OBSCN
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Also known as KIAA1556UNC89KIAA1639ARHGEF30
Summary
OBSCN (obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF, HGNC:15719) is a protein-coding gene on chromosome 1q42.13, encoding Obscurin (Q5VST9). Structural component of striated muscles which plays a role in myofibrillogenesis.
The obscurin gene spans more than 150 kb, contains over 80 exons and encodes a protein of approximately 720 kDa. The encoded protein contains 68 Ig domains, 2 fibronectin domains, 1 calcium/calmodulin-binding domain, 1 RhoGEF domain with an associated PH domain, and 2 serine-threonine kinase domains. This protein belongs to the family of giant sacromeric signaling proteins that includes titin and nebulin, and may have a role in the organization of myofibrils during assembly and may mediate interactions between the sarcoplasmic reticulum and myofibrils. Alternatively spliced transcript variants encoding different isoforms have been identified.
Source: NCBI Gene 84033 — RefSeq curated summary.
At a glance
- Gene–disease (curated): rhabdomyolysis, susceptibility to, 1 (Strong, GenCC) — +3 more curated relationships
- GWAS associations: 6
- Clinical variants (ClinVar): 5,888 total — 32 pathogenic, 24 likely-pathogenic
- Phenotypes (HPO): 44
- MANE Select transcript:
NM_001386125
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15719 |
| Approved symbol | OBSCN |
| Name | obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF |
| Location | 1q42.13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | KIAA1556, UNC89, KIAA1639, ARHGEF30 |
| Ensembl gene | ENSG00000154358 |
| Ensembl biotype | protein_coding |
| OMIM | 608616 |
| Entrez | 84033 |
Gene structure
Transcript identifiers
Ensembl transcripts: 28 — 12 protein_coding, 7 retained_intron, 6 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined, 1 non_stop_decay
ENST00000284548, ENST00000366704, ENST00000366706, ENST00000422127, ENST00000474237, ENST00000483539, ENST00000493977, ENST00000494839, ENST00000570156, ENST00000602685, ENST00000602832, ENST00000636476, ENST00000659732, ENST00000660585, ENST00000660606, ENST00000660857, ENST00000662438, ENST00000663720, ENST00000664353, ENST00000664561, ENST00000664862, ENST00000664957, ENST00000665495, ENST00000668066, ENST00000668629, ENST00000668943, ENST00000669688, ENST00000680850
RefSeq mRNA: 4 — MANE Select: NM_001386125
NM_001098623, NM_001271223, NM_001386125, NM_052843
CCDS: CCDS1570, CCDS58065, CCDS59204, CCDS91171
Canonical transcript exons
ENST00000680850 — 116 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000850950 | 228374314 | 228374424 |
| ENSE00000850953 | 228376008 | 228376178 |
| ENSE00001015446 | 228351321 | 228351450 |
| ENSE00001069795 | 228334815 | 228334913 |
| ENSE00001069797 | 228315847 | 228316119 |
| ENSE00001069798 | 228333583 | 228333780 |
| ENSE00001069800 | 228338853 | 228339026 |
| ENSE00001069801 | 228340506 | 228340622 |
| ENSE00001069805 | 228337944 | 228338144 |
| ENSE00001069807 | 228306372 | 228306638 |
| ENSE00001069808 | 228338290 | 228338372 |
| ENSE00001069809 | 228323328 | 228323606 |
| ENSE00001069810 | 228309099 | 228309295 |
| ENSE00001069811 | 228336200 | 228336270 |
| ENSE00001069814 | 228335080 | 228335298 |
| ENSE00001069816 | 228334512 | 228334544 |
| ENSE00001069820 | 228340724 | 228340888 |
| ENSE00001069822 | 228307259 | 228307531 |
| ENSE00001069823 | 228317892 | 228318173 |
| ENSE00001069827 | 228306901 | 228307167 |
| ENSE00001069829 | 228339945 | 228340101 |
| ENSE00001069830 | 228332860 | 228332938 |
| ENSE00001069834 | 228309484 | 228309559 |
| ENSE00001069838 | 228350841 | 228350943 |
| ENSE00001069840 | 228342119 | 228342232 |
| ENSE00001069842 | 228341095 | 228341253 |
| ENSE00001069843 | 228333199 | 228333323 |
| ENSE00001069846 | 228341437 | 228341614 |
| ENSE00001069848 | 228335791 | 228335851 |
| ENSE00001069850 | 228317464 | 228317751 |
| ENSE00001069853 | 228337004 | 228337126 |
| ENSE00001069854 | 228318884 | 228319254 |
| ENSE00001069855 | 228308111 | 228308383 |
| ENSE00001069867 | 228321344 | 228322214 |
| ENSE00001069870 | 228316709 | 228316984 |
| ENSE00001069874 | 228337244 | 228337383 |
| ENSE00001228273 | 228378271 | 228378420 |
| ENSE00001228279 | 228377931 | 228378006 |
| ENSE00001228287 | 228377489 | 228377712 |
| ENSE00001228294 | 228377052 | 228377291 |
| ENSE00001228302 | 228376793 | 228376874 |
| ENSE00001228313 | 228375702 | 228375824 |
| ENSE00001228318 | 228374585 | 228374752 |
| ENSE00001228326 | 228373932 | 228374012 |
| ENSE00001228331 | 228371023 | 228373081 |
| ENSE00001228335 | 228370679 | 228370756 |
| ENSE00001228344 | 228370193 | 228370238 |
| ENSE00001228349 | 228369942 | 228370094 |
| ENSE00001273743 | 228352951 | 228353062 |
| ENSE00001273763 | 228349890 | 228350057 |
| ENSE00001442356 | 228368722 | 228368894 |
| ENSE00001442357 | 228368339 | 228368416 |
| ENSE00001442358 | 228367886 | 228367946 |
| ENSE00001442359 | 228366975 | 228367175 |
| ENSE00001442360 | 228366808 | 228366889 |
| ENSE00001442361 | 228366400 | 228366568 |
| ENSE00001442362 | 228366074 | 228366186 |
| ENSE00001442363 | 228365436 | 228365560 |
| ENSE00001442364 | 228364981 | 228365077 |
| ENSE00001442365 | 228362576 | 228362755 |
| ENSE00001545513 | 228271925 | 228272221 |
| ENSE00001545515 | 228369136 | 228369162 |
| ENSE00001944542 | 228277505 | 228277666 |
| ENSE00002336828 | 228286078 | 228286350 |
| ENSE00002338706 | 228298454 | 228298717 |
| ENSE00002339635 | 228291898 | 228292161 |
| ENSE00002351853 | 228304303 | 228304566 |
| ENSE00002353923 | 228283503 | 228283769 |
| ENSE00002356246 | 228294780 | 228295043 |
| ENSE00002358105 | 228259501 | 228259776 |
| ENSE00002358473 | 228287694 | 228287960 |
| ENSE00002379086 | 228288625 | 228288888 |
| ENSE00002389223 | 228273272 | 228273547 |
| ENSE00002394436 | 228292523 | 228292786 |
| ENSE00002398935 | 228293353 | 228293616 |
| ENSE00002423642 | 228286773 | 228287039 |
| ENSE00002424455 | 228288061 | 228288324 |
| ENSE00002424782 | 228294152 | 228294415 |
| ENSE00002604035 | 228305123 | 228305386 |
| ENSE00003380583 | 228219324 | 228219599 |
| ENSE00003467421 | 228280530 | 228280796 |
| ENSE00003488373 | 228217013 | 228217288 |
| ENSE00003489711 | 228303675 | 228303938 |
| ENSE00003506651 | 228299259 | 228299522 |
| ENSE00003517942 | 228281933 | 228282205 |
| ENSE00003574290 | 228299882 | 228300145 |
| ENSE00003628894 | 228216421 | 228216702 |
| ENSE00003712062 | 228275760 | 228276026 |
| ENSE00003712443 | 228274178 | 228274444 |
| ENSE00003714432 | 228283018 | 228283284 |
| ENSE00003714549 | 228264116 | 228264391 |
| ENSE00003716664 | 228279821 | 228280087 |
| ENSE00003719622 | 228268530 | 228268805 |
| ENSE00003720099 | 228246528 | 228246803 |
| ENSE00003721152 | 228280179 | 228280445 |
| ENSE00003721318 | 228276930 | 228277042 |
| ENSE00003722775 | 228277754 | 228277858 |
| ENSE00003723641 | 228256651 | 228256926 |
| ENSE00003724058 | 228278689 | 228278955 |
| ENSE00003729467 | 228213441 | 228213710 |
| ENSE00003731094 | 228277160 | 228277313 |
| ENSE00003732646 | 228215563 | 228215829 |
| ENSE00003734484 | 228224459 | 228224734 |
| ENSE00003734900 | 228243183 | 228243458 |
| ENSE00003735010 | 228214790 | 228215098 |
| ENSE00003735847 | 228249965 | 228250240 |
| ENSE00003739525 | 228279175 | 228279444 |
| ENSE00003744962 | 228245413 | 228245688 |
| ENSE00003748332 | 228211766 | 228212771 |
| ENSE00003751405 | 228276450 | 228276716 |
| ENSE00003751498 | 228214174 | 228214434 |
| ENSE00003752546 | 228274572 | 228274841 |
| ENSE00003753817 | 228244296 | 228244571 |
| ENSE00003754850 | 228273770 | 228274048 |
| ENSE00003881780 | 228378618 | 228378876 |
| ENSE00003905141 | 228208044 | 228208185 |
Expression profiles
Bgee: expression breadth ubiquitous, 197 present calls, max score 99.48.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 13.6097 / max 673.3453, expressed in 1324 samples.
FANTOM5 promoters (7 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 8938 | 10.2661 | 1304 |
| 8935 | 2.6622 | 84 |
| 8936 | 0.2482 | 32 |
| 8937 | 0.2183 | 79 |
| 8947 | 0.1236 | 58 |
| 8946 | 0.0761 | 34 |
| 201983 | 0.0152 | 11 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| hindlimb stylopod muscle | UBERON:0004252 | 99.48 | gold quality |
| apex of heart | UBERON:0002098 | 99.43 | gold quality |
| gastrocnemius | UBERON:0001388 | 98.92 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.07 | gold quality |
| right atrium auricular region | UBERON:0006631 | 97.72 | gold quality |
| muscle of leg | UBERON:0001383 | 97.68 | gold quality |
| heart left ventricle | UBERON:0002084 | 97.11 | gold quality |
| cardiac ventricle | UBERON:0002082 | 96.96 | gold quality |
| body of tongue | UBERON:0011876 | 95.94 | gold quality |
| biceps brachii | UBERON:0001507 | 95.72 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 95.38 | gold quality |
| cardiac atrium | UBERON:0002081 | 94.86 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 94.22 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 93.41 | gold quality |
| heart | UBERON:0000948 | 93.38 | gold quality |
| cerebellar cortex | UBERON:0002129 | 93.13 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 92.41 | gold quality |
| muscle organ | UBERON:0001630 | 92.38 | gold quality |
| sural nerve | UBERON:0015488 | 91.60 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 91.55 | gold quality |
| right uterine tube | UBERON:0001302 | 91.13 | gold quality |
| heart right ventricle | UBERON:0002080 | 90.86 | gold quality |
| adenohypophysis | UBERON:0002196 | 90.46 | gold quality |
| left lobe of thyroid gland | UBERON:0001120 | 90.16 | gold quality |
| caudate nucleus | UBERON:0001873 | 90.07 | gold quality |
| right lobe of thyroid gland | UBERON:0001119 | 90.06 | gold quality |
| putamen | UBERON:0001874 | 90.02 | gold quality |
| cerebellum | UBERON:0002037 | 89.78 | gold quality |
| pituitary gland | UBERON:0000007 | 89.64 | gold quality |
| nucleus accumbens | UBERON:0001882 | 89.53 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 8.17 |
| E-MTAB-11268 | no | 1960.49 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
14 targeting OBSCN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4728-5P | 99.85 | 69.39 | 4718 |
| HSA-MIR-6785-5P | 99.82 | 68.68 | 4428 |
| HSA-MIR-149-3P | 99.72 | 68.22 | 3963 |
| HSA-MIR-6883-5P | 99.69 | 68.05 | 3785 |
| HSA-MIR-10394-5P | 99.65 | 66.83 | 1852 |
| HSA-MIR-1205 | 99.65 | 66.76 | 1826 |
| HSA-MIR-3158-5P | 99.65 | 67.51 | 1763 |
| HSA-MIR-7160-5P | 99.11 | 67.17 | 2207 |
| HSA-MIR-1294 | 98.91 | 69.26 | 1030 |
| HSA-MIR-9986 | 98.91 | 69.28 | 1024 |
| HSA-MIR-3922-5P | 98.77 | 66.53 | 1059 |
| HSA-MIR-4704-3P | 98.28 | 69.33 | 1300 |
| HSA-MIR-4690-3P | 97.02 | 64.72 | 981 |
| HSA-MIR-4264 | 96.35 | 64.76 | 1480 |
Literature-anchored findings (GeneRIF, showing 28)
- Results suggest that obscurin binds small ankyrin 1, and document a specific and direct interaction between proteins of the sarcomere and the sarcoplasmic reticulum. (PMID:12631729)
- The complete gene giant muscle protein obscurin was analysed. The fusion of the conventional obscurin A, containing only the GEF domain, and obscurin B, fusing into the 3’ kinase exons, was experimentally confirmed and analysed. (PMID:16625316)
- OBSCN and C9orf65 comprise a highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas. (PMID:17360660)
- Studies suggest that the obscurin abnormality may be involved in the pathogenesis of hypertrophic cardiomyopathy. (PMID:17716621)
- Structural and mutational studies of the binding region on small Ank1 for obscurin suggest that it consists of two ankyrin repeats with very similar structures. (PMID:17720975)
- Obscurin was never lacking in myofibrillar alterations, but was either preserved at the M-band level or diffusely spread over the sarcomeres. (PMID:18350308)
- These findings reveal a novel signaling pathway in human skeletal muscle that involves obscurin and the Rho GTPase TC10 and implicate this pathway in new sarcomere formation. (PMID:19258391)
- Results describe the molecular basis for the head-to-tail interaction of the carboxyl terminus of titin and the amino-terminus of obscurin-like-1 by X-ray crystallography. (PMID:20489725)
- OBSCN polymorphisms, in particular, highly conserved nonsynonymous Leu2116Phe variant, might contribute to aspirin hypersensitivity in asthmatics (PMID:22251166)
- Nontumorigenic MCF10A breast epithelial cells stably transduced with shRNAs targeting giant obscurins exhibited increased viability ( approximately 30%) and reduced apoptosis ( approximately 20%) following exposure to the DNA-damaging agent etoposide. (PMID:22441987)
- Obscurin and KCTD6 regulate cullin-dependent small ankyrin-1 (sAnk1.5) protein turnover (PMID:22573887)
- Loss of the obscurin-RhoGEF downregulates RhoA signaling and increases microtentacle formation and attachment of breast epithelial cells. (PMID:25261370)
- Findings indicate that loss of giant obscurins from breast epithelium results in disruption of the cell-cell contacts and acquisition of a mesenchymal phenotype that leads to enhanced tumorigenesis, migration and invasiveness in vitro and in vivo. (PMID:25381817)
- this study presents here the X-ray structure of the human titin:obscurin M10:O1 complex extending our previous work on the M10:OL1 interaction. (PMID:25490259)
- Gene-based association analyses shows nominal significant association with multifocal fibromuscular dysplasia for obscurin. (PMID:26147384)
- OBSCN mutations may result in the development of a familial dilated cardiomyopathy (DCM) phenotype via haploinsufficiency. These mutations should be considered as a significant causal factor of DCM, alone or in concert with other mutations. (PMID:26406308)
- demonstrate that loss of giant obscurins from breast epithelial cells is associated with significantly increased phosphorylation and subsequent activation of the PI3K signaling cascade (PMID:27323778)
- association of frameshift and splicing variants, all clustering to the C terminus of the same isoform group, with occurrence of rare left ventricular noncompaction phenotype (PMID:27855815)
- Crystal structure of the obscurin(-like-1):myomesin complex reveals a trans-complementation mechanism whereby an incomplete immunoglobulin-like domain assimilates an isoform-specific myomesin interdomain sequence. (PMID:27989621)
- suggest that the combination of the OBSCN p.Arg4444Trp variant and of the FLNC c.5161delG mutation, can cooperatively affect myofibril stability and increase the penetrance of muscular dystrophy in the French family (PMID:29073160)
- This study finds in all cases tested that tandem obscurin Ig domains interact at the poles of each domain and tend to stay relatively extended in solution. NMR, SAXS, and MD simulations reveal that while tandem domains are elongated, they also bend and flex significantly. (PMID:30666746)
- Intracellular calcium current disorder and disease phenotype in OBSCN mutant iPSC-based cardiomyocytes in arrhythmogenic right ventricular cardiomyopathy. (PMID:33042279)
- When is an obscurin variant pathogenic? The impact of Arg4344Gln and Arg4444Trp variants on protein-protein interactions and protein stability. (PMID:33438037)
- Truncating Variants in OBSCN Gene Associated With Disease-Onset and Outcomes of Hypertrophic Cardiomyopathy. (PMID:34601892)
- Giant obscurin regulates migration and metastasis via RhoA-dependent cytoskeletal remodeling in pancreatic cancer. (PMID:34826548)
- Bi-allelic loss-of-function OBSCN variants predispose individuals to severe recurrent rhabdomyolysis. (PMID:34957489)
- Essential role of obscurin kinase-1 in cardiomyocyte coupling via N-cadherin phosphorylation. (PMID:38127465)
- Novel OBSCN variants associated with a risk to exercise-intolerance and rhabdomyolysis. (PMID:38159459)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | obscnb | ENSDARG00000022101 |
| mus_musculus | Obscn | ENSMUSG00000061462 |
| rattus_norvegicus | Obscn | ENSRNOG00000058068 |
| drosophila_melanogaster | bt | FBGN0005666 |
| caenorhabditis_elegans | WBGENE00001000 | |
| caenorhabditis_elegans | WBGENE00006759 |
Paralogs (9): SPEG (ENSG00000072195), MYOT (ENSG00000120729), PALLD (ENSG00000129116), ALPK3 (ENSG00000136383), MYPN (ENSG00000138347), HMCN1 (ENSG00000143341), IGFN1 (ENSG00000163395), CCDC141 (ENSG00000163492), SPEGNB (ENSG00000286095)
Protein
Protein identifiers
Obscurin — Q5VST9 (reviewed: Q5VST9)
Alternative names: Obscurin-RhoGEF, Obscurin-myosin light chain kinase
All UniProt accessions (15): Q5VST9, A0A0A0MRI8, A0A590UJ10, A0A590UJ33, A0A590UJ65, A0A590UJD0, A0A590UJD5, A0A590UJH9, A0A590UJJ2, A0A590UJV7, A0A590UK18, A0A590UKA5, A6NGQ3, H3BPW6, H3BQA7
UniProt curated annotations — full annotation on UniProt →
Function. Structural component of striated muscles which plays a role in myofibrillogenesis. Probably involved in the assembly of myosin into sarcomeric A bands in striated muscle. Has serine/threonine protein kinase activity and phosphorylates N-cadherin CDH2 and sodium/potassium-transporting ATPase subunit ATP1B1. Binds (via the PH domain) strongly to phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4)P2) and phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2), and to a lesser extent to phosphatidylinositol 3-phosphate (PtdIns(3)P), phosphatidylinositol 4-phosphate (PtdIns(4)P), phosphatidylinositol 5-phosphate (PtdIns(5)P) and phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3).
Subunit / interactions. Interacts (via protein kinase domain 2) with CDH2 and (via protein kinase domain 1) with ATP1B1. Isoform 3 interacts with TTN/titin and calmodulin. Isoform 3 interacts with ANK1 isoform Mu17/ank1.5.
Subcellular location. Cytoplasm. Myofibril. Sarcomere. M line. Z line Cytoplasm. Z line. Cell membrane. Sarcolemma. Nucleus.
Post-translational modifications. Autophosphorylated by protein kinase domains 1 and 2.
Disease relevance. Rhabdomyolysis 1 (RHABDO1) [MIM:620235] An autosomal recessive disorder characterized by severe and recurrent rhabdomyolysis, usually with onset in the teenage years. Some of the episodes may be triggered by exercise or heat; others occur spontaneously. Rhabdomyolysis is the rapid breakdown of damaged or injured skeletal myofibres and may require intensive care management. Muscle breakdown results in release of myofibrillar content into the extracellular space and circulation, resulting in hyperCKemia (hyperCK) and myoglobinuria. RHABDO1 patients may have a history of myalgia and muscle cramps that precede the initial rhabdomyolysis episodes. Disease susceptibility is associated with variants affecting the gene represented in this entry. A chromosomal aberration involving OBSCN has been found in Wilms tumor. Translocation t(1;7)(q42;p15) with PTHB1.
Miscellaneous. Lacks the kinase domain. Initially described as obscurin.
Similarity. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.
Isoforms (5)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q5VST9-1 | 1, B, obscurin-MLCK giant kinase | yes |
| Q5VST9-2 | 2 | |
| Q5VST9-3 | 3, unc-89-like | |
| Q5VST9-6 | 5 | |
| Q5VST9-7 | 7 |
RefSeq proteins (4): NP_001092093, NP_001258152, NP_001373054, NP_443075 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000048 | IQ_motif_EF-hand-BS | Binding_site |
| IPR000219 | DH_dom | Domain |
| IPR000719 | Prot_kinase_dom | Domain |
| IPR001452 | SH3_domain | Domain |
| IPR001849 | PH_domain | Domain |
| IPR003598 | Ig_sub2 | Domain |
| IPR003599 | Ig_sub | Domain |
| IPR003961 | FN3_dom | Domain |
| IPR007110 | Ig-like_dom | Domain |
| IPR008266 | Tyr_kinase_AS | Active_site |
| IPR008271 | Ser/Thr_kinase_AS | Active_site |
| IPR011009 | Kinase-like_dom_sf | Homologous_superfamily |
| IPR011993 | PH-like_dom_sf | Homologous_superfamily |
| IPR013098 | Ig_I-set | Domain |
| IPR013106 | Ig_V-set | Domain |
| IPR013783 | Ig-like_fold | Homologous_superfamily |
| IPR017441 | Protein_kinase_ATP_BS | Binding_site |
| IPR035526 | Obscurin_SH3 | Domain |
| IPR035899 | DBL_dom_sf | Homologous_superfamily |
| IPR036028 | SH3-like_dom_sf | Homologous_superfamily |
| IPR036116 | FN3_sf | Homologous_superfamily |
| IPR036179 | Ig-like_dom_sf | Homologous_superfamily |
| IPR052385 | Obscurin/Obscurin-like_Reg | Family |
| IPR055251 | SOS1_NGEF_PH | Domain |
Pfam: PF00041, PF00069, PF00612, PF00621, PF07679, PF22697
Catalyzed reactions (Rhea), 2 shown:
- L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+) (RHEA:17989)
- L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+) (RHEA:46608)
UniProt features (453 total): strand 158, domain 65, sequence conflict 60, sequence variant 58, disulfide bond 39, modified residue 14, turn 12, helix 10, splice variant 9, region of interest 9, compositionally biased region 8, binding site 6, mutagenesis site 2, active site 2, chain 1
Structure
Experimental structures (PDB)
25 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 5TZM | X-RAY DIFFRACTION | 1.18 |
| 4C4K | X-RAY DIFFRACTION | 1.95 |
| 2YZ8 | X-RAY DIFFRACTION | 2 |
| 4RSV | X-RAY DIFFRACTION | 2.41 |
| 4UOW | X-RAY DIFFRACTION | 3.3 |
| 1V1C | SOLUTION NMR | |
| 2CR6 | SOLUTION NMR | |
| 2DKU | SOLUTION NMR | |
| 2DM7 | SOLUTION NMR | |
| 2E7B | SOLUTION NMR | |
| 2EDF | SOLUTION NMR | |
| 2EDH | SOLUTION NMR | |
| 2EDL | SOLUTION NMR | |
| 2EDQ | SOLUTION NMR | |
| 2EDR | SOLUTION NMR | |
| 2EDT | SOLUTION NMR | |
| 2EDW | SOLUTION NMR | |
| 2ENY | SOLUTION NMR | |
| 2EO1 | SOLUTION NMR | |
| 2GQH | SOLUTION NMR | |
| 2MWC | SOLUTION NMR | |
| 2N56 | SOLUTION NMR | |
| 6MG9 | SOLUTION NMR | |
| 7R67 | SOLUTION NMR | |
| 7R68 | SOLUTION NMR |
Predicted structure (AlphaFold)
No AlphaFold model available for Q5VST9 — AlphaFold DB does not currently provide models for proteins above ~3000 aa.
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (2): 6587 (proton acceptor); 7791 (proton acceptor)
Ligand- & substrate-binding residues (6): 5975; 5980; 6474–6482; 6497; 7678–7686; 7701
Post-translational modifications (14): 5569, 5571, 5573, 6831, 7244, 395, 2889, 4015, 4750, 4754, 4757, 4788, 4805, 5563
Disulfide bonds (39): 31–82, 259–311, 354–404, 819–870, 912–962, 1004–1054, 1096–1146, 1188–1238, 1280–1330, 1372–1422, 1464–1514, 1556–1606, 1648–1698, 1723–1791, 1830–1880, 2187–2237, 2311–2361, 2490–2540, 2668–2718, 2848–2898 …
Mutagenesis-validated functional residues (2):
| Position | Phenotype |
|---|---|
| 5975 | reduced binding to phosphatidylinositol 4,5-bisphosphate. |
| 5980 | reduced binding to phosphatidylinositol 3,4-bisphosphate. |
Function
Pathways and Gene Ontology
Reactome pathways
4 pathways
| ID | Pathway |
|---|---|
| R-HSA-193648 | NRAGE signals death through JNK |
| R-HSA-416482 | G alpha (12/13) signalling events |
| R-HSA-8980692 | RHOA GTPase cycle |
| R-HSA-9013406 | RHOQ GTPase cycle |
MSigDB gene sets: 226 (showing top):
RNGTGGGC_UNKNOWN, MODULE_255, LFA1_Q6, GOBP_STRIATED_MUSCLE_CELL_DIFFERENTIATION, GOBP_REGULATION_OF_SMALL_GTPASE_MEDIATED_SIGNAL_TRANSDUCTION, MODULE_317, REACTOME_NRAGE_SIGNALS_DEATH_THROUGH_JNK, AP4_Q6, TGACCTY_ERR1_Q2, GOBP_SARCOMERE_ORGANIZATION, CAGCTG_AP4_Q5, GOBP_CELLULAR_COMPONENT_ASSEMBLY_INVOLVED_IN_MORPHOGENESIS, GOBP_MUSCLE_STRUCTURE_DEVELOPMENT, TGIF_01, GOBP_ACTOMYOSIN_STRUCTURE_ORGANIZATION
GO Biological Process (6): protein localization to M-band (GO:0036309), sarcomere organization (GO:0045214), regulation of small GTPase mediated signal transduction (GO:0051056), protein phosphorylation (GO:0006468), cell differentiation (GO:0030154), regulation of intracellular signal transduction (GO:1902531)
GO Molecular Function (22): protein serine/threonine kinase activity (GO:0004674), guanyl-nucleotide exchange factor activity (GO:0005085), calmodulin binding (GO:0005516), ATP binding (GO:0005524), phosphatidylinositol-4,5-bisphosphate binding (GO:0005546), phosphatidylinositol-3,4,5-trisphosphate binding (GO:0005547), structural constituent of muscle (GO:0008307), phosphatidylinositol-5-phosphate binding (GO:0010314), ankyrin binding (GO:0030506), titin binding (GO:0031432), phosphatidylinositol-3-phosphate binding (GO:0032266), phosphatidylinositol-3,4-bisphosphate binding (GO:0043325), metal ion binding (GO:0046872), phosphatidylinositol-4-phosphate binding (GO:0070273), protein serine kinase activity (GO:0106310), nucleotide binding (GO:0000166), protein kinase activity (GO:0004672), protein binding (GO:0005515), lipid binding (GO:0008289), kinase activity (GO:0016301), transferase activity (GO:0016740), phosphatidylinositol bisphosphate binding (GO:1902936)
GO Cellular Component (10): cytosol (GO:0005829), plasma membrane (GO:0005886), nuclear body (GO:0016604), myofibril (GO:0030016), Z disc (GO:0030018), M band (GO:0031430), sarcolemma (GO:0042383), nucleus (GO:0005634), cytoplasm (GO:0005737), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| RHO GTPase cycle | 2 |
| Cell death signalling via NRAGE, NRIF and NADE | 1 |
| GPCR downstream signalling | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| phosphatidylinositol phosphate binding | 5 |
| cellular anatomical structure | 5 |
| anion binding | 3 |
| protein kinase activity | 2 |
| phosphatidylinositol bisphosphate binding | 2 |
| cytoskeletal protein binding | 2 |
| binding | 2 |
| protein localization to organelle | 1 |
| myofibril assembly | 1 |
| actomyosin structure organization | 1 |
| small GTPase-mediated signal transduction | 1 |
| regulation of intracellular signal transduction | 1 |
| phosphorylation | 1 |
| protein modification process | 1 |
| cellular developmental process | 1 |
| regulation of signal transduction | 1 |
| intracellular signal transduction | 1 |
| GTP binding | 1 |
| GDP binding | 1 |
| GTPase regulator activity | 1 |
| protein binding | 1 |
| adenyl ribonucleotide binding | 1 |
| purine ribonucleoside triphosphate binding | 1 |
| structural molecule activity | 1 |
| cation binding | 1 |
| nucleoside phosphate binding | 1 |
| heterocyclic compound binding | 1 |
| kinase activity | 1 |
| phosphotransferase activity, alcohol group as acceptor | 1 |
| catalytic activity, acting on a protein | 1 |
| transferase activity, transferring phosphorus-containing groups | 1 |
| cytoplasm | 1 |
| membrane | 1 |
| cell periphery | 1 |
| nucleoplasm | 1 |
| intracellular membraneless organelle | 1 |
| contractile muscle fiber | 1 |
| I band | 1 |
| A band | 1 |
| plasma membrane | 1 |
Protein interactions and networks
STRING
1914 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| OBSCN | TTN | Q8WZ42 | 987 |
| OBSCN | ANK1 | P16157 | 970 |
| OBSCN | ANK2 | Q01484 | 944 |
| OBSCN | NEB | P20929 | 840 |
| OBSCN | TCAP | O15273 | 821 |
| OBSCN | POU6F2 | P78424 | 772 |
| OBSCN | ANK3 | Q12955 | 747 |
| OBSCN | MUC16 | Q8WXI7 | 735 |
| OBSCN | CAPN3 | P20807 | 685 |
| OBSCN | FHL2 | Q14192 | 667 |
| OBSCN | MYBPC1 | Q00872 | 647 |
| OBSCN | TRIM63 | Q969Q1 | 624 |
| OBSCN | NBR1 | Q14596 | 619 |
| OBSCN | TMOD3 | Q9NYL9 | 597 |
| OBSCN | SYNE1 | Q8NF91 | 591 |
IntAct
38 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TTN | OBSCN | psi-mi:“MI:0915”(physical association) | 0.850 |
| TTN | OBSCN | psi-mi:“MI:0407”(direct interaction) | 0.850 |
| OBSCN | TTN | psi-mi:“MI:0407”(direct interaction) | 0.850 |
| OBSCN | TTN | psi-mi:“MI:0915”(physical association) | 0.850 |
| AP2B1 | OBSCN | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| OBSCN | Dlg4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| OBSCN | H2BC21 | psi-mi:“MI:0915”(physical association) | 0.400 |
| OBSCN | TCOF1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CALM1 | OBSCN | psi-mi:“MI:0915”(physical association) | 0.400 |
| OBSCN | psi-mi:“MI:0915”(physical association) | 0.370 | |
| Ank3 | OBSCN | psi-mi:“MI:0915”(physical association) | 0.370 |
| Vps28 | UMAD1 | psi-mi:“MI:0914”(association) | 0.350 |
| BTBD8 | HSPA8 | psi-mi:“MI:0914”(association) | 0.350 |
| LCOR | psi-mi:“MI:0914”(association) | 0.350 | |
| HNRNPD | ARHGAP32 | psi-mi:“MI:0914”(association) | 0.350 |
| ATXN1 | psi-mi:“MI:0914”(association) | 0.350 | |
| FGFR1 | POLRMT | psi-mi:“MI:0914”(association) | 0.350 |
| OBSCN | HMGN1 | psi-mi:“MI:0914”(association) | 0.350 |
| MLKL | IMPDH2 | psi-mi:“MI:0914”(association) | 0.350 |
| BRSK1 | ANKRD28 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (90): OBSCN (Affinity Capture-RNA), OBSCN (Affinity Capture-RNA), BRCA1 (Two-hybrid), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS), OBSCN (Affinity Capture-MS)
ESM2 similar proteins: A2AAJ9, A2ABU4, A2RUH7, B4GBH0, D3ZGQ5, O09127, O70468, O75038, O88599, O95382, P16419, P21709, P22455, P22607, P29322, P54760, P54761, P55144, P55146, P56741, P70218, P70402, Q00653, Q06418, Q13203, Q13308, Q13425, Q14896, Q15746, Q290N5, Q32P44, Q4LDD4, Q5FW53, Q5PQM4, Q5VST9, Q5VTT5, Q60750, Q61851, Q68LP1, Q80UW5
Diamond homologs: A0A087WV53, A2AAJ9, A2ASS6, A2RUH7, O75147, O94856, O94898, P05548, P52179, P54296, P97685, Q00872, Q23551, Q52KR2, Q5VST9, Q62234, Q80W87, Q810U3, Q8WX93, Q92626, A0A509AFG4, A0A5K1K8H0, A2ZVI7, A4IFM7, A8C984, A8WXF6, B9FKW9, C0HKC8, C0HKC9, E9PT87, O02827, O43293, O44997, O54784, O62305, O70150, O80673, O88764, O94768, P07313
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| OBSCN | “up-regulates quantity” | ANK2 | relocalization |
| MYOM1 | “up-regulates quantity” | OBSCN | relocalization |
| TTN | “up-regulates quantity” | OBSCN | relocalization |
Disease & clinical
Clinical variants and AI predictions
ClinVar
5888 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 32 |
| Likely pathogenic | 24 |
| Uncertain significance | 3125 |
| Likely benign | 2212 |
| Benign | 209 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 2045087 | NM_001386125.1(OBSCN):c.10977C>G (p.Tyr3659Ter) | Pathogenic |
| 2049259 | NM_001386125.1(OBSCN):c.4132C>T (p.Gln1378Ter) | Pathogenic |
| 2056609 | NM_001386125.1(OBSCN):c.3727C>T (p.Gln1243Ter) | Pathogenic |
| 2065665 | NM_001386125.1(OBSCN):c.4465C>T (p.Arg1489Ter) | Pathogenic |
| 2071269 | NM_001386125.1(OBSCN):c.1120del (p.Ala374fs) | Pathogenic |
| 2080916 | NM_001386125.1(OBSCN):c.14599_14605del (p.Gln4867fs) | Pathogenic |
| 2081444 | NM_001386125.1(OBSCN):c.15203del (p.Ala5068fs) | Pathogenic |
| 2148266 | NM_001386125.1(OBSCN):c.21392del (p.Lys7131fs) | Pathogenic |
| 2153371 | NM_001386125.1(OBSCN):c.19607C>G (p.Ser6536Ter) | Pathogenic |
| 2155198 | NM_001386125.1(OBSCN):c.12943_12944del (p.Arg4315fs) | Pathogenic |
| 2159621 | NM_001386125.1(OBSCN):c.15015C>A (p.Tyr5005Ter) | Pathogenic |
| 2159972 | NM_001386125.1(OBSCN):c.14731dup (p.Glu4911fs) | Pathogenic |
| 2160257 | NM_001386125.1(OBSCN):c.10464del (p.Tyr3489fs) | Pathogenic |
| 2162106 | NM_001386125.1(OBSCN):c.18985C>T (p.Arg6329Ter) | Pathogenic |
| 2165285 | NM_001386125.1(OBSCN):c.19744dup (p.Glu6582fs) | Pathogenic |
| 2167363 | NM_001386125.1(OBSCN):c.12396_12402del (p.Ser4133fs) | Pathogenic |
| 2175942 | NM_001386125.1(OBSCN):c.3805C>T (p.Gln1269Ter) | Pathogenic |
| 2184373 | NM_001386125.1(OBSCN):c.10616del (p.Gly3539fs) | Pathogenic |
| 2187302 | NM_001386125.1(OBSCN):c.4260C>A (p.Tyr1420Ter) | Pathogenic |
| 2193867 | NM_001386125.1(OBSCN):c.16732_16738del (p.Lys5578fs) | Pathogenic |
| 2194385 | NM_001386125.1(OBSCN):c.17056G>T (p.Glu5686Ter) | Pathogenic |
| 2200745 | NM_001386125.1(OBSCN):c.12151_12152del (p.Arg4051fs) | Pathogenic |
| 225034 | NM_001386125.1(OBSCN):c.21291-7_21294del | Pathogenic |
| 2442246 | NM_001386125.1(OBSCN):c.24822C>A (p.Tyr8274Ter) | Pathogenic |
| 2819527 | NM_001386125.1(OBSCN):c.6313del (p.Val2105fs) | Pathogenic |
| 3234537 | NM_001386125.1(OBSCN):c.9434_9438del (p.Tyr3145fs) | Pathogenic |
| 3620076 | NM_001386125.1(OBSCN):c.9558_9559insT (p.Val3187fs) | Pathogenic |
| 3628988 | NM_001386125.1(OBSCN):c.17566dup (p.Met5856fs) | Pathogenic |
| 3772679 | NM_001386125.1(OBSCN):c.708del (p.Ala237fs) | Pathogenic |
| 3774599 | NM_001386125.1(OBSCN):c.2029C>A (p.Leu677Met) | Pathogenic |
SpliceAI
20680 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:228211763:CAGGT:C | acceptor_loss | 1.0000 |
| 1:228211764:AGG:A | acceptor_loss | 1.0000 |
| 1:228214290:G:GT | donor_gain | 1.0000 |
| 1:228214884:T:TA | acceptor_gain | 1.0000 |
| 1:228215094:CCTGG:C | donor_gain | 1.0000 |
| 1:228215095:CTGG:C | donor_gain | 1.0000 |
| 1:228215096:TGGGT:T | donor_loss | 1.0000 |
| 1:228215097:GG:G | donor_gain | 1.0000 |
| 1:228215098:GG:G | donor_gain | 1.0000 |
| 1:228215099:G:GA | donor_loss | 1.0000 |
| 1:228215100:T:G | donor_loss | 1.0000 |
| 1:228215561:A:AG | acceptor_gain | 1.0000 |
| 1:228215562:G:GG | acceptor_gain | 1.0000 |
| 1:228215826:CGGGG:C | donor_loss | 1.0000 |
| 1:228215827:GGGGT:G | donor_loss | 1.0000 |
| 1:228215828:GG:G | donor_gain | 1.0000 |
| 1:228215828:GGGT:G | donor_loss | 1.0000 |
| 1:228215829:GG:G | donor_gain | 1.0000 |
| 1:228215830:GT:G | donor_loss | 1.0000 |
| 1:228215831:TAGGT:T | donor_loss | 1.0000 |
| 1:228216704:T:A | donor_loss | 1.0000 |
| 1:228217010:CAGGC:C | acceptor_loss | 1.0000 |
| 1:228217011:A:AG | acceptor_gain | 1.0000 |
| 1:228217011:AGG:A | acceptor_loss | 1.0000 |
| 1:228217012:G:GC | acceptor_loss | 1.0000 |
| 1:228217012:G:GG | acceptor_gain | 1.0000 |
| 1:228225479:A:AG | acceptor_gain | 1.0000 |
| 1:228225479:AAAT:A | acceptor_gain | 1.0000 |
| 1:228225480:A:G | acceptor_gain | 1.0000 |
| 1:228243456:CAGGT:C | donor_loss | 1.0000 |
AlphaMissense
57661 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:228211910:T:A | W43R | 1.000 |
| 1:228211910:T:C | W43R | 1.000 |
| 1:228212594:T:A | W271R | 1.000 |
| 1:228212594:T:C | W271R | 1.000 |
| 1:228212670:T:C | L296P | 1.000 |
| 1:228211818:T:C | F12S | 0.999 |
| 1:228211874:T:C | C31R | 0.999 |
| 1:228211911:G:C | W43S | 0.999 |
| 1:228211912:G:C | W43C | 0.999 |
| 1:228211912:G:T | W43C | 0.999 |
| 1:228211983:T:C | L67P | 0.999 |
| 1:228212021:T:G | Y80D | 0.999 |
| 1:228212027:T:C | C82R | 0.999 |
| 1:228212169:T:C | F129S | 0.999 |
| 1:228212210:T:A | W143R | 0.999 |
| 1:228212210:T:C | W143R | 0.999 |
| 1:228212212:G:C | W143C | 0.999 |
| 1:228212212:G:T | W143C | 0.999 |
| 1:228212327:T:G | Y182D | 0.999 |
| 1:228212553:T:C | L257P | 0.999 |
| 1:228212595:G:C | W271S | 0.999 |
| 1:228212596:G:C | W271C | 0.999 |
| 1:228212596:G:T | W271C | 0.999 |
| 1:228212708:T:G | Y309D | 0.999 |
| 1:228212714:T:C | C311R | 0.999 |
| 1:228213545:T:A | W365R | 0.999 |
| 1:228213545:T:C | W365R | 0.999 |
| 1:228275864:T:A | W2020R | 0.999 |
| 1:228275864:T:C | W2020R | 0.999 |
| 1:228279282:T:A | W2412R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000039092 (1:228263532 C>T), RS1000065029 (1:228251507 C>G,T), RS1000082028 (1:228326828 T>C), RS1000084175 (1:228290362 G>A), RS1000095882 (1:228363113 G>A,C), RS1000119546 (1:228362896 T>A,C), RS1000136154 (1:228290594 A>G), RS1000145456 (1:228356363 CA>C), RS1000175386 (1:228255032 C>A,T), RS1000180160 (1:228375354 G>A), RS1000183877 (1:228305597 G>A), RS1000188949 (1:228311549 C>G), RS1000208720 (1:228238945 C>T), RS1000219193 (1:228278088 C>T), RS1000225504 (1:228291779 C>T)
Disease associations
OMIM: gene MIM:608616 | disease phenotypes: MIM:620235, MIM:620238, MIM:192600, MIM:609040
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| rhabdomyolysis, susceptibility to, 1 | Strong | Autosomal recessive |
| rhabdomyolysis | Strong | Autosomal recessive |
| hypertrophic cardiomyopathy | Limited | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| hypertrophic cardiomyopathy | Limited | AD |
| dilated cardiomyopathy | Limited | AD |
Mondo (7): rhabdomyolysis, susceptibility to, 1 (MONDO:0859371), hearing loss, autosomal recessive 120 (MONDO:0859374), cardiomyopathy (MONDO:0004994), hypertrophic cardiomyopathy 1 (MONDO:0008647), arrhythmogenic right ventricular dysplasia 9 (MONDO:0012180), hypertrophic cardiomyopathy (MONDO:0005045), (MONDO:0005290)
Orphanet (1): Rare cardiomyopathy (Orphanet:167848)
HPO phenotypes
44 total (30 of 44 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000083 | Renal insufficiency |
| HP:0000467 | Neck muscle weakness |
| HP:0001288 | Gait disturbance |
| HP:0001315 | Reduced tendon reflexes |
| HP:0001324 | Muscle weakness |
| HP:0001919 | Acute kidney injury |
| HP:0001945 | Fever |
| HP:0002153 | Hyperkalemia |
| HP:0002167 | Abnormal speech pattern |
| HP:0002460 | Distal muscle weakness |
| HP:0002901 | Hypocalcemia |
| HP:0002905 | Hyperphosphatemia |
| HP:0002910 | Elevated circulating hepatic transaminase concentration |
| HP:0003201 | Rhabdomyolysis |
| HP:0003236 | Elevated circulating creatine kinase concentration |
| HP:0003326 | Myalgia |
| HP:0003394 | Muscle spasm |
| HP:0003546 | Exercise intolerance |
| HP:0003554 | Type 2 muscle fiber atrophy |
| HP:0003557 | Increased variability in muscle fiber diameter |
| HP:0003558 | Viral infection-induced rhabdomyolysis |
| HP:0003621 | Juvenile onset |
| HP:0003652 | Recurrent myoglobinuria |
| HP:0003687 | Centrally nucleated skeletal muscle fibers |
| HP:0003738 | Exercise-induced myalgia |
| HP:0005216 | Impaired mastication |
| HP:0005521 | Disseminated intravascular coagulation |
| HP:0007340 | Lower limb muscle weakness |
| HP:0008305 | Exercise-induced myoglobinuria |
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006276_1 | Non-Richardson’s syndrome vs Richardson’s syndrome in progressive supranuclear palsy | 2.000000e-09 |
| GCST007045_15 | PR interval | 7.000000e-10 |
| GCST008058_25 | Estimated glomerular filtration rate | 6.000000e-09 |
| GCST008059_212 | Estimated glomerular filtration rate | 3.000000e-08 |
| GCST010321_102 | PR interval | 3.000000e-10 |
| GCST010796_2229 | Electrocardiogram morphology (amplitude at temporal datapoints) | 1.000000e-09 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004462 | PR interval |
| EFO:0004327 | electrocardiography |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D009202 | Cardiomyopathies | C14.280.238 |
| D002312 | Cardiomyopathy, Hypertrophic | C14.280.238.100; C14.280.484.048.750.070.160 |
| D012206 | Rhabdomyolysis | C05.651.807 |
| C563808 | Arrhythmogenic Right Ventricular Dysplasia, Familial, 9 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — Trio family
CTD chemical–gene interactions
43 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | decreases methylation, increases expression, affects cotreatment, increases methylation, decreases expression | 3 |
| Benzo(a)pyrene | affects methylation, decreases methylation | 2 |
| Silicon Dioxide | increases expression, decreases expression, increases methylation | 2 |
| Valproic Acid | affects cotreatment, increases expression, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| sotorasib | affects cotreatment, decreases expression | 1 |
| 2,4,6-tribromophenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| titanium dioxide | decreases expression | 1 |
| decabromobiphenyl ether | decreases expression | 1 |
| arsenite | affects binding, decreases reaction | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| tetrabromobisphenol A | increases expression | 1 |
| benzo(e)pyrene | affects methylation, increases methylation | 1 |
| aflatoxin B2 | increases methylation | 1 |
| tebuconazole | decreases expression | 1 |
| abrine | decreases expression | 1 |
| 2,2’,4,4’-tetrabromodiphenyl ether | decreases expression | 1 |
| pentabrominated diphenyl ether 100 | decreases expression | 1 |
| hexabrominated diphenyl ether 153 | decreases expression | 1 |
| trametinib | affects cotreatment, decreases expression | 1 |
| NVP-BKM120 | affects cotreatment, decreases expression | 1 |
| Bortezomib | decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Arsenic | affects methylation | 1 |
| Calcitriol | increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Doxorubicin | decreases expression | 1 |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1ZG | Abcam HeLa OBSCN KO | Cancer cell line | Female |
| CVCL_TB54 | HAP1 OBSCN (-) 1 | Cancer cell line | Male |
| CVCL_TB55 | HAP1 OBSCN (-) 2 | Cancer cell line | Male |
| CVCL_TB56 | HAP1 OBSCN (-) 3 | Cancer cell line | Male |
Clinical trials (associated diseases)
520 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00879060 | PHASE4 | COMPLETED | Clinical and Therapeutic Implications of Fibrosis in Hypertrophic Cardiomyopathy |
| NCT01721967 | PHASE4 | COMPLETED | Ranolazine for the Treatment of Chest Pain in HCM Patients |
| NCT02948998 | PHASE4 | UNKNOWN | Evaluating the Effect of Spironolactone on Hypertrophic Cardiomyopathy |
| NCT03249272 | PHASE4 | TERMINATED | Microvascular Dysfunction in Nonischemic Cardiomyopathy: Insights From CMR Assessment of Coronary Flow Reserve |
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Related Atlas pages
- Associated diseases: hypertrophic cardiomyopathy, rhabdomyolysis, susceptibility to, 1, dilated cardiomyopathy
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): arrhythmogenic right ventricular dysplasia 9, cardiomyopathy, hearing loss, autosomal recessive 120, hypertrophic cardiomyopathy, hypertrophic cardiomyopathy 1, progressive supranuclear palsy, rhabdomyolysis, susceptibility to, 1