NUP93-DT

Summary

NUP93-DT (NUP93 divergent transcript, HGNC:55370) is a long non-coding RNA gene on chromosome 16q13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55370
Approved symbol	NUP93-DT
Name	NUP93 divergent transcript
Location	16q13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261302
Ensembl biotype	lncRNA
Entrez	105371286
RNAcentral	URS00026A2572 — lncRNA, 1550 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000561663, ENST00000564560, ENST00000668197, ENST00000702369, ENST00000761329, ENST00000761330, ENST00000761331

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561663 — 3 exons

Exon	Start	End
ENSE00002591583	56708450	56709245
ENSE00002628607	56709914	56709994
ENSE00004115461	56729506	56730011

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 92.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2592 / max 28.7072, expressed in 124 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
157497	0.2592	124

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.42	gold quality
testis	UBERON:0000473	63.86	gold quality
left testis	UBERON:0004533	63.81	gold quality
right testis	UBERON:0004534	62.57	gold quality
cortical plate	UBERON:0005343	61.56	gold quality
ganglionic eminence	UBERON:0004023	61.38	gold quality
ventricular zone	UBERON:0003053	59.81	gold quality
nucleus accumbens	UBERON:0001882	56.69	gold quality
skeletal muscle tissue	UBERON:0001134	56.14	gold quality
thyroid gland	UBERON:0002046	56.05	gold quality
right lobe of thyroid gland	UBERON:0001119	55.91	gold quality
prefrontal cortex	UBERON:0000451	55.88	gold quality
left lobe of thyroid gland	UBERON:0001120	55.74	gold quality
tonsil	UBERON:0002372	55.36	gold quality
lymph node	UBERON:0000029	55.16	gold quality
primary visual cortex	UBERON:0002436	54.81	gold quality
muscle tissue	UBERON:0002385	54.62	gold quality
adenohypophysis	UBERON:0002196	53.95	gold quality
myometrium	UBERON:0001296	53.73	gold quality
superior frontal gyrus	UBERON:0002661	53.62	gold quality
left ovary	UBERON:0002119	53.34	gold quality
ovary	UBERON:0000992	53.33	gold quality
skin of leg	UBERON:0001511	53.31	gold quality
vermiform appendix	UBERON:0001154	53.00	gold quality
frontal cortex	UBERON:0001870	52.99	gold quality
islet of Langerhans	UBERON:0000006	52.92	gold quality
caudate nucleus	UBERON:0001873	52.87	gold quality
pituitary gland	UBERON:0000007	52.81	gold quality
blood	UBERON:0000178	52.78	gold quality
putamen	UBERON:0001874	52.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.