NUP214
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Also known as CAINCAND9S46EN214
Summary
NUP214 (nucleoporin 214, HGNC:8064) is a protein-coding gene on chromosome 9q34.13, encoding Nuclear pore complex protein Nup214 (P35658). Part of the nuclear pore complex. It is a common-essential gene (DepMap: required in 99.4% of cancer cell lines).
The nuclear pore complex is a massive structure that extends across the nuclear envelope, forming a gateway that regulates the flow of macromolecules between the nucleus and the cytoplasm. Nucleoporins are the main components of the nuclear pore complex in eukaryotic cells. This gene is a member of the FG-repeat-containing nucleoporins. The protein encoded by this gene is localized to the cytoplasmic face of the nuclear pore complex where it is required for proper cell cycle progression and nucleocytoplasmic transport. The 3’ portion of this gene forms a fusion gene with the DEK gene on chromosome 6 in a t(6,9) translocation associated with acute myeloid leukemia and myelodysplastic syndrome. Alternative splicing of this gene results in multiple transcript variants encoding different isoforms.
Source: NCBI Gene 8021 — RefSeq curated summary.
At a glance
- Gene–disease (curated): encephalopathy, acute, infection-induced, susceptibility to, 9 (Strong, GenCC)
- GWAS associations: 1
- Clinical variants (ClinVar): 475 total — 2 pathogenic, 6 likely-pathogenic
- Phenotypes (HPO): 39
- Cancer driver (intOGen): activating (oncogene-like) across 2 cancer types
- Cancer dependency (DepMap): dependent in 99.4% of screened cell lines (common-essential)
- MANE Select transcript:
NM_005085
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8064 |
| Approved symbol | NUP214 |
| Name | nucleoporin 214 |
| Location | 9q34.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CAIN, CAN, D9S46E, N214 |
| Ensembl gene | ENSG00000126883 |
| Ensembl biotype | protein_coding |
| OMIM | 114350 |
| Entrez | 8021 |
Gene structure
Transcript identifiers
Ensembl transcripts: 54 — 27 protein_coding, 13 retained_intron, 9 protein_coding_CDS_not_defined, 5 nonsense_mediated_decay
ENST00000359428, ENST00000411637, ENST00000453861, ENST00000465486, ENST00000470765, ENST00000476004, ENST00000483497, ENST00000489260, ENST00000496921, ENST00000498010, ENST00000524578, ENST00000525384, ENST00000525561, ENST00000525980, ENST00000526346, ENST00000526412, ENST00000528114, ENST00000528406, ENST00000529286, ENST00000530491, ENST00000530630, ENST00000530843, ENST00000530863, ENST00000531584, ENST00000531600, ENST00000531929, ENST00000650694, ENST00000651022, ENST00000651334, ENST00000651639, ENST00000652454, ENST00000695493, ENST00000695494, ENST00000695495, ENST00000695496, ENST00000695497, ENST00000695498, ENST00000695499, ENST00000695500, ENST00000695501, ENST00000897205, ENST00000897206, ENST00000897207, ENST00000897208, ENST00000897209, ENST00000897210, ENST00000922158, ENST00000922159, ENST00000922160, ENST00000922161, ENST00000922162, ENST00000922163, ENST00000922164, ENST00000922165
RefSeq mRNA: 3 — MANE Select: NM_005085
NM_001318324, NM_001318325, NM_005085
CCDS: CCDS6940, CCDS83429, CCDS83430
Canonical transcript exons
ENST00000359428 — 36 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000868186 | 131144280 | 131144754 |
| ENSE00000984241 | 131146129 | 131146304 |
| ENSE00001621435 | 131147490 | 131147584 |
| ENSE00003459993 | 131187289 | 131187364 |
| ENSE00003474296 | 131164061 | 131164144 |
| ENSE00003535108 | 131162991 | 131163173 |
| ENSE00003541404 | 131150324 | 131150410 |
| ENSE00003556290 | 131192208 | 131192292 |
| ENSE00003571654 | 131195233 | 131195294 |
| ENSE00003572886 | 131163870 | 131163955 |
| ENSE00003584978 | 131189053 | 131189131 |
| ENSE00003586686 | 131159383 | 131159486 |
| ENSE00003623729 | 131175460 | 131175621 |
| ENSE00003624572 | 131150616 | 131150765 |
| ENSE00003647269 | 131151736 | 131151894 |
| ENSE00003650187 | 131178311 | 131178410 |
| ENSE00003686584 | 131174055 | 131174318 |
| ENSE00003964007 | 131197216 | 131199015 |
| ENSE00003964008 | 131130766 | 131130836 |
| ENSE00003964009 | 131140549 | 131140710 |
| ENSE00003964010 | 131233454 | 131234663 |
| ENSE00003964011 | 131127524 | 131127719 |
| ENSE00003964012 | 131215212 | 131215368 |
| ENSE00003964016 | 131132596 | 131132659 |
| ENSE00003964017 | 131139281 | 131139407 |
| ENSE00003964020 | 131201647 | 131201717 |
| ENSE00003964021 | 131133106 | 131133209 |
| ENSE00003964025 | 131135940 | 131136006 |
| ENSE00003964027 | 131230630 | 131230769 |
| ENSE00003964031 | 131125586 | 131125749 |
| ENSE00003964032 | 131232284 | 131232308 |
| ENSE00003964035 | 131134898 | 131135004 |
| ENSE00003964036 | 131222778 | 131222930 |
| ENSE00003964037 | 131128332 | 131128483 |
| ENSE00003964038 | 131129279 | 131129477 |
| ENSE00003964039 | 131228160 | 131228331 |
Expression profiles
Bgee: expression breadth ubiquitous, 246 present calls, max score 98.03.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 44.1370 / max 637.1169, expressed in 1819 samples.
FANTOM5 promoters (22 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 99062 | 36.1701 | 1817 |
| 99090 | 4.2743 | 337 |
| 99082 | 0.8674 | 329 |
| 99087 | 0.7091 | 219 |
| 99084 | 0.5573 | 252 |
| 99063 | 0.4977 | 220 |
| 99088 | 0.3656 | 158 |
| 99066 | 0.1443 | 41 |
| 99068 | 0.1127 | 34 |
| 99067 | 0.0990 | 29 |
Top tissues by expression
280 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| left testis | UBERON:0004533 | 98.03 | gold quality |
| right testis | UBERON:0004534 | 97.91 | gold quality |
| monocyte | CL:0000576 | 97.56 | gold quality |
| granulocyte | CL:0000094 | 97.41 | gold quality |
| leukocyte | CL:0000738 | 97.34 | gold quality |
| mononuclear cell | CL:0000842 | 97.27 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 97.22 | gold quality |
| colonic epithelium | UBERON:0000397 | 97.14 | gold quality |
| testis | UBERON:0000473 | 96.70 | gold quality |
| blood | UBERON:0000178 | 96.63 | gold quality |
| bone marrow cell | CL:0002092 | 95.15 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 95.05 | gold quality |
| sural nerve | UBERON:0015488 | 94.55 | gold quality |
| metanephros cortex | UBERON:0010533 | 94.42 | gold quality |
| spleen | UBERON:0002106 | 94.11 | gold quality |
| ventricular zone | UBERON:0003053 | 94.02 | gold quality |
| bone marrow | UBERON:0002371 | 92.85 | gold quality |
| ganglionic eminence | UBERON:0004023 | 92.72 | gold quality |
| periodontal ligament | UBERON:0008266 | 92.59 | gold quality |
| apex of heart | UBERON:0002098 | 92.21 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 91.49 | gold quality |
| primordial germ cell in gonad | CL:0000670 ∩ UBERON:0000991 | 91.30 | gold quality |
| skin of leg | UBERON:0001511 | 91.19 | gold quality |
| cortical plate | UBERON:0005343 | 91.09 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 90.81 | gold quality |
| sperm | CL:0000019 | 90.74 | gold quality |
| right uterine tube | UBERON:0001302 | 90.58 | gold quality |
| skin of abdomen | UBERON:0001416 | 90.33 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 90.29 | gold quality |
| body of pancreas | UBERON:0001150 | 90.29 | gold quality |
Single-cell (SCXA)
Detected in 5 experiment(s), a significant marker in 3.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-6701 | yes | 29.23 |
| E-CURD-112 | yes | 23.62 |
| E-ANND-3 | yes | 5.94 |
| E-CURD-135 | no | 603.65 |
| E-GEOD-109979 | no | 352.48 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR, JUN, NFATC1, NFATC4, NFIC, TFAP2A, TP53
miRNA regulators (miRDB)
52 targeting NUP214, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6772-5P | 99.94 | 67.01 | 577 |
| HSA-MIR-10395-5P | 99.86 | 67.35 | 676 |
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-548AR-3P | 99.85 | 71.26 | 3889 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-4495 | 99.82 | 72.08 | 3080 |
| HSA-MIR-548AZ-3P | 99.82 | 70.56 | 3549 |
| HSA-MIR-548BC | 99.82 | 70.61 | 3524 |
| HSA-MIR-548E-3P | 99.82 | 70.59 | 3514 |
| HSA-MIR-548F-3P | 99.82 | 70.59 | 3540 |
| HSA-MIR-3133 | 99.81 | 70.92 | 3506 |
| HSA-MIR-548A-3P | 99.76 | 70.58 | 3524 |
| HSA-MIR-6764-5P | 99.75 | 67.89 | 2304 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-29B-2-5P | 99.67 | 68.98 | 1726 |
| HSA-MIR-6762-3P | 99.66 | 66.94 | 1188 |
| HSA-MIR-1915-3P | 99.58 | 66.79 | 1988 |
| HSA-MIR-6727-3P | 99.49 | 65.92 | 1333 |
| HSA-MIR-217-5P | 99.49 | 69.93 | 1419 |
| HSA-MIR-6740-3P | 99.48 | 68.49 | 1392 |
| HSA-MIR-20A-3P | 99.44 | 69.10 | 1575 |
| HSA-MIR-4722-3P | 99.35 | 65.22 | 1099 |
| HSA-MIR-520F-5P | 99.34 | 70.40 | 1632 |
| HSA-MIR-3692-5P | 99.29 | 67.04 | 1421 |
| HSA-MIR-3064-5P | 99.26 | 66.13 | 1497 |
| HSA-MIR-3085-3P | 99.26 | 66.16 | 1490 |
| HSA-MIR-6504-5P | 99.26 | 65.95 | 1487 |
| HSA-MIR-7974 | 99.24 | 65.48 | 1137 |
| HSA-MIR-196A-3P | 99.19 | 67.34 | 1204 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 99.4% of screened cell lines, common-essential.
Literature-anchored findings (GeneRIF, showing 40)
- Smad2 nucleocytoplasmic shuttling by nucleoporins CAN/Nup214 and Nup153 feeds TGFbeta signaling complexes in the cytoplasm and nucleus. (PMID:12191473)
- A surface hydrophobic corridor within the MH2 domain of Smad3 is critical for association with CAN/Nup214 and nuclear import, whereas Smad4 interaction with CAN/Nup214, and nuclear import requires structural elements present only in the full-length Smad4 (PMID:12917407)
- leukemia SET-CAN fusion protein inhibited proliferation of U937 cells, most likely by interfering with hCRM1, but it also partially blocks differentiation (PMID:14671643)
- Nup214 has a role in regulating TTP localization (PMID:14766228)
- NUP214-ABL1 expression defines a new subgroup of individuals with T-ALL (PMID:15361874)
- Nup214 domain-specific localization by immunoelectron microscopy. Transport studies show that the spatial distribution of the FG-repeat domains of both Nup153 and Nup214 shifts in a transport-dependent manner. (PMID:16045929)
- the Nup214-Nup88 nucleoporin subcomplex is required for CRM1-mediated 60 S preribosomal nuclear export (PMID:16675447)
- The Nup214/Nup88 complex is required for efficient CRM1-mediated transport, supporting a model involving a high-affinity binding site for CRM1 at Nup214 in the terminal steps of export. (PMID:16943420)
- A mechanism is proposed by which the C-terminal peptide extension is involved in nuclear pore complex assembly. (PMID:17264208)
- TAF-Ialpha/CAN and TAF-Ibeta/CAN fusion transcripts are generated by chromosome 9q34 deletion in acute myeloid leukemia (PMID:17296573)
- Impairment of erythroid and megakaryocytic differentiation by a leukemia-associated and t(9;9)-derived product, SET/TAF-IBeta-CAN/Nup214. (PMID:17620317)
- Set/TAF-Ibeta acts as a ligand-activated GR-responsive transcriptional repressor, while Set-Can does not retain physiologic responsiveness to ligand-bound glucocorticoid receptor. (PMID:18096310)
- SET-NUP214 binds in the promoter regions of specific HOXA genes, where it interacts with CRM1 and DOT1L, which may transcriptionally activate specific members of the HOXA cluster. (PMID:18299449)
- NUP214-ABL1 fusion is unique because of its requisite localization to the nuclear pore complex for its transforming potential. (PMID:18614052)
- a thorough biochemical comparative analysis of NUP214-ABL1 and BCR-ABL1 show that, despite their common tyrosine kinase domain, the two fusion proteins differ in many critical catalytic properties (PMID:18784740)
- FISH revealed a heterogeneous pattern of NUP214-ABL1 amplification. NUP214-ABL1 gene requires amplification for oncogenicity; it is part of a multistep process of leukemogenesis; and it can be a late event present only in subpopulations (PMID:18923437)
- Cell lines LOUCY and MEGAL express the recently described SET-NUP214 fusion gene. (PMID:19166587)
- Using in vitro assays, the authors demonstrate that NUP214 decreases both the RNA binding and ATPase activities of DBP5. (PMID:19219046)
- These results indicate that CAN/Nup214 interacts with VDR and modulates its function as a transcription factor. (PMID:19229862)
- CAN/Nup214 is a nuclear receptor for the herpesvirus capsid. (PMID:19386703)
- Oxidative stress up-regulated the binding of Crm1 to Ran and affected multiple repeat-containing nucleoporins by changing their localization, phosphorylation, O-glycosylation, or interaction with other transport components. (PMID:19828735)
- NUP214-ABL1 positive T-cell acute lymphoblastic leukemia patient shows an initial favorable response to imatinib therapy post relapse (PMID:21489623)
- Used MALDI-TOF MS 40-plex assay for testing 40 loci within 21 high-ranking breast cancer CAN-genes. No mutation could be found in 6 cell lines. A single breast cancer tissue sample showed heterozygosity at locus c.5834G>A within the ZFYVE26 gene. (PMID:21691751)
- Data describe the relatively high incidence of SET-NUP214 rearrangement in adult T-ALLs, and demonstrate comprehensive clinical, phenotypic, and genetic characteristics of this entity. (PMID:21720744)
- Nucleoporin p62 (NUP62) and nucleoporin 214 (NUP214) are differentially distributed between nuclear pore complexes. (PMID:22558357)
- Several phenylalanine-glycine motives in the nucleoporin Nup214 are essential for binding of the nuclear export receptor CRM1. (PMID:23264634)
- The expression of endogenous Nup214 is significantly down-regulated by the reverse inserted lentiviral promoter (PMID:23831628)
- NUP214-ABL1-mediated cell proliferation in T-cell acute lymphoblastic leukemia is dependent on the LCK kinase and various interacting proteins. (PMID:23872305)
- the expression of the fusion gene DEK-NUP214 leads to increased cellular proliferation. We show that this is dependent on upregulation of the signal transduction protein mTOR with subsequent effects on protein synthesis and glucose metabolism. (PMID:24073922)
- t(6;9)/DEK-NUP214 represents a unique subtype of acute myeloid leukemia with a high risk of relapse. (PMID:24441146)
- When compared with SET-NUP214-negative patients, SET-NUP214-positive patients showed a significantly higher rate of corticosteroid resistance (91% vs 44%; P = .003) and chemotherapy resistance (100% vs 44%; P = .0001). (PMID:24449214)
- Both in vitro hexon binding and in vivo nuclear import of the adenovirus genome were strongly reduced in Nup214-depleted cells suggesting that Nup214 is a major binding site of adenovirus during infection. (PMID:25410864)
- We have identified NUP214, a member of the massive nuclear pore complex, as a novel miR-133b target. (PMID:25743594)
- SQSTM1-Nup214, although mostly cytoplasmic, also forms nuclear bodies and inhibits nuclear protein but not poly(A)(+) RNA export. (PMID:27613868)
- RNA-sequencing proved to be a valuable tool for the detection of a fusion of genes DEK and NUP214 in a leukemia that showed cryptic cytogenetic rearrangement of chromosome band 9q34. (PMID:29109093)
- 19 patients with neurodevelopmental disorders harboring a rare deletion inherited from a healthy parent were investigated by whole-exome sequencing to search for SNV on the contralateral segment. This strategy allowed us to identify a candidate variant in two patients in the NUP214 and NCOR1 genes. (PMID:29483668)
- oncogenic kinase NUP214-ABL1, through its downstream effector STAT5, directly cooperates with TLX1 at the transcriptional level. (PMID:30107177)
- we propose that while NUP214 complete deficiency may be lethal in humans, partial deficiency results in a novel autosomal recessive disorder characterized by severe encephalopathy and early death. (PMID:30758658)
- Pathogenic Variants in NUP214 Cause “Plugged” Nuclear Pore Channels and Acute Febrile Encephalopathy. (PMID:31178128)
- Loss of Nup214 inhibited nuclear export of recombination signal-binding protein for immunoglobulin kappaJ region (RBP-J), the DNA-binding component of the Notch pathway. NUP214 fusion proteins, causative for certain cases of T-cell acute lymphatic leukemia, potentially contribute to tumorigenesis via a Notch-dependent mechanism. (PMID:31186352)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| mus_musculus | Nup214 | ENSMUSG00000001855 |
| rattus_norvegicus | Nup214 | ENSRNOG00000023393 |
| drosophila_melanogaster | Nup153 | FBGN0061200 |
Paralogs (6): NUP153 (ENSG00000124789), POM121L2 (ENSG00000158553), NPAP1 (ENSG00000185823), POM121 (ENSG00000196313), POM121L12 (ENSG00000221900), POM121C (ENSG00000272391)
Protein
Protein identifiers
Nuclear pore complex protein Nup214 — P35658 (reviewed: P35658)
Alternative names: 214 kDa nucleoporin, Nucleoporin Nup214, Protein CAN
All UniProt accessions (17): P35658, A0A494BZU9, A0A494C0J0, A0A494C0Y1, A0A494C104, A0A494C1F2, A0A8Q3SHZ4, A0A8Q3WLX1, B7ZAV2, E9PKD2, E9PS86, H0Y837, H0YDH2, H0YDI2, H0YDS4, H0YED3, H0YF36
UniProt curated annotations — full annotation on UniProt →
Function. Part of the nuclear pore complex. Has a critical role in nucleocytoplasmic transport. May serve as a docking site in the receptor-mediated import of substrates across the nuclear pore complex. (Microbial infection) Required for capsid disassembly of the human adenovirus 5 (HadV-5) leading to release of the viral genome to the nucleus (in vitro).
Subunit / interactions. Homodimer. Part of the nuclear pore complex (NPC). Interacts with NUP88. Interacts with ZFP36; this interaction increases upon lipopolysaccharide (LPS) stimulation. Interacts with DDX19. Interacts with XPO1. Interacts with XPO5. (Microbial infection) Interacts with human herpes virus 1 (HHV-1) protein UL25; this interaction might be essential to the capsid docking onto the host nuclear pore. (Microbial infection) Interacts (via N-terminus) with human adenovirus 5 (HAdV-5) protein L3 (hexon); this interaction might be essential for the release of the virus genome to the nucleus.
Subcellular location. Nucleus. Nuclear pore complex.
Tissue specificity. Expressed in thymus, spleen, bone marrow, kidney, brain and testis, but hardly in all other tissues or in whole embryos during development.
Post-translational modifications. Probably glycosylated as it reacts with wheat germ agglutinin (WGA).
Disease relevance. A chromosomal aberration involving NUP214 is found in a subset of acute myeloid leukemia (AML); also known as acute non-lymphocytic leukemia. Translocation t(6;9)(p23;q34) with DEK. It results in the formation of a DEK-CAN fusion gene. A chromosomal aberration involving NUP214 is found in some cases of acute undifferentiated leukemia (AUL). Translocation t(6;9)(q21;q34.1) with SET. Encephalopathy, acute, infection-induced, 9 (IIAE9) [MIM:618426] An autosomal recessive disorder characterized by infancy-onset of episodic neurodevelopmental regression in association with infection-induced febrile illness. Clinical features include poor overall growth, seizures, myoclonic jerks, microcephaly, ataxia, and cerebellar atrophy. Disease susceptibility is associated with variants affecting the gene represented in this entry. Chromosomal aberrations involving NUP214 are found in acute lymphoblastic leukemia. Translocation t(9;9)(q34;q34) with ABL1. Translocation t(5;9)(q35;q34) with SQSTM1.
Domain organisation. Contains FG repeats. FG repeats are interaction sites for karyopherins (importins, exportins) and form probably an affinity gradient, guiding the transport proteins unidirectionally with their cargo through the NPC. FG repeat regions are highly flexible and lack ordered secondary structure. The overall conservation of FG repeats regarding exact sequence, spacing, and repeat unit length is limited. The beta-propeller contains long interblade connector loops, and mediates interaction with DDX19B.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P35658-1 | 1 | yes |
| P35658-2 | 2 | |
| P35658-3 | 3 | |
| P35658-4 | 4 | |
| P35658-5 | 5 |
RefSeq proteins (3): NP_001305253, NP_001305254, NP_005076* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR001680 | WD40_rpt | Repeat |
| IPR015943 | WD40/YVTN_repeat-like_dom_sf | Homologous_superfamily |
| IPR026054 | Nucleoporin | Family |
| IPR039462 | Nup159/Nup146_N | Domain |
| IPR041553 | Nup214_FG | Domain |
Pfam: PF16755, PF18617
UniProt features (199 total): repeat 51, strand 38, modified residue 32, region of interest 19, compositionally biased region 19, sequence variant 8, helix 8, site 7, splice variant 4, sequence conflict 4, turn 3, mutagenesis site 2, initiator methionine 1, chain 1, cross-link 1, coiled-coil region 1
Structure
Experimental structures (PDB)
7 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 2OIT | X-RAY DIFFRACTION | 1.65 |
| 3FMO | X-RAY DIFFRACTION | 2.51 |
| 3FHC | X-RAY DIFFRACTION | 2.8 |
| 5DIS | X-RAY DIFFRACTION | 2.85 |
| 3FMP | X-RAY DIFFRACTION | 3.19 |
| 7R5K | ELECTRON MICROSCOPY | 12 |
| 7R5J | ELECTRON MICROSCOPY | 50 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P35658-F1 | 50.85 | 0.18 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (7): 444–445 (breakpoint for translocation to form the nup214-abl1 fusion protein); 812–813 (breakpoint); 1840–1841 (breakpoint for translocation to form the nup214-abl1 fusion protein); 1916–1917 (breakpoint for translocation to form the nup214-abl1 fusion protein); 1967–1968 (breakpoint for translocation to form the nup214-abl1 fusion protein); 1967–1968 (breakpoint for translocation to form the nup214-sqstm1 fusion protein); 2071–2072 (breakpoint for translocation to form the nup214-abl1 fusion protein)
Post-translational modifications (33): 30, 416, 421, 430, 433, 434, 437, 439, 651, 657, 666, 670, 678, 760, 940, 970, 974, 989, 1021, 1023 …
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 353 | reduced binding to ddx19b. |
| 359 | impairs interaction with ddx19b. |
Function
Pathways and Gene Ontology
Reactome pathways
32 pathways
| ID | Pathway |
|---|---|
| R-HSA-1169408 | ISG15 antiviral mechanism |
| R-HSA-159227 | Transport of the SLBP independent Mature mRNA |
| R-HSA-159230 | Transport of the SLBP Dependant Mature mRNA |
| R-HSA-159231 | Transport of Mature mRNA Derived from an Intronless Transcript |
| R-HSA-159236 | Transport of Mature mRNA derived from an Intron-Containing Transcript |
| R-HSA-165054 | Rev-mediated nuclear export of HIV RNA |
| R-HSA-168271 | Transport of Ribonucleoproteins into the Host Nucleus |
| R-HSA-168276 | NS1 Mediated Effects on Host Pathways |
| R-HSA-168325 | Viral Messenger RNA Synthesis |
| R-HSA-168333 | NEP/NS2 Interacts with the Cellular Export Machinery |
| R-HSA-170822 | Regulation of Glucokinase by Glucokinase Regulatory Protein |
| R-HSA-180746 | Nuclear import of Rev protein |
| R-HSA-180910 | Vpr-mediated nuclear import of PICs |
| R-HSA-1855170 | IPs transport between nucleus and cytosol |
| R-HSA-1855196 | IP3 and IP4 transport between cytosol and nucleus |
| R-HSA-1855229 | IP6 and IP7 transport between cytosol and nucleus |
| R-HSA-191859 | snRNP Assembly |
| R-HSA-3108214 | SUMOylation of DNA damage response and repair proteins |
| R-HSA-3232142 | SUMOylation of ubiquitinylation proteins |
| R-HSA-3301854 | Nuclear Pore Complex (NPC) Disassembly |
| R-HSA-3371453 | Regulation of HSF1-mediated heat shock response |
| R-HSA-4085377 | SUMOylation of SUMOylation proteins |
| R-HSA-450520 | HuR (ELAVL1) binds and stabilizes mRNA |
| R-HSA-4551638 | SUMOylation of chromatin organization proteins |
| R-HSA-4570464 | SUMOylation of RNA binding proteins |
| R-HSA-4615885 | SUMOylation of DNA replication proteins |
| R-HSA-5619107 | Defective TPR may confer susceptibility towards thyroid papillary carcinoma (TPC) |
| R-HSA-6784531 | tRNA processing in the nucleus |
| R-HSA-9609690 | HCMV Early Events |
| R-HSA-9610379 | HCMV Late Events |
MSigDB gene sets: 316 (showing top):
REACTOME_INTERACTIONS_OF_VPR_WITH_HOST_CELLULAR_PROTEINS, GOBP_INTRACELLULAR_PROTEIN_TRANSPORT, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, REACTOME_VIRAL_MESSENGER_RNA_SYNTHESIS, THEILGAARD_NEUTROPHIL_AT_SKIN_WOUND_DN, PID_NFAT_3PATHWAY, CREBP1_Q2, GOBP_ESTABLISHMENT_OF_PROTEIN_LOCALIZATION_TO_ORGANELLE, CREB_Q4, GOBP_NUCLEAR_TRANSPORT, REACTOME_HIV_INFECTION, GOBP_REGULATION_OF_NUCLEOCYTOPLASMIC_TRANSPORT, BLALOCK_ALZHEIMERS_DISEASE_UP, GOBP_REGULATION_OF_CELLULAR_LOCALIZATION, REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
GO Biological Process (10): RNA export from nucleus (GO:0006405), mRNA export from nucleus (GO:0006406), protein import into nucleus (GO:0006606), protein export from nucleus (GO:0006611), nucleocytoplasmic transport (GO:0006913), regulation of nucleocytoplasmic transport (GO:0046822), regulation of cell cycle (GO:0051726), intracellular protein transport (GO:0006886), protein transport (GO:0015031), mRNA transport (GO:0051028)
GO Molecular Function (4): nuclear export signal receptor activity (GO:0005049), nuclear localization sequence binding (GO:0008139), structural constituent of nuclear pore (GO:0017056), protein binding (GO:0005515)
GO Cellular Component (6): nuclear envelope (GO:0005635), nuclear pore (GO:0005643), nucleoplasm (GO:0005654), cytosol (GO:0005829), cytoplasmic side of nuclear pore (GO:1990876), nucleus (GO:0005634)
Reactome top-level categories
Rollup of top-14 pathways:
| Category | Pathways |
|---|---|
| Transport of Mature mRNAs Derived from Intronless Transcripts | 3 |
| Inositol phosphate metabolism | 3 |
| Interactions of Rev with host cellular proteins | 2 |
| Influenza Infection | 2 |
| SUMO E3 ligases SUMOylate target proteins | 2 |
| Antimicrobial mechanism of IFN-stimulated genes | 1 |
| Transport of Mature Transcript to Cytoplasm | 1 |
| Late Phase of HIV Life Cycle | 1 |
| Influenza Viral RNA Transcription and Replication | 1 |
| Export of Viral Ribonucleoproteins from Nucleus | 1 |
| Glycolysis | 1 |
| Interactions of Vpr with host cellular proteins | 1 |
| Metabolism of non-coding RNA | 1 |
| Nuclear Envelope Breakdown | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| nuclear export | 3 |
| cellular anatomical structure | 3 |
| RNA transport | 2 |
| intracellular protein transport | 2 |
| nucleocytoplasmic transport | 2 |
| intracellular protein localization | 2 |
| nuclear pore | 2 |
| RNA export from nucleus | 1 |
| gene expression | 1 |
| mRNA transport | 1 |
| protein localization to nucleus | 1 |
| import into nucleus | 1 |
| establishment of protein localization to organelle | 1 |
| nuclear transport | 1 |
| regulation of intracellular transport | 1 |
| cell cycle | 1 |
| regulation of cellular process | 1 |
| protein transport | 1 |
| intracellular transport | 1 |
| transport | 1 |
| establishment of protein localization | 1 |
| nucleocytoplasmic carrier activity | 1 |
| signal sequence receptor activity | 1 |
| structural molecule activity | 1 |
| binding | 1 |
| nucleus | 1 |
| endomembrane system | 1 |
| organelle envelope | 1 |
| nuclear envelope | 1 |
| nuclear protein-containing complex | 1 |
| nuclear lumen | 1 |
| cytoplasm | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
2464 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| NUP214 | NUP88 | Q99567 | 998 |
| NUP214 | RANBP2 | P49792 | 997 |
| NUP214 | RGPD1 | P0C839 | 996 |
| NUP214 | XPO1 | O14980 | 991 |
| NUP214 | NUP62 | P37198 | 991 |
| NUP214 | DEK | P35659 | 928 |
| NUP214 | GLE1 | Q53GS7 | 924 |
| NUP214 | NUP107 | P57740 | 919 |
| NUP214 | NUP133 | Q8WUM0 | 918 |
| NUP214 | ABL1 | P00519 | 906 |
| NUP214 | NXF1 | Q9UBU9 | 903 |
| NUP214 | NXT1 | Q9UKK6 | 870 |
| NUP214 | TLX1 | P31314 | 855 |
| NUP214 | NUP54 | Q7Z3B4 | 852 |
| NUP214 | TLX3 | O43711 | 848 |
IntAct
132 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| DDX19A | MIF4GD | psi-mi:“MI:0914”(association) | 0.860 |
| NXF1 | NUP214 | psi-mi:“MI:0914”(association) | 0.810 |
| NUP214 | NXF1 | psi-mi:“MI:0407”(direct interaction) | 0.810 |
| NUP214 | NUP88 | psi-mi:“MI:0915”(physical association) | 0.740 |
| NUP88 | NUP214 | psi-mi:“MI:0914”(association) | 0.740 |
| rep | GTF2F2 | psi-mi:“MI:0914”(association) | 0.730 |
| CFTR | ESYT2 | psi-mi:“MI:2364”(proximity) | 0.710 |
| RAN | RGPD8 | psi-mi:“MI:0914”(association) | 0.640 |
| KPNB1 | POM121C | psi-mi:“MI:0914”(association) | 0.530 |
| RAN | NEMP2 | psi-mi:“MI:0914”(association) | 0.530 |
| NUP62 | RGPD8 | psi-mi:“MI:0914”(association) | 0.530 |
| NXF1 | CASC3 | psi-mi:“MI:0914”(association) | 0.530 |
| G3BP2 | NUP214 | psi-mi:“MI:0914”(association) | 0.530 |
| EMILIN1 | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| NUP88 | XPO1 | psi-mi:“MI:0914”(association) | 0.530 |
| CLEC11A | VWA8 | psi-mi:“MI:0914”(association) | 0.530 |
| DDX21 | MED19 | psi-mi:“MI:2364”(proximity) | 0.480 |
| TSG101 | NUP214 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| Nup214 | OGT | psi-mi:“MI:0915”(physical association) | 0.400 |
| Plk1 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| NUP214 | PA | psi-mi:“MI:0915”(physical association) | 0.370 |
| NS | NUP214 | psi-mi:“MI:0915”(physical association) | 0.370 |
| NUP214 | NS2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| NUP214 | NS | psi-mi:“MI:0915”(physical association) | 0.370 |
BioGRID (311): NUP214 (Affinity Capture-MS), NUP214 (Affinity Capture-MS), NUP214 (Reconstituted Complex), NUP214 (Affinity Capture-MS), NUP214 (Affinity Capture-MS), NUP214 (Affinity Capture-MS), NUP214 (Affinity Capture-MS), NUP214 (Affinity Capture-MS), CFL1 (Co-fractionation), CSRP1 (Co-fractionation), DYNC1LI1 (Co-fractionation), NUP62 (Co-fractionation), NUP88 (Co-fractionation), TRIM28 (Co-fractionation), TXNDC9 (Co-fractionation)
ESM2 similar proteins: A0JN62, A2RT67, A2RUS2, B1H2P5, D4ACE5, F1MDL2, F1QEB7, H2LP95, O15259, O75161, P35658, P59240, Q059U7, Q28CB1, Q28DG8, Q28DH9, Q29RL0, Q3TLI0, Q4AC94, Q4VX76, Q52KB6, Q5SPC5, Q68CZ1, Q6DDI6, Q6DDX8, Q6DEY8, Q6NXY1, Q7TSG1, Q86UW7, Q8BYR5, Q8CG73, Q8IY22, Q8IZC4, Q8K1X1, Q8N392, Q8N5R6, Q8N960, Q8TDW5, Q96DN5, Q96KN7
Diamond homologs: P35658, Q80U93
SIGNOR signaling
4 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NUP214 | up-regulates | SMAD3 | binding |
| NUP214 | up-regulates | SMAD4 | binding |
| NUP214 | “up-regulates activity” | SMAD3/SMAD4 | relocalization |
| NUP214 | “form complex” | NPC | binding |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 162 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Rev-mediated nuclear export of HIV RNA | 7 | 21.8× | 2e-05 |
| NEP/NS2 Interacts with the Cellular Export Machinery | 6 | 20.4× | 1e-04 |
| Nuclear import of Rev protein | 6 | 19.8× | 1e-04 |
| Transport of Ribonucleoproteins into the Host Nucleus | 5 | 17.5× | 1e-03 |
| Transport of the SLBP independent Mature mRNA | 5 | 16.0× | 1e-03 |
| Transport of the SLBP Dependant Mature mRNA | 5 | 15.6× | 1e-03 |
| Nuclear Pore Complex (NPC) Disassembly | 5 | 15.1× | 1e-03 |
| NS1 Mediated Effects on Host Pathways | 5 | 14.0× | 2e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| poly(A)+ mRNA export from nucleus | 5 | 25.0× | 5e-04 |
| mRNA export from nucleus | 7 | 15.3× | 3e-04 |
| nucleocytoplasmic transport | 5 | 14.5× | 4e-03 |
| mRNA transport | 7 | 13.7× | 4e-04 |
| protein import into nucleus | 7 | 7.5× | 5e-03 |
| protein phosphorylation | 10 | 5.0× | 4e-03 |
Disease & clinical
Cancer significance
From intOGen — cancer-driver classification: activating (oncogene-like) across 2 cancer types — PRCC, SIC.
Clinical variants and AI predictions
ClinVar
475 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 6 |
| Uncertain significance | 344 |
| Likely benign | 49 |
| Benign | 12 |
Top pathogenic / likely-pathogenic (8)
| Variant ID | HGVS | Classification |
|---|---|---|
| 3375131 | NM_005085.4(NUP214):c.1926dup (p.Val643fs) | Pathogenic |
| 3375390 | NM_005085.4(NUP214):c.2939_2943dup (p.Asp982fs) | Pathogenic |
| 1711883 | NM_005085.4(NUP214):c.5773_5774del (p.Ser1925fs) | Likely pathogenic |
| 2500761 | NM_005085.4(NUP214):c.929T>C (p.Ile310Thr) | Likely pathogenic |
| 2504015 | NM_005085.4(NUP214):c.4828G>T (p.Glu1610Ter) | Likely pathogenic |
| 4075505 | NM_005085.4(NUP214):c.5472del (p.Ala1825fs) | Likely pathogenic |
| 431698 | NM_005085.4(NUP214):c.5521+10del | Likely pathogenic |
| 634924 | NM_005085.4(NUP214):c.1159C>T (p.Pro387Ser) | Likely pathogenic |
SpliceAI
5246 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:131125745:TGAAG:T | donor_loss | 1.0000 |
| 9:131125747:AAG:A | donor_loss | 1.0000 |
| 9:131125748:AGG:A | donor_loss | 1.0000 |
| 9:131125749:GGTCA:G | donor_loss | 1.0000 |
| 9:131125750:GTCAG:G | donor_loss | 1.0000 |
| 9:131125751:T:G | donor_loss | 1.0000 |
| 9:131127508:T:A | acceptor_gain | 1.0000 |
| 9:131127517:A:AG | acceptor_gain | 1.0000 |
| 9:131127518:C:G | acceptor_gain | 1.0000 |
| 9:131127519:AACAG:A | acceptor_gain | 1.0000 |
| 9:131127520:A:G | acceptor_gain | 1.0000 |
| 9:131127522:A:AG | acceptor_gain | 1.0000 |
| 9:131127522:AG:A | acceptor_gain | 1.0000 |
| 9:131127523:G:GA | acceptor_gain | 1.0000 |
| 9:131127523:GG:G | acceptor_gain | 1.0000 |
| 9:131127523:GGA:G | acceptor_gain | 1.0000 |
| 9:131127523:GGAT:G | acceptor_gain | 1.0000 |
| 9:131127523:GGATT:G | acceptor_gain | 1.0000 |
| 9:131127715:AATAG:A | donor_gain | 1.0000 |
| 9:131127716:ATAG:A | donor_gain | 1.0000 |
| 9:131127717:TAG:T | donor_gain | 1.0000 |
| 9:131127717:TAGG:T | donor_loss | 1.0000 |
| 9:131127718:AG:A | donor_gain | 1.0000 |
| 9:131127718:AGGT:A | donor_loss | 1.0000 |
| 9:131127719:GG:G | donor_gain | 1.0000 |
| 9:131127719:GGT:G | donor_loss | 1.0000 |
| 9:131127720:G:GG | donor_gain | 1.0000 |
| 9:131128329:T:G | acceptor_gain | 1.0000 |
| 9:131128330:A:AG | acceptor_gain | 1.0000 |
| 9:131128330:AGTT:A | acceptor_gain | 1.0000 |
AlphaMissense
13393 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:131130771:T:A | W200R | 1.000 |
| 9:131130771:T:C | W200R | 1.000 |
| 9:131133120:T:A | W248R | 1.000 |
| 9:131133120:T:C | W248R | 1.000 |
| 9:131129354:T:A | W157R | 0.999 |
| 9:131129354:T:C | W157R | 0.999 |
| 9:131130774:A:C | S201R | 0.999 |
| 9:131130776:C:A | S201R | 0.999 |
| 9:131130776:C:G | S201R | 0.999 |
| 9:131130793:T:C | L207P | 0.999 |
| 9:131150626:T:C | F713S | 0.999 |
| 9:131159441:T:C | L832P | 0.999 |
| 9:131128391:A:C | S101R | 0.998 |
| 9:131128393:C:A | S101R | 0.998 |
| 9:131128393:C:G | S101R | 0.998 |
| 9:131129415:T:C | L177P | 0.998 |
| 9:131130773:G:C | W200C | 0.998 |
| 9:131130773:G:T | W200C | 0.998 |
| 9:131130786:A:G | K205E | 0.998 |
| 9:131133122:G:C | W248C | 0.998 |
| 9:131133122:G:T | W248C | 0.998 |
| 9:131139287:T:A | W338R | 0.998 |
| 9:131139287:T:C | W338R | 0.998 |
| 9:131139296:T:A | W341R | 0.998 |
| 9:131139296:T:C | W341R | 0.998 |
| 9:131139308:G:C | D345H | 0.998 |
| 9:131139318:G:C | R348P | 0.998 |
| 9:131139321:C:A | A349D | 0.998 |
| 9:131140582:T:C | L389P | 0.998 |
| 9:131159396:T:C | L817P | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000016750 (9:131149335 A>G), RS1000043717 (9:131167150 C>T), RS1000080294 (9:131149601 C>T), RS1000097042 (9:131234589 T>A), RS1000117692 (9:131152613 G>T), RS1000135291 (9:131192082 A>G), RS1000139212 (9:131147335 C>T), RS1000168620 (9:131147689 A>G), RS1000227375 (9:131231353 G>A), RS1000234885 (9:131143000 T>C), RS1000237409 (9:131184929 T>G), RS1000268667 (9:131198179 C>T), RS1000289686 (9:131185276 C>A), RS1000333457 (9:131202471 T>C), RS1000340312 (9:131205212 C>A)
Disease associations
OMIM: gene MIM:114350 | disease phenotypes: MIM:618426, MIM:601626
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| encephalopathy, acute, infection-induced, susceptibility to, 9 | Strong | Autosomal recessive |
Mondo (3): encephalopathy, acute, infection-induced, susceptibility to, 9 (MONDO:0032742), acute myeloid leukemia (MONDO:0018874), acute lymphoblastic leukemia (MONDO:0004967)
Orphanet (2): Acute myeloid leukemia (Orphanet:519), Acute lymphoblastic leukemia (Orphanet:513)
HPO phenotypes
39 total (30 of 39 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000252 | Microcephaly |
| HP:0000961 | Cyanosis |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001272 | Cerebellar atrophy |
| HP:0001276 | Hypertonia |
| HP:0001290 | Generalized hypotonia |
| HP:0001336 | Myoclonus |
| HP:0001347 | Hyperreflexia |
| HP:0001442 | Typified by somatic mosaicism |
| HP:0001508 | Failure to thrive |
| HP:0001522 | Death in infancy |
| HP:0002013 | Vomiting |
| HP:0002020 | Gastroesophageal reflux |
| HP:0002033 | Poor suck |
| HP:0002059 | Cerebral atrophy |
| HP:0002069 | Bilateral tonic-clonic seizure |
| HP:0002098 | Respiratory distress |
| HP:0002104 | Apnea |
| HP:0002283 | Global brain atrophy |
| HP:0002376 | Developmental regression |
| HP:0002643 | Neonatal respiratory distress |
| HP:0002783 | Recurrent lower respiratory tract infections |
| HP:0002900 | Hypokalemia |
| HP:0002902 | Hyponatremia |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST008174_4 | Aspartate aminotransferase levels | 5.000000e-06 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004736 | aspartate aminotransferase measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D015470 | Leukemia, Myeloid, Acute | C04.557.337.539.275; C15.378.508.539.275 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
44 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Benzo(a)pyrene | affects methylation | 2 |
| Nickel | increases expression | 2 |
| Cadmium Chloride | decreases expression, increases abundance | 2 |
| FR900359 | affects phosphorylation | 1 |
| TAK-243 | decreases sumoylation | 1 |
| dicrotophos | increases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases expression, increases abundance | 1 |
| pirinixic acid | affects binding, increases activity, increases expression | 1 |
| bisphenol A | decreases expression | 1 |
| deoxynivalenol | increases expression | 1 |
| coumarin | increases phosphorylation | 1 |
| methacrylaldehyde | increases expression, increases abundance, affects cotreatment | 1 |
| 2,3,5-(triglutathion-S-yl)hydroquinone | decreases ADP-ribosylation | 1 |
| nutlin 3 | affects cotreatment, increases secretion | 1 |
| gardiquimod | decreases expression, decreases reaction | 1 |
| NSC 689534 | affects binding, decreases expression | 1 |
| Lycopene | decreases expression | 1 |
| Acetaminophen | increases expression | 1 |
| Acrolein | affects cotreatment, increases expression, increases abundance | 1 |
| Air Pollutants | increases abundance, increases expression, affects cotreatment | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Caffeine | affects phosphorylation | 1 |
| Cannabidiol | affects cotreatment, increases expression | 1 |
| Carbamazepine | affects expression | 1 |
| Copper | decreases expression, affects binding | 1 |
| Cuprizone | affects cotreatment, increases expression | 1 |
| Dactinomycin | affects cotreatment, increases secretion | 1 |
| Doxorubicin | decreases expression | 1 |
| Enzyme Inhibitors | decreases activity, increases O-linked glycosylation | 1 |
Cellosaurus cell lines
8 cell lines: 8 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_1081 | BE-13 | Cancer cell line | Female |
| CVCL_1380 | Loucy | Cancer cell line | Female |
| CVCL_1805 | ALL-SIL | Cancer cell line | Male |
| CVCL_1833 | MEGAL | Cancer cell line | Female |
| CVCL_1913 | Peer | Cancer cell line | Female |
| CVCL_2041 | FKH-1 | Cancer cell line | Male |
| CVCL_2771 | TALL-104 | Cancer cell line | Male |
| CVCL_E8UC | ICLU-T | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00199147 | PHASE4 | UNKNOWN | Efficacy of G-CSF-Priming in Elderly AML Patients |
| NCT00304447 | PHASE4 | COMPLETED | Study Evaluating the Effect of Corticosteroids on Mylotarg® Infusion-Related Adverse Events in Patients With Leukemia |
| NCT00464217 | PHASE4 | COMPLETED | Treatment of the Acute Myeloblastic Leukaemia in Patients Over 65 Years |
| NCT00487448 | PHASE4 | COMPLETED | SMD_FLAG-IDA_98: FLAG-IDA in Induction Treatment of High Risk Myelodysplastic Syndromes or Secondary Acute Myeloblastic Leukemia |
| NCT00488709 | PHASE4 | COMPLETED | Fludarabine, Cytarabine, Topotecan in Treating Patients With Relapsed or Refractory Acute Myeloid Leukemia |
| NCT00686543 | PHASE4 | COMPLETED | Oral Posaconazole in High Risk Patients With Gastrointestinal Dysfunction (Study P05115) |
| NCT01041040 | PHASE4 | COMPLETED | LAM07: Study to Analyze the Efficacy of a Risk Adapted Treatment Strategy, Including Gemtuzumab Ozogamicin (GO) During Consolidation, for Patients With Acute Myeloid Leukemia (AML) |
| NCT01198054 | PHASE4 | TERMINATED | LENA-LMA-5:Lenalidomide in Acute Myeloid Leukemia (AML) |
| NCT01200355 | PHASE4 | COMPLETED | Posaconazole Versus Micafungin for Prophylaxis Against Invasive Fungal Infections During Neutropenia in Patients Undergoing Chemotherapy for Acute Myelogenous Leukemia, Acute Lymphocytic Leukemia or Myelodysplastic Syndrome |
| NCT01347996 | PHASE4 | COMPLETED | Maintenance Therapy With Ceplene® (Histamine) and IL-2 on Immune Response and MRD in Acute Myeloid Leukemia |
| NCT01587430 | PHASE4 | UNKNOWN | 3 Anthracyclines, 2 Types of Consolidation With Different ARA-C Doses and Maintenance in Adult Acute Myeloid Leukemia |
| NCT01819792 | PHASE4 | COMPLETED | Respiratory Viral Infections During Acute Myeloid Leukemia (AML)Chemotherapy Related Aplasia |
| NCT02024308 | PHASE4 | UNKNOWN | AML1-ETO Acute Myeloid Leukemia With Fludarabine and Cytarabine Chemotherapy |
| NCT02027064 | PHASE4 | UNKNOWN | Interferon for the Intervention of Molecular Relapse in t (8; 21) AML After Allo-HSCT |
| NCT02277847 | PHASE4 | UNKNOWN | Idarubicin at Different Dosages as Induction Therapy for Newly Diagnosed Acute Myeloid Leukaemia |
| NCT02386800 | PHASE4 | ACTIVE_NOT_RECRUITING | CINC424A2X01B Rollover Protocol |
| NCT02926586 | PHASE4 | COMPLETED | Fludarabine and Cytarabine Versus High-dose Cytarabine for CBF-AML |
| NCT02933333 | PHASE4 | UNKNOWN | G-CSF Alone or Combination With GM-CSF on Prevention and Treatment of Infection in Children With Malignant Tumor |
| NCT03026842 | PHASE4 | UNKNOWN | Decitabine Versus Conventional Chemotherapy for Maintenance Therapy of Acute Myeloid Leukemia With t(8;21) |
| NCT03150134 | PHASE4 | UNKNOWN | Early Tapering of Immunosuppressive Agents to Immunomodulation to Improve Survival of AML Patients |
| NCT05144243 | PHASE4 | ACTIVE_NOT_RECRUITING | Study to Assess Adverse Events and Change in Disease State of Oral Venetoclax in Combination With Subcutaneous (SC) Azacitidine in Newly Diagnosed Adult Participants With Acute Myeloid Leukemia (AML) Who Are Ineligible for Intensive Chemotherapy in China |
| NCT06370000 | PHASE4 | RECRUITING | Oral Azacitidine in Transplant-Eligible Patients With Acute Myeloid Leukemia (AML) Suffering From Health-Inequality |
| NCT06571825 | PHASE4 | RECRUITING | RIC Allo-HSCT vs. Venetoclax-Based Consolidation in Elderly AML Patients After First CR |
| NCT07016165 | PHASE4 | RECRUITING | Ciprofloxacin vs Ceftazidime for Empirical Treatment of High-Risk Neutropenic Fever in Children With Hematologic Malignancies |
| NCT07044687 | PHASE4 | RECRUITING | Study to Assess Adverse Events and Change in Disease Activity of Oral Venetoclax in Combination With Subcutaneous (SC) or Intravenous (IV) Azacitidine in Newly Diagnosed Adult Participants With Acute Myeloid Leukemia (AML) Who Are Ineligible for Standard Induction Therapy in India |
| NCT07486713 | PHASE4 | RECRUITING | Olutasidenib DDI Study in Patients With IDH1 Mutation Positive Malignancies |
| NCT07561892 | PHASE4 | RECRUITING | Study of the Effectiveness and Safety of Daunorubicin /Idarubicin ± Silibinin in Treating Newly Diagnosed AML (Non-M3). |
| NCT00000589 | PHASE3 | COMPLETED | Trial to Reduce Alloimmunization to Platelets (TRAP) |
| NCT00044486 | PHASE3 | COMPLETED | Prophylaxis Trial of Posaconazole Versus Standard Azole Therapy for Neutropenic Patients (Study P01899) |
| NCT00093990 | PHASE3 | COMPLETED | Tipifarnib Versus Best Supportive Care in the Treatment of Newly Diagnosed Acute Myeloid Leukemia (AML) |
| NCT00125606 | PHASE3 | TERMINATED | Phase 3 Trial for AML Patients in CR2 Comparing 8Gy TBI /Fludarabine to Conditioning With TBI 12Gy/Cyclophosphamide |
| NCT00136084 | PHASE3 | COMPLETED | Treatment of Patients With Newly Diagnosed Acute Myeloid Leukemia or Myelodysplasia |
| NCT00146120 | PHASE3 | COMPLETED | Risk-Adapted Therapy of Acute Myeloid Leukemia of Adults (18-60 Years) According to the Cytogenetic Result |
| NCT00150878 | PHASE3 | TERMINATED | Standard vs. Reduced-Intensity Conditioning in Patients With Acute Myeloid Leukemia in First Remission |
| NCT00151255 | PHASE3 | COMPLETED | All-Trans Retinoic Acid in Combination With Standard Induction and Consolidation Therapy in Older Patients With Newly Diagnosed Acute Myeloid Leukemia |
| NCT00152139 | PHASE3 | COMPLETED | Stem Cell Transplantation for Patients With Hematologic Malignancies |
| NCT00152594 | PHASE3 | TERMINATED | Voriconazole or Placebo in the Prophylaxis of Lung Infiltrates in Patients Undergoing Induction Chemotherapy for Acute Myelogenous Leukemia |
| NCT00186966 | PHASE3 | COMPLETED | Treatment of Children and Adolescents With Refractory or Relapsed Acute Myeloid Leukemia |
| NCT00226512 | PHASE3 | WITHDRAWN | To Determine the Role of Adding Campath-1H or ATG Given In-vivo in Addition to Fludarabine and Low Dose Busulfex on Outcome in Patients Treated With Reduced Intensity Conditioning |
| NCT00260832 | PHASE3 | COMPLETED | Trial of Decitabine in Patients With Acute Myeloid Leukemia |
Related Atlas pages
- Associated diseases: encephalopathy, acute, infection-induced, susceptibility to, 9
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute lymphoblastic leukemia, acute myeloid leukemia, encephalopathy, acute, infection-induced, susceptibility to, 9