OIT3
gene geneOn this page
Also known as LZPFLJ39116
Summary
OIT3 (oncoprotein induced transcript 3, HGNC:29953) is a protein-coding gene on chromosome 10q22.1, encoding Oncoprotein-induced transcript 3 protein (Q8WWZ8). May be involved in hepatocellular function and development.
This gene was identified due to its downregulation in hepatocarcinomas. The encoded protein may be involved in liver development and function.
Source: NCBI Gene 170392 — RefSeq curated summary.
At a glance
- GWAS associations: 6
- Clinical variants (ClinVar): 103 total
- MANE Select transcript:
NM_152635
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:29953 |
| Approved symbol | OIT3 |
| Name | oncoprotein induced transcript 3 |
| Location | 10q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | LZP, FLJ39116 |
| Ensembl gene | ENSG00000138315 |
| Ensembl biotype | protein_coding |
| OMIM | 609330 |
| Entrez | 170392 |
Gene structure
Transcript identifiers
Ensembl transcripts: 8 — 8 protein_coding
ENST00000334011, ENST00000622652, ENST00000858589, ENST00000858590, ENST00000858591, ENST00000858592, ENST00000858593, ENST00000858594
RefSeq mRNA: 1 — MANE Select: NM_152635
NM_152635
CCDS: CCDS7318
Canonical transcript exons
ENST00000334011 — 9 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000834450 | 72911717 | 72911839 |
| ENSE00001023972 | 72913308 | 72913468 |
| ENSE00001170094 | 72930538 | 72930637 |
| ENSE00001170104 | 72924229 | 72924644 |
| ENSE00001170128 | 72906596 | 72906718 |
| ENSE00001170137 | 72900377 | 72900484 |
| ENSE00001339835 | 72898664 | 72899038 |
| ENSE00001434413 | 72893739 | 72893859 |
| ENSE00001459385 | 72932354 | 72933036 |
Expression profiles
Bgee: expression breadth broad, 78 present calls, max score 91.00.
FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1148 / max 31.9842, expressed in 25 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 105514 | 0.0438 | 9 |
| 105512 | 0.0419 | 19 |
| 105513 | 0.0291 | 9 |
Top tissues by expression
223 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| liver | UBERON:0002107 | 91.00 | gold quality |
| right lobe of liver | UBERON:0001114 | 87.71 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 83.82 | gold quality |
| spleen | UBERON:0002106 | 71.09 | gold quality |
| pancreatic ductal cell | CL:0002079 | 68.69 | silver quality |
| right atrium auricular region | UBERON:0006631 | 66.52 | gold quality |
| cardiac atrium | UBERON:0002081 | 65.61 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 62.90 | gold quality |
| adrenal tissue | UBERON:0018303 | 62.47 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 61.22 | gold quality |
| small intestine | UBERON:0002108 | 60.00 | gold quality |
| adult mammalian kidney | UBERON:0000082 | 58.86 | gold quality |
| duodenum | UBERON:0002114 | 56.39 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 55.70 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 54.92 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 54.23 | gold quality |
| kidney epithelium | UBERON:0004819 | 53.93 | gold quality |
| upper arm skin | UBERON:0004263 | 53.52 | gold quality |
| ileal mucosa | UBERON:0000331 | 53.46 | silver quality |
| gall bladder | UBERON:0002110 | 53.10 | gold quality |
| kidney | UBERON:0002113 | 52.80 | gold quality |
| tibialis anterior | UBERON:0001385 | 50.95 | silver quality |
| myocardium | UBERON:0002349 | 50.49 | gold quality |
| vermiform appendix | UBERON:0001154 | 50.20 | gold quality |
| deltoid | UBERON:0001476 | 49.53 | gold quality |
| rectum | UBERON:0001052 | 49.01 | gold quality |
| cerebellar hemisphere | UBERON:0002245 | 48.91 | gold quality |
| cerebellar cortex | UBERON:0002129 | 48.90 | gold quality |
| cerebellar vermis | UBERON:0004720 | 48.63 | gold quality |
| cerebellum | UBERON:0002037 | 48.42 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-130473 | yes | 2587.28 |
| E-MTAB-7407 | yes | 1867.06 |
| E-MTAB-10553 | yes | 1468.07 |
| E-ANND-5 | yes | 645.57 |
| E-HCAD-9 | yes | 20.44 |
| E-ANND-3 | no | 3.72 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): PBX1, TCF3
miRNA regulators (miRDB)
31 targeting OIT3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-767-5P | 99.95 | 70.85 | 993 |
| HSA-MIR-128-3P | 99.95 | 71.17 | 2484 |
| HSA-MIR-216A-3P | 99.95 | 71.19 | 2505 |
| HSA-MIR-4302 | 99.89 | 67.94 | 1187 |
| HSA-MIR-4496 | 99.88 | 68.89 | 2236 |
| HSA-MIR-3681-3P | 99.88 | 70.46 | 2254 |
| HSA-MIR-30A-3P | 99.87 | 69.74 | 2928 |
| HSA-MIR-30D-3P | 99.87 | 69.92 | 2917 |
| HSA-MIR-30E-3P | 99.87 | 69.68 | 2942 |
| HSA-MIR-4677-5P | 99.70 | 70.09 | 1940 |
| HSA-MIR-12124 | 99.68 | 69.17 | 2700 |
| HSA-MIR-892C-3P | 99.65 | 69.38 | 1745 |
| HSA-MIR-452-5P | 99.65 | 69.63 | 1762 |
| HSA-MIR-4676-3P | 99.65 | 69.31 | 1733 |
| HSA-MIR-20A-3P | 99.44 | 69.10 | 1575 |
| HSA-MIR-513A-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-513C-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-32-3P | 99.36 | 68.20 | 2517 |
| HSA-MIR-2116-5P | 99.32 | 69.34 | 1273 |
| HSA-MIR-4291 | 99.20 | 68.88 | 2969 |
| HSA-MIR-8065 | 99.19 | 70.38 | 1289 |
| HSA-MIR-3606-3P | 99.11 | 69.84 | 3254 |
| HSA-MIR-29A-5P | 99.08 | 68.59 | 1813 |
| HSA-MIR-3938 | 98.72 | 66.07 | 834 |
| HSA-MIR-6883-3P | 97.97 | 67.35 | 643 |
| HSA-MIR-4678 | 97.59 | 68.31 | 902 |
| HSA-MIR-6834-5P | 96.25 | 64.88 | 823 |
| HSA-MIR-759 | 96.16 | 66.77 | 873 |
Literature-anchored findings (GeneRIF, showing 7)
- Liver-specific ZP domain-containing protein (LZP) is a liver-specific protein involved possibly in hepatocellular function and development. (liver-specific ZP domain-containing protein) (PMID:12939600)
- D8C, a novel domain present in LZP, mutates in familial juvenile hyperuricemia. (PMID:15589826)
- The finding that LZP might act as a new partner of THP would provide novel insights into renal functions related to THP and LZP, such as the urothelial permeability barrier and the host defense against the adhesion of pathogens. (PMID:18830570)
- Loss of heterozygosity of OIT3 gene on chromosome 10q is associated with pancreatic cancer. (PMID:25824785)
- rs554643826 (T439S) may have contributed to inheritance of gout in a Chinese family (PMID:32569156)
- OIT3 mediates macrophage polarization and facilitates hepatocellular carcinoma progression. (PMID:35353239)
- Increased OIT3 in macrophages promotes PD-L1 expression and hepatocellular carcinogenesis via NF-kappaB signaling. (PMID:37201744)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | oit3 | ENSDARG00000087227 |
| mus_musculus | Oit3 | ENSMUSG00000009654 |
| rattus_norvegicus | Oit3 | ENSRNOG00000046365 |
Paralogs (5): TECTB (ENSG00000119913), UMOD (ENSG00000169344), GP2 (ENSG00000169347), ZPLD1 (ENSG00000170044), UMODL1 (ENSG00000177398)
Protein
Protein identifiers
Oncoprotein-induced transcript 3 protein — Q8WWZ8 (reviewed: Q8WWZ8)
Alternative names: Liver-specific zona pellucida domain-containing protein
All UniProt accessions (1): Q8WWZ8
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in hepatocellular function and development.
Subcellular location. Nucleus envelope.
Tissue specificity. Liver-specific. Expressed only in the hepatocytes. Down-regulated in hepatocellular carcinoma (HCC) and HCC cell lines.
Isoforms (2)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8WWZ8-1 | 1 | yes |
| Q8WWZ8-2 | 2 |
RefSeq proteins (1): NP_689848* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000742 | EGF | Domain |
| IPR001507 | ZP_dom | Domain |
| IPR001881 | EGF-like_Ca-bd_dom | Domain |
| IPR018097 | EGF_Ca-bd_CS | Conserved_site |
| IPR042235 | ZP-C_dom | Homologous_superfamily |
| IPR048290 | ZP_chr | Domain |
| IPR055355 | ZP-C | Domain |
| IPR057774 | D8C_UMOD/GP2/OIT3-like | Domain |
Pfam: PF00100, PF14670, PF23283
UniProt features (21 total): disulfide bond 8, glycosylation site 4, domain 3, splice variant 2, signal peptide 1, chain 1, sequence variant 1, region of interest 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8WWZ8-F1 | 79.35 | 0.33 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (8): 25–124, 51–139, 74–112, 80–144, 105–113, 186–197, 193–206, 208–221
Glycosylation sites (4): 89, 116, 291, 299
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 62 (showing top):
GOCC_CELL_SURFACE, GOBP_RENAL_SYSTEM_PROCESS, GOCC_NUCLEAR_ENVELOPE, STAT5A_01, BOCHKIS_FOXA2_TARGETS, CHEN_METABOLIC_SYNDROM_NETWORK, GOCC_ORGANELLE_ENVELOPE, WHITFIELD_CELL_CYCLE_G2_M, GUILLAUMOND_KLF10_TARGETS_DN, RATTENBACHER_BOUND_BY_CELF1, NABA_ECM_GLYCOPROTEINS, ZNF7_TARGET_GENES, MIR452_5P, MIR892C_3P, MIR4676_3P
GO Biological Process (1): renal system process (GO:0003014)
GO Molecular Function (2): calcium ion binding (GO:0005509), protein binding (GO:0005515)
GO Cellular Component (4): obsolete extracellular space (GO:0005615), nuclear envelope (GO:0005635), cell surface (GO:0009986), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| system process | 1 |
| metal ion binding | 1 |
| binding | 1 |
| nucleus | 1 |
| endomembrane system | 1 |
| organelle envelope | 1 |
| cellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
730 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| OIT3 | PLAC8L1 | A1L4L8 | 422 |
| OIT3 | STAB2 | Q8WWQ8 | 419 |
| OIT3 | FCN2 | Q15485 | 371 |
| OIT3 | CLEC4G | Q6UXB4 | 354 |
| OIT3 | TMCO2 | Q7Z6W1 | 349 |
| OIT3 | SLC71A2 | Q5SR56 | 335 |
| OIT3 | CCDC174 | Q6PII3 | 328 |
| OIT3 | LYVE1 | Q9Y5Y7 | 325 |
| OIT3 | FCN3 | O75636 | 314 |
| OIT3 | ANGPTL6 | Q8NI99 | 301 |
| OIT3 | MMRN2 | Q9H8L6 | 297 |
| OIT3 | MAP6D1 | Q9H9H5 | 292 |
| OIT3 | ENKUR | Q8TC29 | 292 |
| OIT3 | CLEC4F | Q8N1N0 | 286 |
| OIT3 | ACAA2 | P42765 | 264 |
IntAct
41 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| OIT3 | MEOX2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MEOX2 | OIT3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | OTX1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | FBXO34 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | HOXA1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | CRCT1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | LCE1C | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | KRTAP11-1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | LCE1F | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | LCE3A | psi-mi:“MI:0915”(physical association) | 0.560 |
| OIT3 | VAC14 | psi-mi:“MI:0915”(physical association) | 0.560 |
| ECE1 | OIT3 | psi-mi:“MI:0915”(physical association) | 0.370 |
| TANK | CNOT1 | psi-mi:“MI:0914”(association) | 0.350 |
| Mecom | ESYT2 | psi-mi:“MI:0914”(association) | 0.350 |
| OIT3 | WNT10B | psi-mi:“MI:0914”(association) | 0.350 |
| OIT3 | MEOX2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OIT3 | VAC14 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OIT3 | KRTAP11-1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OIT3 | LCE1F | psi-mi:“MI:0915”(physical association) | 0.000 |
| OIT3 | HOXA1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OIT3 | CRCT1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (65): OIT3 (Two-hybrid), OIT3 (Affinity Capture-MS), OIT3 (Two-hybrid), OIT3 (Two-hybrid), OIT3 (Two-hybrid), CRCT1 (Two-hybrid), FBXO34 (Two-hybrid), KRTAP11-1 (Two-hybrid), LCE3A (Two-hybrid), LCE1C (Two-hybrid), LCE1F (Two-hybrid), NGLY1 (Affinity Capture-MS), CLSTN1 (Affinity Capture-MS), CRLF1 (Affinity Capture-MS), PDIA5 (Affinity Capture-MS)
ESM2 similar proteins: A1A5Y0, F7A4A7, O08523, O55225, O75443, O77780, P59510, P82279, P98089, P98092, Q0V8S9, Q0V8T0, Q0V8T3, Q0V8T4, Q0V8T5, Q0V8T6, Q0V8T7, Q0V8T8, Q0V8T9, Q29RU2, Q3ZCN5, Q5RCW9, Q5RD64, Q60411, Q62635, Q6DFV8, Q6PZE0, Q6V0K7, Q6ZRI0, Q80Z19, Q8CFM6, Q8CIZ8, Q8CJ69, Q8N2E2, Q8N8U9, Q8R4U0, Q8R4V5, Q8R4Y4, Q8VHS2, Q8WWQ8
Diamond homologs: Q29RU2, Q6DFV8, Q6V0K7, Q8N2E2, Q8R4V5, Q8WWZ8, Q9D733, P07911, P19218, P25291, D3ZHH1, Q8K1E3, P55259, O08523, O08524, O75443, P27590, P48733, Q5R5C1, Q862Z3, Q91X17, Q96PL2, Q9YH85
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
103 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 90 |
| Likely benign | 5 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
1678 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:72899034:TGGTC:T | donor_gain | 1.0000 |
| 10:72899035:GGTCG:G | donor_gain | 1.0000 |
| 10:72899036:GTC:G | donor_gain | 1.0000 |
| 10:72906594:A:AG | acceptor_gain | 1.0000 |
| 10:72906595:G:GG | acceptor_gain | 1.0000 |
| 10:72913303:TGCA:T | acceptor_loss | 1.0000 |
| 10:72913304:GCAGT:G | acceptor_loss | 1.0000 |
| 10:72913305:CA:C | acceptor_loss | 1.0000 |
| 10:72913306:A:AC | acceptor_loss | 1.0000 |
| 10:72913306:A:AG | acceptor_gain | 1.0000 |
| 10:72913307:G:GA | acceptor_gain | 1.0000 |
| 10:72913307:GT:G | acceptor_gain | 1.0000 |
| 10:72913307:GTC:G | acceptor_gain | 1.0000 |
| 10:72913307:GTCC:G | acceptor_gain | 1.0000 |
| 10:72913307:GTCCC:G | acceptor_gain | 1.0000 |
| 10:72924212:ACCCT:A | acceptor_gain | 1.0000 |
| 10:72924216:T:TA | acceptor_gain | 1.0000 |
| 10:72930537:GC:G | acceptor_gain | 1.0000 |
| 10:72930537:GCT:G | acceptor_gain | 1.0000 |
| 10:72930537:GCTGT:G | acceptor_gain | 1.0000 |
| 10:72930634:CAAGG:C | donor_loss | 1.0000 |
| 10:72930635:AAGG:A | donor_loss | 1.0000 |
| 10:72930636:AGGTG:A | donor_loss | 1.0000 |
| 10:72930638:G:GG | donor_gain | 1.0000 |
| 10:72930639:T:A | donor_loss | 1.0000 |
| 10:72893856:GTGG:G | donor_gain | 0.9900 |
| 10:72899037:TC:T | donor_gain | 0.9900 |
| 10:72899039:G:GG | donor_gain | 0.9900 |
| 10:72900371:CCATA:C | acceptor_loss | 0.9900 |
| 10:72900372:CATAG:C | acceptor_loss | 0.9900 |
AlphaMissense
3588 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 10:72924583:T:C | C436R | 0.996 |
| 10:72924590:C:A | A438D | 0.996 |
| 10:72911833:T:A | C262S | 0.995 |
| 10:72911834:G:C | C262S | 0.995 |
| 10:72898779:G:C | W59C | 0.994 |
| 10:72898779:G:T | W59C | 0.994 |
| 10:72911794:T:C | C249R | 0.994 |
| 10:72911833:T:C | C262R | 0.994 |
| 10:72913319:T:A | C268S | 0.994 |
| 10:72913320:G:C | C268S | 0.994 |
| 10:72924584:G:A | C436Y | 0.994 |
| 10:72924585:C:G | C436W | 0.994 |
| 10:72930618:T:G | F483C | 0.994 |
| 10:72932369:T:C | C495R | 0.994 |
| 10:72932371:C:G | C495W | 0.994 |
| 10:72911794:T:A | C249S | 0.993 |
| 10:72911795:G:C | C249S | 0.993 |
| 10:72911834:G:A | C262Y | 0.993 |
| 10:72913397:T:A | C294S | 0.993 |
| 10:72913398:G:C | C294S | 0.993 |
| 10:72924343:T:C | C356R | 0.993 |
| 10:72932370:G:A | C495Y | 0.993 |
| 10:72911749:T:A | C234S | 0.992 |
| 10:72911750:G:C | C234S | 0.992 |
| 10:72911835:C:G | C262W | 0.992 |
| 10:72924344:G:A | C356Y | 0.992 |
| 10:72924583:T:A | C436S | 0.992 |
| 10:72924584:G:C | C436S | 0.992 |
| 10:72906673:T:A | C208S | 0.991 |
| 10:72906674:G:C | C208S | 0.991 |
dbSNP variants (sampled 300 via entrez): RS1000054734 (10:72913081 C>A,T), RS1000089075 (10:72932000 C>T), RS1000212614 (10:72928034 A>G), RS1000314997 (10:72905955 T>C), RS1000380584 (10:72892118 A>T), RS1000550383 (10:72926493 C>T), RS1000575958 (10:72919629 C>G), RS1000668158 (10:72912898 G>A), RS1000683781 (10:72932977 C>T), RS1000686730 (10:72905668 A>G), RS1000803524 (10:72912567 G>A), RS1000813125 (10:72926206 C>T), RS1000858747 (10:72893763 G>A), RS1000919285 (10:72894099 A>G), RS1001059509 (10:72920148 C>T)
Disease associations
OMIM: gene MIM:609330 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
6 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST006004_2 | Low density lipoprotein cholesterol levels | 9.000000e-15 |
| GCST006034_23 | Total cholesterol levels | 3.000000e-09 |
| GCST010002_290 | Refractive error | 2.000000e-17 |
| GCST010866_143 | Coronary artery disease | 4.000000e-11 |
| GCST011346_60 | Total cholesterol levels | 7.000000e-09 |
| GCST011347_36 | Low density lipoprotein cholesterol levels | 7.000000e-12 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004611 | low density lipoprotein cholesterol measurement |
| EFO:0004574 | total cholesterol measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
16 total (human), top 16 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| bisphenol A | affects cotreatment, increases methylation, decreases expression, decreases reaction, increases abundance | 2 |
| Benzo(a)pyrene | affects methylation, increases expression, increases methylation | 2 |
| aristolochic acid I | increases expression | 1 |
| fluorene-9-bisphenol | increases expression | 1 |
| ginger extract | increases abundance, decreases expression, decreases reaction | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Fulvestrant | affects cotreatment, increases methylation | 1 |
| Acetaminophen | decreases expression | 1 |
| Atrazine | increases expression | 1 |
| Oils, Volatile | increases abundance, decreases expression, decreases reaction | 1 |
| Plant Extracts | affects cotreatment, decreases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Triclosan | decreases expression | 1 |
| Valproic Acid | affects expression | 1 |
| Cadmium Chloride | increases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.