ODAD4
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Also known as DKFZP434H0115
Summary
ODAD4 (outer dynein arm docking complex subunit 4, HGNC:25280) is a protein-coding gene on chromosome 17q21.2, encoding Outer dynein arm-docking complex subunit 4 (Q96NG3). Component of the outer dynein arm-docking complex (ODA-DC) that mediates outer dynein arms (ODA) binding onto the doublet microtubule.
This gene encodes a tetratricopeptide repeat domain-containing protein that localizes to ciliary axonmenes and plays a role in the docking of the outer dynein arm to cilia. Mutations in this gene cause severely reduced ciliary motility and the disorder CILD35 (ciliary dyskinesia,primary, 35). Primary ciliary dyskinesia is often associated with recurrent respiratory infections, immotile spermatozoa, and situs inversus; an inversion in left-right body symmetry. Alternative splicing results in multiple transcript variants encoding distinct isoforms.
Source: NCBI Gene 83538 — RefSeq curated summary.
At a glance
- Gene–disease (curated): primary ciliary dyskinesia 35 (Definitive, ClinGen) — +1 more curated relationship
- GWAS associations: 1
- Clinical variants (ClinVar): 94 total — 7 pathogenic, 5 likely-pathogenic
- Phenotypes (HPO): 52
- MANE Select transcript:
NM_031421
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25280 |
| Approved symbol | ODAD4 |
| Name | outer dynein arm docking complex subunit 4 |
| Location | 17q21.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZP434H0115 |
| Ensembl gene | ENSG00000204815 |
| Ensembl biotype | protein_coding |
| OMIM | 617095 |
| Entrez | 83538 |
Gene structure
Transcript identifiers
Ensembl transcripts: 6 — 3 protein_coding, 3 nonsense_mediated_decay
ENST00000377540, ENST00000585530, ENST00000591658, ENST00000593239, ENST00000918347, ENST00000918348
RefSeq mRNA: 2 — MANE Select: NM_031421
NM_001350319, NM_031421
CCDS: CCDS74063
Canonical transcript exons
ENST00000377540 — 12 exons
| Exon | Start | End |
|---|---|---|
| ENSE00002810599 | 41938557 | 41938781 |
| ENSE00002833837 | 41930617 | 41930837 |
| ENSE00002859128 | 41938965 | 41939172 |
| ENSE00002931791 | 41955217 | 41955317 |
| ENSE00002972548 | 41945136 | 41945222 |
| ENSE00003487909 | 41936473 | 41936534 |
| ENSE00003626768 | 41936762 | 41936927 |
| ENSE00003726744 | 41949153 | 41949349 |
| ENSE00003728868 | 41935599 | 41935749 |
| ENSE00003731512 | 41964993 | 41966503 |
| ENSE00003745237 | 41961382 | 41961466 |
| ENSE00003750318 | 41935217 | 41935348 |
Expression profiles
Bgee: expression breadth ubiquitous, 196 present calls, max score 95.59.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.1104 / max 106.0050, expressed in 1074 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 160887 | 2.7560 | 1014 |
| 160888 | 0.3543 | 165 |
Top tissues by expression
245 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right uterine tube | UBERON:0001302 | 95.59 | gold quality |
| bronchial epithelial cell | CL:0002328 | 95.37 | gold quality |
| sperm | CL:0000019 | 94.80 | gold quality |
| oviduct epithelium | UBERON:0004804 | 94.64 | gold quality |
| bronchus | UBERON:0002185 | 94.42 | gold quality |
| pancreatic ductal cell | CL:0002079 | 93.05 | gold quality |
| left testis | UBERON:0004533 | 90.45 | gold quality |
| right testis | UBERON:0004534 | 89.66 | gold quality |
| olfactory segment of nasal mucosa | UBERON:0005386 | 89.60 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 89.05 | gold quality |
| testis | UBERON:0000473 | 88.65 | gold quality |
| endothelial cell | CL:0000115 | 86.56 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 86.42 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 85.78 | gold quality |
| fallopian tube | UBERON:0003889 | 85.39 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 78.84 | gold quality |
| nasal cavity epithelium | UBERON:0005384 | 77.84 | silver quality |
| adenohypophysis | UBERON:0002196 | 76.57 | gold quality |
| pituitary gland | UBERON:0000007 | 75.16 | gold quality |
| ventricular zone | UBERON:0003053 | 74.94 | gold quality |
| buccal mucosa cell | CL:0002336 | 74.76 | silver quality |
| hypothalamus | UBERON:0001898 | 74.46 | gold quality |
| tendon | UBERON:0000043 | 74.43 | gold quality |
| caput epididymis | UBERON:0004358 | 72.85 | gold quality |
| medial globus pallidus | UBERON:0002477 | 72.49 | gold quality |
| caudate nucleus | UBERON:0001873 | 71.93 | gold quality |
| islet of Langerhans | UBERON:0000006 | 71.84 | gold quality |
| nasal cavity mucosa | UBERON:0001826 | 71.73 | gold quality |
| nucleus accumbens | UBERON:0001882 | 71.61 | gold quality |
| cortical plate | UBERON:0005343 | 70.99 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 9.47 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
15 targeting ODAD4, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-16-5P | 99.90 | 72.80 | 2780 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
| HSA-MIR-195-5P | 99.90 | 72.81 | 2805 |
| HSA-MIR-424-5P | 99.89 | 71.90 | 2641 |
| HSA-MIR-6838-5P | 99.89 | 71.94 | 2690 |
| HSA-MIR-5197-5P | 99.64 | 69.08 | 1494 |
| HSA-MIR-605-5P | 98.79 | 68.24 | 1161 |
| HSA-MIR-6072 | 98.00 | 66.47 | 804 |
| HSA-MIR-337-3P | 97.90 | 69.37 | 1052 |
Literature-anchored findings (GeneRIF, showing 3)
- report of TTC25 as a new member of the outer dynein arms docking machinery in humans and mice (PMID:27486780)
- TTC25 variants are associated with quantitative autistic trait in patients with autism spectrum disorder. Variants in TTC25 may also be relevant for broader ASD phenotype in the general population. (PMID:28513607)
- Clustering of Genetic Anomalies of Cilia Outer Dynein Arm and Central Apparatus in Patients with Transposition of the Great Arteries. (PMID:36140829)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | odad4 | ENSDARG00000058140 |
| mus_musculus | Odad4 | ENSMUSG00000006784 |
| rattus_norvegicus | Odad4 | ENSRNOG00000017473 |
| drosophila_melanogaster | CG13502 | FBGN0034692 |
Protein
Protein identifiers
Outer dynein arm-docking complex subunit 4 — Q96NG3 (reviewed: Q96NG3)
Alternative names: Tetratricopeptide repeat protein 25
All UniProt accessions (4): A0A087WTJ8, A0A087WVI5, A0A087X2G9, Q96NG3
UniProt curated annotations — full annotation on UniProt →
Function. Component of the outer dynein arm-docking complex (ODA-DC) that mediates outer dynein arms (ODA) binding onto the doublet microtubule. Plays an essential role for the assembly of ODA-DC and for the docking of ODA in ciliary axoneme.
Subunit / interactions. Component of the outer dynein arm-docking complex along with ODAD1, ODAD2 and ODAD3. Interacts with ODAD1; this interaction may facilitate the recruitment and/or attachment of outer dynein arm docking complex proteins, including ODAD1, ODAD3 and ODAD2, to ciliary axonemes. Interacts with components of the IFT complex A, including IFT140, TTC21B/IFT139 and WDR19/IFT144, and the IFT complex B, including IFT46, IFT52 and IFT57. Interacts with CFAP53.
Subcellular location. Cytoplasm. Cytoskeleton. Cilium axoneme.
Tissue specificity. Expressed in the nasal mucosa (at protein level).
Disease relevance. Ciliary dyskinesia, primary, 35 (CILD35) [MIM:617092] A form of primary ciliary dyskinesia, a disorder characterized by abnormalities of motile cilia. Respiratory infections leading to chronic inflammation and bronchiectasis are recurrent, due to defects in the respiratory cilia. Some patients exhibit randomization of left-right body asymmetry and situs inversus. Primary ciliary dyskinesia associated with situs inversus is referred to as Kartagener syndrome. CILD35 inheritance is autosomal recessive. The disease is caused by variants affecting the gene represented in this entry.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96NG3-1 | 1 | yes |
| Q96NG3-2 | 2 |
RefSeq proteins (2): NP_001337248, NP_113609* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Homologous_superfamily |
| IPR019734 | TPR_rpt | Repeat |
| IPR040111 | ODAD4 | Family |
Pfam: PF13181
UniProt features (20 total): repeat 8, compositionally biased region 4, splice variant 2, sequence variant 2, sequence conflict 2, chain 1, region of interest 1
Structure
Experimental structures (PDB)
1 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8J07 | ELECTRON MICROSCOPY | 4.1 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96NG3-F1 | 72.05 | 0.45 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 0 (showing top):
GO Biological Process (9): cilium movement (GO:0003341), brain development (GO:0007420), heart development (GO:0007507), lung development (GO:0030324), outer dynein arm assembly (GO:0036158), epithelial cilium movement involved in determination of left/right asymmetry (GO:0060287), cerebrospinal fluid circulation (GO:0090660), mucociliary clearance (GO:0120197), protein localization to motile cilium (GO:0120229)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (9): extracellular region (GO:0005576), cytoplasm (GO:0005737), axoneme (GO:0005930), 9+0 motile cilium (GO:0097728), 9+2 motile cilium (GO:0097729), outer dynein arm docking complex (GO:0120228), cytoskeleton (GO:0005856), cilium (GO:0005929), cell projection (GO:0042995)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| animal organ development | 3 |
| epithelial cilium movement involved in extracellular fluid movement | 3 |
| motile cilium | 2 |
| inner dynein arm | 2 |
| outer dynein arm | 2 |
| axonemal doublet microtubule | 2 |
| microtubule-based movement | 1 |
| central nervous system development | 1 |
| head development | 1 |
| circulatory system development | 1 |
| respiratory tube development | 1 |
| respiratory system development | 1 |
| axonemal dynein complex assembly | 1 |
| determination of left/right symmetry | 1 |
| nervous system process | 1 |
| respiratory system process | 1 |
| protein localization to cilium | 1 |
| binding | 1 |
| intracellular anatomical structure | 1 |
| cytoskeleton | 1 |
| microtubule | 1 |
| ciliary plasm | 1 |
| radial spoke | 1 |
| axonemal central pair | 1 |
| axoneme | 1 |
| protein-containing complex | 1 |
| intracellular membraneless organelle | 1 |
| intraciliary transport particle | 1 |
| membrane-bounded organelle | 1 |
| plasma membrane bounded cell projection | 1 |
Protein interactions and networks
STRING
1852 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ODAD4 | ODAD3 | A5D8V7 | 896 |
| ODAD4 | ODAD2 | Q5T2S8 | 886 |
| ODAD4 | ODAD1 | Q96M63 | 873 |
| ODAD4 | DNAI1 | Q9UI46 | 709 |
| ODAD4 | DNAAF4 | Q8WXU2 | 698 |
| ODAD4 | DRC7 | Q8IY82 | 698 |
| ODAD4 | DNAI2 | Q9GZS0 | 636 |
| ODAD4 | DNAAF6 | Q9NQM4 | 620 |
| ODAD4 | LRRC56 | Q8IYG6 | 616 |
| ODAD4 | DNAH5 | Q8TE73 | 609 |
| ODAD4 | DNAAF19 | Q8IW40 | 606 |
| ODAD4 | DNAAF5 | Q86Y56 | 594 |
| ODAD4 | CCDC63 | Q8NA47 | 592 |
| ODAD4 | DNALI1 | O14645 | 590 |
| ODAD4 | DNAH11 | Q96DT5 | 583 |
IntAct
32 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| MEOX2 | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| NECAB2 | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | MYOG | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | GOLGA2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | MKRN3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CCDC85B | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRT40 | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CEP70 | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | MEOX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MYOG | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| GOLGA2 | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MKRN3 | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | CCDC85B | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | CEP70 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | KRT40 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | NECAB2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ODAD4 | GNPAT | psi-mi:“MI:0914”(association) | 0.530 |
| TMEM214 | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.400 |
| ODAD4 | NCAPH2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| MDFI | ODAD4 | psi-mi:“MI:0915”(physical association) | 0.370 |
| COL10A1 | CRTAP | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (39): TTC25 (Two-hybrid), TTC25 (Two-hybrid), TTC25 (Two-hybrid), TTC25 (Two-hybrid), TTC25 (Two-hybrid), TTC25 (Two-hybrid), TTC25 (Two-hybrid), KRT40 (Two-hybrid), TTC25 (Two-hybrid), TTC25 (Two-hybrid), NEK1 (Affinity Capture-MS), C21orf2 (Affinity Capture-MS), GNPAT (Affinity Capture-MS), TTLL5 (Affinity Capture-MS), YME1L1 (Affinity Capture-MS)
ESM2 similar proteins: A0JMA8, A1A5P5, A2A6Q5, A6QNM3, A7Z061, E7F187, E9Q6P5, F7BJB9, O13046, O76094, P09798, P10505, P17885, P30260, P33731, P38042, P41889, Q05B30, Q06AN9, Q07617, Q13099, Q13416, Q32NR4, Q32NU8, Q3UMY5, Q4R6M4, Q4V8A2, Q5R629, Q5RE52, Q5TYV4, Q5U245, Q5ZKQ3, Q61371, Q6NU95, Q6PA97, Q6XV80, Q7Z3E5, Q7ZUV2, Q86TV6, Q8BGB2
Diamond homologs: A5PK42, Q32NU8, Q5WA76, Q7ZU45, Q96NG3, Q9D4B2, O35814, O54981, P31948, Q3ZBZ8, Q4R8N7, Q60864, Q8VWG7, Q43468
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| CFAP53 | “up-regulates activity” | ODAD4 | binding |
| ODAD4 | “up-regulates activity” | Axonemal_Dynein | binding |
| ODAD4 | up-regulates | Cilium_movement |
Disease & clinical
Clinical variants and AI predictions
ClinVar
94 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 7 |
| Likely pathogenic | 5 |
| Uncertain significance | 52 |
| Likely benign | 10 |
| Benign | 8 |
Top pathogenic / likely-pathogenic (12)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1065353 | NM_031421.5(ODAD4):c.1979del (p.Thr660fs) | Pathogenic |
| 254127 | NM_031421.5(ODAD4):c.114+1G>T | Pathogenic |
| 254128 | NM_031421.5(ODAD4):c.425_426insT (p.Lys142fs) | Pathogenic |
| 2631366 | NM_031421.5(ODAD4):c.459+1G>A | Pathogenic |
| 3893221 | NM_031421.5(ODAD4):c.716G>A (p.Trp239Ter) | Pathogenic |
| 4292842 | NM_031421.5(ODAD4):c.650_653dup (p.Leu219fs) | Pathogenic |
| 869383 | NM_031421.5(ODAD4):c.245del (p.Lys82fs) | Pathogenic |
| 1325249 | NM_031421.5(ODAD4):c.316C>T (p.Arg106Ter) | Likely pathogenic |
| 2631558 | NM_031421.5(ODAD4):c.397+1G>A | Likely pathogenic |
| 2671845 | NM_031421.5(ODAD4):c.704dup (p.His235fs) | Likely pathogenic |
| 2690771 | NM_031421.5(ODAD4):c.1630G>T (p.Asp544Tyr) | Likely pathogenic |
| 4849438 | NM_031421.5(ODAD4):c.1528+1del | Likely pathogenic |
SpliceAI
2027 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:41930833:GCAAC:G | donor_gain | 1.0000 |
| 17:41930834:CAACG:C | donor_loss | 1.0000 |
| 17:41930836:AC:A | donor_gain | 1.0000 |
| 17:41930836:ACGT:A | donor_loss | 1.0000 |
| 17:41930837:CG:C | donor_loss | 1.0000 |
| 17:41930838:G:GA | donor_loss | 1.0000 |
| 17:41930838:G:GG | donor_gain | 1.0000 |
| 17:41930839:T:A | donor_loss | 1.0000 |
| 17:41935344:G:GG | donor_gain | 1.0000 |
| 17:41935597:AGGG:A | acceptor_gain | 1.0000 |
| 17:41935598:GGGG:G | acceptor_gain | 1.0000 |
| 17:41935725:G:GT | donor_gain | 1.0000 |
| 17:41935744:TGGG:T | donor_gain | 1.0000 |
| 17:41935745:GGGAA:G | donor_gain | 1.0000 |
| 17:41935746:GGAA:G | donor_gain | 1.0000 |
| 17:41935746:GGAAG:G | donor_gain | 1.0000 |
| 17:41935747:G:T | donor_gain | 1.0000 |
| 17:41935747:GAA:G | donor_gain | 1.0000 |
| 17:41935747:GAAG:G | donor_gain | 1.0000 |
| 17:41935750:G:GG | donor_gain | 1.0000 |
| 17:41936468:TGCA:T | acceptor_loss | 1.0000 |
| 17:41936469:GCAG:G | acceptor_loss | 1.0000 |
| 17:41936470:CA:C | acceptor_loss | 1.0000 |
| 17:41936471:A:AG | acceptor_gain | 1.0000 |
| 17:41936472:G:A | acceptor_loss | 1.0000 |
| 17:41936472:G:GC | acceptor_gain | 1.0000 |
| 17:41936472:GGT:G | acceptor_gain | 1.0000 |
| 17:41936472:GGTC:G | acceptor_gain | 1.0000 |
| 17:41936533:AGGTA:A | donor_loss | 1.0000 |
| 17:41936535:G:GA | donor_loss | 1.0000 |
AlphaMissense
4428 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:41949218:G:A | G404D | 1.000 |
| 17:41949343:G:C | A446P | 1.000 |
| 17:41939093:G:T | G327W | 0.999 |
| 17:41939094:G:A | G327E | 0.999 |
| 17:41945177:G:A | G367D | 0.999 |
| 17:41949154:T:A | W383R | 0.999 |
| 17:41949154:T:C | W383R | 0.999 |
| 17:41949203:T:C | L399P | 0.999 |
| 17:41949217:G:C | G404R | 0.999 |
| 17:41949221:G:C | R405P | 0.999 |
| 17:41949266:G:A | G420D | 0.999 |
| 17:41949310:T:A | W435R | 0.999 |
| 17:41949310:T:C | W435R | 0.999 |
| 17:41949312:G:C | W435C | 0.999 |
| 17:41949312:G:T | W435C | 0.999 |
| 17:41949317:T:C | L437P | 0.999 |
| 17:41949322:G:C | A439P | 0.999 |
| 17:41949332:T:C | L442P | 0.999 |
| 17:41949338:C:A | A444D | 0.999 |
| 17:41955252:T:C | F460L | 0.999 |
| 17:41955254:T:A | F460L | 0.999 |
| 17:41955254:T:G | F460L | 0.999 |
| 17:41955261:G:C | A463P | 0.999 |
| 17:41955273:G:C | A467P | 0.999 |
| 17:41939003:G:C | A297P | 0.998 |
| 17:41939094:G:T | G327V | 0.998 |
| 17:41945165:T:C | L363P | 0.998 |
| 17:41945176:G:C | G367R | 0.998 |
| 17:41945189:C:A | A371D | 0.998 |
| 17:41945212:G:C | A379P | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000039535 (17:41957889 A>C,G), RS1000054335 (17:41952300 G>A), RS1000387628 (17:41945241 C>A,T), RS1000598904 (17:41956206 G>A), RS1000665428 (17:41957547 A>T), RS1001591953 (17:41935415 G>T), RS1001700917 (17:41942233 G>A,T), RS1001861593 (17:41933809 G>A), RS1001927760 (17:41935760 A>T), RS1002037608 (17:41940852 C>T), RS1002149034 (17:41940426 G>A), RS1002174220 (17:41954000 T>C), RS1002331189 (17:41946604 C>T), RS1002393514 (17:41953701 T>G), RS1002624500 (17:41946951 C>A,T)
Disease associations
OMIM: gene MIM:617095 | disease phenotypes: MIM:617092, MIM:244400
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| primary ciliary dyskinesia 35 | Strong | Autosomal recessive |
| primary ciliary dyskinesia | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (1)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| primary ciliary dyskinesia 35 | Definitive | AR |
Mondo (2): primary ciliary dyskinesia 35 (MONDO:0014910), primary ciliary dyskinesia (MONDO:0016575)
Orphanet (2): Primary ciliary dyskinesia (Orphanet:244), Situs ambiguus (Orphanet:157769)
HPO phenotypes
52 total (30 of 52 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000119 | Abnormality of the genitourinary system |
| HP:0000238 | Hydrocephalus |
| HP:0000365 | Hearing impairment |
| HP:0000389 | Chronic otitis media |
| HP:0000403 | Recurrent otitis media |
| HP:0000405 | Conductive hearing impairment |
| HP:0000510 | Rod-cone dystrophy |
| HP:0000750 | Delayed speech and language development |
| HP:0000924 | Abnormality of the skeletal system |
| HP:0001217 | Clubbing |
| HP:0001627 | Abnormal heart morphology |
| HP:0001669 | Transposition of the great arteries |
| HP:0001696 | Situs inversus totalis |
| HP:0001719 | Double outlet right ventricle |
| HP:0001742 | Nasal congestion |
| HP:0001746 | Asplenia |
| HP:0001748 | Polysplenia |
| HP:0002011 | Morphological central nervous system abnormality |
| HP:0002110 | Bronchiectasis |
| HP:0002119 | Ventriculomegaly |
| HP:0002257 | Chronic rhinitis |
| HP:0002566 | Intestinal malrotation |
| HP:0002643 | Neonatal respiratory distress |
| HP:0002878 | Respiratory failure |
| HP:0003251 | Male infertility |
| HP:0003623 | Neonatal onset |
| HP:0005301 | Persistent left superior vena cava |
| HP:0005425 | Recurrent sinopulmonary infections |
| HP:0006532 | Recurrent pneumonia |
GWAS associations
1 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST004628_20 | Immature fraction of reticulocytes | 4.000000e-16 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0007986 | reticulocyte count |
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D002925 | Ciliary Motility Disorders | C08.200; C09.150; C16.131.077.245.500; C16.320.184.500 |
| D007619 | Kartagener Syndrome | C08.127.384.500; C08.200.531; C08.695.501; C09.150.531; C14.240.400.280.500; C14.280.400.280.500; C16.131.077.245.500.531; C16.131.240.400.280.500; C16.131.740.501; C16.131.810.250.500; C16.320.184.500.531; C16.320.480 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
25 total (human), top 25 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| Tunicamycin | increases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| sodium arsenate | decreases expression, increases abundance | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| ferrous chloride | decreases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment | 1 |
| abrine | increases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| jinfukang | increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Glyphosate | decreases expression | 1 |
| Air Pollutants | increases abundance, increases expression | 1 |
| Arsenic | decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | decreases methylation | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Phenylmercuric Acetate | affects cotreatment, decreases expression | 1 |
| Tobacco Smoke Pollution | decreases expression | 1 |
| Valproic Acid | increases methylation | 1 |
| 2,4-Dichlorophenoxyacetic Acid | decreases expression | 1 |
| Okadaic Acid | increases expression | 1 |
| Copper Sulfate | increases expression | 1 |
| Acrylamide | increases expression | 1 |
Clinical trials (associated diseases)
71 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT02871778 | PHASE2 | COMPLETED | Clearing Lungs With ENaC Inhibition in Primary Ciliary Dyskinesia |
| NCT07318974 | PHASE2 | ACTIVE_NOT_RECRUITING | Melatonin Therapy for Improving ICSI Outcomes in Women With Diminished Ovarian Reserve |
| NCT05737485 | PHASE1 | COMPLETED | Study Evaluating the Safety and Tolerability of RCT1100 in Healthy and PCD Subjects |
| NCT06600425 | PHASE1 | COMPLETED | A Study to Assess the Safety, Tolerability, Ciliary Rescue, and Pharmacodynamics of RCT1100 in Adults With PCD |
| NCT06633757 | PHASE1 | COMPLETED | Study of Inhaled RCT1100 in Adults With PCD Caused by Pathogenic Mutations in the DNAI1 Gene to Measure Mucociliary Clearance |
| NCT04901715 | EARLY_PHASE1 | COMPLETED | Functional Studies of Novel Genes Mutated in Primary Ciliary Dyskinesia II: Genotype to Phenotype |
| NCT00005650 | Not specified | COMPLETED | Genetic Study of Patients With Primary Ciliary Dyskinesia |
| NCT00323167 | Not specified | COMPLETED | Rare Genetic Disorders of the Breathing Airways |
| NCT00368446 | Not specified | COMPLETED | Genetic Disorders of Mucociliary Clearance in Nontuberculous Mycobacterial Lung Disease |
| NCT00450918 | Not specified | COMPLETED | Evaluating Progression of and Diagnostic Tools for Primary Ciliary Dyskinesia in Children and Adolescents |
| NCT00608556 | Not specified | COMPLETED | Dyskinesia, Heterotaxy and Congenital Heart Disease |
| NCT00686309 | Not specified | UNKNOWN | Comparison of On-line and Off-line Measurements of Exhaled Nitric Oxide (NO) |
| NCT00722878 | Not specified | COMPLETED | Long-term Lung Function and Disease Progression in Children With Early Onset Primary Ciliary Dyskinesia Lung Disease |
| NCT00739817 | Not specified | UNKNOWN | Screening for Primary Ciliary Dyskinesia Using Nasal Nitric Oxide |
| NCT00783887 | Not specified | COMPLETED | Diagnosis of Primary Ciliary Dyskinesia |
| NCT00807482 | Not specified | RECRUITING | Pathogenesis of Primary Ciliary Dyskinesia (PCD) Lung Disease |
| NCT01070914 | Not specified | UNKNOWN | Early Detection and Characterization of Primary Ciliary Dyskinesia |
| NCT01155115 | Not specified | COMPLETED | Inflammatory and Microbiologic Markers in Sputum: Comparing Cystic Fibrosis With Primary Ciliary Dyskinesia |
| NCT01246258 | Not specified | COMPLETED | Otolith Function in Patients With Primary Ciliary Dyskinesia |
| NCT01929356 | Not specified | RECRUITING | Chest Physiotherapy and Lung Function in Primary Ciliary Dyskinesia |
| NCT02389049 | Not specified | COMPLETED | Genetics of Primary Ciliary Dyskinesia |
| NCT02419365 | Not specified | RECRUITING | International Primary Ciliary Dyskinesia (PCD) Registry |
| NCT02699177 | Not specified | UNKNOWN | In Vivo Measurements of Nasal Ciliary Beat Frequency by Using Interferometry |
| NCT02704455 | Not specified | NOT_YET_RECRUITING | Registry Study on Primary Ciliary Dyskinesia in Chinese Children |
| NCT03271840 | Not specified | COMPLETED | Registry for Primary Ciliary Dyskinesia |
| NCT03279965 | Not specified | UNKNOWN | MRI in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03320382 | Not specified | UNKNOWN | Multiple Breath Washout, a Clinimetric Dataset |
| NCT03370029 | Not specified | COMPLETED | Respiratory Muscle Strength, Exercise Capacity and Physical Activity Levels in Children Primary Ciliary Dyskinesia |
| NCT03494894 | Not specified | COMPLETED | Bacteriological Link Between Upper and Lower Airways in Cystic Fibrosis and Primary Ciliary Dyskinesia |
| NCT03517865 | Not specified | ACTIVE_NOT_RECRUITING | International Primary Ciliary Dyskinesia Cohort |
| NCT03606200 | Not specified | RECRUITING | Swiss Primary Ciliary Dyskinesia Registry |
| NCT03704207 | Not specified | RECRUITING | Utility of PCD Diagnostics to Improve Clinical Care |
| NCT03704896 | Not specified | UNKNOWN | PRospective Observational Multicentre Study on VAriability of Lung Function in Stable PCD Patients |
| NCT03801395 | Not specified | COMPLETED | PCD New Gene Discovery |
| NCT03809091 | Not specified | UNKNOWN | WGS of Korean Idiopathic Bronchiectasis |
| NCT03832491 | Not specified | COMPLETED | Effect of Game Based Approach on Oxygenation, Functional Capacity and Quality of Life in Primary Ciliary Dyskinesia |
| NCT04161313 | Not specified | COMPLETED | Respiratory Function, Exercise Capacity and Peripheral Muscle Strength Among Patients With CF, PCD and Healthy Children |
| NCT04476433 | Not specified | COMPLETED | Intervention in Chronic Pediatric Patients and Their Families. |
| NCT04489472 | Not specified | UNKNOWN | The Effect of a Dietary Supplement Rich in Nitric Oxide in Patients Diagnosed With Primary Ciliary Dyskinesia. |
| NCT04602481 | Not specified | RECRUITING | Living With Primary Ciliary Dyskinesia (Living With PCD) |
Related Atlas pages
- Associated diseases: primary ciliary dyskinesia 35, primary ciliary dyskinesia
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): primary ciliary dyskinesia, primary ciliary dyskinesia 35