NUDCD3
gene geneOn this page
Also known as KIAA1068NudCL
Summary
NUDCD3 (NudC domain containing 3, HGNC:22208) is a protein-coding gene on chromosome 7p13, encoding NudC domain-containing protein 3 (Q8IVD9). It is a selective cancer dependency (DepMap: 60.8% of cell lines).
The product of this gene functions to maintain the stability of dynein intermediate chain. Depletion of this gene product results in aggregation and degradation of dynein intermediate chain, mislocalization of the dynein complex from kinetochores, spindle microtubules, and spindle poles, and loss of gamma-tubulin from spindle poles. The protein localizes to the Golgi apparatus during interphase, and levels of the protein increase after the G1/S transition.
Source: NCBI Gene 23386 — RefSeq curated summary.
At a glance
- Gene–disease (curated): severe combined immunodeficiency (Strong, GenCC)
- GWAS associations: 2
- Clinical variants (ClinVar): 55 total — 1 likely-pathogenic
- Cancer dependency (DepMap): dependent in 60.8% of screened cell lines
- MANE Select transcript:
NM_015332
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:22208 |
| Approved symbol | NUDCD3 |
| Name | NudC domain containing 3 |
| Location | 7p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1068, NudCL |
| Ensembl gene | ENSG00000015676 |
| Ensembl biotype | protein_coding |
| OMIM | 610296 |
| Entrez | 23386 |
Gene structure
Transcript identifiers
Ensembl transcripts: 14 — 8 protein_coding_CDS_not_defined, 4 protein_coding, 2 retained_intron
ENST00000338427, ENST00000355451, ENST00000460110, ENST00000464812, ENST00000472246, ENST00000475952, ENST00000478769, ENST00000480209, ENST00000487118, ENST00000493613, ENST00000497978, ENST00000873878, ENST00000873879, ENST00000962334
RefSeq mRNA: 1 — MANE Select: NM_015332
NM_015332
CCDS: CCDS5490
Canonical transcript exons
ENST00000355451 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001551580 | 44379119 | 44386121 |
| ENSE00001700145 | 44490409 | 44490658 |
| ENSE00003554652 | 44484968 | 44485284 |
| ENSE00003650008 | 44427571 | 44427703 |
| ENSE00003655068 | 44404440 | 44404583 |
| ENSE00003676277 | 44392297 | 44392485 |
Expression profiles
Bgee: expression breadth ubiquitous, 287 present calls, max score 97.17.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 33.9815 / max 559.7910, expressed in 1821 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 83875 | 33.9815 | 1821 |
Top tissues by expression
295 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 97.17 | gold quality |
| prefrontal cortex | UBERON:0000451 | 97.10 | gold quality |
| right frontal lobe | UBERON:0002810 | 96.79 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 96.51 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 96.46 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 96.43 | gold quality |
| cerebellar cortex | UBERON:0002129 | 96.37 | gold quality |
| gastrocnemius | UBERON:0001388 | 96.27 | gold quality |
| muscle of leg | UBERON:0001383 | 96.23 | gold quality |
| stromal cell of endometrium | CL:0002255 | 96.09 | gold quality |
| nucleus accumbens | UBERON:0001882 | 95.99 | gold quality |
| cerebellum | UBERON:0002037 | 95.66 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 95.54 | gold quality |
| islet of Langerhans | UBERON:0000006 | 95.43 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 95.25 | gold quality |
| sural nerve | UBERON:0015488 | 95.25 | gold quality |
| popliteal artery | UBERON:0002250 | 95.16 | gold quality |
| tibial artery | UBERON:0007610 | 95.15 | gold quality |
| putamen | UBERON:0001874 | 95.09 | gold quality |
| caudate nucleus | UBERON:0001873 | 95.07 | gold quality |
| primary visual cortex | UBERON:0002436 | 95.06 | gold quality |
| ganglionic eminence | UBERON:0004023 | 95.01 | gold quality |
| frontal cortex | UBERON:0001870 | 94.98 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 94.95 | gold quality |
| aorta | UBERON:0000947 | 94.94 | gold quality |
| occipital lobe | UBERON:0002021 | 94.94 | gold quality |
| neocortex | UBERON:0001950 | 94.86 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 94.85 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 94.75 | gold quality |
| lower esophagus | UBERON:0013473 | 94.74 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-110499 | no | 411.49 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
82 targeting NUDCD3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-3692-3P | 99.98 | 70.27 | 2139 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-6845-3P | 99.94 | 66.88 | 1439 |
| HSA-MIR-4648 | 99.91 | 67.00 | 710 |
| HSA-MIR-8063 | 99.91 | 69.76 | 3146 |
| HSA-MIR-4447 | 99.85 | 67.81 | 2900 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-92A-2-5P | 99.75 | 67.01 | 2164 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-1976 | 99.74 | 65.48 | 1127 |
| HSA-MIR-1827 | 99.63 | 68.57 | 3265 |
| HSA-MIR-4663 | 99.62 | 65.33 | 957 |
| HSA-MIR-488-3P | 99.61 | 68.79 | 1731 |
| HSA-MIR-6861-3P | 99.60 | 68.46 | 444 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-516B-5P | 99.56 | 66.33 | 1495 |
| HSA-MIR-510-3P | 99.54 | 70.06 | 2965 |
| HSA-MIR-4441 | 99.49 | 66.56 | 3216 |
| HSA-MIR-1207-5P | 99.49 | 69.11 | 2983 |
| HSA-MIR-1324 | 99.46 | 66.57 | 1302 |
| HSA-MIR-6722-3P | 99.45 | 67.62 | 1919 |
| HSA-MIR-2392 | 99.43 | 67.50 | 708 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 60.8% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 2)
- Data characterize a previously undescribed mammalian NudC-like protein (NudCL), which appears to influence the stabilization of dynein intermediate chain (PMID:16754861)
- overexpression of NudCL inhibits cytokinesis (PMID:19806165)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | nudcd3 | ENSDARG00000098361 |
| mus_musculus | Nudcd3 | ENSMUSG00000053838 |
| rattus_norvegicus | Nudcd3 | ENSRNOG00000056148 |
| drosophila_melanogaster | CG31251 | FBGN0051251 |
Paralogs (2): NUDC (ENSG00000090273), NUDCD2 (ENSG00000170584)
Protein
Protein identifiers
NudC domain-containing protein 3 — Q8IVD9 (reviewed: Q8IVD9)
All UniProt accessions (1): Q8IVD9
RefSeq proteins (1): NP_056147* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR007052 | CS_dom | Domain |
| IPR008978 | HSP20-like_chaperone | Homologous_superfamily |
| IPR025934 | NudC_N_dom | Domain |
| IPR037898 | NudC_fam | Family |
| IPR037905 | p23_NUDCD3 | Domain |
Pfam: PF04969, PF14050
UniProt features (23 total): strand 9, modified residue 3, sequence variant 2, region of interest 2, compositionally biased region 2, chain 1, domain 1, sequence conflict 1, helix 1, turn 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 1WGV | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8IVD9-F1 | 80.39 | 0.50 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (3): 146, 340, 355
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 138 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_UP, GOBP_PROTEIN_LOCALIZATION_TO_CYTOSKELETON, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, LINDGREN_BLADDER_CANCER_CLUSTER_2A_DN, GOBP_PROTEIN_MATURATION, GOBP_CILIUM_ORGANIZATION, GOBP_ORGANELLE_ASSEMBLY, GOBP_PROTEIN_FOLDING, GOBP_PROTEIN_LOCALIZATION_TO_ORGANELLE, chr7p13, GOBP_CELL_PROJECTION_ORGANIZATION, HAN_SATB1_TARGETS_DN, ZHENG_BOUND_BY_FOXP3, ZHENG_FOXP3_TARGETS_IN_THYMUS_UP, GOCC_CYTOPLASMIC_DYNEIN_COMPLEX
GO Biological Process (3): protein folding (GO:0006457), cilium assembly (GO:0060271), protein localization to pericentriolar material (GO:1905793)
GO Molecular Function (2): obsolete unfolded protein binding (GO:0051082), protein binding (GO:0005515)
GO Cellular Component (2): cytoplasm (GO:0005737), cytoplasmic dynein complex (GO:0005868)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular process | 1 |
| protein maturation | 1 |
| axoneme assembly | 1 |
| intraciliary transport involved in cilium assembly | 1 |
| cilium organization | 1 |
| protein localization to cilium | 1 |
| organelle assembly | 1 |
| trans-Golgi to periciliary membrane compartment transport | 1 |
| plasma membrane bounded cell projection assembly | 1 |
| ciliary transition zone assembly | 1 |
| protein localization to centrosome | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cellular anatomical structure | 1 |
| dynein complex | 1 |
Protein interactions and networks
STRING
1362 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NUDCD3 | DYNC1H1 | Q14204 | 781 |
| NUDCD3 | PTGES3 | Q15185 | 781 |
| NUDCD3 | DYNC1I1 | O14576 | 763 |
| NUDCD3 | NUDCD2 | Q8WVJ2 | 713 |
| NUDCD3 | TUBG1 | P23258 | 593 |
| NUDCD3 | KLHL38 | Q2WGJ6 | 528 |
| NUDCD3 | NUDCD1 | Q96RS6 | 506 |
| NUDCD3 | HSP90AA1 | P07900 | 500 |
| NUDCD3 | UBFD1 | O14562 | 489 |
| NUDCD3 | PAFAH1B1 | P43034 | 489 |
| NUDCD3 | INTS15 | Q96N11 | 480 |
| NUDCD3 | FBXO24 | O75426 | 456 |
| NUDCD3 | TMEM68 | Q96MH6 | 453 |
| NUDCD3 | PIGT | Q969N2 | 446 |
| NUDCD3 | MEA1 | Q16626 | 441 |
IntAct
231 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ATG13 | ULK1 | psi-mi:“MI:2364”(proximity) | 0.940 |
| PEF1 | PDCD6 | psi-mi:“MI:0914”(association) | 0.900 |
| KLHL12 | KLHL2 | psi-mi:“MI:0914”(association) | 0.850 |
| RPGR | NPHP4 | psi-mi:“MI:2364”(proximity) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| KLHL6 | NUDCD3 | psi-mi:“MI:0914”(association) | 0.670 |
| HSP90AA1 | CHUK | psi-mi:“MI:0914”(association) | 0.670 |
| KLHL22 | TMEM223 | psi-mi:“MI:0914”(association) | 0.640 |
| KLHDC10 | CUL2 | psi-mi:“MI:0914”(association) | 0.640 |
| CUL3 | ENC1 | psi-mi:“MI:0914”(association) | 0.640 |
| KLHL23 | NUDCD3 | psi-mi:“MI:0915”(physical association) | 0.640 |
| KLHL22 | METTL15 | psi-mi:“MI:0914”(association) | 0.640 |
| KLHL15 | TOR1AIP1 | psi-mi:“MI:0914”(association) | 0.640 |
| KLHL9 | ENC1 | psi-mi:“MI:0914”(association) | 0.640 |
| PHLPP1 | USP12 | psi-mi:“MI:0914”(association) | 0.570 |
| KLHL1 | NUDCD3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CEP104 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.540 |
| KLHDC8A | PEX7 | psi-mi:“MI:0914”(association) | 0.530 |
| HCFC2 | SETD1A | psi-mi:“MI:0914”(association) | 0.530 |
| KBTBD4 | KPNA5 | psi-mi:“MI:0914”(association) | 0.530 |
| KLHDC2 | PFDN1 | psi-mi:“MI:0914”(association) | 0.530 |
| ENC1 | PLIN5 | psi-mi:“MI:0914”(association) | 0.530 |
| KLHL14 | KCTD21 | psi-mi:“MI:0914”(association) | 0.530 |
| HSP90AA1 | USP19 | psi-mi:“MI:0914”(association) | 0.530 |
| KLHDC3 | DPYSL4 | psi-mi:“MI:0914”(association) | 0.530 |
BioGRID (206): CCNDBP1 (Two-hybrid), KRTAP10-7 (Two-hybrid), KRTAP10-3 (Two-hybrid), NUDCD3 (Affinity Capture-MS), NUDCD3 (Affinity Capture-MS), NUDCD3 (Affinity Capture-MS), NUDCD3 (Affinity Capture-MS), NUDCD3 (Two-hybrid), NAE1 (Co-fractionation), NUDCD3 (Proximity Label-MS), NUDCD3 (Proximity Label-MS), NUDCD3 (Proximity Label-MS), NUDCD3 (Proximity Label-MS), NUDCD3 (Proximity Label-MS), NUDCD3 (Proximity Label-MS)
ESM2 similar proteins: A1Z623, A2SXS5, A8YXY3, F1LQY6, O02718, O19011, O60613, P01137, P04202, P07200, P09533, P11456, P18341, P50747, P54831, Q08BI9, Q0P5I0, Q1LZ96, Q2KIJ6, Q2TBX5, Q38HS2, Q3UHE1, Q3UX43, Q58CS8, Q5C9Z4, Q5R812, Q5RB75, Q6IEE6, Q6PCX7, Q6X4M2, Q802F3, Q802G7, Q8BJQ9, Q8IVD9, Q8NC56, Q8R1N4, Q8R1T1, Q8TDX6, Q8VHC3, Q8WUX9
Diamond homologs: O35685, O60166, P17624, Q17QG2, Q54M64, Q5RB75, Q5ZIN1, Q63525, Q8IVD9, Q9LV09, Q9STN7, Q9VVA6, Q9Y266, Q8R1N4, Q503C8
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 212 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Chaperone Mediated Autophagy | 5 | 17.4× | 1e-03 |
| Aggrephagy | 6 | 10.4× | 3e-03 |
| HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand | 7 | 9.5× | 1e-03 |
| Macroautophagy | 10 | 8.1× | 2e-04 |
| Neddylation | 18 | 6.0× | 9e-07 |
| Class I MHC mediated antigen processing & presentation | 10 | 4.9× | 4e-03 |
| Antigen processing: Ubiquitination & Proteasome degradation | 16 | 4.2× | 4e-04 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| protein localization to phagophore assembly site | 5 | 26.1× | 3e-04 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 26 | 7.1× | 5e-12 |
| protein folding | 11 | 6.0× | 6e-04 |
| ubiquitin-dependent protein catabolic process | 14 | 5.5× | 1e-04 |
| protein ubiquitination | 25 | 5.5× | 4e-09 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
55 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 1 |
| Uncertain significance | 44 |
| Likely benign | 0 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3391111 | NM_015332.4(NUDCD3):c.938A>C (p.His313Pro) | Likely pathogenic |
SpliceAI
1950 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:44392296:CCAG:C | donor_gain | 1.0000 |
| 7:44392318:G:A | donor_gain | 1.0000 |
| 7:44392486:CTGGG:C | acceptor_loss | 1.0000 |
| 7:44404451:T:TA | donor_gain | 1.0000 |
| 7:44404452:C:A | donor_gain | 1.0000 |
| 7:44427566:ATTAC:A | donor_loss | 1.0000 |
| 7:44427567:TTAC:T | donor_loss | 1.0000 |
| 7:44427568:TAC:T | donor_loss | 1.0000 |
| 7:44427569:A:AT | donor_loss | 1.0000 |
| 7:44427702:TC:T | acceptor_gain | 1.0000 |
| 7:44427703:CC:C | acceptor_gain | 1.0000 |
| 7:44427703:CCTGA:C | acceptor_loss | 1.0000 |
| 7:44427705:T:G | acceptor_loss | 1.0000 |
| 7:44485091:T:TA | donor_gain | 1.0000 |
| 7:44385999:T:A | donor_gain | 0.9900 |
| 7:44392275:T:A | donor_gain | 0.9900 |
| 7:44392348:AAG:A | donor_gain | 0.9900 |
| 7:44392364:G:GA | donor_gain | 0.9900 |
| 7:44392373:T:TA | donor_gain | 0.9900 |
| 7:44392481:TTCAC:T | acceptor_gain | 0.9900 |
| 7:44392482:TCAC:T | acceptor_gain | 0.9900 |
| 7:44392483:CAC:C | acceptor_gain | 0.9900 |
| 7:44392483:CACC:C | acceptor_gain | 0.9900 |
| 7:44392484:AC:A | acceptor_gain | 0.9900 |
| 7:44392485:CC:C | acceptor_gain | 0.9900 |
| 7:44392486:C:CC | acceptor_gain | 0.9900 |
| 7:44404433:AACTT:A | donor_loss | 0.9900 |
| 7:44404434:ACTTA:A | donor_loss | 0.9900 |
| 7:44404435:CT:C | donor_loss | 0.9900 |
| 7:44404436:TTAC:T | donor_loss | 0.9900 |
AlphaMissense
2386 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:44386071:G:C | F342L | 0.999 |
| 7:44386071:G:T | F342L | 0.999 |
| 7:44386072:A:C | F342C | 0.999 |
| 7:44386072:A:G | F342S | 0.999 |
| 7:44386073:A:G | F342L | 0.999 |
| 7:44386092:C:A | W335C | 0.999 |
| 7:44386092:C:G | W335C | 0.999 |
| 7:44386094:A:G | W335R | 0.999 |
| 7:44386094:A:T | W335R | 0.999 |
| 7:44386105:A:G | L331P | 0.999 |
| 7:44392331:T:G | Q314P | 0.999 |
| 7:44392349:A:G | L308P | 0.999 |
| 7:44392455:A:G | W273R | 0.999 |
| 7:44392455:A:T | W273R | 0.999 |
| 7:44404444:A:T | V261D | 0.999 |
| 7:44404469:A:G | W253R | 0.999 |
| 7:44404469:A:T | W253R | 0.999 |
| 7:44427639:A:G | W192R | 0.999 |
| 7:44427639:A:T | W192R | 0.999 |
| 7:44490488:G:A | T38I | 0.999 |
| 7:44490494:C:G | R36P | 0.999 |
| 7:44490502:G:C | F33L | 0.999 |
| 7:44490502:G:T | F33L | 0.999 |
| 7:44490504:A:G | F33L | 0.999 |
| 7:44490551:A:G | L17P | 0.999 |
| 7:44386056:G:C | F347L | 0.998 |
| 7:44386056:G:T | F347L | 0.998 |
| 7:44386058:A:G | F347L | 0.998 |
| 7:44392458:A:G | W272R | 0.998 |
| 7:44392458:A:T | W272R | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000026537 (7:44405539 C>T), RS1000051076 (7:44450384 G>A), RS1000084565 (7:44462626 T>C), RS1000114174 (7:44379440 G>A), RS1000149579 (7:44420876 T>C), RS1000169622 (7:44379742 C>A,T), RS1000180145 (7:44420616 T>C), RS1000186638 (7:44469087 A>C,G), RS1000191679 (7:44462753 C>T), RS1000194344 (7:44465313 C>T), RS1000260124 (7:44412726 G>A), RS1000272230 (7:44384807 C>T), RS1000295031 (7:44433746 T>C), RS1000300236 (7:44455882 C>T), RS1000324808 (7:44427757 C>T)
Disease associations
OMIM: gene MIM:610296 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| severe combined immunodeficiency | Strong | Autosomal recessive |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| severe combined immunodeficiency | Limited | AR |
Mondo (1): severe combined immunodeficiency (MONDO:0015974)
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006998_3 | Cerebrospinal fluid p-tau levels in mild cognitive impairment | 4.000000e-07 |
| GCST007741_35 | Iris color (b* coordinate) | 7.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004760 | t-tau measurement |
| EFO:0009764 | eye colour measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D016511 | Severe Combined Immunodeficiency | C16.320.798.750; C16.614.815; C18.452.284.800; C20.673.795.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
26 total (human), top 26 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| sodium arsenite | increases abundance, decreases expression, affects cotreatment | 3 |
| Rotenone | decreases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 2 |
| methylmercuric chloride | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| beta-methylcholine | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| azoxystrobin | decreases expression | 1 |
| perfluoro-n-nonanoic acid | decreases expression | 1 |
| deguelin | decreases expression | 1 |
| picoxystrobin | decreases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Dimethyl Sulfoxide | increases expression | 1 |
| Ivermectin | decreases expression | 1 |
| Lead | affects expression | 1 |
| Manganese | affects cotreatment, decreases expression, increases abundance | 1 |
| Methotrexate | decreases expression | 1 |
| Thiram | decreases expression | 1 |
| Fatty Acids, Omega-3 | decreases expression | 1 |
| Copper Sulfate | decreases expression | 1 |
| Fatty Acids, Omega-6 | increases expression | 1 |
Clinical trials (associated diseases)
44 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00220766 | PHASE3 | COMPLETED | Rapid Infusion of Immune Globulin Intravenous (Human) In Primary Immunodeficiency Patients |
| NCT01420627 | PHASE3 | COMPLETED | EZN-2279 in Patients With ADA-SCID |
| NCT06940570 | PHASE3 | SUSPENDED | Methadone as an Alternative Treatment for Children Underdoing HSCT |
| NCT00000603 | PHASE2 | COMPLETED | Cord Blood Stem Cell Transplantation Study (COBLT) |
| NCT00794508 | PHASE2 | COMPLETED | MND-ADA Transduction of CD34+ Cells From Children With ADA-SCID |
| NCT01182675 | PHASE2 | TERMINATED | Hematopoietic Stem Cell Transplantation (HSCT) for Children With SCID Utilizing Alemtuzumab, Plerixafor & Filgrastim |
| NCT01529827 | PHASE2 | COMPLETED | Fludarabine Phosphate, Melphalan, and Low-Dose Total-Body Irradiation Followed by Donor Peripheral Blood Stem Cell Transplant in Treating Patients With Hematologic Malignancies |
| NCT01821781 | PHASE2 | ACTIVE_NOT_RECRUITING | Immune Disorder HSCT Protocol |
| NCT02177760 | PHASE2 | WITHDRAWN | Sirolimus Prophylaxis for aGVHD in TME SCID |
| NCT03619551 | PHASE2 | ACTIVE_NOT_RECRUITING | Conditioning SCID Infants Diagnosed Early |
| NCT00008450 | PHASE1 | COMPLETED | Total-Body Irradiation Followed By Cyclosporine and Mycophenolate Mofetil in Treating Patients With Severe Combined Immunodeficiency Undergoing Donor Bone Marrow Transplant |
| NCT00028236 | PHASE1 | COMPLETED | Stem Cell Gene Therapy to Treat X-Linked Severe Combined Immunodeficiency (XSCID) |
| NCT00152100 | PHASE1 | COMPLETED | Transplantation of Hematopoietic Cells in Children With Severe Combined Immunodeficiency Syndrome |
| NCT02860559 | PHASE1 | UNKNOWN | Safety and Early Efficacy Study of TBX-1400 in Patients With Severe Combined Immunodeficiency |
| NCT01019876 | PHASE2/PHASE3 | COMPLETED | Risk-Adapted Allogeneic Stem Cell Transplantation For Mixed Donor Chimerism In Patients With Non-Malignant Diseases |
| NCT00228852 | PHASE1/PHASE2 | COMPLETED | IMM 0212: Busulfan With Fludarabine and Antithymocyte Globulin as Preparative Therapy for Hematopoietic Stem Cell Transplant for the Treatment of Severe Congenital T-Cell Immunodeficiency |
| NCT00579137 | PHASE1/PHASE2 | TERMINATED | Allogeneic SCT Of Pts With SCID And Other Primary Immunodeficiency Disorders |
| NCT01129544 | PHASE1/PHASE2 | COMPLETED | Gene Transfer for Severe Combined Immunodeficiency, X-linked (SCID-X1) Using a Self-inactivating (SIN) Gammaretroviral Vector |
| NCT01852370 | PHASE1/PHASE2 | ENROLLING_BY_INVITATION | Sequential Cadaveric Lung and Bone Marrow Transplant for Immune Deficiency Diseases |
| NCT02127892 | PHASE1/PHASE2 | TERMINATED | SCID Bu/Flu/ATG Study With T Cell Depletion |
| NCT02963064 | PHASE1/PHASE2 | TERMINATED | JSP191 Antibody Targeting Conditioning in SCID Patients |
| NCT03513328 | PHASE1/PHASE2 | COMPLETED | Conditioning Regimen for Allogeneic Hematopoietic Stem-Cell Transplantation |
| NCT03538899 | PHASE1/PHASE2 | RECRUITING | Autologous Gene Therapy for Artemis-Deficient SCID |
| NCT03597594 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Haplocompatible Transplant Using TCRα/β Depletion Followed by CD45RA-Depleted Donor Lymphocyte Infusions for Severe Combined Immunodeficiency (SCID) |
| NCT00001255 | Not specified | COMPLETED | Gene Transfer Therapy for Severe Combined Immunodeficieny Disease (SCID) Due to Adenosine Deaminase (ADA) Deficiency: A Natural History Study |
| NCT00006054 | Not specified | TERMINATED | Allogeneic Bone Marrow Transplantation in Patients With Primary Immunodeficiencies |
| NCT00006335 | Not specified | COMPLETED | Influences on Female Adolescents’ Decisions Regarding Testing for Carrier Status of XSCID |
| NCT00055172 | Not specified | RECRUITING | Genetic Basis of Immunodeficiency |
| NCT00695279 | Not specified | COMPLETED | Long Term Follow Up Of Patients Who Have Received Gene Therapy Or Gene Marked Products |
| NCT00845416 | Not specified | COMPLETED | Newborn Screening for Severe Combined Immunodeficiency (SCID) in a High-Risk Population |
| NCT01186913 | Not specified | ENROLLING_BY_INVITATION | Natural History Study of SCID Disorders |
| NCT01346150 | Not specified | UNKNOWN | Patients Treated for SCID (1968-Present) |
| NCT01652092 | Not specified | ACTIVE_NOT_RECRUITING | Allogeneic Hematopoietic Stem Cell Transplant for Patients With Primary Immune Deficiencies |
| NCT01953016 | Not specified | COMPLETED | Participation in a Research Registry for Immune Disorders |
| NCT02231983 | Not specified | UNKNOWN | Clinical Characteristics and Genetic Profiles of Severe Combined Immunodeficiency in China |
| NCT02590328 | Not specified | COMPLETED | Neonatal Screening of Severe Combined Immunodeficiencies |
| NCT04049084 | Not specified | ENROLLING_BY_INVITATION | An Observational LTFU Study for Patients Previously Treated With Autologous ex Vivo Gene Therapy for ADA-SCID |
| NCT04172181 | Not specified | UNKNOWN | Multi-center Clinical Study of Cord Blood Stem Cell Transplantation for SCID |
| NCT04246840 | Not specified | COMPLETED | Study Through Imaging of Visceral Lymphoid Organs in Patients With SCID Who Have Recieved Bone Marrow Allograft |
| NCT04331483 | Not specified | WITHDRAWN | A Study to Assess a Physical Activity Program in Children, Adolescents and Young Adults Requiring Hematopoietic Stem Cell Allografts |
Related Atlas pages
- Associated diseases: severe combined immunodeficiency
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): severe combined immunodeficiency