NT5E
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Also known as CD73eNeNTCALJA
Summary
NT5E (5’-nucleotidase ecto, HGNC:8021) is a protein-coding gene on chromosome 6q14.3, encoding 5’-nucleotidase (P21589). Catalyzes the hydrolysis of nucleotide monophosphates, releasing inorganic phosphate and the corresponding nucleoside, with AMP being the preferred substrate. In precision oncology, NT5E Overexpression confers sensitivity to Cetuximab in Colorectal Cancer (CIViC Level B).
The protein encoded by this gene is a plasma membrane protein that catalyzes the conversion of extracellular nucleotides to membrane-permeable nucleosides. The encoded protein is used as a determinant of lymphocyte differentiation. Defects in this gene can lead to the calcification of joints and arteries. Two transcript variants encoding different isoforms have been found for this gene.
Source: NCBI Gene 4907 — RefSeq curated summary.
At a glance
- Gene–disease (curated): hereditary arterial and articular multiple calcification syndrome (Strong, GenCC)
- GWAS associations: 7
- Clinical variants (ClinVar): 124 total — 2 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 15
- Druggable target: yes — 7 molecules with ChEMBL bioactivity
- Precision-oncology evidence (CIViC): 1 curated variant–drug association
- MANE Select transcript:
NM_002526
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8021 |
| Approved symbol | NT5E |
| Name | 5’-nucleotidase ecto |
| Location | 6q14.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CD73, eN, eNT, CALJA |
| Ensembl gene | ENSG00000135318 |
| Ensembl biotype | protein_coding |
| OMIM | 129190 |
| Entrez | 4907 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 10 protein_coding
ENST00000257770, ENST00000369646, ENST00000369651, ENST00000416334, ENST00000437581, ENST00000880505, ENST00000880506, ENST00000880507, ENST00000954716, ENST00000954717
RefSeq mRNA: 2 — MANE Select: NM_002526
NM_001204813, NM_002526
CCDS: CCDS5002, CCDS56439
Canonical transcript exons
ENST00000257770 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000918638 | 85485235 | 85485432 |
| ENSE00000918639 | 85487335 | 85487489 |
| ENSE00000918640 | 85489494 | 85489599 |
| ENSE00000918641 | 85490508 | 85490657 |
| ENSE00000918642 | 85491977 | 85492177 |
| ENSE00001853124 | 85493841 | 85495784 |
| ENSE00002430594 | 85467060 | 85467282 |
| ENSE00002533809 | 85471237 | 85471425 |
| ENSE00003847261 | 85450083 | 85450478 |
Expression profiles
Bgee: expression breadth ubiquitous, 275 present calls, max score 97.96.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 92.3698 / max 1223.7913, expressed in 1492 samples.
FANTOM5 promoters (9 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 68803 | 71.8965 | 1448 |
| 68804 | 10.0301 | 1098 |
| 68800 | 7.5798 | 956 |
| 68801 | 1.0244 | 469 |
| 68802 | 0.5795 | 379 |
| 68799 | 0.5131 | 326 |
| 68812 | 0.4441 | 247 |
| 68813 | 0.2140 | 74 |
| 68798 | 0.0885 | 25 |
Top tissues by expression
289 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 97.96 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.04 | gold quality |
| jejunal mucosa | UBERON:0000399 | 96.12 | gold quality |
| synovial joint | UBERON:0002217 | 95.99 | gold quality |
| cartilage tissue | UBERON:0002418 | 94.82 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 94.50 | gold quality |
| endocervix | UBERON:0000458 | 94.29 | gold quality |
| tendon | UBERON:0000043 | 94.01 | gold quality |
| endometrium | UBERON:0001295 | 93.76 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 93.54 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 93.40 | gold quality |
| endometrium epithelium | UBERON:0004811 | 93.32 | gold quality |
| tibia | UBERON:0000979 | 92.85 | gold quality |
| decidua | UBERON:0002450 | 92.69 | gold quality |
| myometrium | UBERON:0001296 | 92.41 | gold quality |
| popliteal artery | UBERON:0002250 | 92.19 | gold quality |
| tibial artery | UBERON:0007610 | 92.19 | gold quality |
| rectum | UBERON:0001052 | 92.17 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 92.17 | gold quality |
| uterus | UBERON:0000995 | 92.14 | gold quality |
| aorta | UBERON:0000947 | 91.97 | gold quality |
| placenta | UBERON:0001987 | 91.88 | gold quality |
| ascending aorta | UBERON:0001496 | 91.77 | gold quality |
| thoracic aorta | UBERON:0001515 | 91.73 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 91.73 | gold quality |
| artery | UBERON:0001637 | 91.71 | gold quality |
| right coronary artery | UBERON:0001625 | 91.68 | gold quality |
| body of uterus | UBERON:0009853 | 91.68 | gold quality |
| duodenum | UBERON:0002114 | 91.58 | gold quality |
| ectocervix | UBERON:0012249 | 91.19 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-10855 | yes | 246.42 |
| E-ANND-3 | yes | 13.59 |
| E-GEOD-137537 | no | 602.75 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): CTNNB1, FOXO3, GFI1, HIF1A, HNF1A, JUN, LEF1, SP1, STAT3, TCF7, ZNF263
miRNA regulators (miRDB)
118 targeting NT5E, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-4425 | 100.00 | 67.59 | 1049 |
| HSA-MIR-4455 | 100.00 | 65.48 | 1587 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-3924 | 100.00 | 72.09 | 2394 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3163 | 100.00 | 77.23 | 8605 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-3185 | 99.99 | 68.12 | 1959 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-9718 | 99.94 | 68.91 | 918 |
| HSA-MIR-22-3P | 99.93 | 68.13 | 917 |
Literature-anchored findings (GeneRIF, showing 40)
- Review: Ecto-5’-nucleotidase in B-cell chronic lymphocytic leukemia (PMID:12000134)
- Regulation of ecto-5’-nucleotidase by TNF-alpha in human endothelial cells. (PMID:12030367)
- a critical enzyme responsible for the generation of adenosine (PMID:14578500)
- Review defines glycosylphosphatidylinositol-anchored 5’-nucleotidase as an extracellular, raft-associated enzyme responsible for conversion of extracellular adenosine triphosphate (ATP) into adenosine. (PMID:16709165)
- Expression of ecto-5’-nucleotidase in melanoma correlates with a number of metastasis-related markers and thus may have a function in this process. (PMID:16718268)
- Gliclazide inhibits the activity of lymphocyte ecto-5’-nucleotidase and decreases the concentration of adenosine at the cell surface. (PMID:16735966)
- CD73 is coexpressed with metastasis promoting antigens in human melanoma cells (PMID:17065075)
- CD73 may accelerate the growth of breast cancer by stimulating cell proliferation and tumor angiogenesis. (PMID:17487388)
- CD73 may facilitate the adhesion, migration and invasion of human breast cancer cells through its enzyme activity of generating adenosine (PMID:17671792)
- CD73 expression on central nervous system (CNS) microvasculature was confirmed with stainings of frozen tissue sections of multiple sclerosis brain samples taken at autopsy (PMID:17911479)
- eN is a novel and specific receptor for tenascin C (PMID:18062933)
- inhibition of TRAIL signaling works through interaction of CD73 with death receptor 5, as CD73 and death receptor 5 could be coimmunoprecipitated and were shown to be colocalized in the plasma membrane by confocal microscopy (PMID:18566412)
- Ecto-5’-nucleotidase/CD73 may regulate the extracellular adenosine 5’-monophosphate (AMP) and adenosine levels. (PMID:18636315)
- Data show that in varicocele patients, 5’-nucleotidase activity is decreased in seminal plasma and spermatozoa. (PMID:18787389)
- PMNs facilitate translocation across human epithelium and alter fluid homeostasis via epithelial cell-expressed NT5E. (PMID:18924612)
- CD73 plays a critical role by suppressing transendothelial leukocyte trafficking through its enzymatic activity and mitigates inflammatory and immune sequelae of cardiac transplantation via the adenosine 2B receptor. (PMID:19008478)
- CD73 expression can be modulated within minutes following exposure of HUVEC to lysophosphatidylcholine, and this response may be mediated by PKC (PMID:20476579)
- CD73 plays an important role in breast cancer growth by affecting cell cycle progression and apoptosis. (PMID:20874842)
- Studies indicate that it remains unclear whether interruption of IFNalphaA and IL-10 signaling in the absence of CD73 activity results from a deficiency of its product adenosine or an accumulation of its substrate nucleotides. (PMID:21057730)
- Abnormal expression of CD(73) in Treg cells may participate in the pathogenesis of systemic lupus erythematosus. (PMID:21092450)
- We identified mutations in NT5E in members of three families with symptomatic arterial and joint calcifications. This gene encodes CD73, which converts AMP to adenosine. (PMID:21288095)
- CD73 is expressed on a subpopulation of afferent lymph vessels but is absent on efferent lymphatics, unlike LYVE-1 and podoplanin, which are expressed on both types of lymphatics. (PMID:21346249)
- the ectonucleotidases CD39 and CD73 and ADORA2A appear as possible targets for novel treatments in ovarian cancer (PMID:21638125)
- Exosomes from diverse cancer cell types exhibit potent 5’AMP and ATP phosphohydrolytic activity, partly attributed to exosomally expressed CD73 and CD39, which contribute to extracellular adenosine production. (PMID:21677139)
- MSC migration is controlled by CD73 & CD29, which in turn are regulated by mechanical stimulation of cells (PMID:21732280)
- Sequence and structural analysis of H. influenzae NadN led to the discovery that human CD73 is capable of processing both NAD and NMN, therefore disclosing a possible novel function of human CD73 in systemic NAD metabolism. (PMID:21933152)
- CD73-generated extracellular adenosine activates type 1 purinergic A2A receptors that are constitutively expressed by chronic lymphocytic leukemia cells and that are further elevated in proliferating neoplastic cells. (PMID:21998208)
- The expression of CD73 is associated with leukemia subtype, differentiation and development. The higher differentiation of leukemia cells, the lower of CD73 expression in myeloid and B lymphoid leukemia. (PMID:22040959)
- Data show that the alterations in the CD39/CD73 adenosinergic machinery and loss of function in ADA-deficient Tregs provide insights into a predisposition to autoimmunity and the underlying mechanisms causing defective peripheral tolerance in ADA-SCID. (PMID:22184407)
- In multivariate Cox regression analysis, overexpression of CD73 was proven to be an independent prognostic biomarker for colorectal cancer. (PMID:22287455)
- deregulation of NT5E expression in melanoma occurs via epigenetic changes in the NT5E CpG island (PMID:22454080)
- Elevated CD73 expression in breast cancer can predict a good prognosis. However, the actual role of CD73 in cancerogenesis remains unclear and requires further analysis. (PMID:22553809)
- the activity of CD73 to trigger adenosine signaling sustains a chemoresistant phenotype in glioblastoma multiforme cells (PMID:22833450)
- The absence of ecto-5’NT/CD73 in the D283 cell line, a metastatic medulloblastoma phenotype, suggests that high expression levels of this ectonucleotidase could be correlated with a poor prognosis in patients with medulloblastoma. (PMID:23094051)
- Mutations in the underlying disease genes ENPP1, ABCC6, NT5E, and SLC20A2, respectively, lead to arterial media calcification. (PMID:23122642)
- Crystal structures of the dimeric human e5NT reveal an extensive conformational switch between the open and closed forms of the enzyme. (PMID:23142347)
- crystallization and preliminary X-ray crystallographic analysis of an open structural conformation of human e5NT are described. (PMID:23192044)
- Coronary vasodilation to adenine nucleotides is associated with endothelial CD73-dependent production of extracellular adenosine that acts as an endothelium-derived hyperpolarizing factor. (PMID:23288168)
- SNPs at the 5’-nucleotidase and xanthine oxidase genes influence the risk of noncirrhotic portal hypertension in HIV patients treated with didanosine. (PMID:23315321)
- Isoflurane causes TGF-beta1-dependent induction of renal tubular CD73 and adenosine generation to protect against renal ischemia and reperfusion injury. (PMID:23423261)
Cross-species orthologs
7 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | nt5e | ENSDARG00000071017 |
| mus_musculus | Nt5e | ENSMUSG00000032420 |
| rattus_norvegicus | Nt5e | ENSRNOG00000011071 |
| drosophila_melanogaster | veil | FBGN0034225 |
| drosophila_melanogaster | CG30103 | FBGN0050103 |
| drosophila_melanogaster | NT5E-2 | FBGN0050104 |
| drosophila_melanogaster | CG42249 | FBGN0259101 |
Protein
Protein identifiers
5’-nucleotidase — P21589 (reviewed: P21589)
Alternative names: 5’-deoxynucleotidase, Ecto-5’-nucleotidase, IMP-specific 5’-nucleotidase, Thymidylate 5’-phosphatase
All UniProt accessions (4): P21589, H0Y3X5, H0Y7R7, Q96B60
UniProt curated annotations — full annotation on UniProt →
Function. Catalyzes the hydrolysis of nucleotide monophosphates, releasing inorganic phosphate and the corresponding nucleoside, with AMP being the preferred substrate. Shows a preference for ribonucleotide monophosphates over their equivalent deoxyribose forms. Other substrates include IMP, UMP, GMP, CMP, dAMP, dCMP, dTMP, NAD and NMN.
Subunit / interactions. Homodimer.
Subcellular location. Cell membrane.
Disease relevance. Calcification of joints and arteries (CALJA) [MIM:211800] A condition characterized by adult-onset calcification of the lower extremity arteries, including the iliac, femoral and tibial arteries, and hand and foot capsule joints. Age of onset has been reported as early as the second decade of life, usually involving intense joint pain or calcification in the hands. The disease is caused by variants affecting the gene represented in this entry.
Activity regulation. Inhibited by adenosine 5’-(alpha,beta-methylene)-diphosphate (AMPCP).
Similarity. Belongs to the 5’-nucleotidase family.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P21589-1 | 1 | yes |
| P21589-2 | 2 |
RefSeq proteins (2): NP_001191742, NP_002517* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR004843 | Calcineurin-like_PHP | Domain |
| IPR006146 | 5’-Nucleotdase_CS | Conserved_site |
| IPR006179 | 5_nucleotidase/apyrase | Family |
| IPR008334 | 5’-Nucleotdase_C | Domain |
| IPR029052 | Metallo-depent_PP-like | Homologous_superfamily |
| IPR036907 | 5’-Nucleotdase_C_sf | Homologous_superfamily |
Pfam: PF00149, PF02872
Enzyme classification (BRENDA):
- EC 3.1.3.5 — 5’-nucleotidase (BRENDA: 107 organisms, 375 substrates, 402 inhibitors, 307 Km, 66 kcat entries)
Substrate kinetics (BRENDA)
39 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 5’-AMP | 0.0003–23 | 73 |
| 5’-IMP | 0.0071–18 | 49 |
| 5’-GMP | 0.0064–7.2 | 29 |
| 5’-UMP | 0.014–56 | 27 |
| 5’-CMP | 0.002–100 | 19 |
| INOSINE | 0.25–10.2 | 13 |
| 5’-DAMP | 0.012–35 | 9 |
| AMP | 0.0091–1.49 | 8 |
| 5’-DGMP | 0.044–142 | 7 |
| 4-NITROPHENYL PHOSPHATE | 0.224–21.78 | 6 |
| 5’-DCMP | 0.023–0.75 | 6 |
| DCMP | 0.012–0.193 | 6 |
| 5’-TMP | 0.008–0.73 | 5 |
| 5’-XMP | 0.065–2.9 | 5 |
| 5’-DTMP | 0.008–22 | 4 |
Catalyzed reactions (Rhea), 10 shown:
- dTMP + H2O = thymidine + phosphate (RHEA:11080)
- a ribonucleoside 5’-phosphate + H2O = a ribonucleoside + phosphate (RHEA:12484)
- GMP + H2O = guanosine + phosphate (RHEA:27714)
- IMP + H2O = inosine + phosphate (RHEA:27718)
- UMP + H2O = uridine + phosphate (RHEA:29359)
- dCMP + H2O = 2’-deoxycytidine + phosphate (RHEA:29363)
- CMP + H2O = cytidine + phosphate (RHEA:29367)
- dAMP + H2O = 2’-deoxyadenosine + phosphate (RHEA:29371)
- AMP + H2O = adenosine + phosphate (RHEA:29375)
- a 2’-deoxyribonucleoside 5’-phosphate + H2O = a 2’-deoxyribonucleoside + phosphate (RHEA:36167)
UniProt features (96 total): strand 31, helix 22, binding site 20, turn 5, glycosylation site 4, disulfide bond 4, sequence variant 3, site 2, signal peptide 1, chain 1, propeptide 1, lipid moiety-binding region 1, splice variant 1
Structure
Experimental structures (PDB)
51 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6TVE | X-RAY DIFFRACTION | 1.05 |
| 9HJ4 | X-RAY DIFFRACTION | 1.06 |
| 7PBY | X-RAY DIFFRACTION | 1.13 |
| 7PB5 | X-RAY DIFFRACTION | 1.28 |
| 7PCP | X-RAY DIFFRACTION | 1.38 |
| 7PD9 | X-RAY DIFFRACTION | 1.39 |
| 7P9R | X-RAY DIFFRACTION | 1.41 |
| 7PBA | X-RAY DIFFRACTION | 1.42 |
| 7PA4 | X-RAY DIFFRACTION | 1.45 |
| 7PBB | X-RAY DIFFRACTION | 1.47 |
| 6TVG | X-RAY DIFFRACTION | 1.48 |
| 7QGA | X-RAY DIFFRACTION | 1.5 |
| 7QGL | X-RAY DIFFRACTION | 1.5 |
| 4H2G | X-RAY DIFFRACTION | 1.55 |
| 7P9N | X-RAY DIFFRACTION | 1.55 |
| 4H1Y | X-RAY DIFFRACTION | 1.58 |
| 4H2B | X-RAY DIFFRACTION | 1.7 |
| 7P9T | X-RAY DIFFRACTION | 1.79 |
| 4H2F | X-RAY DIFFRACTION | 1.85 |
| 6S7H | X-RAY DIFFRACTION | 1.85 |
| 6Z9D | X-RAY DIFFRACTION | 1.9 |
| 6XUE | X-RAY DIFFRACTION | 1.94 |
| 6XUQ | X-RAY DIFFRACTION | 1.97 |
| 4H2I | X-RAY DIFFRACTION | 2 |
| 6TWA | X-RAY DIFFRACTION | 2 |
| 6S7F | X-RAY DIFFRACTION | 2.05 |
| 6XUG | X-RAY DIFFRACTION | 2.09 |
| 6Z9B | X-RAY DIFFRACTION | 2.17 |
| 4H1S | X-RAY DIFFRACTION | 2.2 |
| 7QGO | X-RAY DIFFRACTION | 2.21 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P21589-F1 | 91.95 | 0.86 |
Antibody-complex structures (SAbDab): 5 — 6HXW, 6VC9, 6VCA, 7BBJ, 8ZNZ
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 118 (transition state stabilizer); 121 (transition state stabilizer)
Ligand- & substrate-binding residues (20): 243; 354; 354; 390; 390; 395; 395; 417; 417; 500; 500; 506 …
Post-translational modifications (1): 549
Disulfide bonds (4): 51–57, 353–358, 365–387, 476–479
Glycosylation sites (4): 53, 311, 333, 403
Function
Pathways and Gene Ontology
Reactome pathways
14 pathways
| ID | Pathway |
|---|---|
| R-HSA-196807 | Nicotinate metabolism |
| R-HSA-73621 | Pyrimidine catabolism |
| R-HSA-74259 | Purine catabolism |
| R-HSA-9660826 | Purinergic signaling in leishmaniasis infection |
| R-HSA-1430728 | Metabolism |
| R-HSA-15869 | Metabolism of nucleotides |
| R-HSA-1643685 | Disease |
| R-HSA-196849 | Metabolism of water-soluble vitamins and cofactors |
| R-HSA-196854 | Metabolism of vitamins and cofactors |
| R-HSA-5663205 | Infectious disease |
| R-HSA-8956319 | Nucleotide catabolism |
| R-HSA-9658195 | Leishmania infection |
| R-HSA-9664424 | Cell recruitment (pro-inflammatory response) |
| R-HSA-9824443 | Parasitic Infection Pathways |
MSigDB gene sets: 442 (showing top):
VERHAAK_AML_WITH_NPM1_MUTATED_DN, BEGUM_TARGETS_OF_PAX3_FOXO1_FUSION_UP, TSUNODA_CISPLATIN_RESISTANCE_UP, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_NUCLEOSIDE_DIPHOSPHATE_METABOLIC_PROCESS, YAGI_AML_WITH_INV_16_TRANSLOCATION, GOBP_INFLAMMATORY_RESPONSE, REACTOME_PYRIMIDINE_CATABOLISM, AAGTCCA_MIR422B_MIR422A, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, GOCC_CELL_SURFACE, LINDGREN_BLADDER_CANCER_CLUSTER_3_DN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS
GO Biological Process (11): AMP catabolic process (GO:0006196), DNA metabolic process (GO:0006259), leukocyte cell-cell adhesion (GO:0007159), response to ATP (GO:0033198), ADP catabolic process (GO:0046032), ATP metabolic process (GO:0046034), adenosine biosynthetic process (GO:0046086), negative regulation of inflammatory response (GO:0050728), calcium ion homeostasis (GO:0055074), inhibition of non-skeletal tissue mineralization (GO:0140928), nucleotide catabolic process (GO:0009166)
GO Molecular Function (9): nucleotide binding (GO:0000166), 5’-deoxynucleotidase activity (GO:0002953), 5’-nucleotidase activity (GO:0008253), zinc ion binding (GO:0008270), identical protein binding (GO:0042802), protein binding (GO:0005515), hydrolase activity (GO:0016787), hydrolase activity, acting on ester bonds (GO:0016788), metal ion binding (GO:0046872)
GO Cellular Component (8): nucleoplasm (GO:0005654), cytosol (GO:0005829), plasma membrane (GO:0005886), external side of plasma membrane (GO:0009897), cell surface (GO:0009986), membrane (GO:0016020), extracellular exosome (GO:0070062), side of membrane (GO:0098552)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Nucleotide catabolism | 2 |
| Metabolism | 2 |
| Metabolism of water-soluble vitamins and cofactors | 1 |
| Cell recruitment (pro-inflammatory response) | 1 |
| Metabolism of vitamins and cofactors | 1 |
| Disease | 1 |
| Metabolism of nucleotides | 1 |
| Parasitic Infection Pathways | 1 |
| Leishmania infection | 1 |
| Infectious disease | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| purine ribonucleotide catabolic process | 2 |
| membrane | 2 |
| purine ribonucleoside monophosphate catabolic process | 1 |
| AMP metabolic process | 1 |
| nucleic acid metabolic process | 1 |
| cell-cell adhesion | 1 |
| response to purine-containing compound | 1 |
| response to organophosphorus | 1 |
| response to oxygen-containing compound | 1 |
| purine ribonucleoside diphosphate catabolic process | 1 |
| ADP metabolic process | 1 |
| purine ribonucleotide metabolic process | 1 |
| purine ribonucleoside triphosphate metabolic process | 1 |
| adenosine metabolic process | 1 |
| purine ribonucleoside biosynthetic process | 1 |
| inflammatory response | 1 |
| negative regulation of defense response | 1 |
| negative regulation of response to external stimulus | 1 |
| regulation of inflammatory response | 1 |
| monoatomic cation homeostasis | 1 |
| inorganic ion homeostasis | 1 |
| tissue homeostasis | 1 |
| nucleotide metabolic process | 1 |
| nucleoside phosphate catabolic process | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| 5’-nucleotidase activity | 1 |
| nucleotidase activity | 1 |
| transition metal ion binding | 1 |
| protein binding | 1 |
| binding | 1 |
| catalytic activity | 1 |
| hydrolase activity | 1 |
| cation binding | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| cell periphery | 1 |
| plasma membrane | 1 |
| cell surface | 1 |
Protein interactions and networks
STRING
4140 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NT5E | ENTPD1 | P49961 | 998 |
| NT5E | ENG | P17813 | 923 |
| NT5E | THY1 | P04216 | 919 |
| NT5E | CD34 | P28906 | 905 |
| NT5E | PTPRC | P08575 | 892 |
| NT5E | ITGB1 | P05556 | 889 |
| NT5E | CD44 | P16070 | 889 |
| NT5E | ENPP1 | P22413 | 880 |
| NT5E | ADORA2A | P29274 | 869 |
| NT5E | ALCAM | Q13740 | 854 |
| NT5E | PECAM1 | P16284 | 824 |
| NT5E | CD19 | P15391 | 816 |
| NT5E | ITGAM | P11215 | 792 |
| NT5E | MCAM | P43121 | 778 |
| NT5E | ANPEP | P15144 | 756 |
IntAct
41 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| CAMKV | AP3B1 | psi-mi:“MI:0914”(association) | 0.640 |
| NT5E | RNF24 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NT5E | ZNRF4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NT5E | SCAMP1 | psi-mi:“MI:0914”(association) | 0.530 |
| TNFSF8 | LGALS8 | psi-mi:“MI:0914”(association) | 0.530 |
| CFTR | PLEKHG3 | psi-mi:“MI:0914”(association) | 0.480 |
| RAB11A | LANCL1 | psi-mi:“MI:2364”(proximity) | 0.420 |
| NT5E | ARG2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ESR1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| DDR1 | psi-mi:“MI:0914”(association) | 0.350 | |
| TEX101 | NDUFA4 | psi-mi:“MI:0914”(association) | 0.350 |
| TEX101 | ITGB1 | psi-mi:“MI:0914”(association) | 0.350 |
| CD81 | STX3 | psi-mi:“MI:0914”(association) | 0.350 |
| CD81 | PVR | psi-mi:“MI:0914”(association) | 0.350 |
| CD81 | CD276 | psi-mi:“MI:0914”(association) | 0.350 |
| VPS35 | psi-mi:“MI:0914”(association) | 0.350 | |
| ZBTB18 | DNASE1L1 | psi-mi:“MI:0914”(association) | 0.350 |
| BMI1 | MEIS3P1 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM106A | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| NT5E | SCAMP3 | psi-mi:“MI:0914”(association) | 0.350 |
| TMEM106A | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (158): XPO7 (Affinity Capture-MS), CHD1L (Affinity Capture-MS), FLVCR1 (Affinity Capture-MS), ATR (Affinity Capture-MS), RPTOR (Affinity Capture-MS), GLMN (Affinity Capture-MS), RDH13 (Affinity Capture-MS), SCAMP1 (Affinity Capture-MS), USP22 (Affinity Capture-MS), HSDL1 (Affinity Capture-MS), RFC2 (Affinity Capture-MS), RAB9A (Affinity Capture-MS), DNAAF5 (Affinity Capture-MS), MTOR (Affinity Capture-MS), GHITM (Affinity Capture-MS)
ESM2 similar proteins: A0A2I4HXH5, A5D6U8, B3A0N5, B6EWW8, E0D877, F8S0Z7, O00462, O35409, P05089, P15693, P19492, P21588, P21589, P29240, P31422, P42263, P49614, P49900, P50635, P52307, P70627, P83456, P83852, Q05927, Q14832, Q1ZZH1, Q29444, Q2KJ64, Q4FZV0, Q561R9, Q5R979, Q5RAL3, Q5RFI5, Q5TVM9, Q5XGR8, Q61503, Q641Z7, Q6AYS4, Q6PCE3, Q8CAA7
Diamond homologs: A0A2I4HXH5, B3A0N5, B6EWW8, E0D877, F8S0Z7, O34313, O83142, P21588, P21589, P29240, P44569, P50635, P52307, Q05927, Q5TVM9, Q61503, Q95P65, Q9XZ43, W8EFS0, P07778, P0DJJ5, A9BJC1, P08331, P22848, P26265, P44764, P53052, Q8DFG4
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| HIF1A | “up-regulates quantity by expression” | NT5E | “transcriptional regulation” |
| TTK | “up-regulates activity” | NT5E | phosphorylation |
| NT5E | “up-regulates quantity” | adenosine | “chemical modification” |
| NT5E | “down-regulates quantity” | AMP | “chemical modification” |
Disease & clinical
Cancer significance
Clinical variants and AI predictions
ClinVar
124 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 2 |
| Uncertain significance | 88 |
| Likely benign | 16 |
| Benign | 9 |
Top pathogenic / likely-pathogenic (4)
| Variant ID | HGVS | Classification |
|---|---|---|
| 29687 | NM_002526.4(NT5E):c.662C>A (p.Ser221Ter) | Pathogenic |
| 29688 | NM_002526.4(NT5E):c.1073G>A (p.Cys358Tyr) | Pathogenic |
| 2633543 | NM_002526.4(NT5E):c.1428C>A (p.Cys476Ter) | Likely pathogenic |
| 29689 | NM_002526.4(NT5E):c.1608dup (p.Val537fs) | Likely pathogenic |
SpliceAI
1242 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:85450477:TGG:T | donor_loss | 1.0000 |
| 6:85450479:G:GA | donor_loss | 1.0000 |
| 6:85450480:T:G | donor_loss | 1.0000 |
| 6:85467055:TCTAG:T | acceptor_loss | 1.0000 |
| 6:85467057:TAG:T | acceptor_loss | 1.0000 |
| 6:85467058:A:AG | acceptor_gain | 1.0000 |
| 6:85467058:AG:A | acceptor_gain | 1.0000 |
| 6:85467059:G:GG | acceptor_gain | 1.0000 |
| 6:85467059:GG:G | acceptor_gain | 1.0000 |
| 6:85467059:GGCAC:G | acceptor_gain | 1.0000 |
| 6:85471235:A:AG | acceptor_gain | 1.0000 |
| 6:85471235:AG:A | acceptor_gain | 1.0000 |
| 6:85471235:AGG:A | acceptor_gain | 1.0000 |
| 6:85471236:G:A | acceptor_loss | 1.0000 |
| 6:85471236:G:GC | acceptor_gain | 1.0000 |
| 6:85471236:GG:G | acceptor_gain | 1.0000 |
| 6:85471236:GGG:G | acceptor_gain | 1.0000 |
| 6:85471236:GGGA:G | acceptor_gain | 1.0000 |
| 6:85471236:GGGAC:G | acceptor_gain | 1.0000 |
| 6:85471421:CACAG:C | donor_loss | 1.0000 |
| 6:85471422:ACAG:A | donor_loss | 1.0000 |
| 6:85471424:AG:A | donor_loss | 1.0000 |
| 6:85471425:GG:G | donor_loss | 1.0000 |
| 6:85471427:T:A | donor_loss | 1.0000 |
| 6:85485233:A:AG | acceptor_gain | 1.0000 |
| 6:85485234:G:GG | acceptor_gain | 1.0000 |
| 6:85485234:GGC:G | acceptor_gain | 1.0000 |
| 6:85485234:GGCA:G | acceptor_gain | 1.0000 |
| 6:85485428:TGAAG:T | donor_gain | 1.0000 |
| 6:85485429:GAAG:G | donor_gain | 1.0000 |
AlphaMissense
3759 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:85450393:A:T | D85V | 0.999 |
| 6:85450246:A:T | D36V | 0.998 |
| 6:85450393:A:C | D85A | 0.998 |
| 6:85450416:T:C | F93L | 0.998 |
| 6:85450418:C:A | F93L | 0.998 |
| 6:85450418:C:G | F93L | 0.998 |
| 6:85450246:A:C | D36A | 0.997 |
| 6:85467071:T:A | N117K | 0.997 |
| 6:85467071:T:G | N117K | 0.997 |
| 6:85467072:C:G | H118D | 0.997 |
| 6:85467074:T:A | H118Q | 0.997 |
| 6:85467074:T:G | H118Q | 0.997 |
| 6:85487473:T:C | L363P | 0.997 |
| 6:85487484:G:C | A367P | 0.997 |
| 6:85450244:C:A | N35K | 0.996 |
| 6:85450244:C:G | N35K | 0.996 |
| 6:85450247:C:A | D36E | 0.996 |
| 6:85450247:C:G | D36E | 0.996 |
| 6:85450258:G:C | R40P | 0.996 |
| 6:85450393:A:G | D85G | 0.996 |
| 6:85450394:C:A | D85E | 0.996 |
| 6:85450394:C:G | D85E | 0.996 |
| 6:85450404:G:C | G89R | 0.996 |
| 6:85467067:G:T | G116V | 0.996 |
| 6:85467073:A:C | H118P | 0.996 |
| 6:85467141:A:C | S141R | 0.996 |
| 6:85467143:T:A | S141R | 0.996 |
| 6:85467143:T:G | S141R | 0.996 |
| 6:85490609:A:C | S438R | 0.996 |
| 6:85490611:C:A | S438R | 0.996 |
dbSNP variants (sampled 300 via entrez): RS1000056641 (6:85450378 T>G), RS1000059895 (6:85457009 G>T), RS1000169347 (6:85450697 G>A,T), RS1000219742 (6:85463740 G>A), RS1000233406 (6:85474185 T>G), RS1000241264 (6:85456811 G>A,T), RS1000356592 (6:85463385 A>C,G), RS1000424526 (6:85470527 T>C), RS1000498416 (6:85488070 G>C), RS1000528088 (6:85457068 T>C), RS1000653286 (6:85494886 A>G), RS1000697924 (6:85468471 T>C), RS1000702311 (6:85494534 C>T), RS1000902664 (6:85468485 G>A,T), RS1000916528 (6:85475636 G>A)
Disease associations
OMIM: gene MIM:129190 | disease phenotypes: MIM:211800
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| hereditary arterial and articular multiple calcification syndrome | Strong | Autosomal recessive |
Mondo (2): hereditary arterial and articular multiple calcification syndrome (MONDO:0008895), intellectual disability (MONDO:0001071)
Orphanet (2): Hereditary arterial and articular multiple calcification syndrome (Orphanet:289601), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)
HPO phenotypes
15 total (15 of 15 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0001717 | Coronary artery calcification |
| HP:0003207 | Arterial calcification |
| HP:0004417 | Intermittent claudication |
| HP:0005116 | Arterial tortuosity |
| HP:0005645 | Intervertebral disk calcification |
| HP:0011025 | Abnormal cardiovascular system physiology |
| HP:0011986 | Ectopic ossification |
| HP:0012101 | Decreased serum creatinine |
| HP:0025015 | Abnormal vascular morphology |
| HP:0025324 | Arterial occlusion |
| HP:0025477 | Periarticular calcification |
| HP:0031303 | Femoral arterial calcification |
| HP:0031304 | Iliac arterial calcification |
| HP:0031305 | Tibial arterial calcification |
GWAS associations
7 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001217_27 | Metabolic traits | 7.000000e-13 |
| GCST006993_8 | Hippocampal volume in Alzheimer’s disease dementia | 8.000000e-07 |
| GCST010057_4 | Lung function | 2.000000e-06 |
| GCST012020_117 | Serum metabolite levels | 9.000000e-15 |
| GCST012020_118 | Serum metabolite levels | 9.000000e-14 |
| GCST012020_119 | Serum metabolite levels | 6.000000e-13 |
| GCST012020_7 | Serum metabolite levels | 5.000000e-11 |
EFO canonical traits (3, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004725 | metabolite measurement |
| EFO:0005035 | hippocampal volume |
| EFO:0004312 | vital capacity |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D008607 | Intellectual Disability | C10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539 |
| C565891 | Calcification of Joints and Arteries (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5957 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
7 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 220,396 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1568 | FLUDARABINE | 3 | 101,629 |
| CHEMBL50 | QUERCETIN | 3 | 74,559 |
| CHEMBL2105120 | FTIVAZIDE | 2 | 118 |
| CHEMBL4471306 | QUEMLICLUSTAT | 2 | 490 |
| CHEMBL6246 | ELLAGIC ACID | 2 | 23,148 |
| CHEMBL269277 | BETULINIC ACID | 1 | 20,430 |
| CHEMBL4792487 | LY-3475070 | 1 | 22 |
Clinical evidence (CIViC)
Drug × variant × indication: 1 predictive associations from 1 curated evidence items.
| Variant | Therapy | Indication | Effect | Level | CIViC |
|---|---|---|---|---|---|
| NT5E Overexpression | Cetuximab | Colorectal Cancer | Sensitivity/Response | CIViC B | EID730 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs9450278 | NT5E | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Adenosine turnover
Most potent curated ligand interactions (10 total), top 10:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| oleclumab | Binding | 11.38 | pKd |
| quemliclustat | Inhibition | 11.3 | pKi |
| dalutrafusp alfa | Binding | 10.16 | pKd |
| compound 49 [PMID: 36529947] | Inhibition | 9.77 | pIC50 |
| αβ-methyleneADP | Inhibition | 8.7 | pIC50 |
| compound 15 [PMID: 32045236] | Inhibition | 8.44 | pKi |
| mupadolimab | Inhibition | 8.15 | pKd |
| ORIC-533 | Inhibition | 8.0 | pIC50 |
| quercetin | Inhibition | 7.34 | pKi |
| PSB-0963 | Inhibition | 6.82 | pKi |
Binding affinities (BindingDB)
35 measured of 70 human assays (147 total across all organisms); most potent 35 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-3-(4-phenylmethoxyphenyl)-2-(tetrazolidin-5-yl)propanoic acid | IC50 | 29 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| 2-[[(2R,3R,4S,5R)-5-(6-amino-2-chloropurin-9-yl)-4-fluoro-3-hydroxyoxolan-2-yl]methoxy]-2-[[4-(3,5-dimethyl-1H-pyrazol-4-yl)phenyl]methyl]propanedioic acid | IC50 | 34 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| 2-[[(2R,3R,4S,5R)-5-(6-amino-2-chloropurin-9-yl)-4-fluoro-3-hydroxyoxolan-2-yl]methoxy]-2-[[4-(5-methyl-1H-pyrazol-4-yl)phenyl]methyl]propanedioic acid | IC50 | 48 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| 2-[4-[2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-carboxy-2-(tetrazolidin-5-yl)ethyl]phenyl]benzoic acid | IC50 | 53 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| [[(2R,4S,5R)-5-[6-[[2-(1-adamantyl)acetyl]amino]-2-chloropurin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | IC50 | 55 nM | US-20230295213: CD73 INHIBITORS AND PHARMACEUTICAL USES THEREOF |
| [[(2R,4S,5R)-5-[2-chloro-6-[2-oxo-2-[[(1R,4R)-1,7,7-trimethyl-2-bicyclo[2.2.1]heptanyl]oxy]ethyl]purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | IC50 | 55 nM | US-20230295213: CD73 INHIBITORS AND PHARMACEUTICAL USES THEREOF |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-(2H-tetrazol-5-yl)-3-[3-(trifluoromethoxy)phenyl]propanoic acid | IC50 | 118 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| (E)-N’-(1-(3-(4-fluorophenyl)-5-phenyl-4,5-dihydro-1H-pyrazol-1yl)ethylidene)isonicotino hydrazide (3j) | IC50 | 190 nM | |
| (E)-N’-(Pyridin-3’-ylmethylene)isonicotinohydrazide (3i) | IC50 | 210 nM | |
| US10472364, Compound 54 | IC50 | 220 nM | US-10472364: Ectonucleotidase inhibitors and methods of use thereof |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-(tetrazolidin-5-yl)-3-thiophen-3-ylpropanoic acid | IC50 | 227 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| (E)-N’-(4’-Bromobenzylidene)isonicotinohydrazide (3b) | IC50 | 230 nM | |
| 5-(5,7-dimethyl-6-oxo-imidazo[4,5-c]pyridazin-3-yl)-1H-pyrimidine-2,4-dione | IC50 | 254 nM | US-20260001884: Heterocycle compounds for the treatment of cancer |
| 5-(5-isopropyl-7-methyl-6-oxo-imidazo[4.5-]pyridazin-3-yl)-1H-pyrimidine-2,4-dione | IC50 | 267 nM | US-20260001884: Heterocycle compounds for the treatment of cancer |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-(2H-tetrazol-5-yl)-3-[4-(trifluoromethoxy)phenyl]propanoic acid | IC50 | 273 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-(tetrazolidin-5-yl)-3-[4-(trifluoromethyl)phenyl]propanoic acid | IC50 | 300 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| 4-[2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-carboxy-2-(2H-tetrazol-5-yl)ethyl]thiophene-2-carboxylic acid | IC50 | 386 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| US10472364, Compound 53 | IC50 | 448 nM | US-10472364: Ectonucleotidase inhibitors and methods of use thereof |
| 5-(5-methyl-6-oxo-7H-imidazo[4,5-c]pyridazin-3-yl)-1H-pyrimidine-2,4-dione | IC50 | 622 nM | US-20260001884: Heterocycle compounds for the treatment of cancer |
| (E)-N’-(4’-Hydroxy-3-methoxybenzylidene)isonicotinohydrazide (3g) | IC50 | 680 nM | |
| US10472364, Compound 64 | IC50 | 860 nM | US-10472364: Ectonucleotidase inhibitors and methods of use thereof |
| CHEMBL5403535 | IC50 | 860 nM | |
| US10472364, Compound 43 | IC50 | 1040 nM | US-10472364: Ectonucleotidase inhibitors and methods of use thereof |
| 2-[[(2R,3R,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-3-phenyl-2-(2H-tetrazol-5-yl)propanoic acid | IC50 | 1110 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-3-pyridin-3-yl-2-(2H-tetrazol-5-yl)propanoic acid | IC50 | 1180 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| (E)-N’-(2’-hydroxybenzylidene)isonicotinohydrazide (3e) | IC50 | 1340 nM | |
| (E)-N’-(4’-Chlorobenzylidene)isonicotinohydrazide (3a) | IC50 | 1670 nM | |
| (E)-N’-(3’-Nitrobenzylidene)isonicotinohydrazide (3f) | IC50 | 1900 nM | |
| US10472364, Compound 50 | IC50 | 1910 nM | US-10472364: Ectonucleotidase inhibitors and methods of use thereof |
| (E)-N’-(Pyridin-4’-ylmethylene)isonicotinohydrazide (3h) | IC50 | 2120 nM | |
| 4-[2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-carboxy-2-(2H-tetrazol-5-yl)ethyl]benzoic acid | IC50 | 2430 nM | US-10570167: Ectonucleotidase inhibitors and methods of use thereof |
| CHEMBL5415729 | IC50 | 4800 nM | |
| (E)-N’-(4’-Fluorobenzylidene)isonicotinohydrazide (3c) | IC50 | 6760 nM | |
| (E)-N’-(4’-Methoxybenzylidene)isonicotinohydrazide (3d) | IC50 | 13800 nM | |
| CHEMBL5428963 | IC50 | 19000 nM |
ChEMBL bioactivities
1448 potent at pChembl≥5 of 1520 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 11.00 | IC50 | 0.01 | nM | CHEMBL4761506 |
| 10.96 | IC50 | 0.011 | nM | QUEMLICLUSTAT |
| 10.89 | IC50 | 0.013 | nM | CHEMBL5431118 |
| 10.70 | IC50 | 0.02 | nM | CHEMBL6162112 |
| 10.70 | IC50 | 0.02 | nM | CHEMBL6152291 |
| 10.68 | IC50 | 0.021 | nM | CHEMBL4761506 |
| 10.57 | IC50 | 0.027 | nM | CHEMBL4749428 |
| 10.55 | IC50 | 0.028 | nM | CHEMBL4776758 |
| 10.51 | IC50 | 0.031 | nM | CHEMBL4746184 |
| 10.51 | IC50 | 0.031 | nM | CHEMBL4740465 |
| 10.49 | IC50 | 0.032 | nM | CHEMBL4797225 |
| 10.42 | Ki | 0.038 | nM | CHEMBL5423436 |
| 10.40 | IC50 | 0.04 | nM | CHEMBL6150713 |
| 10.40 | IC50 | 0.04 | nM | CHEMBL6160794 |
| 10.40 | IC50 | 0.04 | nM | CHEMBL6167368 |
| 10.39 | IC50 | 0.041 | nM | QUEMLICLUSTAT |
| 10.37 | IC50 | 0.043 | nM | QUEMLICLUSTAT |
| 10.35 | IC50 | 0.045 | nM | CHEMBL4743437 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL5431118 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL6035583 |
| 10.30 | IC50 | 0.05 | nM | CHEMBL6170363 |
| 10.29 | IC50 | 0.051 | nM | CHEMBL5431118 |
| 10.28 | IC50 | 0.052 | nM | CHEMBL4790144 |
| 10.28 | IC50 | 0.053 | nM | CHEMBL4743437 |
| 10.24 | IC50 | 0.058 | nM | CHEMBL4745002 |
| 10.22 | IC50 | 0.06 | nM | CHEMBL6026050 |
| 10.15 | IC50 | 0.07 | nM | CHEMBL4784155 |
| 10.13 | IC50 | 0.074 | nM | CHEMBL5984330 |
| 10.10 | IC50 | 0.08 | nM | CHEMBL6062089 |
| 10.02 | IC50 | 0.095 | nM | CHEMBL4777161 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL5404625 |
| 10.00 | IC50 | 0.1 | nM | CHEMBL5423436 |
| 9.96 | Ki | 0.11 | nM | CHEMBL5423436 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL5899531 |
| 9.96 | IC50 | 0.11 | nM | CHEMBL5929751 |
| 9.94 | IC50 | 0.115 | nM | CHEMBL4761506 |
| 9.92 | IC50 | 0.12 | nM | CHEMBL4753354 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL5827587 |
| 9.89 | IC50 | 0.13 | nM | CHEMBL5786397 |
| 9.85 | IC50 | 0.14 | nM | CHEMBL5923677 |
| 9.82 | IC50 | 0.15 | nM | CHEMBL4763896 |
| 9.82 | IC50 | 0.15 | nM | CHEMBL4758486 |
| 9.82 | IC50 | 0.15 | nM | CHEMBL5423436 |
| 9.82 | IC50 | 0.15 | nM | CHEMBL5809627 |
| 9.80 | IC50 | 0.16 | nM | CHEMBL5844303 |
| 9.77 | IC50 | 0.17 | nM | CHEMBL5423436 |
| 9.74 | IC50 | 0.18 | nM | CHEMBL5423436 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL4744502 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL5398484 |
| 9.70 | IC50 | 0.2 | nM | CHEMBL5828700 |
PubChem BioAssay actives
544 with measured affinity, of 851 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1S)-1-(2-fluorophenyl)ethyl]amino]pyrazolo[5,4-b]pyridin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1605331: Inhibition of human CD73 | ki | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1S)-1-(3-fluorophenyl)ethyl]amino]pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1S)-1-phenylethyl]amino]pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-4-[[(1S)-1-(4-fluorophenyl)ethyl]amino]pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1S)-1-(4-fluorophenyl)ethyl]amino]pyrazolo[5,4-b]pyridin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674272: Inhibition of CD73 in human CD8-positive T cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 2.5 hrs by PiColorLock gold reagent based colorimetric assay | ic50 | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-4-[[(1S)-1-(2-fluorophenyl)ethyl]amino]pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-4-[[(1S)-1-(3-fluorophenyl)ethyl]amino]pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | <0.0001 | uM |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3-ethynyl-3,4-dihydroxyoxolan-2-yl]methoxy]-2-[[4-(2-oxo-1,3-diazinan-1-yl)phenyl]methyl]propanedioic acid | 1964441: Competitive inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells assessed as inhibition constant incubated for 1 hr by malachite green based spectrophotometer assay | ki | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1R)-1-(2-fluorophenyl)ethyl]amino]pyrazolo[5,4-b]pyridin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 2007820: Binding affinity to C-terminal His6-tagged human recombinant CD73 in HEK293 cells assessed as inhibition constant | ki | <0.0001 | uM |
| [(2R,3S,4R,5R)-5-[5-chloro-7-[[(1S)-1-(2-fluorophenyl)ethyl]amino]imidazo[4,5-b]pyridin-3-yl]-3,4-dihydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate | 2132855: Binding affinity to human recombinant CD73 assessed as inhibition constant | ki | <0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1R)-1-phenylethyl]amino]pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[4-(benzylamino)-6-chloropyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1S)-1-(2-fluorophenyl)ethyl]amino]pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0001 | uM |
| [[(2R,3R,4S,5R)-5-[2-chloro-6-[cyclopentyl(methyl)amino]purin-9-yl]-4-fluoro-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1S)-1-(4-fluorophenyl)ethyl]amino]pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-6-[cyclopentyl(methyl)amino]purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0001 | uM |
| [[(2R,3R,4S,5R)-5-[6-chloro-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-4-fluoro-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0001 | uM |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3-ethynyl-3,4-dihydroxyoxolan-2-yl]methoxy]-2-[[4-(2-oxo-1H-pyridin-3-yl)phenyl]methyl]propanedioic acid | 1964387: Inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells incubated for 1 hr by malachite green based spectrophotometer assay | ic50 | 0.0001 | uM |
| [(2R,3S,4R,5R)-5-(6-chloro-4-spiro[1,2-dihydroindene-3,3’-azetidine]-1’-ylpyrazolo[5,4-d]pyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxymethylphosphonic acid | 2007821: Inhibition of human CD73 | ic50 | 0.0001 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-6-(cyclopentylamino)purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0002 | uM |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3-ethynyl-3,4-dihydroxyoxolan-2-yl]methoxy]-2-[[4-(2-carboxyphenyl)phenyl]methyl]propanedioic acid | 1964387: Inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells incubated for 1 hr by malachite green based spectrophotometer assay | ic50 | 0.0002 | uM |
| [(2R)-2-[[(2R,3S,4R,5R)-5-[6-chloro-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy]-1-hydroxy-3-methoxypropan-2-yl]phosphonic acid | 1724305: Inhibition of CD73 in human CD8+ T-cells assessed as reduction in AMP-induced ADO expression preincubated for 15 mins followed by AMP addition and measured after 1 hr by LC-MS/MS analysis | ec50 | 0.0002 | uM |
| [[(2R,3S,4R,5R)-5-[6-(benzylamino)-2-chloropurin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0003 | uM |
| 2-benzyl-2-[[(2R,3S,4R,5R)-5-(2-chloro-6-thiophen-2-ylpurin-9-yl)-3-ethynyl-3,4-dihydroxyoxolan-2-yl]methoxy]propanedioic acid | 1964387: Inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells incubated for 1 hr by malachite green based spectrophotometer assay | ic50 | 0.0003 | uM |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3-ethynyl-3,4-dihydroxyoxolan-2-yl]methoxy]-2-[[4-(2-oxopiperidin-1-yl)phenyl]methyl]propanedioic acid | 1964387: Inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells incubated for 1 hr by malachite green based spectrophotometer assay | ic50 | 0.0003 | uM |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3-ethynyl-3,4-dihydroxyoxolan-2-yl]methoxy]-2-[(4-phenylphenyl)methyl]propanedioic acid | 1964387: Inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells incubated for 1 hr by malachite green based spectrophotometer assay | ic50 | 0.0003 | uM |
| [[(2R,3S,4R,5R)-5-[6-[benzyl(methyl)amino]-2-chloropurin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1605331: Inhibition of human CD73 | ki | 0.0003 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-6-[[(1S)-1-phenylethyl]amino]purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0003 | uM |
| [(2R,3S,4R,5R)-5-[2-chloro-6-[(2-fluorophenyl)methyl-methylamino]purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate | 2132855: Binding affinity to human recombinant CD73 assessed as inhibition constant | ki | 0.0003 | uM |
| [[(2R,3R,4S,5R)-5-[2-chloro-6-(cyclopentylamino)purin-9-yl]-4-fluoro-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0004 | uM |
| [(2R,3S,4R,5R)-5-[6-(benzylamino)-2-chloropurin-9-yl]-3,4-dihydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate | 1744449: Inhibition of human CD73 expressed in CHO cells incubated for 60 mins before addition of AMP and further incubated for 60 mins by colorimetric assay | ic50 | 0.0004 | uM |
| bis(N,N-diethylethanamine);[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[(4Z)-4-[(4-iodophenyl)methoxyimino]-3-methyl-2-oxopyrimidin-1-yl]oxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1819263: Inhibition of human soluble CD73 assessed as inhibition constant | ki | 0.0004 | uM |
| [[(2R,3S,4R,5R)-5-[(4Z)-4-[(4-bromophenyl)methoxyimino]-3-methyl-2-oxopyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid;bis(N,N-diethylethanamine) | 1819263: Inhibition of human soluble CD73 assessed as inhibition constant | ki | 0.0004 | uM |
| 2-[[(2R,3S,4R,5R)-5-(6-amino-2-chloropurin-9-yl)-3-(2-cyclopropylethynyl)-3,4-dihydroxyoxolan-2-yl]methoxy]-2-benzylpropanedioic acid | 1964387: Inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells incubated for 1 hr by malachite green based spectrophotometer assay | ic50 | 0.0005 | uM |
| [2-[[(2R,3S,4R,5R)-5-[6-chloro-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy]-1-hydroxy-3-methoxypropan-2-yl]phosphonic acid | 1724307: Inhibition of human C-terminal His6-tagged CD73 expressed in CHO cells preincubated for 15 mins followed by AMP addition and measured after 10 mins by malachite green reagent based assay | ic50 | 0.0005 | uM |
| [(2R)-2-[[(2R,3S,4R,5R)-5-[6-chloro-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy]-1-hydroxypropan-2-yl]phosphonic acid | 1724307: Inhibition of human C-terminal His6-tagged CD73 expressed in CHO cells preincubated for 15 mins followed by AMP addition and measured after 10 mins by malachite green reagent based assay | ic50 | 0.0005 | uM |
| [[(2R,3S,4R,5R)-5-[6-chloro-4-[[(1S)-2,3-dihydro-1H-inden-1-yl]-methylamino]pyrazolo[5,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1724307: Inhibition of human C-terminal His6-tagged CD73 expressed in CHO cells preincubated for 15 mins followed by AMP addition and measured after 10 mins by malachite green reagent based assay | ic50 | 0.0005 | uM |
| bis(N,N-diethylethanamine);[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[(4Z)-3-methyl-2-oxo-4-[[4-(pentafluoro-lambda6-sulfanyl)phenyl]methoxyimino]pyrimidin-1-yl]oxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1819263: Inhibition of human soluble CD73 assessed as inhibition constant | ki | 0.0005 | uM |
| [[(2R,3R,4S,5R)-5-[6-(cyclopentylamino)-2-(methoxymethyl)purin-9-yl]-4-fluoro-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0006 | uM |
| [(2R,3S,4R,5R)-5-[6-chloro-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxymethylphosphonic acid | 1744447: Inhibition of CD73 in human SK-OV-3 cells incubated for 60 mins before addition of AMP and further incubated for 60 mins by colorimetric assay | ic50 | 0.0006 | uM |
| 2-benzyl-2-[[(2R,3S,4R,5R)-5-[2-chloro-6-(3-hydroxyazetidin-1-yl)purin-9-yl]-3-ethynyl-3,4-dihydroxyoxolan-2-yl]methoxy]propanedioic acid | 1964387: Inhibition of soluble C-terminal 6His-tagged recombinant human CD73 (27 to 547 residues) expressed in CHO cells incubated for 1 hr by malachite green based spectrophotometer assay | ic50 | 0.0006 | uM |
| [2-[[(2R,3S,4R,5R)-5-[6-chloro-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy]-1,3-dihydroxypropan-2-yl]phosphonic acid | 1724307: Inhibition of human C-terminal His6-tagged CD73 expressed in CHO cells preincubated for 15 mins followed by AMP addition and measured after 10 mins by malachite green reagent based assay | ic50 | 0.0006 | uM |
| [[(2R,3S,4R,5R)-5-[(4Z)-4-[[4-(2-aminoethylcarbamoyl)phenyl]methoxyimino]-3-methyl-2-oxopyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid;bis(N,N-diethylethanamine) | 1819263: Inhibition of human soluble CD73 assessed as inhibition constant | ki | 0.0006 | uM |
| 5-[3-[(1R)-2,2-difluoro-1-phenylethoxy]-1-methylpyrazolo[3,4-c]pyridazin-5-yl]-1H-pyrimidine-2,4-dione | 2094800: Inhibition of CD73 in human MDA-MB-231 cells preincubated for 30 mins followed by AMP addition and measured after 45 mins by plate reader analysis | ic50 | 0.0006 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-6-(propan-2-ylamino)purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0007 | uM |
| [[(2R,3R,4S,5R)-5-[6-(benzylamino)-2-chloropurin-9-yl]-4-fluoro-3-hydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0007 | uM |
| [[(2R,3S,4R,5R)-5-[2-chloro-6-[[(1R)-1-phenylethyl]amino]purin-9-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid | 1674269: Inhibition of human CD73 expressed in CHO cells using AMP as substrate preincubated for 60 mins followed by substrate addition and measured after 60 mins by PiColorLock gold reagent based colorimetric assay | ic50 | 0.0007 | uM |
| [[(2R,3S,4R,5R)-5-[(4Z)-4-[(4-chlorophenyl)methoxyimino]-3-methyl-2-oxopyrimidin-1-yl]-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl]methylphosphonic acid;bis(N,N-diethylethanamine) | 1819263: Inhibition of human soluble CD73 assessed as inhibition constant | ki | 0.0007 | uM |
| 5-[3-[(1R)-2,2-difluoro-1-(5-fluoro-2-pyridinyl)ethoxy]-1-methylpyrazolo[3,4-c]pyridazin-5-yl]-1H-pyrimidine-2,4-dione | 2094800: Inhibition of CD73 in human MDA-MB-231 cells preincubated for 30 mins followed by AMP addition and measured after 45 mins by plate reader analysis | ic50 | 0.0007 | uM |
CTD chemical–gene interactions
105 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Estradiol | decreases expression, decreases reaction, affects cotreatment, increases expression | 5 |
| Tetrachlorodibenzodioxin | affects expression, decreases expression | 4 |
| cobaltous chloride | decreases expression, increases expression | 3 |
| Tobacco Smoke Pollution | affects expression, decreases expression | 3 |
| Valproic Acid | decreases expression, decreases methylation, increases expression | 3 |
| Cyclosporine | affects expression, increases expression | 3 |
| bisphenol A | decreases expression, decreases methylation, increases expression | 2 |
| sodium arsenite | decreases expression, increases expression | 2 |
| chloropicrin | affects expression, decreases expression | 2 |
| Acetaminophen | decreases expression | 2 |
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation | 2 |
| Formaldehyde | decreases expression, increases expression | 2 |
| Nickel | increases expression | 2 |
| Phenylmercuric Acetate | increases expression, affects cotreatment | 2 |
| Quercetin | decreases expression, decreases activity | 2 |
| Medroxyprogesterone Acetate | affects cotreatment, increases expression, decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases expression | 2 |
| beta-Naphthoflavone | decreases expression | 2 |
| Particulate Matter | increases expression, decreases expression, increases abundance | 2 |
| aristolochic acid I | decreases expression | 1 |
| bisphenol F | increases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| dicrotophos | decreases expression | 1 |
| urushiol | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| uranyl acetate | affects expression | 1 |
| pirinixic acid | affects binding, decreases expression, increases activity | 1 |
| deoxynivalenol | decreases expression | 1 |
| lead acetate | increases expression | 1 |
| sodium arsenate | increases expression, increases abundance | 1 |
ChEMBL screening assays
181 unique, capped per target: 181 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1042900 | Binding | Activity at ecto-5’-nucleotidase | Nucleoside-5’-monophosphates as prodrugs of adenosine A2A receptor agonists activated by ecto-5’-nucleotidase. — J Med Chem |
Cellosaurus cell lines
5 cell lines: 2 cancer cell line, 1 induced pluripotent stem cell, 1 spontaneously immortalized cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1CI | Abcam A-431 NT5E KO | Cancer cell line | Female |
| CVCL_B7V4 | Abcam A-375 NT5E KO | Cancer cell line | Female |
| CVCL_C9M7 | BFVSBi001-A | Induced pluripotent stem cell | Male |
| CVCL_E6RF | Genomeditech CHO-K1 H_NT5E(CD73) | Spontaneously immortalized cell line | Female |
| CVCL_E6UR | Genomeditech HEK-293 H_NT5E(CD73) | Transformed cell line | Female |
Clinical trials (associated diseases)
197 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT05657860 | PHASE4 | COMPLETED | Guanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome |
| NCT05744479 | PHASE4 | RECRUITING | Metformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability |
| NCT06107829 | PHASE4 | WITHDRAWN | Valbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities |
| NCT06997198 | PHASE4 | NOT_YET_RECRUITING | Deutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities |
| NCT02270736 | PHASE3 | COMPLETED | Clinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability |
| NCT02304302 | PHASE2 | COMPLETED | Down Syndrome Memantine Follow-up Study |
| NCT03862950 | PHASE2 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome (Met) |
| NCT04529226 | PHASE2 | UNKNOWN | Study to Compare Clozapine vs Treatment as Usual in People With Intellectual Disability & Treatment-resistant Psychosis |
| NCT04821856 | PHASE2 | COMPLETED | Evaluation of the Effectiveness of Cannabidiol in Treating Severe Behavioural Problems in Children and Adolescents With Intellectual Disability |
| NCT05273320 | PHASE1 | COMPLETED | Clinical Trial of Nabilone for Aggression in Adults With Intellectual and Developmental Disabilities |
| NCT05301361 | PHASE1 | ENROLLING_BY_INVITATION | Sensitivity of the NIH Toolbox to Stimulant Treatment in Intellectual Disabilities |
| NCT06016764 | PHASE1 | COMPLETED | Use of MRI and cTBS for Catatonia in Autism |
| NCT06586827 | PHASE1 | COMPLETED | Impact of Competency-Based Training and Technical Assistance Employment Outcomes of Individuals With ID/DD |
| NCT07531940 | PHASE1 | NOT_YET_RECRUITING | Escalating Doses of Memantine in Down Syndrome (MEDS-123) |
| NCT03479476 | PHASE2/PHASE3 | COMPLETED | A Trial of Metformin in Individuals With Fragile X Syndrome |
| NCT02616796 | PHASE1/PHASE2 | COMPLETED | Effects of Social Gaze Training on Brain and Behavior in Fragile X Syndrome |
| NCT06860672 | EARLY_PHASE1 | RECRUITING | Clinical Trial of the Dual Vector Base Editor for the Treatment of the CHD3-R1025W Mutation |
| NCT00597948 | Not specified | COMPLETED | Healthy Lifestyles for People With Intellectual Disabilities |
| NCT01087320 | Not specified | RECRUITING | Genome Medical Sequencing for Gene Discovery |
| NCT01652963 | Not specified | UNKNOWN | Picture-based Computerised Assessment and Training of Cognitive Behaviour Therapy Skills |
| NCT01695395 | Not specified | COMPLETED | Mental Health Care Provision for Adults With Intellectual Disability and a Mental Disorder |
| NCT01867554 | Not specified | COMPLETED | Research and Characterization of New Genes Involved in Intellectual Disability |
| NCT01915381 | Not specified | COMPLETED | Improving Adherence Healthy Lifestyle With a Smartphone Application Based on Adults With Intellectual Disabilities |
| NCT01988623 | Not specified | COMPLETED | Pivotal Response Treatment for Individuals With Intellectual Disabilities |
| NCT02099773 | Not specified | COMPLETED | Support Staff-client Interactions With Augmentative and Alternative Communication |
| NCT02136849 | Not specified | COMPLETED | Inter-regional Project of the Great Western Exploration Approach for Exome Molecular Causes Severe Intellectual Disability Isolated or Syndromic |
| NCT02225041 | Not specified | COMPLETED | Sedation Strategy and Cognitive Outcome After Critical Illness in Early Childhood |
| NCT02414438 | Not specified | COMPLETED | Establishing the Clinical Utility of First StepDx PLUS and NextStepDx PLUS Study |
| NCT02451761 | Not specified | COMPLETED | Apparently Balanced Chromosomal Translocation/ Next-generation Sequencing/ Intellectual Disability |
| NCT02461420 | Not specified | ACTIVE_NOT_RECRUITING | Mapping the Genotype, Phenotype, and Natural History of Phelan-McDermid Syndrome |
| NCT02461459 | Not specified | ACTIVE_NOT_RECRUITING | Autism Spectrum Disorder (ASD) and Intellectual Disability (ID) Determinants in Tuberous Sclerosis Complex (TSC) |
| NCT02486081 | Not specified | COMPLETED | Development and Application-Smart Football for Movement Evaluation and Training in the Special Education Population |
| NCT02504502 | Not specified | COMPLETED | Enhancing Genomic Laboratory Reports to Enhance Communication and Empower Patients |
| NCT02513277 | Not specified | COMPLETED | Diabetes Screening & Prevention for People With Learning (Intellectual) Disabilities:STOP Diabetes Study |
| NCT02561754 | Not specified | COMPLETED | Weight Management for Adolescents With IDD |
| NCT02591446 | Not specified | COMPLETED | Transcranial Magnetic Stimulation Studies in Autism Spectrum Disorders |
| NCT02714868 | Not specified | COMPLETED | Evaluation of Project TEAM (Teens Making Environmental and Activity Modifications) |
| NCT02721394 | Not specified | UNKNOWN | FCT With Young Children With ID in the UK: A Feasibility Project V.1 |
| NCT02746614 | Not specified | COMPLETED | Psychomotor Therapy Effects in Adaptive Behavior and Motor Proficiency in Intellectual Disability |
| NCT02836405 | Not specified | COMPLETED | TMS for the Investigation of Brain Plasticity in Autism Spectrum Disorders |
Related Atlas pages
- Associated diseases: hereditary arterial and articular multiple calcification syndrome, colorectal carcinoma
- Biomarker drugs (CIViC) (drugs whose response is associated with variants in this gene — CIViC predictive evidence, not targeting): Cetuximab
- Targeted by drugs: Mupadolimab, Oleclumab, Quercetin
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): colorectal carcinoma, hereditary arterial and articular multiple calcification syndrome