPLETED | Pragmatic Trial Comparing Weight Gain in Children With Autism Taking Risperidone Versus Aripiprazole |
| NCT05063656 | PHASE4 | COMPLETED | Biomarker-Driven Pharmacological Treatment of Adolescents With Autism Spectrum Disorder With Gabapentin |
| NCT05146245 | PHASE4 | UNKNOWN | Safety and Pharmacokinetics of Antipsychotics in Children 2: Studying TDM in an RCT |
| NCT05916339 | PHASE4 | RECRUITING | AWARE: Management of ADHD in Autism Spectrum Disorder |
| NCT05954052 | PHASE4 | TERMINATED | A Study of Glutathione in Children With Autism Spectrum Disorder |
| NCT06853665 | PHASE4 | RECRUITING | The TEAM Study - Treatment Efficacy for Autism/Attention Using Mixed Amphetamine |
| NCT07054697 | PHASE4 | COMPLETED | Pilot-RCT With Individualized Homeopathic Treatment in the Children With Autism Spectrum Disorder |
| NCT07161804 | PHASE4 | COMPLETED | Pilot RCT Using Homeopathic Medicines in ASD |
| NCT07439042 | PHASE4 | NOT_YET_RECRUITING | Buspirone for Anxiety in Autistic Youth |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT01302964 | PHASE3 | COMPLETED | Mirtazapine Treatment of Anxiety in Children and Adolescents With Pervasive Developmental Disorders |
| NCT01706523 | PHASE3 | TERMINATED | Open Label Extension Study of STX209 (Arbaclofen) in Autism Spectrum Disorders |
| NCT01825798 | PHASE3 | COMPLETED | Treatment of Overweight Induced by Antipsychotic Medication in Young People With Autism Spectrum Disorders (ASD) |
| NCT01972074 | PHASE3 | COMPLETED | Behavioral and Neural Response to Memantine in Adolescents With Autism Spectrum Disorder |
| NCT02985749 | PHASE3 | COMPLETED | A Study of Oxytocin for the Treatment of Social Impairment in Individuals With High Functioning Autism Spectrum Disorder |
| NCT03197922 | PHASE3 | COMPLETED | Treatment of Encopresis in Children With Autism Spectrum Disorders |
| NCT03504917 | PHASE3 | TERMINATED | A Study of Balovaptan in Adults With Autism Spectrum Disorder With a 2-Year Open-Label Extension |
| NCT03553875 | PHASE3 | TERMINATED | Memantine for the Treatment of Social Deficits in Youth With Disorders of Impaired Social Interactions |
| NCT03640156 | PHASE3 | COMPLETED | Modulating Socially Adaptive Mirror System Functioning in Autism by Oxytocin |
| NCT03715153 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children Aged From 2 to Less Than 7 Years Old With Autism Spectrum Disorder. |
| NCT03715166 | PHASE3 | TERMINATED | Efficacy and Safety of Bumetanide Oral Liquid Formulation in Children and Adolescents Aged From 7 to Less Than 18 Years Old With Autism Spectrum Disorder |
| NCT04233502 | PHASE3 | WITHDRAWN | Efficacy and Safety of Slenyto for Insomnia in Children With ASD |
| NCT04578756 | PHASE3 | COMPLETED | Open-Label, Flexible-dose Study to Evaluate the Long-Term Safety and Tolerability of Cariprazine in the Treatment of Pediatric Participants With Schizophrenia, Bipolar I Disorder, or Autism Spectrum Disorder |
| NCT04623398 | PHASE3 | COMPLETED | Effect of Lithium in Patients With Autism Spectrum Disorder and Phelan-McDermid Syndrome (SHANK3 Haploinsufficiency) |
Related Atlas pages
- Associated diseases: intellectual disability