OGG1
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Also known as HMMHHOGG1OGH1MUTM
Summary
OGG1 (8-oxoguanine DNA glycosylase, HGNC:8125) is a protein-coding gene on chromosome 3p25.3, encoding N-glycosylase/DNA lyase (O15527). DNA repair enzyme that incises DNA at 8-oxoG residues.
This gene encodes the enzyme responsible for the excision of 8-oxoguanine, a mutagenic base byproduct which occurs as a result of exposure to reactive oxygen. The action of this enzyme includes lyase activity for chain cleavage. Alternative splicing of the C-terminal region of this gene classifies splice variants into two major groups, type 1 and type 2, depending on the last exon of the sequence. Type 1 alternative splice variants end with exon 7 and type 2 end with exon 8. All variants share the N-terminal region in common, which contains a mitochondrial targeting signal that is essential for mitochondrial localization. Many alternative splice variants for this gene have been described, but the full-length nature for every variant has not been determined.
Source: NCBI Gene 4968 — RefSeq curated summary.
At a glance
- Gene–disease (curated): nonpapillary renal cell carcinoma (Limited, GenCC)
- Clinical variants (ClinVar): 108 total
- Phenotypes (HPO): 2
- Druggable target: yes
- MANE Select transcript:
NM_002542
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8125 |
| Approved symbol | OGG1 |
| Name | 8-oxoguanine DNA glycosylase |
| Location | 3p25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HMMH, HOGG1, OGH1, MUTM |
| Ensembl gene | ENSG00000114026 |
| Ensembl biotype | protein_coding |
| OMIM | 601982 |
| Entrez | 4968 |
Gene structure
Transcript identifiers
Ensembl transcripts: 18 — 12 protein_coding, 2 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay, 2 retained_intron
ENST00000302003, ENST00000302008, ENST00000302036, ENST00000339511, ENST00000344629, ENST00000352937, ENST00000383825, ENST00000383826, ENST00000416333, ENST00000425665, ENST00000426518, ENST00000429146, ENST00000432857, ENST00000436092, ENST00000441094, ENST00000449570, ENST00000602976, ENST00000707074
RefSeq mRNA: 13 — MANE Select: NM_002542
NM_001354648, NM_001354649, NM_001354650, NM_001354651, NM_001354652, NM_002542, NM_016819, NM_016820, NM_016821, NM_016826, NM_016827, NM_016828, NM_016829
CCDS: CCDS2576, CCDS2577, CCDS2578, CCDS2579, CCDS2580, CCDS2581, CCDS43046, CCDS46742
Canonical transcript exons
ENST00000344629 — 7 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001165146 | 9754704 | 9754885 |
| ENSE00001644854 | 9751770 | 9751949 |
| ENSE00001651617 | 9757061 | 9757407 |
| ENSE00001669842 | 9750945 | 9751192 |
| ENSE00001764469 | 9756767 | 9756816 |
| ENSE00003477523 | 9756471 | 9756621 |
| ENSE00003913150 | 9749952 | 9750423 |
Expression profiles
Bgee: expression breadth ubiquitous, 288 present calls, max score 92.39.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 19.0141 / max 136.0681, expressed in 1806 samples.
FANTOM5 promoters (6 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 35227 | 9.8653 | 1735 |
| 35224 | 7.4665 | 1730 |
| 35225 | 0.8107 | 556 |
| 35228 | 0.6124 | 357 |
| 35229 | 0.1788 | 62 |
| 35226 | 0.0804 | 23 |
Top tissues by expression
297 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cortical plate | UBERON:0005343 | 92.39 | gold quality |
| ganglionic eminence | UBERON:0004023 | 91.96 | gold quality |
| ventricular zone | UBERON:0003053 | 91.53 | gold quality |
| oocyte | CL:0000023 | 91.08 | gold quality |
| right ovary | UBERON:0002118 | 90.21 | gold quality |
| metanephros cortex | UBERON:0010533 | 90.00 | gold quality |
| left ovary | UBERON:0002119 | 89.84 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 89.49 | gold quality |
| body of uterus | UBERON:0009853 | 89.35 | gold quality |
| granulocyte | CL:0000094 | 89.05 | gold quality |
| parotid gland | UBERON:0001831 | 89.04 | gold quality |
| left uterine tube | UBERON:0001303 | 88.90 | gold quality |
| right adrenal gland | UBERON:0001233 | 88.06 | gold quality |
| lymph node | UBERON:0000029 | 88.05 | gold quality |
| endocervix | UBERON:0000458 | 87.98 | gold quality |
| right lobe of liver | UBERON:0001114 | 87.94 | gold quality |
| right hemisphere of cerebellum | UBERON:0014890 | 87.74 | gold quality |
| duodenum | UBERON:0002114 | 87.71 | gold quality |
| cortex of kidney | UBERON:0001225 | 87.57 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 87.52 | gold quality |
| kidney | UBERON:0002113 | 87.50 | gold quality |
| ovary | UBERON:0000992 | 87.46 | gold quality |
| nephron tubule | UBERON:0001231 | 87.42 | gold quality |
| putamen | UBERON:0001874 | 87.33 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 87.16 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 87.15 | gold quality |
| small intestine | UBERON:0002108 | 87.10 | gold quality |
| cerebellar cortex | UBERON:0002129 | 87.10 | gold quality |
| cingulate cortex | UBERON:0003027 | 87.09 | gold quality |
| nerve | UBERON:0001021 | 87.07 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 377.46 |
| E-ANND-3 | yes | 4.76 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): APEX1, DNMT1, NFE2L2, NFYA, PARP1, PGR, PROX1, SPI1, TFAP4, TP53, TP63
miRNA regulators (miRDB)
25 targeting OGG1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-8075 | 99.97 | 67.20 | 962 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-609 | 99.82 | 64.26 | 505 |
| HSA-MIR-3680-3P | 99.75 | 72.51 | 3095 |
| HSA-MIR-3158-5P | 99.65 | 67.51 | 1763 |
| HSA-MIR-182-3P | 99.57 | 67.57 | 825 |
| HSA-MIR-1252-3P | 99.55 | 67.71 | 2862 |
| HSA-MIR-548AV-3P | 99.43 | 68.50 | 1721 |
| HSA-MIR-103A-1-5P | 99.39 | 67.78 | 1545 |
| HSA-MIR-103A-2-5P | 99.39 | 67.72 | 1577 |
| HSA-MIR-544B | 99.18 | 67.41 | 1632 |
| HSA-MIR-3688-5P | 99.12 | 69.67 | 1091 |
| HSA-MIR-361-5P | 98.95 | 70.16 | 1340 |
| HSA-MIR-374B-3P | 98.63 | 68.24 | 1360 |
| HSA-MIR-3187-3P | 97.38 | 65.80 | 904 |
| HSA-MIR-509-3-5P | 97.21 | 67.74 | 1517 |
| HSA-MIR-509-5P | 97.21 | 67.90 | 1512 |
| HSA-MIR-3622A-3P | 97.06 | 66.43 | 1000 |
| HSA-MIR-4418 | 97.04 | 67.16 | 1372 |
| HSA-MIR-3622B-3P | 96.82 | 66.36 | 988 |
| HSA-MIR-1266-3P | 96.23 | 66.36 | 778 |
| HSA-MIR-4509 | 96.19 | 65.80 | 900 |
| HSA-MIR-217-3P | 95.67 | 68.42 | 1000 |
| HSA-MIR-5009-5P | 94.82 | 63.89 | 775 |
Literature-anchored findings (GeneRIF, showing 40)
- OGG1 plays an important role in cell survival from radiation-induced damage (PMID:11827746)
- Expression of 8-oxoguanine DNA glycosylase is reduced and associated with neurofibrillary tangles in Alzheimer’s disease brain. (PMID:11837743)
- crystal structure of native hOgg1 refined to 2.15 A resolution that reveals a number of highly significant conformational changes on association with DNA that are clearly required for substrate recognition and specificity (PMID:11902834)
- human OGG1 Cys/Cys genotype may confer a 2-fold increased risk of lung cancer (PMID:11927502)
- hOGG1 Ser(326)Cys polymorphism and modification by environmental factors of stomach cancer risk in Chinese (PMID:11992556)
- Human OGG1 undergoes serine phosphorylation and associates with the nuclear matrix and mitotic chromatin in vivo. (PMID:12034821)
- These results suggest that hOGG1 may play an important role in the repair of 8-OH-dG adducts in the aerodigestive tract and that the hOGG1 Ser326Cys polymorphism plays an important role in risk for smoking- and alcohol-related orolaryngeal cancer (PMID:12117782)
- may reduce oxygen mediated DNA damage in lung cells (PMID:12119232)
- the association of OGG1 Ser326Cys polymorphism was limited for the risk of lung adenocarcinoma (PMID:12164330)
- Inter-individual variation, seasonal variation and close correlation of OGG1 and ERCC1 mRNA levels in full blood (PMID:12189194)
- Data show that overexpression of 8-oxoguanine DNA glycosylase/apurinic lyase (OGG1) causes enhanced repair of and increased resistance to oxidative damage to mtDNA. (PMID:12244119)
- Aspartate-268 of OGG1 is a critical amino acid residue that plays a dual role, acting both as an N-terminal alpha-helix cap and as a critical residue for catalysis of both base excision and DNA strand cleavage by the enzyme. (PMID:12578369)
- we report the structure of a trapped catalytic intermediate in DNA repair by human 8-oxoguanine DNA glycosylase (PMID:12592398)
- Of the 18 cancer cell lines treated with oh(8)dG, 3 cell lines (H9, CEM-CM3, and Molt-4) were found to be committed to apoptosis, and all of these showed very low OGG1 activity and a marked increase in the concentration of oh(8)Gua in DNA. (PMID:12612057)
- study showed that 8-oxoguanine DNA glycosylase 1 is the only glycosylase that incises 8-oxoadenine, when base-paired with cytosine in mitochondria and nuclei, but a different enzyme incises 8-oxoadenine when base-paired with guanine in the nucleus (PMID:12644468)
- association of 8-oxoguanine glycosylase I polymorphism of Ser326Cys substitution with colon cancer risk and possible interaction with known environmental risk factors (PMID:12717837)
- hOGG1 expression change during differentiation of hematopoietic stem cells for adaptation to new environments (PMID:12754413)
- hOGG1 Ser326Cys polymorphism is unlikely to play a modifying role in individual susceptibility to breast cancer among Asian women. (PMID:12779082)
- OGG1 and MYH function as suppressors for G:C to T:A transversions by 8OHG but not by BPDE in human cells. (PMID:12807753)
- Significant age-dependent decrease in hOgg1 activity in lymphocytes. Significantly reduced activity was also shown in with Cysteine/Cysteine genotypes. The genders of the subjects were not shown to be associated. (PMID:12841596)
- hOGG1 protein turnover may be sensitive to intracellular redox changes (PMID:12899941)
- data presented support a model by which X-ray repair cross complementing protein 1 (XRCC1) will pass on the DNA intermediate from DNA glycosylase hOGG1 to the endonuclease APE1 (PMID:12933815)
- hOGG1 may have a role in the repair of 8-OH-dG adducts in prostate tissue and hOGG1 Ser326Cys polymorphism is associated with prostate cancer risk. (PMID:14634453)
- findings indicate that loss of hOGG1 expression may have a role in development or progression of clear cell renal cell carcinoma. (PMID:14663360)
- OGG1 is upregulated by NFYA following administration of DNA-alkylating agents (PMID:14688259)
- hOgg1 mutant proteins with a substitution of H270A or F319A are members of a new type of hOgg1 that is deficient in DNA glycosylase but proficient in AP lyase (PMID:14752045)
- hOGG1 polymorphism is associated with lung cancer risk and is linked to exposure to tobacco smoke (PMID:15077011)
- Finds no association between the hOGG1 (Ser326Cys) polymorphism and squamous cell carcinoma of the head and neck. (PMID:15184269)
- Because there is an increased incidence of lung and small intestine cancer in Myh(-/-)/Ogg1(-/-) mice, these findings support a causal role for unrepaired oxidized DNA bases in cancer development. (PMID:15231648)
- Single nucleotide polymorphism may play a role in the pathogenesis of lung cancer in this population, particularly among heavily exposed women. (PMID:15284179)
- OGG1 and Nei-like endonuclease (NEI1), DNA glycosylases which do not stably interact, stimulate 8-oxoguanine repair by a collaboration that is possible because of higher abasic (AP) site affinity and stronger AP lyase activity of NEI1 relative to OGG1. (PMID:15350146)
- OGG1 R154H may function as a low/moderate-penetrance modifier for colorectal cancer development (PMID:15449173)
- The mitochondrial beta-Ogg1 isoform lacks 8-oxoguanine DNA glycosylase activity. (PMID:15494448)
- hOGG1 Ser326Cys polymorphism is associated with gastric cancer (PMID:15596047)
- hOgg1 mainly operates as a monofunctional glycosylase under physiological concentrations of magnesium (PMID:15661661)
- human OGG1 is regulated by cadmium through suppression of Sp1 activity (PMID:15760895)
- Relocalization of hOGG1 to the nucleoli during the S-phase in cells expressing the hOGG1-Cys326 polymorphic variant. (PMID:15800211)
- X ray structure of human oxoG repair protein, 8-oxoguanine DNA glycosylase I (hOGG1), in the act of interrogating normal DNA (PMID:15800616)
- OGG1 targeted to mitochondria reduces the activation of caspase-9 (PMID:15811855)
- Higher expression levels of mitochondrial isoforms of OGG1 enzymes in the substantia nigra (SN) in cases of PD. Furthermore, Western blot analysis revealed high OGG1 levels in the SN of the patients with PD. (PMID:15841414)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | ogg1 | ENSDARG00000060002 |
| mus_musculus | Ogg1 | ENSMUSG00000030271 |
| rattus_norvegicus | Ogg1 | ENSRNOG00000052140 |
| drosophila_melanogaster | Ogg1 | FBGN0027864 |
Protein
Protein identifiers
N-glycosylase/DNA lyase — O15527 (reviewed: O15527)
All UniProt accessions (15): O15527, A0A9L9PXU1, E5KPM5, E5KPM6, E5KPM7, E5KPM8, E5KPM9, E5KPN0, E5KPN1, F8WCZ9, H7BXZ1, H7BZM3, H7C0A1, H7C1D7, H7C1V7
UniProt curated annotations — full annotation on UniProt →
Function. DNA repair enzyme that incises DNA at 8-oxoG residues. Excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine (FAPY) from damaged DNA. Has a beta-lyase activity that nicks DNA 3’ to the lesion.
Subcellular location. Nucleus. Nucleoplasm. Nucleus speckle. Nucleus matrix Nucleus Mitochondrion.
Tissue specificity. Ubiquitous.
Disease relevance. Renal cell carcinoma (RCC) [MIM:144700] Renal cell carcinoma is a heterogeneous group of sporadic or hereditary carcinoma derived from cells of the proximal renal tubular epithelium. It is subclassified into clear cell renal carcinoma (non-papillary carcinoma), papillary renal cell carcinoma, chromophobe renal cell carcinoma, collecting duct carcinoma with medullary carcinoma of the kidney, and unclassified renal cell carcinoma. Clear cell renal cell carcinoma is the most common subtype. The disease may be caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the type-1 OGG1 family.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| O15527-1 | 1A, Alpha | yes |
| O15527-2 | 1B | |
| O15527-3 | 1C | |
| O15527-4 | 2A, Beta | |
| O15527-5 | 2B | |
| O15527-6 | 2C | |
| O15527-7 | 2D | |
| O15527-8 | 2E |
RefSeq proteins (13): NP_001341577, NP_001341578, NP_001341579, NP_001341580, NP_001341581, NP_002533, NP_058212, NP_058213, NP_058214, NP_058434, NP_058436, NP_058437, NP_058438 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003265 | HhH-GPD_domain | Domain |
| IPR004577 | Ogg1 | Family |
| IPR011257 | DNA_glycosylase | Homologous_superfamily |
| IPR012904 | OGG_N | Domain |
| IPR023170 | HhH_base_excis_C | Homologous_superfamily |
| IPR052054 | Oxidative_DNA_repair_enzyme | Family |
Pfam: PF00730, PF07934
Enzyme classification (BRENDA):
- EC 3.2.2.23 — DNA-formamidopyrimidine glycosylase (BRENDA: 13 organisms, 186 substrates, 18 inhibitors, 108 Km, 87 kcat entries)
- EC 4.2.99.18 — DNA-(apurinic or apyrimidinic site) lyase (BRENDA: 46 organisms, 543 substrates, 374 inhibitors, 166 Km, 138 kcat entries)
Substrate kinetics (BRENDA)
110 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| 5’-CTCTCCCTTC-5,6-DIHYDROURACIL-CTCCTTTCCTCT-3' | — | 13 |
| 13MER OLIGONUCLEOTIDE DUPLEX CONTAINING 8-OXOGUA | — | 10 |
| 8-OXO-7,8-DIHYDROGUANINE:CYT OLIGODEOXYNUCLEOTID | — | 9 |
| DNA CONTAINING AN ABASIC SITE | 100–413 | 9 |
| 5’-GACAAGCGCAG-(5R,6S)-2’-DEOXY-5,6-DIHYDROXYURI | — | 8 |
| DNA CONTAINING 8-HYDROXYGUANINE RESIDUES | — | 7 |
| DNA CONTAINING 5,6-DIHYDROURACIL | 0.0006–0.0096 | 6 |
| DNA CONTAINING 8-OXO-GUANINE RESIDUES | 0.001–0.44 | 6 |
| DNA CONTAINING 5-OH-C/A | — | 6 |
| 5’-GACAAGCGCAG-(5S,6R)-2’-DEOXY-5,6-DIHYDROXYURI | — | 5 |
| DNA CONTAINING 5-OH-C/G | — | 5 |
| OLIGOMER WITH G/U PAIR | 0.0001–0.0013 | 5 |
| 23MER OLIGONUCLEOTIDE DUPLEX CONTAINING 8-OXOGUA | — | 4 |
| DNA | — | 4 |
| DNA CONTAINING 2,6-DIAMINO-4-HYDROXY-5-FORMAMIDO | 0.0018–0.0049 | 4 |
Catalyzed reactions (Rhea), 1 shown:
- 2’-deoxyribonucleotide-(2’-deoxyribose 5’-phosphate)-2’-deoxyribonucleotide-DNA = a 3’-end 2’-deoxyribonucleotide-(2,3-dehydro-2,3-deoxyribose 5’-phosphate)-DNA + a 5’-end 5’-phospho-2’-deoxyribonucleoside-DNA + H(+) (RHEA:66592)
UniProt features (72 total): helix 17, sequence variant 11, strand 11, binding site 9, splice variant 8, turn 5, mutagenesis site 3, sequence conflict 3, compositionally biased region 2, chain 1, region of interest 1, active site 1
Structure
Experimental structures (PDB)
47 structures, top 30 by resolution.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8XWC | X-RAY DIFFRACTION | 1.45 |
| 2XHI | X-RAY DIFFRACTION | 1.55 |
| 5AN4 | X-RAY DIFFRACTION | 1.6 |
| 8XWU | X-RAY DIFFRACTION | 1.68 |
| 8XXK | X-RAY DIFFRACTION | 1.7 |
| 8XXG | X-RAY DIFFRACTION | 1.82 |
| 9NZ8 | X-RAY DIFFRACTION | 1.85 |
| 1M3Q | X-RAY DIFFRACTION | 1.9 |
| 6RLW | X-RAY DIFFRACTION | 2 |
| 7AYY | X-RAY DIFFRACTION | 2 |
| 9NZ9 | X-RAY DIFFRACTION | 2 |
| 1LWY | X-RAY DIFFRACTION | 2.01 |
| 2NOH | X-RAY DIFFRACTION | 2.01 |
| 1M3H | X-RAY DIFFRACTION | 2.05 |
| 1EBM | X-RAY DIFFRACTION | 2.1 |
| 1LWW | X-RAY DIFFRACTION | 2.1 |
| 2NOB | X-RAY DIFFRACTION | 2.1 |
| 1KO9 | X-RAY DIFFRACTION | 2.15 |
| 1N39 | X-RAY DIFFRACTION | 2.2 |
| 1N3A | X-RAY DIFFRACTION | 2.2 |
| 2NOE | X-RAY DIFFRACTION | 2.2 |
| 1LWV | X-RAY DIFFRACTION | 2.3 |
| 3KTU | X-RAY DIFFRACTION | 2.3 |
| 1HU0 | X-RAY DIFFRACTION | 2.35 |
| 2NOF | X-RAY DIFFRACTION | 2.35 |
| 2NOI | X-RAY DIFFRACTION | 2.35 |
| 6W0R | X-RAY DIFFRACTION | 2.35 |
| 6W0M | X-RAY DIFFRACTION | 2.37 |
| 6W13 | X-RAY DIFFRACTION | 2.38 |
| 1YQR | X-RAY DIFFRACTION | 2.43 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-O15527-F1 | 92.49 | 0.87 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 249 (schiff-base intermediate with dna)
Ligand- & substrate-binding residues (9): 270; 287; 315; 319; 149; 154; 204; 266; 268
Mutagenesis-validated functional residues (3):
| Position | Phenotype |
|---|---|
| 249 | loss of activity. |
| 268 | no effect on activity. |
| 268 | decreases activity about 65-fold. |
Function
Pathways and Gene Ontology
Reactome pathways
9 pathways
| ID | Pathway |
|---|---|
| R-HSA-110328 | Recognition and association of DNA glycosylase with site containing an affected pyrimidine |
| R-HSA-110329 | Cleavage of the damaged pyrimidine |
| R-HSA-110330 | Recognition and association of DNA glycosylase with site containing an affected purine |
| R-HSA-110331 | Cleavage of the damaged purine |
| R-HSA-110357 | Displacement of DNA glycosylase by APEX1 |
| R-HSA-5649702 | APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway |
| R-HSA-9656255 | Defective OGG1 Substrate Binding |
| R-HSA-9656256 | Defective OGG1 Substrate Processing |
| R-HSA-9657050 | Defective OGG1 Localization |
MSigDB gene sets: 264 (showing top):
GOBP_REGULATION_OF_DOUBLE_STRAND_BREAK_REPAIR, RNGTGGGC_UNKNOWN, MODULE_52, GOMF_ENDONUCLEASE_ACTIVITY, GOMF_NUCLEASE_ACTIVITY, GOBP_NEGATIVE_REGULATION_OF_DNA_REPAIR, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GOBP_CARBOHYDRATE_DERIVATIVE_CATABOLIC_PROCESS, DACOSTA_UV_RESPONSE_VIA_ERCC3_UP, AACYNNNNTTCCS_UNKNOWN, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, MODULE_16, KAUFFMANN_DNA_REPAIR_GENES, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, CAGCTG_AP4_Q5
GO Biological Process (14): base-excision repair (GO:0006284), base-excision repair, AP site formation (GO:0006285), nucleotide-excision repair (GO:0006289), regulation of DNA-templated transcription (GO:0006355), DNA damage response (GO:0006974), response to oxidative stress (GO:0006979), response to radiation (GO:0009314), cellular response to reactive oxygen species (GO:0034614), positive regulation of gene expression via chromosomal CpG island demethylation (GO:0044029), depurination (GO:0045007), depyrimidination (GO:0045008), positive regulation of transcription by RNA polymerase II (GO:0045944), negative regulation of double-strand break repair via single-strand annealing (GO:1901291), DNA repair (GO:0006281)
GO Molecular Function (16): RNA polymerase II cis-regulatory region sequence-specific DNA binding (GO:0000978), DNA binding (GO:0003677), damaged DNA binding (GO:0003684), endonuclease activity (GO:0004519), microtubule binding (GO:0008017), oxidized purine nucleobase lesion DNA N-glycosylase activity (GO:0008534), enzyme binding (GO:0019899), oxidized purine DNA binding (GO:0032357), 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity (GO:0034039), class I DNA-(apurinic or apyrimidinic site) endonuclease activity (GO:0140078), catalytic activity (GO:0003824), protein binding (GO:0005515), hydrolase activity (GO:0016787), hydrolase activity, acting on glycosyl bonds (GO:0016798), lyase activity (GO:0016829), DNA N-glycosylase activity (GO:0019104)
GO Cellular Component (8): nucleus (GO:0005634), nucleoplasm (GO:0005654), mitochondrion (GO:0005739), mitochondrial matrix (GO:0005759), cytosol (GO:0005829), nuclear matrix (GO:0016363), nuclear speck (GO:0016607), protein-containing complex (GO:0032991)
Reactome top-level categories
Rollup of top-4 pathways:
| Category | Pathways |
|---|---|
| Defective Base Excision Repair Associated with OGG1 | 3 |
| Depyrimidination | 2 |
| Depurination | 2 |
| Resolution of Abasic Sites (AP sites) | 2 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 3 |
| DNA repair | 2 |
| DNA metabolic process | 2 |
| base-excision repair, AP site formation | 2 |
| DNA modification | 2 |
| catalytic activity | 2 |
| intracellular membrane-bounded organelle | 2 |
| nuclear lumen | 2 |
| cytoplasm | 2 |
| base-excision repair | 1 |
| DNA-templated transcription | 1 |
| regulation of gene expression | 1 |
| regulation of RNA biosynthetic process | 1 |
| cellular response to stress | 1 |
| response to stress | 1 |
| response to abiotic stimulus | 1 |
| response to reactive oxygen species | 1 |
| cellular response to oxidative stress | 1 |
| cellular response to oxygen-containing compound | 1 |
| transcription initiation-coupled chromatin remodeling | 1 |
| pyrimidine deoxyribonucleotide catabolic process | 1 |
| regulation of transcription by RNA polymerase II | 1 |
| transcription by RNA polymerase II | 1 |
| positive regulation of DNA-templated transcription | 1 |
| double-strand break repair via single-strand annealing | 1 |
| negative regulation of double-strand break repair | 1 |
| DNA damage response | 1 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1 |
| cis-regulatory region sequence-specific DNA binding | 1 |
| nucleic acid binding | 1 |
| DNA binding | 1 |
| nuclease activity | 1 |
| tubulin binding | 1 |
| oxidized base lesion DNA N-glycosylase activity | 1 |
| protein binding | 1 |
| oxidized DNA binding | 1 |
| oxidized purine nucleobase lesion DNA N-glycosylase activity | 1 |
| DNA-(apurinic or apyrimidinic site) endonuclease activity | 1 |
| carbon-oxygen lyase activity | 1 |
| molecular_function | 1 |
Protein interactions and networks
STRING
0 interactions, top by confidence (×1000):
IntAct
13 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| APLNR | METTL15 | psi-mi:“MI:0914”(association) | 0.530 |
| XPC | OGG1 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| Ogg1 | OGG1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| M | psi-mi:“MI:0914”(association) | 0.350 | |
| NHLRC3 | OGG1 | psi-mi:“MI:0914”(association) | 0.350 |
| CD80 | RIMOC1 | psi-mi:“MI:0914”(association) | 0.350 |
| PTH2R | SPTLC2 | psi-mi:“MI:0914”(association) | 0.350 |
| SLC2A12 | NBAS | psi-mi:“MI:0914”(association) | 0.350 |
| OGG1 | Hspd1 | psi-mi:“MI:0403”(colocalization) | 0.270 |
| OGG1 | SNRPF | psi-mi:“MI:0915”(physical association) | 0.000 |
| OGG1 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| OGG1 | CHGB | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (25): OGG1 (Affinity Capture-MS), SNRPF (Affinity Capture-MS), OGG1 (Affinity Capture-Western), CHD4 (Affinity Capture-Western), XRCC1 (Reconstituted Complex), XRCC1 (Two-hybrid), RAD1 (Affinity Capture-Western), RAD9A (Affinity Capture-Western), HUS1 (Affinity Capture-Western), OGG1 (Reconstituted Complex), OGG1 (Reconstituted Complex), OGG1 (Reconstituted Complex), CHGB (Two-hybrid), OGG1 (Affinity Capture-RNA), OGG1 (Biochemical Activity)
ESM2 similar proteins: A4FV98, A5D7B1, A5PK51, A6QLN9, A8MUP2, D3ZVU9, O15527, O35595, O75078, O95848, P57775, Q05B60, Q06643, Q14728, Q14CX5, Q1LZB9, Q27HK4, Q2T9T5, Q2TBS1, Q3UGX3, Q4R3I0, Q4V892, Q58CT4, Q5E9H2, Q5RCI5, Q5SUV1, Q5TM22, Q642A6, Q6IA17, Q6PCB0, Q6XQN6, Q862Z7, Q8N8L6, Q8R2R5, Q8R2Z5, Q8R366, Q8WUG5, Q95JH0, Q95JH2, Q969P0
Diamond homologs: O08760, O15527, O70249, P53397, Q9FNY7, Q9V3I8, O27397, F4JCQ3
SIGNOR signaling
6 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NFYA | “up-regulates quantity by expression” | OGG1 | “transcriptional regulation” |
| TP53 | “up-regulates quantity by expression” | OGG1 | “transcriptional regulation” |
| NEDD4L | “down-regulates quantity by destabilization” | OGG1 | ubiquitination |
| OGG1 | up-regulates | DNA_repair | |
| CUX2 | “up-regulates activity” | OGG1 | binding |
| OGG1 | up-regulates | Base-excision_repair |
Disease & clinical
Clinical variants and AI predictions
ClinVar
108 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 83 |
| Likely benign | 9 |
| Benign | 3 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
3634 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 3:9751760:T:A | acceptor_gain | 1.0000 |
| 3:9751769:GGT:G | acceptor_gain | 1.0000 |
| 3:9751817:A:AG | acceptor_gain | 1.0000 |
| 3:9751817:ATCT:A | acceptor_gain | 1.0000 |
| 3:9751818:T:G | acceptor_gain | 1.0000 |
| 3:9751829:A:AG | acceptor_gain | 1.0000 |
| 3:9751830:A:G | acceptor_gain | 1.0000 |
| 3:9751832:A:AG | acceptor_gain | 1.0000 |
| 3:9751833:A:G | acceptor_gain | 1.0000 |
| 3:9751945:GGCTG:G | donor_gain | 1.0000 |
| 3:9751946:GCTG:G | donor_gain | 1.0000 |
| 3:9751946:GCTGG:G | donor_gain | 1.0000 |
| 3:9751949:GGT:G | donor_loss | 1.0000 |
| 3:9751950:G:GG | donor_gain | 1.0000 |
| 3:9751951:T:G | donor_loss | 1.0000 |
| 3:9751954:G:GG | donor_gain | 1.0000 |
| 3:9754693:A:AG | acceptor_gain | 1.0000 |
| 3:9754694:C:G | acceptor_gain | 1.0000 |
| 3:9754702:A:AC | acceptor_loss | 1.0000 |
| 3:9754702:A:AG | acceptor_gain | 1.0000 |
| 3:9754702:AG:A | acceptor_gain | 1.0000 |
| 3:9754702:AGG:A | acceptor_gain | 1.0000 |
| 3:9754703:G:GG | acceptor_gain | 1.0000 |
| 3:9754703:GG:G | acceptor_gain | 1.0000 |
| 3:9754703:GGG:G | acceptor_gain | 1.0000 |
| 3:9754703:GGGCC:G | acceptor_gain | 1.0000 |
| 3:9754841:G:GT | donor_gain | 1.0000 |
| 3:9754883:AAGG:A | donor_loss | 1.0000 |
| 3:9754885:GGTGA:G | donor_loss | 1.0000 |
| 3:9754886:G:GG | donor_gain | 1.0000 |
AlphaMissense
2218 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 3:9750946:T:A | W47R | 0.995 |
| 3:9750946:T:C | W47R | 0.995 |
| 3:9751925:T:C | F181L | 0.993 |
| 3:9751927:C:A | F181L | 0.993 |
| 3:9751927:C:G | F181L | 0.993 |
| 3:9750419:T:C | F45L | 0.992 |
| 3:9750421:C:A | F45L | 0.992 |
| 3:9750421:C:G | F45L | 0.992 |
| 3:9750997:T:A | W64R | 0.991 |
| 3:9750997:T:C | W64R | 0.991 |
| 3:9750948:G:C | W47C | 0.990 |
| 3:9750948:G:T | W47C | 0.990 |
| 3:9754769:A:C | S211R | 0.990 |
| 3:9754771:T:A | S211R | 0.990 |
| 3:9754771:T:G | S211R | 0.990 |
| 3:9756805:T:A | W313R | 0.990 |
| 3:9756805:T:C | W313R | 0.990 |
| 3:9757067:T:C | F319L | 0.989 |
| 3:9757069:C:A | F319L | 0.989 |
| 3:9757069:C:G | F319L | 0.989 |
| 3:9751814:T:C | F144L | 0.988 |
| 3:9751816:T:A | F144L | 0.988 |
| 3:9751816:T:G | F144L | 0.988 |
| 3:9754885:G:C | K249N | 0.988 |
| 3:9754885:G:T | K249N | 0.988 |
| 3:9754748:C:A | R204S | 0.987 |
| 3:9751926:T:C | F181S | 0.985 |
| 3:9756488:C:G | C255W | 0.985 |
| 3:9751004:T:C | L66P | 0.984 |
| 3:9754773:C:A | A212D | 0.983 |
dbSNP variants (sampled 300 via entrez): RS1000011737 (3:9775214 G>A,C), RS1000111939 (3:9781199 G>A), RS1000142713 (3:9780889 A>G), RS1000255179 (3:9769578 C>T), RS1000349198 (3:9769287 C>A,T), RS1000523584 (3:9764563 C>T), RS1000716628 (3:9770583 G>A,C), RS1000819802 (3:9775363 T>C), RS1000976608 (3:9752051 C>G,T), RS1001226359 (3:9769638 T>G), RS1001233953 (3:9775854 G>T), RS1001240394 (3:9752352 A>T), RS1001263718 (3:9776202 C>G), RS1001436923 (3:9762597 T>G), RS1001442171 (3:9782206 C>G)
Disease associations
OMIM: gene MIM:601982 | disease phenotypes:
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| nonpapillary renal cell carcinoma | Limited | Autosomal dominant |
Mondo (2): clear cell renal carcinoma (MONDO:0005005), nonpapillary renal cell carcinoma (MONDO:0007763)
Orphanet (1): Clear cell renal carcinoma (Orphanet:319276)
HPO phenotypes
2 total (2 of 2 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0003745 | Sporadic |
| HP:0005584 | Renal cell carcinoma |
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL3396944 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1052133 | CAMK1, OGG1 | 0.00 | 0 | ||
| rs293795 | CAMK1, OGG1 | 0.00 | 0 |
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: enzyme — DNA glycosylases
Binding affinities (BindingDB)
1 measured of 19 human assays (21 total across all organisms); most potent 1 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| 4-[4-(2-cyclohexyloxyethoxy)-2-oxo-3H-benzimidazol-1-yl]-N-(3-methoxy-4-methylphenyl)cyclohexane-1-carboxamide | IC50 | 118 nM | US-11970474: Substituted benzodiazoles and use thereof in therapy |
ChEMBL bioactivities
35 potent at pChembl≥5 of 35 total, top 34 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.23 | IC50 | 59 | nM | CHEMBL5754134 |
| 6.66 | IC50 | 220 | nM | CHEMBL4441163 |
| 6.60 | IC50 | 250 | nM | CHEMBL6056196 |
| 6.57 | IC50 | 270 | nM | CHEMBL4470975 |
| 6.57 | IC50 | 270 | nM | CHEMBL5939244 |
| 6.54 | IC50 | 290 | nM | CHEMBL4568814 |
| 6.52 | IC50 | 300 | nM | CHEMBL4436904 |
| 6.48 | IC50 | 330 | nM | CHEMBL4437745 |
| 6.47 | IC50 | 340 | nM | CHEMBL4568814 |
| 6.46 | IC50 | 350 | nM | CHEMBL4441163 |
| 6.43 | IC50 | 370 | nM | CHEMBL4470975 |
| 6.41 | IC50 | 390 | nM | CHEMBL124433 |
| 6.38 | IC50 | 420 | nM | CHEMBL4437745 |
| 6.21 | IC50 | 610 | nM | CHEMBL4564367 |
| 6.20 | IC50 | 630 | nM | CHEMBL4564367 |
| 6.13 | IC50 | 740 | nM | CHEMBL4441163 |
| 6.11 | EC50 | 780 | nM | CHEMBL5429494 |
| 5.99 | IC50 | 1030 | nM | CHEMBL4441163 |
| 5.96 | IC50 | 1100 | nM | CHEMBL6001797 |
| 5.82 | IC50 | 1530 | nM | CHEMBL4466083 |
| 5.82 | IC50 | 1500 | nM | CHEMBL5815612 |
| 5.81 | IC50 | 1560 | nM | CHEMBL4437797 |
| 5.77 | IC50 | 1700 | nM | CHEMBL1514745 |
| 5.67 | IC50 | 2130 | nM | CHEMBL4593255 |
| 5.47 | IC50 | 3380 | nM | CHEMBL4584200 |
| 5.42 | IC50 | 3780 | nM | CHEMBL4579570 |
| 5.39 | EC50 | 4100 | nM | CHEMBL5402302 |
| 5.38 | IC50 | 4150 | nM | CHEMBL4568614 |
| 5.34 | IC50 | 4560 | nM | CHEMBL4445023 |
| 5.34 | EC50 | 4600 | nM | CHEMBL5411882 |
| 5.30 | EC50 | 5000 | nM | CHEMBL529145 |
| 5.29 | EC50 | 5100 | nM | CHEMBL5401642 |
| 5.14 | IC50 | 7170 | nM | CHEMBL3209772 |
| 5.00 | IC50 | 1e+04 | nM | CHEMBL4564367 |
PubChem BioAssay actives
25 with measured affinity, of 34 total; 20 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 3,4-dichloro-1-benzothiophene-2-carbohydrazide | 1801343: Gel-based Cleavage Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 0.2200 | uM |
| 3-chloro-N-[(Z)-(2-methylcyclohexylidene)amino]-1-benzothiophene-2-carboxamide | 1801343: Gel-based Cleavage Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 0.2700 | uM |
| N-(cyclohexylideneamino)-3-hydroxynaphthalene-2-carboxamide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 0.2900 | uM |
| 3-chloro-1-benzothiophene-2-carbohydrazide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 0.3000 | uM |
| 3-chloro-N-[(E)-(4-fluorophenyl)methylideneamino]-1-benzothiophene-2-carboxamide | 1801343: Gel-based Cleavage Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 0.3300 | uM |
| 4-bromobenzohydrazide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 0.3900 | uM |
| 4-bromo-N-(cyclohexylideneamino)benzamide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 0.6100 | uM |
| N-cyclohexyl-2-cyclopropylquinazolin-4-amine | 2022484: Activation of OGG1 (unknown origin) by fluorescence-based assay | ec50 | 0.7800 | uM |
| 2-(4-chloro-3,5-dimethylphenoxy)acetohydrazide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 1.5300 | uM |
| 2-naphthalen-1-yloxyacetohydrazide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 1.5600 | uM |
| 3-bromo-N-[(Z)-hexan-2-ylideneamino]benzamide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 2.1300 | uM |
| 2-(3-chlorophenoxy)propanehydrazide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 3.3800 | uM |
| 3-bromo-N-[(Z)-hex-5-en-2-ylideneamino]benzamide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 3.7800 | uM |
| (2S)-2-[(2-anilino-6-methylpyrimidin-4-yl)amino]-N-phenylpropanamide | 2022484: Activation of OGG1 (unknown origin) by fluorescence-based assay | ec50 | 4.1000 | uM |
| 1-(4-methoxy-2,5-dimethylphenyl)sulfonyl-4-methyl-2-phenylimidazole | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 4.1500 | uM |
| 2,4-dichloro-N-[(1-propylpiperidin-4-ylidene)amino]benzamide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 4.5600 | uM |
| 2-[4-(4-imidazol-1-ylphenoxy)-5-methylpyrimidin-2-yl]-3,4,6,7,8,8a-hexahydro-1H-pyrrolo[1,2-a]pyrazine | 2022484: Activation of OGG1 (unknown origin) by fluorescence-based assay | ec50 | 4.6000 | uM |
| 1-cyclohexyl-1-(2,4-dichlorophenyl)-2-imidazol-1-ylethanol | 2022484: Activation of OGG1 (unknown origin) by fluorescence-based assay | ec50 | 5.0000 | uM |
| 2-(4-fluorophenyl)-N,1,7-trimethylpyrrolo[2,3-d]pyridazin-4-amine | 2022484: Activation of OGG1 (unknown origin) by fluorescence-based assay | ec50 | 5.1000 | uM |
| N-[(E)-1-(1,3-benzodioxol-5-yl)ethylideneamino]-3-hydroxynaphthalene-2-carboxamide | 1801344: Fluorescence-based Assay from Article 10.1021/acschembio.5b00452: “Small Molecule Inhibitors of 8-Oxoguanine DNA Glycosylase-1 (OGG1).” | ic50 | 7.1700 | uM |
CTD chemical–gene interactions
123 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Arsenic | decreases reaction, affects cotreatment, decreases expression, increases abundance, affects expression (+1 more) | 7 |
| sodium arsenite | increases expression, decreases activity, affects cotreatment, decreases expression, increases abundance (+2 more) | 5 |
| Pesticides | increases response to substance, affects response to substance, affects cotreatment, decreases activity | 5 |
| Air Pollutants | increases methylation, affects response to substance, affects cotreatment, increases abundance, increases expression (+1 more) | 4 |
| Cadmium | affects activity, affects binding, decreases reaction, decreases expression, decreases activity (+1 more) | 3 |
| Hydrogen Peroxide | increases reaction, increases expression, increases response to substance | 3 |
| Ozone | increases abundance, affects expression, affects cotreatment, increases expression | 3 |
| Cadmium Chloride | affects cotreatment, increases expression, decreases expression, increases activity, increases methylation (+1 more) | 3 |
| 4-biphenylamine | decreases expression, decreases reaction | 2 |
| bisphenol A | decreases reaction, decreases expression, increases methylation | 2 |
| sodium bichromate | increases response to substance, decreases expression | 2 |
| chromium hexavalent ion | affects expression, decreases expression | 2 |
| entinostat | decreases expression, affects cotreatment | 2 |
| Decitabine | decreases reaction, increases expression, affects expression, affects reaction, decreases expression | 2 |
| Arsenic Trioxide | decreases expression, affects activity | 2 |
| Acetaminophen | increases expression | 2 |
| Glyphosate | affects activity, decreases expression, increases expression | 2 |
| Benzo(a)pyrene | increases methylation, decreases expression | 2 |
| Carmustine | decreases response to substance | 2 |
| Doxorubicin | increases expression, increases response to substance, decreases expression | 2 |
| Chlorpyrifos | increases expression, affects activity, affects expression, decreases expression | 2 |
| Estradiol | increases expression, increases response to substance, affects expression, affects reaction | 2 |
| Folic Acid | decreases expression, decreases reaction, increases expression | 2 |
| Thiotepa | decreases response to substance | 2 |
| Styrene | affects response to substance, increases expression | 2 |
| Vitamin K 3 | increases response to substance, increases expression | 2 |
| Particulate Matter | increases abundance, increases methylation, decreases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| bisphenol F | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
19 unique, capped per target: 18 binding, 1 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL3398692 | Binding | Inhibition of OGG1 (unknown origin) pre-incubated with compound for 10 mins followed by addition of 1,N6 ethenoadenine containing 32P-labeled duplex oligonucleotide substrates at 20 to 40 uM by gel-based excision activity assay | Naturally occurring polyphenol, morin hydrate, inhibits enzymatic activity of N-methylpurine DNA glycosylase, a DNA repair enzyme with various roles in human disease. — Bioorg Med Chem |
| CHEMBL5665450 | Functional | Inhibition of OGG1 by quantifying inhibition of OGG1-mediated cleavage and dissociation of quenched duplex DNA oligonucleotides, measured as fluorescence at 594 nm. To generate a functional strand incision and increase turn-over this assay | Enzyme Inhibitor Single Concentration assay results for EUbOPEN Chemogenomics Library |
Cellosaurus cell lines
6 cell lines: 6 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_D1XY | Abcam A-549 OGG1 KO | Cancer cell line | Male |
| CVCL_D2C7 | Abcam HCT 116 OGG1 KO | Cancer cell line | Male |
| CVCL_KT85 | HeLa SilenciX Ogg1 | Cancer cell line | Female |
| CVCL_TB61 | HAP1 OGG1 (-) 1 | Cancer cell line | Male |
| CVCL_TB62 | HAP1 OGG1 (-) 2 | Cancer cell line | Male |
| CVCL_TB63 | HAP1 OGG1 (-) 3 | Cancer cell line | Male |
Clinical trials (associated diseases)
499 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00414765 | PHASE4 | COMPLETED | Aldesleukin in Participants With Metastatic Renal Cell Carcinoma or Metastatic Melanoma |
| NCT00777504 | PHASE4 | UNKNOWN | Study to the Optimal Duration of Therapy With Oral Angiogenesis Inhibitors |
| NCT00930345 | PHASE4 | TERMINATED | Biological, Pathological and Imagery Markers in the First-line Treatment of Metastatic Clear-cell Renal Cell Carcinoma |
| NCT01206764 | PHASE4 | COMPLETED | A Trial of Everolimis in Patients With Advanced Renal Cell Carcinoma. |
| NCT01266837 | PHASE4 | COMPLETED | Open Label, Single Arm Trial to Characterize Patients With Metastatic RCC Treated With Everolimus After Failure of the First VEGF-targeted Therapy (MARC-2) |
| NCT02056587 | PHASE4 | COMPLETED | Everolimus in Patients With Metastatic Renal Cell Carcinoma Following Progression on Prior Bevacizumab Treatment |
| NCT02338570 | PHASE4 | TERMINATED | Outcome-related Factors in Patients With Metastatic Renal Cell Carcinoma Treated With Everolimus (ORCHIDEE) |
| NCT02596035 | PHASE4 | COMPLETED | An Investigational Immuno-therapy Safety Trial of Nivolumab in Patients With Advanced or Metastatic Renal Cell Carcinoma |
| NCT02982954 | PHASE4 | COMPLETED | A Study to Evaluate the Safety of Nivolumab and Ipilimumab in Subjects With Previously Untreated Advanced or Metastatic Renal Cell Cancer |
| NCT05949424 | PHASE4 | UNKNOWN | OPTI - DOSE: Optimal Dosing of Oral Anticancer Drugs in Older Adults |
| NCT07028125 | PHASE4 | RECRUITING | Digital Monitoring of Self-reported Symptoms by Patients Treated With Cabozantinib Plus Nivolumab for Advanced Clear-cell Renal Carcinoma |
| NCT07405086 | PHASE4 | RECRUITING | Morning Versus Afternoon Administration of Immunotherapy for the Treatment of Advanced or Metastatic Solid Tumors, The Knight SHIFT Study |
| NCT01521715 | PHASE4 | COMPLETED | First Line Pazopanib in Poor Risk Patients With Metastatic Renal Cell Carcinoma |
| NCT02570789 | PHASE4 | TERMINATED | Evaluation of Predictive Markers for Toxicity and Efficacy in Patients With mccRCC Treated by Anti-VEGF Therapy |
| NCT00033904 | PHASE3 | COMPLETED | Survival Study Of Oncophage® vs. Observation In Patients With Kidney Cancer |
| NCT00126178 | PHASE3 | TERMINATED | Clinical Trial Studying a Personalized Cancer Vaccine in Patients With Non-metastatic Kidney Cancer |
| NCT00291369 | PHASE3 | COMPLETED | Cytokines in Patients With Metastatic Renal Cell Carcinoma of Intermediate Prognosis |
| NCT00326898 | PHASE3 | COMPLETED | Sunitinib Malate or Sorafenib Tosylate in Treating Patients With Kidney Cancer That Was Removed By Surgery |
| NCT00410124 | PHASE3 | COMPLETED | RAD001 Plus Best Supportive Care (BSC) Versus BSC Plus Placebo in Patients With Metastatic Carcinoma of the Kidney Which Has Progressed After Treatment With Sorafenib and/or Sunitinib |
| NCT00474786 | PHASE3 | COMPLETED | Temsirolimus Versus Sorafenib As Second-Line Therapy In Patients With Advanced RCC Who Have Failed First-Line Sunitinib |
| NCT00478114 | PHASE3 | COMPLETED | Efficacy and Safety of Sorafenib in Advanced Renal Cell Carcinoma (RCC) |
| NCT00606632 | PHASE3 | COMPLETED | Pre-surgical Detection of Clear Cell Renal Cell Carcinoma (ccRCC) Using Radiolabeled G250-Antibody |
| NCT00606866 | PHASE3 | COMPLETED | MRI Study of BAY 43-9006 in Metastatic Renal Cell Carcinoma |
| NCT00631371 | PHASE3 | COMPLETED | Study Comparing Bevacizumab + Temsirolimus vs. Bevacizumab + Interferon-Alfa In Advanced Renal Cell Carcinoma Subjects |
| NCT00732914 | PHASE3 | COMPLETED | Sequential Study to Treat Renal Cell Carcinoma |
| NCT00869011 | PHASE3 | UNKNOWN | Exercise for Patients With Renal Cell Cancer Receiving Sunitinib |
| NCT00930033 | PHASE3 | COMPLETED | Clinical Trial to Assess the Importance of Nephrectomy |
| NCT01030783 | PHASE3 | COMPLETED | A Study to Compare Tivozanib (AV-951) to Sorafenib in Subjects With Advanced Renal Cell Carcinoma |
| NCT01076010 | PHASE3 | COMPLETED | An Extension Treatment Protocol for Subjects Who Have Participated in a Study of Tivozanib Versus Sorafenib in Kidney Carcinoma (Protocol AV-951-09-301). |
| NCT01198158 | PHASE3 | TERMINATED | Everolimus With or Without Bevacizumab in Treating Patients With Advanced Kidney Cancer That Progressed After First-Line Therapy |
| NCT01223027 | PHASE3 | COMPLETED | Study of Dovitinib Versus Sorafenib in Patients With Metastatic Renal Cell Carcinoma |
| NCT01224288 | PHASE3 | ACTIVE_NOT_RECRUITING | Dynamic Contrast Enhancement Computed Tomography for Evaluating Tumor Perfusion in Patients With Metastatic Renal Cell Carcinoma Receiving Targeted Therapies: Renal Cell Carcinoma (RCC) Scramble |
| NCT01235962 | PHASE3 | COMPLETED | A Study to Evaluate Pazopanib as an Adjuvant Treatment for Localized Renal Cell Carcinoma (RCC) |
| NCT01265810 | PHASE3 | COMPLETED | Caphosol in Oral Mucositis Due to Targeted Therapy |
| NCT01265901 | PHASE3 | COMPLETED | IMA901 in Patients Receiving Sunitinib for Advanced/Metastatic Renal Cell Carcinoma |
| NCT01481870 | PHASE3 | UNKNOWN | Comparison of Sequential Therapies With Sunitinib and Sorafenib in Advanced Renal Cell Carcinoma |
| NCT01575548 | PHASE3 | ACTIVE_NOT_RECRUITING | Pazopanib Hydrochloride in Treating Patients With Metastatic Kidney Cancer Who Have No Evidence of Disease After Surgery |
| NCT01582672 | PHASE3 | TERMINATED | Phase 3 Trial of Autologous Dendritic Cell Immunotherapy Plus Standard Treatment of Advanced Renal Cell Carcinoma |
| NCT01613846 | PHASE3 | COMPLETED | Phase III Sequential Open-label Study to Evaluate the Efficacy and Safety of Sorafenib Followed by Pazopanib Versus Pazopanib Followed by Sorafenib in the Treatment of Advanced / Metastatic Renal Cell Carcinoma (SWITCH-II) |
| NCT01762592 | PHASE3 | WITHDRAWN | REDECT 2: REnal Masses: Pivotal Trial to DEteCT Clear Cell Renal Cell Carcinoma With PET/CT |
Related Atlas pages
- Associated diseases: nonpapillary renal cell carcinoma
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): clear cell renal carcinoma, nonpapillary renal cell carcinoma