OLFML3
geneOn this page
Also known as HNOEL-isoOLF44
Summary
OLFML3 (olfactomedin like 3, HGNC:24956) is a protein-coding gene on chromosome 1p13.2, encoding Olfactomedin-like protein 3 (Q9NRN5). Secreted scaffold protein that plays an essential role in dorsoventral patterning during early development. It is a selective cancer dependency (DepMap: 27.9% of cell lines).
This gene encodes a member of the olfactomedin-like gene family which also includes genes encoding noelin, tiarin, myocilin, amassin, optimedin, photomedin, and latrophilin. The encoded protein is a secreted extracellular matrix glycoprotein with a C-terminal olfactomedin domain that facilitates protein-protein interactions, cell adhesion, and intercellular interactions. It serves as both a scaffold protein that recruits bone morphogenetic protein 1 to its substrate chordin, and as a vascular tissue remodeler with pro-angiogenic properties. Alternative splicing results in multiple transcript variants.
Source: NCBI Gene 56944 — RefSeq curated summary.
At a glance
- GWAS associations: 2
- Clinical variants (ClinVar): 72 total
- Cancer dependency (DepMap): dependent in 27.9% of screened cell lines
- MANE Select transcript:
NM_020190
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:24956 |
| Approved symbol | OLFML3 |
| Name | olfactomedin like 3 |
| Location | 1p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | HNOEL-iso, OLF44 |
| Ensembl gene | ENSG00000116774 |
| Ensembl biotype | protein_coding |
| OMIM | 610088 |
| Entrez | 56944 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 5 protein_coding, 2 protein_coding_CDS_not_defined
ENST00000320334, ENST00000369551, ENST00000393300, ENST00000491700, ENST00000633022, ENST00000854415, ENST00000933255
RefSeq mRNA: 3 — MANE Select: NM_020190
NM_001286352, NM_001286353, NM_020190
CCDS: CCDS65618, CCDS72839, CCDS870
Canonical transcript exons
ENST00000320334 — 3 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000784440 | 113980332 | 113980617 |
| ENSE00000800065 | 113979474 | 113979630 |
| ENSE00003841814 | 113980949 | 113982253 |
Expression profiles
Bgee: expression breadth ubiquitous, 133 present calls, max score 97.81.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 61.9543 / max 2433.2607, expressed in 1234 samples.
FANTOM5 promoters (2 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 4748 | 61.6798 | 1234 |
| 4751 | 0.2745 | 130 |
Top tissues by expression
133 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| gall bladder | UBERON:0002110 | 97.81 | gold quality |
| left uterine tube | UBERON:0001303 | 97.71 | gold quality |
| body of uterus | UBERON:0009853 | 97.66 | gold quality |
| right ovary | UBERON:0002118 | 97.64 | gold quality |
| placenta | UBERON:0001987 | 97.43 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.43 | gold quality |
| ovary | UBERON:0000992 | 97.39 | gold quality |
| left ovary | UBERON:0002119 | 97.39 | gold quality |
| endocervix | UBERON:0000458 | 97.37 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 97.23 | gold quality |
| myometrium | UBERON:0001296 | 96.81 | gold quality |
| stromal cell of endometrium | CL:0002255 | 96.39 | gold quality |
| fallopian tube | UBERON:0003889 | 96.14 | gold quality |
| omental fat pad | UBERON:0010414 | 95.57 | gold quality |
| vagina | UBERON:0000996 | 95.34 | gold quality |
| ectocervix | UBERON:0012249 | 95.31 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 94.91 | gold quality |
| uterine cervix | UBERON:0000002 | 94.82 | gold quality |
| mucosa of stomach | UBERON:0001199 | 94.20 | gold quality |
| endometrium | UBERON:0001295 | 94.06 | gold quality |
| urinary bladder | UBERON:0001255 | 93.95 | gold quality |
| adipose tissue | UBERON:0001013 | 93.92 | gold quality |
| right lung | UBERON:0002167 | 93.59 | gold quality |
| right atrium auricular region | UBERON:0006631 | 93.46 | gold quality |
| lung | UBERON:0002048 | 93.23 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 93.06 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 93.02 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 92.96 | gold quality |
| fundus of stomach | UBERON:0001160 | 92.92 | gold quality |
| ascending aorta | UBERON:0001496 | 92.80 | gold quality |
Single-cell (SCXA)
Detected in 19 experiment(s), a significant marker in 16.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-7008 | yes | 450.59 |
| E-MTAB-10287 | yes | 129.78 |
| E-MTAB-6701 | yes | 115.04 |
| E-HCAD-1 | yes | 79.04 |
| E-HCAD-10 | yes | 75.50 |
| E-MTAB-8410 | yes | 57.99 |
| E-GEOD-135922 | yes | 57.42 |
| E-HCAD-4 | yes | 19.18 |
| E-CURD-112 | yes | 15.48 |
| E-HCAD-13 | yes | 13.79 |
| E-GEOD-81547 | yes | 9.75 |
| E-MTAB-10042 | yes | 8.10 |
| E-MTAB-9388 | yes | 6.67 |
| E-GEOD-84465 | yes | 6.29 |
| E-MTAB-10553 | yes | 5.65 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
31 targeting OLFML3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-6857-5P | 99.87 | 65.32 | 985 |
| HSA-MIR-369-3P | 99.85 | 70.52 | 2264 |
| HSA-MIR-765 | 99.84 | 68.24 | 2442 |
| HSA-MIR-1296-3P | 99.72 | 64.04 | 636 |
| HSA-MIR-5700 | 99.64 | 69.88 | 2280 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-6797-5P | 99.61 | 66.55 | 2084 |
| HSA-MIR-486-3P | 99.51 | 66.82 | 1901 |
| HSA-MIR-3915 | 99.45 | 68.49 | 1905 |
| HSA-MIR-155-5P | 99.35 | 70.16 | 1509 |
| HSA-MIR-7515 | 99.31 | 68.22 | 1795 |
| HSA-MIR-4293 | 99.22 | 65.46 | 1263 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-491-5P | 99.13 | 65.98 | 1468 |
| HSA-MIR-6871-5P | 98.90 | 66.67 | 671 |
| HSA-MIR-5000-3P | 98.79 | 65.63 | 1251 |
| HSA-MIR-4722-5P | 98.46 | 66.34 | 1611 |
| HSA-MIR-624-3P | 98.37 | 67.06 | 1067 |
| HSA-MIR-4684-3P | 98.24 | 69.91 | 1075 |
| HSA-MIR-541-5P | 98.24 | 67.77 | 1181 |
| HSA-MIR-510-5P | 97.66 | 65.82 | 916 |
| HSA-MIR-3928-3P | 97.61 | 66.53 | 1096 |
| HSA-MIR-4727-3P | 96.75 | 64.97 | 415 |
| HSA-MIR-6822-3P | 96.60 | 66.06 | 680 |
| HSA-MIR-6750-5P | 93.94 | 66.68 | 797 |
| HSA-MIR-6822-5P | 93.94 | 66.34 | 812 |
Functional genomics
DepMap (CRISPR cell-line fitness): dependent in 27.9% of screened cell lines.
Literature-anchored findings (GeneRIF, showing 5)
- may have matrix-related function involved in human placental and embryonic development, or play a similar role in other physiological processes (PMID:15280020)
- This paper reports OLFML3 expression in human and baboon eye. The full coding DNA sequence has 1221 bp, from which an open reading frame of 406 amino acid was obtained. (PMID:23398349)
- Circadian Regulator CLOCK Recruits Immune-Suppressive Microglia into the GBM Tumor Microenvironment. (PMID:31919052)
- Surfaceome CRISPR screen identifies OLFML3 as a rhinovirus-inducible IFN antagonist. (PMID:34686207)
- Microglia-Derived Olfactomedin-like 3 Promotes Pro-Tumorigenic Microglial Function and Malignant Features of Glioma Cells. (PMID:34884869)
Cross-species orthologs
4 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | olfml3a | ENSDARG00000061852 |
| danio_rerio | olfml3b | ENSDARG00000062171 |
| mus_musculus | Olfml3 | ENSMUSG00000027848 |
| rattus_norvegicus | Olfml3 | ENSRNOG00000019211 |
Paralogs (9): MYOC (ENSG00000034971), OLFM4 (ENSG00000102837), OLFM2 (ENSG00000105088), OLFM3 (ENSG00000118733), OLFM1 (ENSG00000130558), OLFML2B (ENSG00000162745), OLFML1 (ENSG00000183801), OLFML2A (ENSG00000185585), GLDN (ENSG00000186417)
Protein
Protein identifiers
Olfactomedin-like protein 3 — Q9NRN5 (reviewed: Q9NRN5)
Alternative names: HNOEL-iso, hOLF44
All UniProt accessions (3): Q9NRN5, B4DNG0, M1LAK4
UniProt curated annotations — full annotation on UniProt →
Function. Secreted scaffold protein that plays an essential role in dorsoventral patterning during early development. Stabilizes axial formation by restricting chordin (CHRD) activity on the dorsal side. Acts by facilitating the association between the tolloid proteases and their substrate chordin (CHRD), leading to enhance chordin (CHRD) degradation. May have matrix-related function involved in placental and embryonic development, or play a similar role in other physiological processes.
Subcellular location. Secreted.
Tissue specificity. Abundant in placenta, moderate in liver and heart, whereas fairly weak in other tissues examined. On term placenta, mainly localized extracellularly surrounding the syncytiotrophoblastic cells and very rarely expressed in the maternal decidua layer.
Similarity. Belongs to the OLFML3 family.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q9NRN5-1 | 1 | yes |
| Q9NRN5-2 | 2 | |
| Q9NRN5-3 | 3 |
RefSeq proteins (3): NP_001273281, NP_001273282, NP_064575* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR003112 | Olfac-like_dom | Domain |
| IPR050605 | Olfactomedin-like_domain | Family |
Pfam: PF02191
UniProt features (15 total): splice variant 4, sequence conflict 4, glycosylation site 2, signal peptide 1, chain 1, domain 1, coiled-coil region 1, disulfide bond 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q9NRN5-F1 | 87.21 | 0.69 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Disulfide bonds (1): 135–328
Glycosylation sites (2): 177, 248
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 163 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_COLON_TUMORAL_MACROPHAGE_UP, E2F4DP1_01, XU_GH1_AUTOCRINE_TARGETS_UP, SENESE_HDAC1_AND_HDAC2_TARGETS_DN, TERAMOTO_OPN_TARGETS_CLUSTER_6, E2F_Q3, GATA6_01, ONDER_CDH1_TARGETS_2_UP, AACTTT_UNKNOWN, BENPORATH_NOS_TARGETS, DOUGLAS_BMI1_TARGETS_UP, DBP_Q6, RIGGI_EWING_SARCOMA_PROGENITOR_UP, DAVICIONI_RHABDOMYOSARCOMA_PAX_FOXO1_FUSION_DN, YNGTTNNNATT_UNKNOWN
GO Biological Process (1): signal transduction (GO:0007165)
GO Molecular Function (0):
GO Cellular Component (3): obsolete extracellular space (GO:0005615), extracellular vesicle (GO:1903561), extracellular region (GO:0005576)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cell communication | 1 |
| cellular process | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| extracellular region | 1 |
| vesicle | 1 |
| extracellular membrane-bounded organelle | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
880 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| OLFML3 | TMEM119 | Q4V9L6 | 742 |
| OLFML3 | P2RY12 | Q9H244 | 733 |
| OLFML3 | GPR34 | Q9UPC5 | 678 |
| OLFML3 | SALL1 | Q9NSC2 | 571 |
| OLFML3 | P2RY13 | Q9BPV8 | 500 |
| OLFML3 | TREM2 | Q9NZC2 | 500 |
| OLFML3 | BMP4 | P12644 | 493 |
| OLFML3 | CX3CR1 | P49238 | 487 |
| OLFML3 | CSF1R | P07333 | 480 |
| OLFML3 | TGFBR1 | P36897 | 444 |
| OLFML3 | RSBN1 | Q5VWQ0 | 438 |
| OLFML3 | DENND2C | Q68D51 | 405 |
| OLFML3 | AMPD1 | P23109 | 396 |
| OLFML3 | PPARG | P37231 | 390 |
| OLFML3 | OGN | P20774 | 389 |
IntAct
18 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| SDF2L1 | OLFM2 | psi-mi:“MI:0914”(association) | 0.640 |
| FBXO2 | TMEM131L | psi-mi:“MI:0914”(association) | 0.530 |
| OLFML3 | Dlg4 | psi-mi:“MI:0407”(direct interaction) | 0.440 |
| OLFML3 | UQCR10 | psi-mi:“MI:0915”(physical association) | 0.400 |
| OLFML3 | MAP7D2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| DPAGT1 | ALOX12B | psi-mi:“MI:0914”(association) | 0.350 |
| KMO | HSPA7 | psi-mi:“MI:0914”(association) | 0.350 |
| C1orf54 | QSOX1 | psi-mi:“MI:0914”(association) | 0.350 |
| CLGN | TMEM131L | psi-mi:“MI:0914”(association) | 0.350 |
| LCN6 | HIGD1C | psi-mi:“MI:0914”(association) | 0.350 |
| MFAP4 | PROS1 | psi-mi:“MI:0914”(association) | 0.350 |
| PATE1 | AGRN | psi-mi:“MI:0914”(association) | 0.350 |
| CKMT2 | OLFML3 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OLFML3 | FEZ1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| OLFML3 | SETDB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| HSPB3 | OLFML3 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (14): MAP7D2 (Affinity Capture-MS), OLFML3 (Affinity Capture-MS), OLFML3 (Affinity Capture-MS), OLFML3 (Two-hybrid), OLFML3 (Two-hybrid), FEZ1 (Two-hybrid), SETDB1 (Two-hybrid), UQCR10 (Proximity Label-MS), OLFML3 (Affinity Capture-MS), OLFML3 (Affinity Capture-MS), MAP7D2 (Affinity Capture-MS), OLFML3 (Positive Genetic), OLFML3 (Cross-Linking-MS (XL-MS)), OLFML3 (Two-hybrid)
ESM2 similar proteins: A2BD09, B0BNI5, B5MFE9, D3Z7H8, O70624, O75326, O88632, P09531, P42917, P82350, Q0P3W2, Q0V9V5, Q0VCP3, Q13275, Q16586, Q25C36, Q28686, Q29RB4, Q2HJE5, Q2KHV9, Q2PT31, Q3UH93, Q4LFA9, Q594P2, Q64255, Q66H86, Q68BL7, Q6UWY5, Q6ZMI3, Q80WF4, Q80WL1, Q863A3, Q866N2, Q8BH02, Q8BHP7, Q8BK62, Q8BMF8, Q8IUL8, Q8IYS2, Q91X21
Diamond homologs: A2BD09, A4IIT5, A6QLD2, B0BNI5, B5MFE9, O70624, O88917, O88923, O88998, O94910, O95490, O95897, O97817, O97827, O97831, P63056, P63057, Q0P3W2, Q0V9V5, Q0VCP3, Q25C36, Q2PT31, Q3UZZ4, Q3V1G4, Q568Y7, Q594P2, Q62609, Q66H86, Q68BL7, Q68BL8, Q6UWY5, Q6UX06, Q80TR1, Q80TS3, Q863A3, Q866N2, Q8BHP7, Q8BK62, Q8BM13, Q8JZZ7
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
72 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 62 |
| Likely benign | 1 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
352 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 1:113979627:AGAGG:A | donor_loss | 1.0000 |
| 1:113979628:GAG:G | donor_gain | 1.0000 |
| 1:113979629:AGGT:A | donor_loss | 1.0000 |
| 1:113979631:G:GA | donor_loss | 1.0000 |
| 1:113979632:T:G | donor_loss | 1.0000 |
| 1:113980494:G:GT | donor_gain | 1.0000 |
| 1:113980585:G:T | donor_gain | 1.0000 |
| 1:113980614:ACAG:A | donor_gain | 1.0000 |
| 1:113980618:GT:G | donor_loss | 1.0000 |
| 1:113980619:T:A | donor_loss | 1.0000 |
| 1:113980932:T:A | acceptor_gain | 1.0000 |
| 1:113980947:A:AG | acceptor_gain | 1.0000 |
| 1:113980948:G:GG | acceptor_gain | 1.0000 |
| 1:113980948:GACT:G | acceptor_gain | 1.0000 |
| 1:113979631:G:GG | donor_gain | 0.9900 |
| 1:113980256:T:A | acceptor_gain | 0.9900 |
| 1:113980326:CTTCA:C | acceptor_loss | 0.9900 |
| 1:113980327:TTCA:T | acceptor_loss | 0.9900 |
| 1:113980328:TCA:T | acceptor_loss | 0.9900 |
| 1:113980329:CAG:C | acceptor_loss | 0.9900 |
| 1:113980330:A:G | acceptor_loss | 0.9900 |
| 1:113980331:G:GA | acceptor_loss | 0.9900 |
| 1:113980331:GGAAC:G | acceptor_gain | 0.9900 |
| 1:113980494:G:T | donor_gain | 0.9900 |
| 1:113980580:C:T | donor_gain | 0.9900 |
| 1:113980598:G:GT | donor_gain | 0.9900 |
| 1:113980612:TGAC:T | donor_gain | 0.9900 |
| 1:113980934:T:TA | acceptor_gain | 0.9900 |
| 1:113980945:TCA:T | acceptor_loss | 0.9900 |
| 1:113980946:CA:C | acceptor_loss | 0.9900 |
AlphaMissense
2610 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 1:113981020:T:A | W158R | 1.000 |
| 1:113981020:T:C | W158R | 1.000 |
| 1:113981400:G:C | W284C | 1.000 |
| 1:113981400:G:T | W284C | 1.000 |
| 1:113981022:G:C | W158C | 0.999 |
| 1:113981022:G:T | W158C | 0.999 |
| 1:113981096:T:G | F183C | 0.999 |
| 1:113981114:T:C | F189S | 0.999 |
| 1:113981206:T:G | Y220D | 0.999 |
| 1:113981277:A:C | K243N | 0.999 |
| 1:113981277:A:T | K243N | 0.999 |
| 1:113981398:T:A | W284R | 0.999 |
| 1:113981398:T:C | W284R | 0.999 |
| 1:113981443:G:C | A299P | 0.999 |
| 1:113981484:G:C | W312C | 0.999 |
| 1:113981484:G:T | W312C | 0.999 |
| 1:113981494:T:A | C316S | 0.999 |
| 1:113981494:T:C | C316R | 0.999 |
| 1:113981495:G:C | C316S | 0.999 |
| 1:113981531:G:A | C328Y | 0.999 |
| 1:113981532:T:G | C328W | 0.999 |
| 1:113981642:T:G | F365C | 0.999 |
| 1:113981707:T:A | W387R | 0.999 |
| 1:113981707:T:C | W387R | 0.999 |
| 1:113981709:G:C | W387C | 0.999 |
| 1:113981709:G:T | W387C | 0.999 |
| 1:113981015:G:A | G156D | 0.998 |
| 1:113981095:T:C | F183L | 0.998 |
| 1:113981096:T:C | F183S | 0.998 |
| 1:113981097:C:A | F183L | 0.998 |
dbSNP variants (sampled 300 via entrez): RS1000038435 (1:113980831 T>C,G), RS1000215173 (1:113978876 C>G), RS1002292470 (1:113980203 G>A,T), RS1002949728 (1:113978967 A>C,G), RS1003212430 (1:113978227 T>A,C), RS1003393145 (1:113978732 T>A), RS1004148338 (1:113981572 C>T), RS1004177716 (1:113981245 GGT>G), RS1004783262 (1:113981711 A>G,T), RS1005708130 (1:113978537 C>A,T), RS1006977701 (1:113979558 A>G), RS1007067184 (1:113979560 G>A), RS1007393744 (1:113978504 C>T), RS1007471531 (1:113978299 T>C), RS1010276533 (1:113979231 C>T)
Disease associations
OMIM: gene MIM:610088 | disease phenotypes:
GenCC curated gene-disease
Mondo (1): prostate cancer (MONDO:0008315)
Orphanet (1): Familial prostate cancer (Orphanet:1331)
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST001762_676 | Obesity-related traits | 2.000000e-06 |
| GCST004866_5 | Alopecia areata | 7.000000e-07 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0005134 | amino acid measurement |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D011471 | Prostatic Neoplasms | C04.588.945.440.770; C12.100.500.260.750; C12.100.500.565.625; C12.200.294.260.750; C12.200.294.565.625; C12.200.758.409.750; C12.900.619.750 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
64 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects cotreatment, increases expression, affects expression, decreases expression | 8 |
| bisphenol A | increases expression, affects cotreatment | 5 |
| Estradiol | affects cotreatment, increases expression | 4 |
| Genistein | affects cotreatment, increases expression | 4 |
| trichostatin A | affects cotreatment, increases expression | 3 |
| Benzo(a)pyrene | affects methylation, decreases expression, increases expression | 3 |
| Cyclosporine | decreases expression | 3 |
| entinostat | increases expression, affects cotreatment | 2 |
| belinostat | increases expression, affects cotreatment | 2 |
| Resveratrol | increases expression, affects cotreatment, decreases expression | 2 |
| Arsenic Trioxide | decreases expression | 2 |
| Vorinostat | affects cotreatment, increases expression | 2 |
| Panobinostat | affects cotreatment, increases expression | 2 |
| Zearalenone | increases expression | 2 |
| FR900359 | decreases phosphorylation | 1 |
| bisphenol F | increases expression, affects cotreatment | 1 |
| daidzein | affects cotreatment, increases expression | 1 |
| testosterone undecanoate | decreases expression, affects cotreatment | 1 |
| terbufos | increases methylation | 1 |
| o,p’-DDT | increases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| glycitein | affects cotreatment, increases expression | 1 |
| corosolic acid | increases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, increases expression | 1 |
| abrine | decreases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| (+)-JQ1 compound | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Acetaminophen | decreases expression | 1 |
| Ethanol | decreases expression | 1 |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00029224 | PHASE4 | COMPLETED | Treatment With Zoledronic Acid in Patients With Breast Cancer, Multiple Myeloma, and Prostate Cancer With Cancer Related Bone Lesions |
| NCT00035997 | PHASE4 | COMPLETED | Open-label Trial on the Effect of I.V. Zoledronic Acid 4 mg on Bone Density in Hormone Sensitive Prostate Cancer Patients With Bone Metastasis |
| NCT00063609 | PHASE4 | COMPLETED | The Effect of Zoledronic Acid on Bone Loss in Prostate Cancer Patients Undergoing Androgen Deprivation Therapy |
| NCT00103623 | PHASE4 | SUSPENDED | The Plenaxis® Experience Study |
| NCT00106392 | PHASE4 | COMPLETED | A Safety and Efficacy Study of Prograf in the Prevention of Erectile Dysfunction After Radical Prostatectomy |
| NCT00185029 | PHASE4 | UNKNOWN | MR-Lymphography and Lymph Node Staging in Prostate Cancer |
| NCT00199485 | PHASE4 | COMPLETED | Angelica Sinensis for the Treatment of Hot Flashes in Men Undergoing LHRH Therapy for Prostate Cancer |
| NCT00219219 | PHASE4 | COMPLETED | Zoledronic Acid in the Prevention of Skeletal-related Events in Hormone Refractory and Hormone-sensitive Prostate Cancer Patients With Bone Metastases |
| NCT00219271 | PHASE4 | COMPLETED | Effect Of Zoledronic Acid On Circulating And Bone Marrow-Residing Prostate Cancer Cells In Patients With Clinically Localized Prostate Cancer |
| NCT00237146 | PHASE4 | COMPLETED | Study to Evaluate Zoledronic Acid on Quality of Life and Skeletal-related Events as Adjuvant Treatment in Patients With Hormone-naïve Prostate Cancer and Bone Metastasis Who Have Undergone Orchiectomy |
| NCT00242554 | PHASE4 | COMPLETED | Open-label Phase IV Clinical Trial to Evaluate the Safety and Tolerability of Zoledronic Acid in Patients With Prostate Cancer and Bone Metastases |
| NCT00280098 | PHASE4 | COMPLETED | Docetaxel in the Treatment of Hormone Refractory Prostate Cancer |
| NCT00293696 | PHASE4 | COMPLETED | Casodex/Zoladex Biomarkers in Localised Prostate Cancer |
| NCT00334139 | PHASE4 | COMPLETED | Effect of Zoledronic Acid on Bone Metabolism in Patients With Bone Metastasis and Prostate or Breast Cancer |
| NCT00375765 | PHASE4 | COMPLETED | Effects On Dihydrotestosterone Regulated Gene Expression In Benign Prostatic Hyperplasia Or Prostate Cancer |
| NCT00391690 | PHASE4 | COMPLETED | Evaluation of Bone Markers as Diagnostic Tools for Early Detection of Bone Metastases in Patients With High Risk Prostate Cancer |
| NCT00422708 | PHASE4 | COMPLETED | Local Anesthesia for Prostate Biopsy |
| NCT00526331 | PHASE4 | COMPLETED | Evaluation of Arterial Pressure Based Cardiac Output for Goal-Directed Perioperative Therapy |
| NCT00590213 | PHASE4 | COMPLETED | Compare the Value of Prophylactic Versus Therapeutic Breast Radiotherapy in CASODEX |
| NCT00629330 | PHASE4 | TERMINATED | Dissemination of Prostate Cancer Screening to PCP’s in African American Communities |
| NCT00771966 | PHASE4 | COMPLETED | Radical Prostatectomy and Perioperative Fluid Therapy |
| NCT00805701 | PHASE4 | COMPLETED | Study Assessing The Efficacy And Safety Of Avodart (Dutasteride) At Improving Urinary Symptoms In Men With Prostate Cancer Who Are Undergoing Seed Implantation |
| NCT00859027 | PHASE4 | COMPLETED | Effect Of Risedronate On Bone Mass In Older Men Receiving Neoadjuvant Therapy For Prostate Cancer |
| NCT00906269 | PHASE4 | UNKNOWN | Can Hyperbaric Oxygen Improve Erectile Function Following Surgery for Prostate Cancer |
| NCT00953277 | PHASE4 | COMPLETED | Study of Nerve Reconstruction Using AVANCE in Subjects Who Undergo Robotic Assisted Prostatectomy for Treatment of Prostate Cancer |
| NCT00982800 | PHASE4 | COMPLETED | Does Postoperative Gabapentin Reduce Pain, Opioid Consumption and Anxiety and Have a Positive Effect on Health Related Quality of Life After Radical Prostatectomy? |
| NCT01083199 | PHASE4 | COMPLETED | Global Performance Evaluation of the AMS CONTINUUM™ Device |
| NCT01136226 | PHASE4 | COMPLETED | Evaluate Recovery of Testosterone for Patients Using Eligard |
| NCT01161563 | PHASE4 | COMPLETED | Randomized Crossover Trial to Assess the Tolerability of Gonadotropin Releasing Hormone (GnRH) Analogue Administration |
| NCT01230905 | PHASE4 | COMPLETED | Study to Monitor the Effects of Androgen Suppression Treatment on the Heart |
| NCT01296672 | PHASE4 | COMPLETED | 3 Month Finasteride Challenge Test Can Significantly Improve the Performance of Screening for Prostate Cancer |
| NCT01365143 | PHASE4 | TERMINATED | Prospective Randomized Trial Comparing Robotic Versus Open Radical Prostatectomy |
| NCT01379742 | PHASE4 | UNKNOWN | Comparison of Between ThinSeed™ and OncoSeed™ for Permanent Prostate Brachytherapy |
| NCT01486563 | PHASE4 | COMPLETED | Hydroxyethyl Starch and Renal Function After Radical Prostatectomy |
| NCT01511874 | PHASE4 | COMPLETED | Efficacy and Safety Study of ELIGARD 22.5mg With Prostate Cancer |
| NCT01512472 | PHASE4 | TERMINATED | Firmagon (Degarelix) Intermittent Therapy |
| NCT01547416 | PHASE4 | COMPLETED | The Effect of Combined General/Epidural Anesthesia Versus General Anesthesia on Diaphragmatic Function |
| NCT01571544 | PHASE4 | COMPLETED | The Use of Thermal Suits as Preventing Hypothermia During Surgery |
| NCT01581749 | PHASE4 | UNKNOWN | Evaluation of Truebeam for Low-Intermediate Risk Prostate Cancer |
| NCT01649635 | PHASE4 | COMPLETED | Study of Cabazitaxel Combined With Prednisone and Prophylaxis of Neutropenia Complications in the Treatment of Patients With Metastatic Castration-resistant Prostate Cancer |
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): alopecia areata