OLIG3
geneOn this page
Also known as Bhlhb7bHLHe20
Summary
OLIG3 (oligodendrocyte transcription factor 3, HGNC:18003) is a protein-coding gene on chromosome 6q23.3, encoding Oligodendrocyte transcription factor 3 (Q7RTU3). May determine the distinct specification program of class A neurons in the dorsal part of the spinal cord and suppress specification of class B neurons.
Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in axon development; positive regulation of transcription by RNA polymerase II; and sensory organ development. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II; spinal cord motor neuron cell fate specification; and spinal cord motor neuron migration. Predicted to be located in chromatin. Predicted to be active in nucleus.
Source: NCBI Gene 167826 — RefSeq curated summary.
At a glance
- GWAS associations: 21
- Clinical variants (ClinVar): 44 total
- MANE Select transcript:
NM_175747
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:18003 |
| Approved symbol | OLIG3 |
| Name | oligodendrocyte transcription factor 3 |
| Location | 6q23.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | Bhlhb7, bHLHe20 |
| Ensembl gene | ENSG00000177468 |
| Ensembl biotype | protein_coding |
| OMIM | 609323 |
| Entrez | 167826 |
Gene structure
Transcript identifiers
Ensembl transcripts: 1 — 1 protein_coding
ENST00000367734
RefSeq mRNA: 1 — MANE Select: NM_175747
NM_175747
CCDS: CCDS5186
Canonical transcript exons
ENST00000367734 — 1 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001445513 | 137492199 | 137494394 |
Expression profiles
Bgee: expression breadth broad, 15 present calls, max score 53.55.
FANTOM5 (CAGE): breadth broad, TPM avg 2.3116 / max 169.6180, expressed in 191 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 75823 | 2.3116 | 191 |
Top tissues by expression
237 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| islet of Langerhans | UBERON:0000006 | 53.55 | gold quality |
| cerebellar vermis | UBERON:0004720 | 49.48 | gold quality |
| thymus | UBERON:0002370 | 44.46 | gold quality |
| lower lobe of lung | UBERON:0008949 | 43.40 | silver quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 43.37 | gold quality |
| amniotic fluid | UBERON:0000173 | 42.81 | gold quality |
| secondary oocyte | CL:0000655 | 42.57 | gold quality |
| quadriceps femoris | UBERON:0001377 | 42.30 | gold quality |
| vastus lateralis | UBERON:0001379 | 41.41 | gold quality |
| superficial temporal artery | UBERON:0001614 | 41.33 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 41.10 | gold quality |
| mucosa of paranasal sinus | UBERON:0005030 | 40.98 | gold quality |
| ganglionic eminence | UBERON:0004023 | 40.61 | gold quality |
| jejunal mucosa | UBERON:0000399 | 40.59 | gold quality |
| biceps brachii | UBERON:0001507 | 40.57 | gold quality |
| medulla oblongata | UBERON:0001896 | 40.52 | gold quality |
| epithelium of nasopharynx | UBERON:0001951 | 40.45 | gold quality |
| myocardium | UBERON:0002349 | 40.45 | gold quality |
| gingival epithelium | UBERON:0001949 | 40.43 | gold quality |
| duodenum | UBERON:0002114 | 40.34 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 40.33 | gold quality |
| esophagus squamous epithelium | UBERON:0006920 | 40.29 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 40.27 | gold quality |
| jejunum | UBERON:0002115 | 40.18 | gold quality |
| cartilage tissue | UBERON:0002418 | 40.06 | gold quality |
| oviduct epithelium | UBERON:0004804 | 40.03 | gold quality |
| mammary duct | UBERON:0001765 | 39.98 | gold quality |
| mucosa of sigmoid colon | UBERON:0004993 | 39.95 | gold quality |
| deltoid | UBERON:0001476 | 39.83 | gold quality |
| saphenous vein | UBERON:0007318 | 39.83 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 1.15 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
1 targets.
| Target | Regulation |
|---|---|
| NEUROG1 | Unknown |
JASPAR motifs
| Motif | Name | Family |
|---|---|---|
| MA0827.1 | OLIG3 | Tal-related |
JASPAR matrix evidence (PMIDs): PMID:20959288
miRNA regulators (miRDB)
77 targeting OLIG3, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-7110-3P | 100.00 | 73.18 | 2486 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-6873-3P | 100.00 | 71.42 | 2626 |
| HSA-MIR-5011-5P | 100.00 | 83.46 | 5820 |
| HSA-MIR-574-5P | 100.00 | 66.01 | 989 |
| HSA-MIR-34A-5P | 99.99 | 71.21 | 1784 |
| HSA-MIR-449A | 99.99 | 71.05 | 1776 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-507 | 99.97 | 70.11 | 1915 |
| HSA-MIR-34C-5P | 99.97 | 70.45 | 1577 |
| HSA-MIR-449B-5P | 99.97 | 70.26 | 1580 |
| HSA-MIR-557 | 99.96 | 70.01 | 1640 |
| HSA-MIR-335-3P | 99.93 | 73.36 | 4958 |
| HSA-MIR-6508-5P | 99.92 | 70.67 | 2465 |
| HSA-MIR-3119 | 99.92 | 71.34 | 2390 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-9902 | 99.89 | 69.15 | 2250 |
| HSA-MIR-579-3P | 99.86 | 71.66 | 3628 |
| HSA-MIR-8067 | 99.86 | 69.59 | 2260 |
| HSA-MIR-664B-3P | 99.84 | 71.65 | 3590 |
| HSA-MIR-6756-5P | 99.82 | 67.97 | 2466 |
| HSA-MIR-7110-5P | 99.80 | 67.84 | 1712 |
| HSA-MIR-6842-5P | 99.80 | 67.54 | 1587 |
| HSA-MIR-6817-3P | 99.79 | 68.35 | 2126 |
Literature-anchored findings (GeneRIF, showing 2)
- SNP within the OLIG3/TNFAIP3 locus (rs6920220) was associated with being less likely to maintain MTX monotherapy (PMID:20921970)
- Two identified variants revealed novel candidate genes for hip and knee osteoarthritis. OLIG3 and FIP1L1 have specific roles in transcription and may effect expression of other genes. Identified variants in these genes may thus have a role in the regulatory events leading to osteoarthritis. (PMID:30157244)
Cross-species orthologs
8 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | olig3 | ENSDARG00000074253 |
| mus_musculus | Olig3 | ENSMUSG00000045591 |
| rattus_norvegicus | Olig3 | ENSRNOG00000064127 |
| drosophila_melanogaster | amos | FBGN0003270 |
| drosophila_melanogaster | ato | FBGN0010433 |
| drosophila_melanogaster | tap | FBGN0015550 |
| caenorhabditis_elegans | WBGENE00003018 | |
| caenorhabditis_elegans | WBGENE00003595 |
Paralogs (15): NEUROG3 (ENSG00000122859), NEUROD4 (ENSG00000123307), BHLHE23 (ENSG00000125533), NEUROD1 (ENSG00000162992), NEUROD6 (ENSG00000164600), ATOH8 (ENSG00000168874), NEUROD2 (ENSG00000171532), ATOH1 (ENSG00000172238), NEUROG2 (ENSG00000178403), ATOH7 (ENSG00000179774), BHLHA15 (ENSG00000180535), BHLHE22 (ENSG00000180828), NEUROG1 (ENSG00000181965), OLIG1 (ENSG00000184221), OLIG2 (ENSG00000205927)
Protein
Protein identifiers
Oligodendrocyte transcription factor 3 — Q7RTU3 (reviewed: Q7RTU3)
Alternative names: Class B basic helix-loop-helix protein 7, Class E basic helix-loop-helix protein 20
All UniProt accessions (1): Q7RTU3
UniProt curated annotations — full annotation on UniProt →
Function. May determine the distinct specification program of class A neurons in the dorsal part of the spinal cord and suppress specification of class B neurons.
Subcellular location. Nucleus.
RefSeq proteins (1): NP_786923* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR011598 | bHLH_dom | Domain |
| IPR032659 | Olig3_bHLH | Domain |
| IPR036638 | HLH_DNA-bd_sf | Homologous_superfamily |
| IPR050359 | bHLH_transcription_factors | Family |
Pfam: PF00010
UniProt features (7 total): compositionally biased region 3, chain 1, domain 1, region of interest 1, coiled-coil region 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q7RTU3-F1 | 63.67 | 0.26 |
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 140 (showing top):
GOBP_SPINAL_CORD_DEVELOPMENT, CREL_01, BENPORATH_ES_WITH_H3K27ME3, GOBP_NEUROGENESIS, RACCACAR_AML_Q6, FOXO4_01, FOXO1_01, GOBP_CELL_DIFFERENTIATION_IN_SPINAL_CORD, GOBP_SPINAL_CORD_MOTOR_NEURON_DIFFERENTIATION, EVI1_05, GOBP_VENTRAL_SPINAL_CORD_DEVELOPMENT, GOBP_SPINAL_CORD_MOTOR_NEURON_CELL_FATE_SPECIFICATION, AML_Q6, GOBP_NEURON_FATE_SPECIFICATION, GOBP_CENTRAL_NERVOUS_SYSTEM_NEURON_DIFFERENTIATION
GO Biological Process (8): negative regulation of transcription by RNA polymerase II (GO:0000122), sensory organ development (GO:0007423), spinal cord motor neuron cell fate specification (GO:0021520), positive regulation of transcription by RNA polymerase II (GO:0045944), axon development (GO:0061564), spinal cord motor neuron migration (GO:0097476), regulation of gene expression (GO:0010468), spinal cord motor neuron differentiation (GO:0021522)
GO Molecular Function (6): DNA-binding transcription factor activity, RNA polymerase II-specific (GO:0000981), protein dimerization activity (GO:0046983), E-box binding (GO:0070888), sequence-specific double-stranded DNA binding (GO:1990837), DNA binding (GO:0003677), protein binding (GO:0005515)
GO Cellular Component (2): chromatin (GO:0000785), nucleus (GO:0005634)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| regulation of transcription by RNA polymerase II | 3 |
| transcription by RNA polymerase II | 2 |
| negative regulation of DNA-templated transcription | 1 |
| animal organ development | 1 |
| spinal cord motor neuron differentiation | 1 |
| neuron fate specification | 1 |
| positive regulation of DNA-templated transcription | 1 |
| neuron projection development | 1 |
| motor neuron migration | 1 |
| gene expression | 1 |
| regulation of macromolecule biosynthetic process | 1 |
| cell differentiation in spinal cord | 1 |
| ventral spinal cord development | 1 |
| central nervous system neuron differentiation | 1 |
| chromatin | 1 |
| RNA polymerase II transcription regulatory region sequence-specific DNA binding | 1 |
| DNA-binding transcription factor activity | 1 |
| protein binding | 1 |
| RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1 |
| double-stranded DNA binding | 1 |
| sequence-specific DNA binding | 1 |
| nucleic acid binding | 1 |
| binding | 1 |
| chromosome | 1 |
| cellular anatomical structure | 1 |
| intracellular membrane-bounded organelle | 1 |
Protein interactions and networks
STRING
866 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| OLIG3 | TNFAIP3 | P21580 | 801 |
| OLIG3 | AVPR2 | P30518 | 668 |
| OLIG3 | PTPN22 | Q9Y2R2 | 644 |
| OLIG3 | PIP4K2C | Q8TBX8 | 626 |
| OLIG3 | TRAF1 | Q13077 | 606 |
| OLIG3 | DBX1 | A6NMT0 | 571 |
| OLIG3 | PADI4 | Q9UM07 | 568 |
| OLIG3 | GBX2 | P52951 | 560 |
| OLIG3 | NKX2-2 | O95096 | 553 |
| OLIG3 | TCF3 | P15883 | 539 |
| OLIG3 | KIF5A | Q12840 | 536 |
| OLIG3 | IRF5 | Q13568 | 532 |
| OLIG3 | TNFRSF14 | Q92956 | 491 |
| OLIG3 | DBX2 | Q6ZNG2 | 484 |
| OLIG3 | PAX6 | P26367 | 479 |
IntAct
110 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| OLIG3 | TRAF1 | psi-mi:“MI:0915”(physical association) | 0.720 |
| MDFI | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| OLIG3 | MDFI | psi-mi:“MI:0915”(physical association) | 0.720 |
| TRAF1 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.720 |
| ARID5A | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.600 |
| TLE5 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| BYSL | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OLIG3 | BYSL | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP10-8 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CADPS | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| MFAP1 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP1-1 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CYSRT1 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OLIG3 | CARD10 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP6-3 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| PROP1 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| OLIG3 | WWOX | psi-mi:“MI:0915”(physical association) | 0.560 |
| OLIG3 | PLAGL2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| KRTAP19-5 | OLIG3 | psi-mi:“MI:0915”(physical association) | 0.560 |
BioGRID (35): OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), TRAF1 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid), OLIG3 (Two-hybrid)
ESM2 similar proteins: A3KMR8, A7Z017, B3DM47, B4R090, D3ZNT6, O35317, O35984, O42290, O57342, O75030, O75444, P10083, P23091, P25932, P40424, P40425, P40426, P41778, P54841, P54842, P54843, P54844, P56224, P57102, P61295, P61296, P79745, P79746, Q05192, Q0V9K1, Q27350, Q2PFS4, Q32NP8, Q4U1U2, Q504L8, Q61039, Q6DE84, Q6PFG8, Q789F3, Q7RTU3
Diamond homologs: A8E5T6, B6VQA1, O09029, O09105, O13125, O13126, O16867, O35437, O42202, O42606, O43680, O45489, O57598, O88940, O96004, O96642, P10627, P13903, P46581, P48985, P48986, P48987, P57100, P57101, P57102, P59101, P61295, P61296, P70447, P70562, P70595, P70660, P70661, P79765, P79766, P79782, P79920, P97832, Q08DI0, Q0V9X5
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 30 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| Keratinization | 12 | 31.8× | 2e-14 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
44 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 42 |
| Likely benign | 2 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
92 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 6:137493354:A:AC | donor_gain | 0.9300 |
| 6:137493355:C:CC | donor_gain | 0.9300 |
| 6:137492862:C:CC | acceptor_gain | 0.8100 |
| 6:137492861:ACTGT:A | acceptor_gain | 0.7600 |
| 6:137493365:T:TA | donor_gain | 0.7300 |
| 6:137493319:C:CA | donor_gain | 0.7200 |
| 6:137492862:CTGT:C | acceptor_gain | 0.7100 |
| 6:137492863:T:A | acceptor_gain | 0.6700 |
| 6:137493348:CTGCT:C | donor_loss | 0.6300 |
| 6:137493350:GCTCA:G | donor_loss | 0.6300 |
| 6:137493351:CTCAC:C | donor_loss | 0.6300 |
| 6:137493352:TCACT:T | donor_loss | 0.6300 |
| 6:137493353:CA:C | donor_loss | 0.6300 |
| 6:137493354:ACTT:A | donor_loss | 0.6300 |
| 6:137493355:C:CA | donor_loss | 0.6300 |
| 6:137492900:T:TG | acceptor_gain | 0.6200 |
| 6:137493325:T:TA | donor_gain | 0.5900 |
| 6:137492860:AACTG:A | acceptor_gain | 0.5800 |
| 6:137493347:GCTGC:G | donor_loss | 0.5100 |
| 6:137492859:AAACT:A | acceptor_gain | 0.4800 |
| 6:137493355:CT:C | donor_gain | 0.4800 |
| 6:137492861:A:AC | acceptor_gain | 0.4600 |
| 6:137493349:TGCTC:T | donor_loss | 0.4500 |
| 6:137493355:CTTGA:C | donor_gain | 0.4400 |
| 6:137493143:TAC:T | donor_gain | 0.4200 |
| 6:137493322:T:TA | donor_gain | 0.4200 |
| 6:137492858:AAAAC:A | acceptor_gain | 0.3900 |
| 6:137493142:C:CT | donor_gain | 0.3700 |
| 6:137493143:T:TT | donor_gain | 0.3700 |
| 6:137493355:CTT:C | donor_gain | 0.3700 |
AlphaMissense
1766 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 6:137493439:G:C | C244W | 1.000 |
| 6:137493440:C:T | C244Y | 1.000 |
| 6:137493441:A:G | C244R | 1.000 |
| 6:137493450:A:G | C241R | 1.000 |
| 6:137493456:A:G | C239R | 1.000 |
| 6:137493731:A:G | L147P | 1.000 |
| 6:137493740:A:C | M144R | 1.000 |
| 6:137493749:A:G | L141P | 1.000 |
| 6:137493752:G:A | S140F | 1.000 |
| 6:137493753:A:G | S140P | 1.000 |
| 6:137493761:A:G | L137P | 1.000 |
| 6:137493761:A:T | L137H | 1.000 |
| 6:137493762:G:A | L137F | 1.000 |
| 6:137493763:C:A | M136I | 1.000 |
| 6:137493763:C:G | M136I | 1.000 |
| 6:137493763:C:T | M136I | 1.000 |
| 6:137493767:A:G | L135P | 1.000 |
| 6:137493770:A:C | I134S | 1.000 |
| 6:137493770:A:G | I134T | 1.000 |
| 6:137493770:A:T | I134N | 1.000 |
| 6:137493771:T:A | I134F | 1.000 |
| 6:137493773:T:C | Y133C | 1.000 |
| 6:137493774:A:C | Y133D | 1.000 |
| 6:137493775:G:C | N132K | 1.000 |
| 6:137493775:G:T | N132K | 1.000 |
| 6:137493776:T:A | N132I | 1.000 |
| 6:137493779:C:A | R131I | 1.000 |
| 6:137493782:G:A | A130V | 1.000 |
| 6:137493782:G:T | A130D | 1.000 |
| 6:137493783:C:G | A130P | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1001376852 (6:137492319 AC>A), RS1001769031 (6:137492033 C>T), RS1002205706 (6:137494470 C>G,T), RS1002367157 (6:137493293 G>A,C,T), RS1002408535 (6:137493116 C>G,T), RS1002629315 (6:137495315 A>G), RS1002765118 (6:137495465 G>C,T), RS1002787055 (6:137493492 G>T), RS1004568851 (6:137495207 AT>A), RS1004919917 (6:137494913 G>A), RS1005109891 (6:137493998 C>G,T), RS1005568345 (6:137496300 T>C), RS1006079764 (6:137495295 G>A), RS1006243038 (6:137496115 T>C), RS1006625273 (6:137492725 C>A)
Disease associations
OMIM: gene MIM:609323 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
21 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000122_1 | Rheumatoid arthritis | 1.000000e-09 |
| GCST000122_2 | Rheumatoid arthritis | 1.000000e-07 |
| GCST000232_6 | Rheumatoid arthritis | 2.000000e-09 |
| GCST000677_4 | Rheumatoid arthritis | 2.000000e-06 |
| GCST001198_63 | Multiple sclerosis | 1.000000e-08 |
| GCST001859_59 | Thiazide-induced adverse metabolic effects in hypertensive patients | 9.000000e-06 |
| GCST002955_1 | Forced expiratory volume in 1 second (occupational environmental exposures interaction) | 4.000000e-07 |
| GCST003075_10 | Cognitive decline rate in late mild cognitive impairment | 2.000000e-10 |
| GCST003075_127 | Cognitive decline rate in late mild cognitive impairment | 2.000000e-10 |
| GCST003129_28 | Primary biliary cholangitis | 1.000000e-10 |
| GCST003995_32 | Tonsillectomy | 3.000000e-08 |
| GCST005014_31 | Tonsillectomy | 3.000000e-08 |
| GCST005523_24 | Celiac disease | 5.000000e-30 |
| GCST005523_42 | Celiac disease | 2.000000e-07 |
| GCST006048_2 | Rheumatoid arthritis (ACPA-positive) | 2.000000e-18 |
| GCST007062_3 | Hodgkin’s lymphoma | 3.000000e-08 |
| GCST007400_14 | Systemic lupus erythematosus | 2.000000e-13 |
| GCST007798_79 | Asthma | 2.000000e-10 |
| GCST007800_65 | Asthma (childhood onset) | 3.000000e-13 |
| GCST008644_12 | Celiac disease and Rheumatoid arthritis | 3.000000e-27 |
| GCST009597_316 | Multiple sclerosis | 5.000000e-25 |
EFO canonical traits (5, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004530 | triglyceride measurement |
| EFO:0004314 | forced expiratory volume |
| EFO:0006993 | response to mineral dust exposure |
| EFO:0007710 | cognitive decline measurement |
| EFO:0007924 | tonsillectomy risk measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
38 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, affects cotreatment, increases expression, affects expression | 7 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | decreases expression, affects cotreatment, increases expression | 3 |
| Benzo(a)pyrene | affects methylation, decreases expression, decreases methylation, increases expression | 3 |
| Ethanol | affects cotreatment, increases expression, decreases expression | 2 |
| bisphenol A | decreases expression | 1 |
| N(4)-hydroxycytidine | increases expression | 1 |
| terbufos | increases methylation | 1 |
| trichostatin A | increases expression | 1 |
| arsenite | increases methylation | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| perfluorooctanoic acid | increases expression | 1 |
| S-(1,2-dichlorovinyl)cysteine | affects cotreatment, decreases expression, affects response to substance, increases expression | 1 |
| entinostat | affects cotreatment, increases expression | 1 |
| Chir 99021 | affects cotreatment, increases expression | 1 |
| ramelteon | decreases expression | 1 |
| nilotinib | increases expression | 1 |
| dorsomorphin | affects cotreatment, increases expression | 1 |
| Dabigatran | increases expression | 1 |
| Resveratrol | affects cotreatment, decreases expression | 1 |
| Panobinostat | affects cotreatment, increases expression | 1 |
| Abacavir | increases expression | 1 |
| Cadmium | decreases expression, increases abundance | 1 |
| Caffeine | increases expression | 1 |
| Diethylhexyl Phthalate | decreases expression | 1 |
| Fonofos | increases methylation | 1 |
| Fluorouracil | decreases expression | 1 |
| Folic Acid | increases expression, affects cotreatment | 1 |
| Lipopolysaccharides | increases expression, affects cotreatment, decreases expression, affects response to substance | 1 |
| Parathion | increases methylation | 1 |
| Phenytoin | increases expression | 1 |
Cellosaurus cell lines
3 cell lines: 3 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A4Z6 | SEES3-1V human OLIG3, clone1 | Embryonic stem cell | Male |
| CVCL_A4Z7 | SEES3-1V human OLIG3, clone2 | Embryonic stem cell | Male |
| CVCL_A4Z8 | SEES3-1V human OLIG3, clone3 | Embryonic stem cell | Male |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): celiac disease, Hodgkins lymphoma, primary biliary cholangitis