NUMA1
gene geneOn this page
Also known as NUMA
Summary
NUMA1 (nuclear mitotic apparatus protein 1, HGNC:8059) is a protein-coding gene on chromosome 11q13.4, encoding Nuclear mitotic apparatus protein 1 (Q14980). Microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles and the alignement and the segregation of chromosomes during mitotic cell division. It is a selective cancer dependency (DepMap: 49.8% of cell lines).
This gene encodes a large protein that forms a structural component of the nuclear matrix. The encoded protein interacts with microtubules and plays a role in the formation and organization of the mitotic spindle during cell division. Chromosomal translocation of this gene with the RARA (retinoic acid receptor, alpha) gene on chromosome 17 have been detected in patients with acute promyelocytic leukemia. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 4926 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 256 total — 1 pathogenic
- Phenotypes (HPO): 36
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- Cancer driver (intOGen): loss-of-function (tumor-suppressor-like) across 2 cancer types
- Cancer dependency (DepMap): dependent in 49.8% of screened cell lines
- MANE Select transcript:
NM_006185
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8059 |
| Approved symbol | NUMA1 |
| Name | nuclear mitotic apparatus protein 1 |
| Location | 11q13.4 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | NUMA |
| Ensembl gene | ENSG00000137497 |
| Ensembl biotype | protein_coding |
| OMIM | 164009 |
| Entrez | 4926 |
Gene structure
Transcript identifiers
Ensembl transcripts: 54 — 43 protein_coding, 5 retained_intron, 5 protein_coding_CDS_not_defined, 1 nonsense_mediated_decay
ENST00000351960, ENST00000358965, ENST00000366394, ENST00000368959, ENST00000393695, ENST00000534971, ENST00000534987, ENST00000535087, ENST00000535111, ENST00000535838, ENST00000535947, ENST00000536119, ENST00000537217, ENST00000537905, ENST00000537930, ENST00000540588, ENST00000540626, ENST00000540843, ENST00000541262, ENST00000541584, ENST00000541641, ENST00000541719, ENST00000542977, ENST00000543009, ENST00000543450, ENST00000543937, ENST00000544129, ENST00000544238, ENST00000545721, ENST00000546036, ENST00000546131, ENST00000613205, ENST00000620566, ENST00000863445, ENST00000863446, ENST00000863447, ENST00000863448, ENST00000863449, ENST00000863450, ENST00000863451, ENST00000863452, ENST00000921275, ENST00000921276, ENST00000921277, ENST00000921278, ENST00000967521, ENST00000967522, ENST00000967523, ENST00000967524, ENST00000967525, ENST00000967526, ENST00000967527, ENST00000967528, ENST00000967529
RefSeq mRNA: 2 — MANE Select: NM_006185
NM_001286561, NM_006185
CCDS: CCDS31633, CCDS66156
Canonical transcript exons
ENST00000393695 — 27 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000927497 | 72008688 | 72008845 |
| ENSE00000927498 | 72008967 | 72009185 |
| ENSE00000927499 | 72009268 | 72009387 |
| ENSE00000927500 | 72010786 | 72010854 |
| ENSE00000990252 | 72012401 | 72012442 |
| ENSE00001403460 | 72069842 | 72069911 |
| ENSE00002439533 | 72016408 | 72016530 |
| ENSE00002456033 | 72017687 | 72017827 |
| ENSE00002514808 | 72012895 | 72016260 |
| ENSE00003486829 | 72007189 | 72007435 |
| ENSE00003487481 | 72018823 | 72018980 |
| ENSE00003495985 | 72035902 | 72035975 |
| ENSE00003522433 | 72018396 | 72018513 |
| ENSE00003540906 | 72022339 | 72022419 |
| ENSE00003548464 | 72029205 | 72029290 |
| ENSE00003619070 | 72005233 | 72005369 |
| ENSE00003624289 | 72004640 | 72004816 |
| ENSE00003635397 | 72006035 | 72006263 |
| ENSE00003637842 | 72019494 | 72019617 |
| ENSE00003648558 | 72004225 | 72004341 |
| ENSE00003656492 | 72018183 | 72018300 |
| ENSE00003683732 | 72021204 | 72021291 |
| ENSE00003686017 | 72024274 | 72024353 |
| ENSE00003692333 | 72003887 | 72004099 |
| ENSE00003693182 | 72023065 | 72023147 |
| ENSE00003900323 | 72002864 | 72003538 |
| ENSE00003903864 | 72080458 | 72080542 |
Expression profiles
Bgee: expression breadth ubiquitous, 294 present calls, max score 99.27.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 64.5793 / max 355.8293, expressed in 1825 samples.
FANTOM5 promoters (21 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 121143 | 22.0593 | 1785 |
| 121130 | 20.2812 | 1729 |
| 121141 | 6.6702 | 1394 |
| 121137 | 3.4666 | 939 |
| 121135 | 2.2122 | 1069 |
| 121136 | 1.8502 | 788 |
| 121142 | 1.5771 | 814 |
| 121144 | 1.2795 | 480 |
| 121128 | 1.2670 | 703 |
| 121140 | 0.8529 | 242 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 99.27 | gold quality |
| body of uterus | UBERON:0009853 | 99.09 | gold quality |
| endocervix | UBERON:0000458 | 99.01 | gold quality |
| left ovary | UBERON:0002119 | 98.99 | gold quality |
| right ovary | UBERON:0002118 | 98.94 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.90 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 98.90 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 98.84 | gold quality |
| ectocervix | UBERON:0012249 | 98.84 | gold quality |
| ventricular zone | UBERON:0003053 | 98.81 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.77 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 98.76 | gold quality |
| skin of abdomen | UBERON:0001416 | 98.75 | gold quality |
| skin of leg | UBERON:0001511 | 98.74 | gold quality |
| lower esophagus | UBERON:0013473 | 98.72 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 98.72 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 98.66 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 98.64 | gold quality |
| cerebellar cortex | UBERON:0002129 | 98.61 | gold quality |
| tibial nerve | UBERON:0001323 | 98.58 | gold quality |
| adenohypophysis | UBERON:0002196 | 98.57 | gold quality |
| ganglionic eminence | UBERON:0004023 | 98.54 | gold quality |
| left uterine tube | UBERON:0001303 | 98.53 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 98.52 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 98.50 | gold quality |
| transverse colon | UBERON:0001157 | 98.47 | gold quality |
| minor salivary gland | UBERON:0001830 | 98.46 | gold quality |
| right coronary artery | UBERON:0001625 | 98.45 | gold quality |
| body of stomach | UBERON:0001161 | 98.40 | gold quality |
| popliteal artery | UBERON:0002250 | 98.37 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6386 | no | 868.19 |
| E-MTAB-7303 | no | 665.33 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
46 targeting NUMA1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-4725-3P | 99.96 | 69.53 | 2520 |
| HSA-MIR-6780B-5P | 99.96 | 69.60 | 2562 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-8082 | 99.95 | 67.27 | 1170 |
| HSA-MIR-3143 | 99.93 | 71.96 | 3104 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-605-3P | 99.88 | 69.22 | 1833 |
| HSA-MIR-4271 | 99.88 | 68.32 | 2244 |
| HSA-MIR-548D-3P | 99.87 | 70.67 | 4362 |
| HSA-MIR-548BB-3P | 99.86 | 70.58 | 4354 |
| HSA-MIR-548AC | 99.84 | 70.77 | 4351 |
| HSA-MIR-548H-3P | 99.84 | 70.80 | 4349 |
| HSA-MIR-548Z | 99.84 | 70.80 | 4349 |
| HSA-MIR-4699-3P | 99.71 | 70.15 | 3142 |
| HSA-MIR-1208 | 99.70 | 68.28 | 1533 |
| HSA-MIR-3975 | 99.62 | 65.97 | 697 |
| HSA-MIR-3612 | 99.45 | 66.02 | 1333 |
| HSA-MIR-650 | 99.45 | 65.77 | 1309 |
| HSA-MIR-6882-5P | 99.35 | 71.13 | 1206 |
| HSA-MIR-4695-5P | 99.06 | 64.87 | 1151 |
| HSA-MIR-6770-5P | 98.97 | 66.76 | 1853 |
| HSA-MIR-7155-5P | 98.65 | 66.14 | 1290 |
| HSA-MIR-4700-5P | 98.63 | 67.43 | 1915 |
| HSA-MIR-6873-5P | 98.45 | 66.14 | 1417 |
| HSA-MIR-5088-3P | 98.29 | 66.63 | 1310 |
| HSA-MIR-8089 | 97.74 | 66.21 | 1698 |
| HSA-MIR-4667-5P | 97.61 | 66.67 | 1683 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 49.8% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 40)
- A domain within the C-terminal tail of NuMA interacts with tubulin and induces bundling and stabilisation of microtubules and leads to formation of abnormal mitotic spindles. (PMID:11956313)
- NuMA is cleaved differently in Jurkat T and HeLa cells, suggesting that different sets of caspases are activated in these cell lines. The normal diffuse intranuclear distribution of NuMA changed during apoptosis. (PMID:12508117)
- role in development of myelodi leukemia with promyelocytic features (PMID:14737102)
- Proteins and open reading frames with a NuMA C terminus distal portion like region were found in a diverse set of vertebrate species including mammals, birds, amphibia, and early teleost fish. (PMID:15388855)
- Multiple mechanisms regulate NUMA1 dynamics at spindle poles. (PMID:15561764)
- concluded that variations in the NuMA gene are likely responsible for the observed increased breast cancer risk (PMID:15684076)
- NuMA plays diverse important roles in vertebrate cells [review] (PMID:16146802)
- NuMA has a role in mammary epithelial differentiation by influencing the organization of chromatin. (PMID:17108325)
- point to the Rae1-NuMA interaction as a critical element for normal spindle formation in mitosis (PMID:17172455)
- NuMA is a structural element in maintaining nuclear integrity. (PMID:17401638)
- critical spindle pole-associated mechanism, called the END (Emi1/NuMA/dynein-dynactin) network, that spatially restricts APC/C activity in early mitosis (PMID:17609108)
- The entire coding region and exon-intron boundaries of NuMa were screened in 92 familial breast cancer patients & the results do not support the role of NuMA variants as breast cancer susceptibility alleles. (PMID:18331640)
- Kaposi’s sarcoma-associated herpesvirus-encoded LANA can interact with the nuclear mitotic apparatus protein to regulate genome maintenance and segregation. (PMID:18417561)
- Inhibiting Crm1 in early metaphase causes the formation of excess acentriolar spindle poles containing NuMA and B23, but does not affect centrosome numbers. (PMID:19522705)
- The levels of urinary NMP22 and CK18 in the patients with transitional cell carcinoma of the bladder were significantly higher than those in the non-transitional cell carcinoma of the bladder. (PMID:19615282)
- Data suggest that pADPr provides a dynamic cross-linking function at spindle poles by extending from covalent modification sites on PARP-5a and NuMA and binding noncovalently to NuMA and that this function helps promote assembly of exactly two poles. (PMID:19759176)
- These results suggest that NuMA may provide structural support in the interphase nucleus by contributing to the organization of chromatin. (PMID:20467816)
- Ric-8A and Gi alpha recruit LGN, NuMA, and dynein to the cell cortex to help orient the mitotic spindle. (PMID:20479129)
- Phenotype onset is correlated with NuMA-RARalpha copy number; mice with higher copy number developing disease later than those with lower copy number. (PMID:21255834)
- Accurate distribution of NuMA is important for oocyte maturation, zygote and embryo development in humans. Proper assembly of NuMA is likely necessary for bipolar spindle organization and human oocyte developmental competence. (PMID:21297155)
- NuMA is expressed in interphase nuclei of fibroblasts and oocytes. (PMID:21406448)
- nuclear matrix protein 22 (nuclear mitotic apparatus protein, NuMA) has a role in upper tract urothelial tumors. (PMID:21865670)
- During apoptotic rearrangement of interchromatin granule clusters, the nuclear matrix (NuMa rearrangement) and chromatin are closely associated. This process occurs in defined stages and depends on the activity of protein phosphatases, caspases and CAD. (PMID:22023725)
- Without functional NuMA, microtubules lose connection to meiosis I spindle poles, resulting in highly disorganized early spindle assembly. (PMID:22552228)
- Low NUMA1 is associtated with glioblastoma. (PMID:22619067)
- NuMA expression was upregulated in tumours, with a significant association with disease stage in mucinous EOC subtypes, lymph node involvement and patient age (PMID:22719996)
- Studies indicate that the Inscuteable (Insc)and NuMA are mutually exclusive interactors of LGN. (PMID:22977735)
- Phosphorylation of NuMA by aurora-A is important for cell survival. (PMID:23097092)
- Numa regulates spindle assemby in conjunction with Eg5. (PMID:23368718)
- Data indicate that dynein- and astral microtubule-mediated transport of Galphai/LGN/nuclear mitotic apparatus (NuMA) complex from cell cortex to spindle poles. (PMID:23389635)
- NuMA is required for the recruitment of cyclin-dependent kinase 8, a component of the Mediator complex and a promoter of p53-mediated p21 gene function. (PMID:23589328)
- ectopic expression of BRAP2 inhibits nuclear localization of HMG20A and NuMA1, and prevents nuclear envelope accumulation of SYNE2. (PMID:23707952)
- ectopic expression of NuMA can manipulate endogenous p53 and p21 transcriptional expression during interphase. (PMID:23828576)
- NuMA phosphorylation by CDK1 couples mitotic progression with cortical dynein function. (PMID:23921553)
- Hepatocyte Par1b defines lumen position in concert with the position of the astral microtubule anchoring complex LGN-NuMA to yield the distinct epithelial division phenotypes. (PMID:24165937)
- The mitosis-dependent dynamic SUMO-1 modification of NuMA might contribute to NuMA-mediated formation and maintenance of mitotic spindle poles during mitosis. (PMID:24309115)
- Retinoblastoma protein (pRB) have a novel function in regulating the mitotic function of NuMA and spindle organization, which are required for proper cell cycle progression. (PMID:24350565)
- Study finds that frictional forces increase nonlinearly with microtubule-associated proteins (MAP) velocity across microtubules and depend on filament polarity, with NuMA’s friction being lower when moving toward minus ends, EB1’s lower toward plus ends, and PRC1’s exhibiting no directional preference. (PMID:24725408)
- Letter: risk factors for false positive results when using urinary NMP22 as biomarker for early detection of bladder cancer. (PMID:24976592)
- NuMA interacts with phosphoinositides and links the mitotic spindle with the plasma membrane.During anaphase correct NuMA localization is mediated by direct membrane phospholipid binding. (PMID:24996901)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | numa1 | ENSDARG00000102483 |
| mus_musculus | Numa1 | ENSMUSG00000066306 |
| rattus_norvegicus | Numa1 | ENSRNOG00000000417 |
| drosophila_melanogaster | GCC185 | FBGN0037979 |
Paralogs (3): GOLGA3 (ENSG00000090615), CEP164 (ENSG00000110274), GCC2 (ENSG00000135968)
Protein
Protein identifiers
Nuclear mitotic apparatus protein 1 — Q14980 (reviewed: Q14980)
Alternative names: Nuclear matrix protein-22, Nuclear mitotic apparatus protein, SP-H antigen
All UniProt accessions (18): Q14980, F5GWA2, F5GWK2, F5GZW1, F5H068, F5H073, F5H0Z7, F5H1L0, F5H2F3, F5H3L6, F5H4J1, F5H4Y4, F5H6Y5, F5H763, F5H7R5, F8W6T3, H0YFY6, K4DIE0
UniProt curated annotations — full annotation on UniProt →
Function. Microtubule (MT)-binding protein that plays a role in the formation and maintenance of the spindle poles and the alignement and the segregation of chromosomes during mitotic cell division. Functions to tether the minus ends of MTs at the spindle poles, which is critical for the establishment and maintenance of the spindle poles. Plays a role in the establishment of the mitotic spindle orientation during metaphase and elongation during anaphase in a dynein-dynactin-dependent manner. In metaphase, part of a ternary complex composed of GPSM2 and G(i) alpha proteins, that regulates the recruitment and anchorage of the dynein-dynactin complex in the mitotic cell cortex regions situated above the two spindle poles, and hence regulates the correct oritentation of the mitotic spindle. During anaphase, mediates the recruitment and accumulation of the dynein-dynactin complex at the cell membrane of the polar cortical region through direct association with phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2), and hence participates in the regulation of the spindle elongation and chromosome segregation. Also binds to other polyanionic phosphoinositides, such as phosphatidylinositol 3-phosphate (PIP), lysophosphatidic acid (LPA) and phosphatidylinositol triphosphate (PIP3), in vitro. Also required for proper orientation of the mitotic spindle during asymmetric cell divisions. Plays a role in mitotic MT aster assembly. Involved in anastral spindle assembly. Positively regulates TNKS protein localization to spindle poles in mitosis. Highly abundant component of the nuclear matrix where it may serve a non-mitotic structural role, occupies the majority of the nuclear volume. Required for epidermal differentiation and hair follicle morphogenesis.
Subunit / interactions. Homodimer. Also forms multiarm oligomers by association of C-terminal tail domains, oligomers may further assemble to form a hexagonal nuclear lattice-like network. Associates with the dynein-dynactin complex; this association promotes the transport and accumulation of NUMA1 at the mitotic spindle poles that is inhibited by the BRISC complex in a PLK1-dependent manner. Part of a spindle orientation complex at least composed of GNAI1, GPSM2 and NUMA1. Interacts (via C-terminus) with microtubules (MTs); this interaction is direct and promotes both MT bundle formation and stability in a dynein-dynactin complex- and CDK1-independent manner. Interacts with EPB41 and EPB41L2; these interactions are negatively regulated by CDK1 during metaphase and are important for anaphase-specific localization of NUMA1 in symmetrically dividing cells. Interacts (via C-terminus) with GPSM2 (via TPR repeats); this interaction is direct, prevented by competitive binding of INSC, is inhibited in a PLK1-dependent manner, blocks the association of NUMA1 with MTs and inhibits NUMA1-induced MT bundle formation, prevents the association of NUMA1 with SPAG5, induces mitotic spindle pole localization of GPSM2, both metaphase cell cortex localization of NUMA1 and mitotic spindle organization. Does not interact with GPSM2 during anaphase. Interacts (via C-terminus) with the nuclear importin alpha/importin beta receptor; this interaction is inhibited by RanGTP. Interacts (via C-terminus) with KPNB1; this interaction is inhibited by RanGTP and the BRISC complex. Interacts with ABRAXAS2 and the BRISC complex; these interactions regulate mitotic spindle assembly. Interacts (via N-terminal end of the coiled-coil domain) with RAE1; this interaction promotes mitotic spindle formation. Interacts (via C-terminus) with SPAG5 (via C-terminus); this interaction promotes the recruitment of SPAG5 to the MTs at spindle poles in a dynein-dynactin-dependent manner and regulates mitotic spindle organization and proper chromosome alignment during mitosis. Interacts with TNKS; this interaction occurs at the onset of mitosis. Interacts with TNKS2. Interacts with tubulin. Interacts with KHDC3L (via C-terminus).
Subcellular location. Nucleus. Nucleoplasm. Nucleus matrix. Chromosome. Cytoplasm. Cytoskeleton. Microtubule organizing center. Centrosome. Spindle pole. Cell cortex. Cell membrane. Lateral cell membrane Cytoplasm. Cytosol. Spindle pole Cytoplasm.
Post-translational modifications. Phosphorylation and dephosphorylation on Thr-2055 regulates the extent of cortical NUMA1 and the dynein-dynactin complex localization during mitotic metaphase and anaphase. In metaphase, phosphorylation on Thr-2055 occurs in a kinase CDK1-dependent manner; this phosphorylation maintains low levels of cortical dynein-dynactin complex at metaphase, and hence proper spindle positioning. In anaphase, dephosphorylated on Thr-2055 by phosphatase PPP2CA; this dephosphorylation stimulates its membrane association and with the dynein-dynactin complex its enrichment at the cell cortex, and hence robust spindle elongation. Probably also phosphorylated on Thr-2015 and Ser-2087 by CDK1; these phosphorylations may regulate its cell cortex recruitment during metaphase and anaphase. Phosphorylated on Thr-1047, Ser-1769, Ser-1772, Ser-1789 and Ser-1834 by PLK1; these phosphorylations induce cortical dynein-dynactin complex dissociation from the NUMA1-GPSM2 complex and negatively regulates cortical dynein-dynactin complex localization. ADP-ribosylated by TNKS at the onset of mitosis; ADP-ribosylation is not required for its localization to spindle poles. O-glycosylated during cytokinesis at sites identical or close to phosphorylation sites, this interferes with the phosphorylation status. Ubiquitinated with ‘Lys-63’-linked polyubiquitin chains. Deubiquitination by the BRISC complex is important for the incorporation of NUMA1 into mitotic spindle poles and normal spindle pole function, probably by modulating interactions between NUMA1, dynein-dynactin complex and importin-beta.
Domain organisation. The C-terminal tubulin-binding domain mediates direct binding to microtubules, independently of dynein-dynactin complex, and induces their bundling and stabilization. The 4.1-binding domain is necessary for its cortical stability and spindle orientation.
Miscellaneous. Also known as nuclear matrix protein-22/NMP-22/NMP22, an antigen used in diagnostic tests of bladder cancer.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q14980-1 | 1, Numa-1, p230 | yes |
| Q14980-2 | 2 | |
| Q14980-3 | 3, Numa-m, p195 | |
| Q14980-4 | 4, Numa-s, p194 | |
| Q14980-5 | 5 |
RefSeq proteins (2): NP_001273490, NP_006176* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR048724 | NuMA_N_HOOK | Domain |
| IPR048726 | NuMA_LGNBD | Domain |
| IPR051841 | MT-Golgi_org_protein | Family |
Pfam: PF21670
UniProt features (132 total): modified residue 49, region of interest 16, compositionally biased region 16, helix 11, mutagenesis site 9, sequence conflict 7, sequence variant 6, strand 4, cross-link 4, splice variant 4, short sequence motif 2, chain 1, turn 1, coiled-coil region 1, glycosylation site 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 6QJA | X-RAY DIFFRACTION | 1.54 |
| 3RO2 | X-RAY DIFFRACTION | 2.3 |
| 5GXW | X-RAY DIFFRACTION | 2.39 |
| 6HC2 | X-RAY DIFFRACTION | 4.31 |
| 9HHL | ELECTRON MICROSCOPY | 6.53 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q14980-F1 | 65.19 | 0.00 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (53): 162, 163, 169, 203, 211, 271, 379, 388, 395, 820, 891, 1047, 1187, 1225, 1511, 1601, 1721, 1724, 1728, 1757 …
Glycosylation sites (1): 1844
Mutagenesis-validated functional residues (9):
| Position | Phenotype |
|---|---|
| 1910 | abolishes interaction with gpsm2. |
| 1984 | no effect on nuclear localization. |
| 1988 | abolishes nuclear localization. |
| 2015 | abolishes association with the mitotic spindle. increases premature accumulation at the cell cortex during metaphase; wh |
| 2055 | increases premature accumulation at the cell membrane of the polar cortical region in prophase and metaphase. reduces as |
| 2055 | increases localization at the spindle poles. decreases localization at the cell cortex. |
| 2055 | absence of cell membrane association even in anaphase. increased localization at spindle poles and chromosome congressio |
| 2087 | abolishes association with the mitotic spindle. increases premature accumulation at the cell cortex during metaphase; wh |
| 2106 | abolishes association with the mitotic spindle. |
Function
Pathways and Gene Ontology
Reactome pathways
2 pathways
| ID | Pathway |
|---|---|
| R-HSA-380320 | Recruitment of NuMA to mitotic centrosomes |
| R-HSA-68875 | Mitotic Prophase |
MSigDB gene sets: 479 (showing top):
GOBP_POSITIVE_REGULATION_OF_EPITHELIAL_CELL_DIFFERENTIATION, GGGACCA_MIR133A_MIR133B, GOBP_CHROMOSOME_ORGANIZATION, GOBP_ESTABLISHMENT_OF_SPINDLE_ORIENTATION, GOBP_REGULATION_OF_CELLULAR_RESPONSE_TO_GROWTH_FACTOR_STIMULUS, GOBP_EPITHELIUM_DEVELOPMENT, GOBP_PROTEIN_LOCALIZATION_TO_CYTOSKELETON, GOBP_REGULATION_OF_PROTEIN_POLYMERIZATION, GOBP_CYTOPLASMIC_MICROTUBULE_ORGANIZATION, GOBP_ESTABLISHMENT_OR_MAINTENANCE_OF_CELL_POLARITY, GOBP_REGULATION_OF_MICROTUBULE_BASED_PROCESS, GOBP_POSITIVE_REGULATION_OF_KERATINOCYTE_DIFFERENTIATION, GOBP_REGULATION_OF_EPIDERMIS_DEVELOPMENT, GOBP_SPINDLE_LOCALIZATION, GOBP_CHROMOSOME_LOCALIZATION
GO Biological Process (21): establishment of mitotic spindle orientation (GO:0000132), microtubule bundle formation (GO:0001578), nucleus organization (GO:0006997), positive regulation of BMP signaling pathway (GO:0030513), astral microtubule organization (GO:0030953), positive regulation of microtubule polymerization (GO:0031116), positive regulation of intracellular transport (GO:0032388), positive regulation of keratinocyte differentiation (GO:0045618), cell division (GO:0051301), meiotic cell cycle (GO:0051321), positive regulation of hair follicle development (GO:0051798), positive regulation of chromosome segregation (GO:0051984), anastral spindle assembly (GO:0055048), regulation of mitotic spindle organization (GO:0060236), regulation of metaphase plate congression (GO:0090235), positive regulation of protein localization to spindle pole body (GO:1902365), positive regulation of mitotic spindle elongation (GO:1902846), positive regulation of protein localization to cell cortex (GO:1904778), positive regulation of chromosome separation (GO:1905820), positive regulation of spindle assembly (GO:1905832), chromosome segregation (GO:0007059)
GO Molecular Function (12): structural molecule activity (GO:0005198), microtubule binding (GO:0008017), tubulin binding (GO:0015631), protein domain specific binding (GO:0019904), phosphatidylinositol binding (GO:0035091), protein-containing complex binding (GO:0044877), microtubule plus-end binding (GO:0051010), microtubule minus-end binding (GO:0051011), dynein complex binding (GO:0070840), disordered domain specific binding (GO:0097718), protein binding (GO:0005515), lipid binding (GO:0008289)
GO Cellular Component (32): spindle pole (GO:0000922), nucleus (GO:0005634), nucleoplasm (GO:0005654), chromosome (GO:0005694), centrosome (GO:0005813), spindle (GO:0005819), cytosol (GO:0005829), spindle microtubule (GO:0005876), plasma membrane (GO:0005886), cell cortex (GO:0005938), lateral plasma membrane (GO:0016328), nuclear matrix (GO:0016363), dendrite (GO:0030425), spindle pole centrosome (GO:0031616), protein-containing complex (GO:0032991), microtubule plus-end (GO:0035371), microtubule minus-end (GO:0036449), neuronal cell body (GO:0043025), cortical microtubule (GO:0055028), mitotic spindle astral microtubule (GO:0061673), extracellular exosome (GO:0070062), mitotic spindle (GO:0072686), microtubule bundle (GO:0097427), mitotic spindle pole (GO:0097431), lateral cell cortex (GO:0097575), cell cortex region (GO:0099738), cytoplasmic microtubule bundle (GO:1905720), mitotic spindle midzone (GO:1990023), cytoplasm (GO:0005737), cytoskeleton (GO:0005856), microtubule (GO:0005874), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-2 pathways:
| Category | Pathways |
|---|---|
| Mitotic Prometaphase | 1 |
| M Phase | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 5 |
| positive regulation of cell cycle process | 3 |
| binding | 3 |
| positive regulation of multicellular organismal process | 2 |
| spindle assembly | 2 |
| microtubule binding | 2 |
| spindle | 2 |
| nuclear lumen | 2 |
| intracellular membraneless organelle | 2 |
| cytoplasm | 2 |
| cell periphery | 2 |
| microtubule end | 2 |
| mitotic cell cycle | 1 |
| establishment of mitotic spindle localization | 1 |
| establishment of spindle orientation | 1 |
| microtubule cytoskeleton organization | 1 |
| organelle organization | 1 |
| BMP signaling pathway | 1 |
| regulation of BMP signaling pathway | 1 |
| positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | 1 |
| spindle organization | 1 |
| cytoplasmic microtubule organization | 1 |
| positive regulation of microtubule polymerization or depolymerization | 1 |
| regulation of microtubule polymerization | 1 |
| positive regulation of protein polymerization | 1 |
| microtubule polymerization | 1 |
| positive regulation of supramolecular fiber organization | 1 |
| regulation of intracellular transport | 1 |
| intracellular transport | 1 |
| positive regulation of cellular process | 1 |
| positive regulation of transport | 1 |
| keratinocyte differentiation | 1 |
| positive regulation of epidermal cell differentiation | 1 |
| regulation of keratinocyte differentiation | 1 |
| cellular process | 1 |
| cell cycle | 1 |
| sexual reproduction | 1 |
| reproductive process | 1 |
| meiotic nuclear division | 1 |
| hair follicle development | 1 |
Protein interactions and networks
STRING
3474 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NUMA1 | GPSM2 | P81274 | 949 |
| NUMA1 | HAUS6 | Q7Z4H7 | 919 |
| NUMA1 | TNKS | O95271 | 884 |
| NUMA1 | EPB41L2 | O43491 | 834 |
| NUMA1 | RARA | P10276 | 829 |
| NUMA1 | NPM1 | P06748 | 817 |
| NUMA1 | ZBTB16 | Q05516 | 816 |
| NUMA1 | TUBG1 | P23258 | 800 |
| NUMA1 | KIF11 | P52732 | 734 |
| NUMA1 | KIFC1 | Q9BW19 | 720 |
| NUMA1 | HAUS1 | Q96CS2 | 714 |
| NUMA1 | HAUS3 | Q68CZ6 | 709 |
| NUMA1 | PRKAR1A | P10644 | 708 |
| NUMA1 | HAUS8 | Q9BT25 | 703 |
| NUMA1 | DCTN1 | Q14203 | 694 |
IntAct
189 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RAE1 | NUP98 | psi-mi:“MI:0914”(association) | 0.930 |
| HDAC2 | KDM1A | psi-mi:“MI:0914”(association) | 0.890 |
| MED9 | MED19 | psi-mi:“MI:0914”(association) | 0.790 |
| YEATS4 | ZNHIT1 | psi-mi:“MI:0914”(association) | 0.790 |
| XPC | CETN3 | psi-mi:“MI:0914”(association) | 0.730 |
| MED19 | MED19 | psi-mi:“MI:0914”(association) | 0.730 |
| RAE1 | NUMA1 | psi-mi:“MI:0915”(physical association) | 0.710 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| TNKS2 | NUMA1 | psi-mi:“MI:0915”(physical association) | 0.660 |
| NUMA1 | TNKS2 | psi-mi:“MI:0407”(direct interaction) | 0.660 |
| GPSM2 | NUMA1 | psi-mi:“MI:0915”(physical association) | 0.600 |
| GNAI1 | NUMA1 | psi-mi:“MI:0915”(physical association) | 0.600 |
| NUMA1 | GNAI1 | psi-mi:“MI:0914”(association) | 0.600 |
| NUMA1 | GPSM2 | psi-mi:“MI:0915”(physical association) | 0.600 |
| CCDC57 | NUMA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| FLJ13057 | NUMA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NUMA1 | FLJ13057 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NUMA1 | KRT4 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (619): GMCL1 (Two-hybrid), CCDC57 (Two-hybrid), NUMA1 (Affinity Capture-RNA), NUMA1 (Affinity Capture-RNA), NUMA1 (Affinity Capture-RNA), NUMA1 (Two-hybrid), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS), NUMA1 (Affinity Capture-MS)
ESM2 similar proteins: A0JMK8, A0JNT9, A2AUM9, A2BGD5, A6PWD2, A9QT41, B8JK76, E9Q1U1, O75335, O88522, P0CB05, P0CF95, Q08378, Q0KK56, Q14980, Q1LWB0, Q29RS0, Q2KJ21, Q2TAC2, Q3TMW1, Q502I3, Q5RD60, Q5U3A8, Q60952, Q66HR5, Q6DD09, Q6P132, Q6P402, Q6PGZ0, Q6PHN1, Q6TMG5, Q6ZP65, Q804T6, Q8BMK0, Q8CGU1, Q8CHW5, Q8K2I2, Q8K3K8, Q8R5M4, Q8VDC1
Diamond homologs: E9Q7G0, Q14980
SIGNOR signaling
20 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NUMA1 | up-regulates | TUBA1B | binding |
| NUMA1 | up-regulates | TUBA1A | binding |
| NUMA1 | up-regulates | TUBA1C | binding |
| NUMA1 | up-regulates | “TUBAC Family” | binding |
| NUMA1 | up-regulates | TUBA3E | binding |
| NUMA1 | up-regulates | TUBA4A | binding |
| NUMA1 | up-regulates | TUBA8 | binding |
| NUMA1 | up-regulates | TUBB | binding |
| NUMA1 | up-regulates | TUBB2A | binding |
| NUMA1 | up-regulates | TUBB3 | binding |
| NUMA1 | up-regulates | TUBB4A | binding |
| NUMA1 | up-regulates | TUBB4B | binding |
| NUMA1 | up-regulates | TUBB6 | binding |
| NUMA1 | up-regulates | TUBD1 | binding |
| NUMA1 | up-regulates | TUBG1 | binding |
| CDK1 | down-regulates | NUMA1 | phosphorylation |
| NUMA1 | up-regulates | Tubulin | binding |
| EPB41 | “up-regulates activity” | NUMA1 | relocalization |
| TBK1 | “up-regulates activity” | NUMA1 | phosphorylation |
| PLK1 | “down-regulates activity” | NUMA1 | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 210 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| NEP/NS2 Interacts with the Cellular Export Machinery | 6 | 15.1× | 9e-04 |
| Nuclear import of Rev protein | 6 | 14.6× | 9e-04 |
| Rev-mediated nuclear export of HIV RNA | 6 | 13.8× | 9e-04 |
| Transport of Ribonucleoproteins into the Host Nucleus | 5 | 12.9× | 3e-03 |
| NS1 Mediated Effects on Host Pathways | 6 | 12.4× | 9e-04 |
| Vpr-mediated nuclear import of PICs | 5 | 12.2× | 3e-03 |
| Transport of the SLBP independent Mature mRNA | 5 | 11.8× | 3e-03 |
| Transport of the SLBP Dependant Mature mRNA | 5 | 11.5× | 3e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| RNA export from nucleus | 5 | 25.2× | 3e-04 |
| establishment of mitotic spindle orientation | 5 | 12.9× | 6e-03 |
| neuron projection morphogenesis | 6 | 8.9× | 8e-03 |
| telomere maintenance | 6 | 8.6× | 8e-03 |
| protein import into nucleus | 11 | 8.5× | 4e-05 |
| heterochromatin formation | 6 | 8.2× | 8e-03 |
| chromatin remodeling | 15 | 5.9× | 4e-05 |
| mitotic cell cycle | 8 | 5.8× | 8e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: loss-of-function (tumor-suppressor-like) across 2 cancer types — BRCA, ESCA.
Clinical variants and AI predictions
ClinVar
256 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 189 |
| Likely benign | 29 |
| Benign | 11 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1801783 | NM_006185.4(NUMA1):c.3716G>C (p.Arg1239Pro) | Pathogenic |
SpliceAI
4466 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 11:72003890:G:A | donor_gain | 1.0000 |
| 11:72004098:GCC:G | acceptor_loss | 1.0000 |
| 11:72004099:CCT:C | acceptor_loss | 1.0000 |
| 11:72004100:C:CC | acceptor_gain | 1.0000 |
| 11:72004219:CCTCA:C | donor_loss | 1.0000 |
| 11:72004220:CTCAC:C | donor_loss | 1.0000 |
| 11:72004221:TCAC:T | donor_loss | 1.0000 |
| 11:72004222:CAC:C | donor_loss | 1.0000 |
| 11:72004223:A:AC | donor_gain | 1.0000 |
| 11:72004223:A:AG | donor_loss | 1.0000 |
| 11:72004224:C:CC | donor_gain | 1.0000 |
| 11:72004224:C:G | donor_loss | 1.0000 |
| 11:72004337:TTAGA:T | acceptor_gain | 1.0000 |
| 11:72004338:TAGA:T | acceptor_gain | 1.0000 |
| 11:72004339:AGA:A | acceptor_gain | 1.0000 |
| 11:72004340:GA:G | acceptor_gain | 1.0000 |
| 11:72004342:C:CC | acceptor_gain | 1.0000 |
| 11:72004342:C:CG | acceptor_loss | 1.0000 |
| 11:72004343:T:G | acceptor_loss | 1.0000 |
| 11:72004344:A:C | acceptor_gain | 1.0000 |
| 11:72004635:CCTA:C | donor_loss | 1.0000 |
| 11:72004636:CTA:C | donor_loss | 1.0000 |
| 11:72004637:TAC:T | donor_loss | 1.0000 |
| 11:72004638:ACCT:A | donor_loss | 1.0000 |
| 11:72004639:C:G | donor_loss | 1.0000 |
| 11:72004812:GAAGG:G | acceptor_gain | 1.0000 |
| 11:72004813:AAGG:A | acceptor_gain | 1.0000 |
| 11:72004814:AGG:A | acceptor_gain | 1.0000 |
| 11:72004814:AGGC:A | acceptor_loss | 1.0000 |
| 11:72004815:GG:G | acceptor_gain | 1.0000 |
AlphaMissense
13753 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 11:72005285:C:G | R1926P | 0.998 |
| 11:72005313:A:G | W1917R | 0.998 |
| 11:72005313:A:T | W1917R | 0.998 |
| 11:72005261:A:G | L1934P | 0.997 |
| 11:72005286:G:T | R1926S | 0.997 |
| 11:72005294:A:G | L1923P | 0.997 |
| 11:72005311:C:A | W1917C | 0.997 |
| 11:72005311:C:G | W1917C | 0.997 |
| 11:72009176:C:G | A1617P | 0.997 |
| 11:72007224:G:T | R1810S | 0.996 |
| 11:72005281:A:C | N1927K | 0.995 |
| 11:72005281:A:T | N1927K | 0.995 |
| 11:72005257:C:A | K1935N | 0.994 |
| 11:72005257:C:G | K1935N | 0.994 |
| 11:72013697:A:G | L1269P | 0.994 |
| 11:72018214:A:G | L316P | 0.994 |
| 11:72018256:A:G | L302P | 0.994 |
| 11:72005306:C:G | R1919P | 0.993 |
| 11:72007327:G:C | F1775L | 0.993 |
| 11:72007327:G:T | F1775L | 0.993 |
| 11:72007329:A:G | F1775L | 0.993 |
| 11:72018909:A:G | L219P | 0.993 |
| 11:72005301:C:G | A1921P | 0.991 |
| 11:72005303:A:C | I1920S | 0.991 |
| 11:72009153:C:A | K1624N | 0.991 |
| 11:72009153:C:G | K1624N | 0.991 |
| 11:72012905:A:G | L1533P | 0.991 |
| 11:72018286:A:G | L292P | 0.991 |
| 11:72005303:A:T | I1920N | 0.990 |
| 11:72008836:C:G | A1690P | 0.990 |
dbSNP variants (sampled 300 via entrez): RS1000061300 (11:72014287 C>T), RS1000067371 (11:72060084 A>G), RS1000076172 (11:72066970 T>C), RS1000094189 (11:72020743 T>C,G), RS1000135636 (11:72061348 G>A), RS1000200302 (11:72027309 C>T), RS1000224007 (11:72050380 A>G), RS1000273913 (11:72027639 T>A,C), RS1000300466 (11:72040764 T>C), RS1000308658 (11:72074341 A>G), RS1000423045 (11:72046974 A>G), RS1000458108 (11:72062016 T>C), RS1000526484 (11:72020922 C>T), RS1000534995 (11:72073020 C>A), RS1000542596 (11:72025693 G>A)
Disease associations
OMIM: gene MIM:164009 | disease phenotypes: MIM:612376, MIM:611451
GenCC curated gene-disease
Mondo (3): myoepithelial tumor (MONDO:0002380), acute promyelocytic leukemia (MONDO:0012883), autosomal recessive nonsyndromic hearing loss 63 (MONDO:0012670)
Orphanet (2): Acute promyelocytic leukemia (Orphanet:520), Rare autosomal recessive non-syndromic sensorineural deafness type DFNB (Orphanet:90636)
HPO phenotypes
36 total (30 of 36 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000212 | Gingival overgrowth |
| HP:0000225 | Gingival bleeding |
| HP:0000421 | Epistaxis |
| HP:0000790 | Hematuria |
| HP:0000967 | Petechiae |
| HP:0000978 | Bruising susceptibility |
| HP:0000979 | Purpura |
| HP:0001324 | Muscle weakness |
| HP:0001824 | Weight loss |
| HP:0001873 | Thrombocytopenia |
| HP:0001875 | Decreased total neutrophil count |
| HP:0001876 | Pancytopenia |
| HP:0001882 | Decreased total leukocyte count |
| HP:0001892 | Abnormal bleeding |
| HP:0001903 | Anemia |
| HP:0001945 | Fever |
| HP:0001974 | Increased total leukocyte count |
| HP:0002027 | Abdominal pain |
| HP:0002039 | Anorexia |
| HP:0002321 | Vertigo |
| HP:0002653 | Bone pain |
| HP:0002716 | Lymphadenopathy |
| HP:0002875 | Exertional dyspnea |
| HP:0005521 | Disseminated intravascular coagulation |
| HP:0010280 | Stomatitis |
| HP:0011900 | Hypofibrinogenemia |
| HP:0012378 | Fatigue |
| HP:0025420 | Diffuse alveolar hemorrhage |
| HP:0030140 | Oral cavity bleeding |
| HP:0030955 | Addictive alcohol use |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST002804_1 | Antibody level in response to infection | 8.000000e-07 |
| GCST003123_25 | Severe influenza A (H1N1) infection | 8.000000e-17 |
| GCST008790_42 | Urinary albumin-to-creatinine ratio | 9.000000e-10 |
| GCST008791_13 | Microalbuminuria | 7.000000e-06 |
| GCST008794_34 | Urinary albumin-to-creatinine ratio | 2.000000e-09 |
| GCST009640_17 | Urinary albumin-to-creatinine ratio | 1.000000e-09 |
EFO canonical traits (4, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007034 | seropositivity measurement |
| EFO:0007035 | Chlamydia pneumoniae seropositivity |
| EFO:1001488 | influenza A (H1N1) |
| EFO:0007778 | urinary albumin to creatinine ratio |
MeSH disease descriptors (3)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D015473 | Leukemia, Promyelocytic, Acute | C04.557.337.539.275.700; C15.378.508.539.275.700 |
| D009208 | Myoepithelioma | C04.557.435.585 |
| C566951 | Deafness, Autosomal Recessive 63 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5725184 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,538 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL1232461 | MOLIBRESIB | 2 | 1,538 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs10898815 | Efficacy | 3 | Calcium channel blockers | Hypertension |
PharmGKB variants
1 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs10898815 | NUMA1 | 3 | 2.25 | 1 | Calcium channel blockers |
ChEMBL bioactivities
6 potent at pChembl≥5 of 6 total, top 6 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 9.51 | Kd | 0.308 | nM | CHEMBL3752910 |
| 9.51 | ED50 | 0.308 | nM | CHEMBL3752910 |
| 7.50 | Kd | 31.84 | nM | CHEMBL5653589 |
| 7.50 | ED50 | 31.84 | nM | CHEMBL5653589 |
| 7.22 | Kd | 60 | nM | MOLIBRESIB |
| 7.05 | IC50 | 90 | nM | MOLIBRESIB |
PubChem BioAssay actives
4 with measured affinity, of 11 total; 3 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 4-methyl-3-[(1-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148900: Binding affinity to human NUMA1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0003 | uM |
| 4-methyl-3-[(2-methyl-6-pyridin-3-ylpyrazolo[3,4-d]pyrimidin-4-yl)amino]-N-[3-(trifluoromethyl)phenyl]benzamide | 2148900: Binding affinity to human NUMA1 incubated for 45 mins by Kinobead based pull down assay | kd | 0.0318 | uM |
| 2-[(4S)-6-(4-chlorophenyl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]-N-ethylacetamide | 2179160: Binding affinity against NUMA1 (unknown origin) assessed as apparent dissociation constant incubated for 1 hr by colloidal coomassie staining based LC-MS/MS analysis | kd | 0.0600 | uM |
CTD chemical–gene interactions
66 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases methylation, affects cotreatment, decreases expression | 7 |
| bisphenol A | decreases expression, decreases methylation, increases expression | 3 |
| Particulate Matter | increases expression, affects cotreatment, decreases expression, increases abundance | 3 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression, decreases expression | 2 |
| Acetaminophen | decreases expression, increases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Nickel | increases expression | 2 |
| N’-(3-bromo-4-hydroxybenzylidene)-2-(9-oxo-10(9H)-acridinyl)acetohydrazide | affects localization | 1 |
| FR900359 | affects phosphorylation | 1 |
| bisphenol F | increases expression | 1 |
| TAK-243 | increases sumoylation | 1 |
| dicrotophos | increases expression | 1 |
| bufotalin | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| decabromobiphenyl ether | increases expression | 1 |
| trichostatin A | decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sodium arsenite | increases abundance, affects cotreatment, decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| perfluorooctanoic acid | decreases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| coumarin | decreases phosphorylation | 1 |
| beta-methylcholine | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| N-(oxo-5,6-dihydrophenanthridin-2-yl)-N,N-dimethylacetamide hydrochloride | increases metabolic processing, affects binding, decreases reaction | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| ON 01910 | affects localization | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases expression, increases response to substance | 1 |
ChEMBL screening assays
8 unique, capped per target: 8 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL5651942 | Binding | Binding affinity to human NUMA1 incubated for 45 mins by Kinobead based pull down assay | NVP-BHG712: Effects of Regioisomers on the Affinity and Selectivity toward the EPHrin Family. — ChemMedChem |
Cellosaurus cell lines
3 cell lines: 2 cancer cell line, 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A7NI | 2XSB | Cancer cell line | Female |
| CVCL_D7W7 | Ubigene A-549 NUMA1 KO | Cancer cell line | Male |
| CVCL_D9LR | Ubigene HEK293 NUMA1 KO | Transformed cell line | Female |
Clinical trials (associated diseases)
56 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00196768 | PHASE4 | UNKNOWN | Treatment Protocol for Relapsed Acute Promyelocytic Leukemia (APL) With Arsenic |
| NCT00408278 | PHASE4 | COMPLETED | Treatment of Newly Diagnosed Patients With Acute Promyelocytic Leukemia (PETHEMA LPA 2005) |
| NCT00465933 | PHASE4 | COMPLETED | Treatment of Acute Promyelocytic Leukemia With All-Trans Retinoic Acid (ATRA) and Idarubicin (AIDA) |
| NCT00504764 | PHASE4 | COMPLETED | Treatment of Relapsed Promyelocytic Leukemia With Arsenic Trioxide (ATO) |
| NCT01987297 | PHASE4 | UNKNOWN | Combined Retinoic Acid,Arsenic Trioxide and Chemo for Newly-diagnosed APL |
| NCT02020161 | PHASE4 | UNKNOWN | Clinical Guidelines for APL Treatment |
| NCT01226303 | PHASE3 | UNKNOWN | Treatment Study for Children and Adolescents With Acute Promyelocitic Leukemia |
| NCT02688140 | PHASE3 | COMPLETED | Study for Patients With Newly Diagnosed, High-risk Acute Promyelocytic Leukemia |
| NCT02899169 | PHASE3 | UNKNOWN | Treatment of Non-high-risk Acute Promyelocytic Leukemia (APL) With Realgar-Indigo Naturalis Formula (RIF) |
| NCT04175587 | PHASE3 | UNKNOWN | Randomized,International Multi-center Clinical Trial of RIF Plus RA for Non-high-risk APL |
| NCT07296445 | PHASE3 | NOT_YET_RECRUITING | A Trial to Investigate Whether Oral Arsenic Trioxide Is Similar to Intravenous Arsenic Trioxide in Pharmacokinetics, Safety, and Efficacy (LATITUDE/SDKARS-301) |
| NCT07503730 | PHASE3 | RECRUITING | Early Use of Realgar-Indigo Naturalis Formula (RIF) Combined With All-trans Retinoic Acid (ATRA) for Treating Acute Promyelocytic Leukemia (APL). |
| NCT07504458 | PHASE3 | RECRUITING | Pivotal Open-label Phase 3 Clinical Study of QTX-2101 in Adult Patients With Acute Promyelocytic Leukemia |
| NCT00413166 | PHASE2 | COMPLETED | All-trans Retinoic Acid, and Arsenic +/- Idarubicin |
| NCT00520208 | PHASE2 | COMPLETED | Safety, Efficacy, & Pharmacokinetic Study of Tamibarotene to Treat Patients With Relapsed or Refractory APL |
| NCT00670150 | PHASE2 | WITHDRAWN | New Retinoid Agent Combined With Arsenic Trioxide for Untreated Acute Promyelocytic Leukemia |
| NCT00675870 | PHASE2 | UNKNOWN | Study of NRX 195183 Therapy for Patients With Relapsed or Refractory Acute Promyelocytic Leukemia |
| NCT00907582 | PHASE2 | TERMINATED | ASCT for Relapsed APL After Molecular Remission |
| NCT01064570 | PHASE2 | UNKNOWN | AIDA 2000 Guidelines |
| NCT01253070 | PHASE2 | COMPLETED | Sorafenib Tosylate and Chemotherapy in Treating Older Patients With Acute Myeloid Leukemia |
| NCT01404949 | PHASE2 | COMPLETED | Combined Tretinoin and Arsenic Trioxide for Patients With Newly Diagnosed Acute Promyelocytic Leukemia Followed by Risk-Adapted Postremission Therapy |
| NCT01409161 | PHASE2 | RECRUITING | Tretinoin and Arsenic Trioxide With or Without Gemtuzumab Ozogamicin in Treating Patients With Previously Untreated Acute Promyelocytic Leukemia |
| NCT03624270 | PHASE2 | UNKNOWN | Oral Arsenic Trioxide for Newly Diagnosed Acute Promyelocytic Leukaemia |
| NCT04687176 | PHASE2 | RECRUITING | Frontline Oral Arsenic Trioxide for APL |
| NCT04793919 | PHASE2 | RECRUITING | Treatment Study for Children and Adolescents With Acute Promyelocytic Leukemia |
| NCT05881265 | PHASE2 | RECRUITING | Treatment of Chidamide and Venetoclax for Retinoic Acid and Arsenic Resistant Acute Promyelocytic Leukemia |
| NCT06982274 | PHASE2 | RECRUITING | Oral Arsenic With ATRA for Newly Diagnosed Patients With Acute Promyelocytic Leukemia |
| NCT03600649 | PHASE1 | UNKNOWN | Clinical Trial of SP-2577 (Seclidemstat) in Patients With Relapsed or Refractory Ewing or Ewing-related Sarcomas |
| NCT00852709 | PHASE1 | TERMINATED | Phase I Dose-Escalation Trial of Clofarabine Followed by Escalating Doses of Fractionated Cyclophosphamide in Children With Relapsed or Refractory Acute Leukemias |
| NCT00985530 | PHASE1 | TERMINATED | Tamibarotene and Arsenic Trioxide for Relapsed Acute Promyelocytic Leukemia |
| NCT01902329 | PHASE1 | COMPLETED | A Safety Study of SGN-CD33A in AML Patients |
| NCT02086773 | PHASE1 | COMPLETED | Red Cell Transfusion Goals in Patients With Acute Leukemias |
| NCT02390635 | PHASE1 | RECRUITING | PET/MRI, 18F-FDG PET/CT and Whole Body MRI in Finding Extramedullary Myeloid Leukemia in Patients With Newly Diagnosed Acute Myeloid Leukemia |
| NCT04996030 | PHASE1 | SUSPENDED | A Study for Oral SY-2101 for Participants With Acute Promyelocytic Leukemia |
| NCT06882031 | PHASE1 | COMPLETED | Evaluate the Pharmacokinetics of Oral Arsenic Trioxide Solution Under Fasting and Fed Conditions, to Compare Intravenous Arsenic Trioxide, in Acute Promyelocytic Leukemia |
| NCT05266196 | PHASE1/PHASE2 | UNKNOWN | A Rollover Protocol to Allow for Continued Access to the LSD1 Inhibitor Seclidemstat (SP-2577) |
| NCT06239272 | PHASE1/PHASE2 | RECRUITING | NRSTS2021, A Risk Adapted Study Evaluating Maintenance Pazopanib, Limited Margin, Dose-Escalated Radiation Therapy and Selinexor in Non-Rhabdomyosarcoma Soft Tissue Sarcoma (NRSTS) |
| NCT06625190 | PHASE1/PHASE2 | RECRUITING | Alpha/Beta T and B Cell Depletion With Zoledronic Acid for Solid Tumors |
| NCT06244420 | Not specified | COMPLETED | Malignant Myoepithelioma of Bone and Soft Tissues: Diagnostic Imaging and Histology in Relation to Prognosis |
| NCT00517712 | PHASE2/PHASE3 | UNKNOWN | Single Agent Arsenic Trioxide in the Treatment of Newly Diagnosed Acute Promyelocytic Leukemia |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute promyelocytic leukemia, autosomal recessive nonsyndromic hearing loss 63