NUDT16-DT

Summary

NUDT16-DT (NUDT16 divergent transcript, HGNC:27947) is a long non-coding RNA gene on chromosome 3q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27947
Approved symbol	NUDT16-DT
Name	NUDT16 divergent transcript
Location	3q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250608
Ensembl biotype	lncRNA
Entrez	339874
RNAcentral	URS00007598FE — lncRNA, 1995 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 32 — 30 lncRNA, 2 retained_intron

ENST00000441345, ENST00000502521, ENST00000511699, ENST00000513905, ENST00000660567, ENST00000662182, ENST00000662294, ENST00000668739, ENST00000820002, ENST00000820003, ENST00000841405, ENST00000841406, ENST00000841407, ENST00000841408, ENST00000841409, ENST00000841410, ENST00000841411, ENST00000841412, ENST00000841413, ENST00000841414, ENST00000841415, ENST00000841416, ENST00000841417, ENST00000841418, ENST00000841419, ENST00000841420, ENST00000841421, ENST00000841422, ENST00000841423, ENST00000841424, ENST00000841425, ENST00000841426

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000441345 — 2 exons

Exon	Start	End
ENSE00001755477	131330088	131330867
ENSE00002019818	131361566	131361597

Expression profiles

Bgee: expression breadth ubiquitous, 160 present calls, max score 77.71.

FANTOM5 (CAGE): breadth broad, TPM avg 1.3365 / max 45.3426, expressed in 653 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
44590	0.8280	449
44589	0.2566	140
44588	0.2519	140

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of thyroid gland	UBERON:0001119	77.71	gold quality
left lobe of thyroid gland	UBERON:0001120	77.52	gold quality
thyroid gland	UBERON:0002046	76.48	gold quality
body of pancreas	UBERON:0001150	73.68	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.02	silver quality
monocyte	CL:0000576	72.85	gold quality
right lung	UBERON:0002167	72.18	gold quality
leukocyte	CL:0000738	71.99	gold quality
bone marrow cell	CL:0002092	71.46	gold quality
adenohypophysis	UBERON:0002196	70.83	gold quality
calcaneal tendon	UBERON:0003701	69.43	gold quality
right ovary	UBERON:0002118	69.28	gold quality
left ovary	UBERON:0002119	69.25	gold quality
colonic epithelium	UBERON:0000397	69.23	silver quality
descending thoracic aorta	UBERON:0002345	68.92	gold quality
tibial nerve	UBERON:0001323	68.79	gold quality
pituitary gland	UBERON:0000007	68.62	gold quality
popliteal artery	UBERON:0002250	68.51	gold quality
tibial artery	UBERON:0007610	68.49	gold quality
pancreas	UBERON:0001264	68.45	gold quality
small intestine Peyer’s patch	UBERON:0003454	68.36	gold quality
body of stomach	UBERON:0001161	68.31	gold quality
aorta	UBERON:0000947	68.10	gold quality
ascending aorta	UBERON:0001496	67.97	gold quality
thoracic aorta	UBERON:0001515	67.93	gold quality
apex of heart	UBERON:0002098	67.87	gold quality
mucosa of stomach	UBERON:0001199	67.76	gold quality
sural nerve	UBERON:0015488	67.24	gold quality
left coronary artery	UBERON:0001626	67.13	gold quality
spleen	UBERON:0002106	66.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.