OPTN
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Also known as FIP2HYPLFIP-2TFIIIA-INTPNRPHIP7
Summary
OPTN (optineurin, HGNC:17142) is a protein-coding gene on chromosome 10p13, encoding Optineurin (Q96CV9). Plays an important role in the maintenance of the Golgi complex, in membrane trafficking, in exocytosis, through its interaction with myosin VI and Rab8.
This gene encodes the coiled-coil containing protein optineurin. Optineurin may play a role in normal-tension glaucoma and adult-onset primary open angle glaucoma. Optineurin interacts with adenovirus E3-14.7K protein and may utilize tumor necrosis factor-alpha or Fas-ligand pathways to mediate apoptosis, inflammation or vasoconstriction. Optineurin may also function in cellular morphogenesis and membrane trafficking, vesicle trafficking, and transcription activation through its interactions with the RAB8, huntingtin, and transcription factor IIIA proteins. Alternative splicing results in multiple transcript variants encoding the same protein.
Source: NCBI Gene 10133 — RefSeq curated summary.
At a glance
- Gene–disease (curated): amyotrophic lateral sclerosis type 12 (Definitive, ClinGen) — +3 more curated relationships
- GWAS associations: 4
- Clinical variants (ClinVar): 514 total — 35 pathogenic, 25 likely-pathogenic
- Phenotypes (HPO): 58
- MANE Select transcript:
NM_001008212
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:17142 |
| Approved symbol | OPTN |
| Name | optineurin |
| Location | 10p13 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | FIP2, HYPL, FIP-2, TFIIIA-INTP, NRP, HIP7 |
| Ensembl gene | ENSG00000123240 |
| Ensembl biotype | protein_coding |
| OMIM | 602432 |
| Entrez | 10133 |
Gene structure
Transcript identifiers
Ensembl transcripts: 94 — 90 protein_coding, 2 nonsense_mediated_decay, 2 protein_coding_CDS_not_defined
ENST00000263036, ENST00000378747, ENST00000378748, ENST00000378752, ENST00000378757, ENST00000378764, ENST00000424614, ENST00000430081, ENST00000469025, ENST00000482140, ENST00000486862, ENST00000487935, ENST00000867523, ENST00000867524, ENST00000867525, ENST00000867526, ENST00000867527, ENST00000867528, ENST00000867529, ENST00000867530, ENST00000867531, ENST00000867532, ENST00000867533, ENST00000867534, ENST00000867535, ENST00000867536, ENST00000867537, ENST00000867538, ENST00000867539, ENST00000867540, ENST00000867541, ENST00000867542, ENST00000867543, ENST00000867544, ENST00000867545, ENST00000867546, ENST00000867547, ENST00000867548, ENST00000867549, ENST00000867550, ENST00000867551, ENST00000867552, ENST00000867553, ENST00000867554, ENST00000867555, ENST00000867556, ENST00000867557, ENST00000867558, ENST00000867559, ENST00000867560, ENST00000867561, ENST00000921481, ENST00000921482, ENST00000942671, ENST00000942672, ENST00000942673, ENST00000942674, ENST00000942675, ENST00000942676, ENST00000942677, ENST00000942678, ENST00000942679, ENST00000942680, ENST00000942681, ENST00000942682, ENST00000942683, ENST00000942684, ENST00000942685, ENST00000942686, ENST00000942687, ENST00000942688, ENST00000942689, ENST00000942690, ENST00000942691, ENST00000942692, ENST00000942693, ENST00000942694, ENST00000942695, ENST00000942696, ENST00000942697, ENST00000942698, ENST00000942699, ENST00000942700, ENST00000942701, ENST00000942702, ENST00000942703, ENST00000942704, ENST00000942705, ENST00000942706, ENST00000942707, ENST00000942708, ENST00000942709, ENST00000942710, ENST00000942711
RefSeq mRNA: 4 — MANE Select: NM_001008212
NM_001008211, NM_001008212, NM_001008213, NM_021980
CCDS: CCDS7094
Canonical transcript exons
ENST00000378747 — 15 exons
| Exon | Start | End |
|---|---|---|
| ENSE00000691148 | 13118888 | 13119040 |
| ENSE00000691219 | 13127745 | 13127903 |
| ENSE00000837368 | 13110274 | 13110476 |
| ENSE00000837371 | 13122385 | 13122487 |
| ENSE00000837372 | 13123995 | 13124110 |
| ENSE00000837373 | 13125418 | 13125567 |
| ENSE00000837374 | 13125946 | 13126039 |
| ENSE00000999765 | 13108138 | 13108289 |
| ENSE00001956056 | 13100163 | 13100302 |
| ENSE00003512825 | 13109112 | 13109288 |
| ENSE00003550952 | 13133502 | 13133581 |
| ENSE00003594228 | 13132067 | 13132197 |
| ENSE00003637959 | 13116267 | 13116340 |
| ENSE00003722976 | 13112453 | 13112635 |
| ENSE00003738415 | 13136745 | 13138308 |
Expression profiles
Bgee: expression breadth ubiquitous, 302 present calls, max score 99.48.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 59.8427 / max 1157.9851, expressed in 1794 samples.
FANTOM5 promoters (8 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 103934 | 56.1908 | 1793 |
| 103935 | 1.7820 | 958 |
| 103937 | 0.7626 | 356 |
| 103936 | 0.4233 | 165 |
| 103932 | 0.3361 | 124 |
| 103930 | 0.1628 | 78 |
| 103931 | 0.1005 | 42 |
| 103933 | 0.0847 | 26 |
Top tissues by expression
302 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| amniotic fluid | UBERON:0000173 | 99.48 | gold quality |
| gastrocnemius | UBERON:0001388 | 99.46 | gold quality |
| muscle of leg | UBERON:0001383 | 99.39 | gold quality |
| muscle organ | UBERON:0001630 | 99.25 | gold quality |
| skeletal muscle organ | UBERON:0014892 | 99.25 | gold quality |
| hindlimb stylopod muscle | UBERON:0004252 | 99.24 | gold quality |
| gluteal muscle | UBERON:0002000 | 99.13 | gold quality |
| triceps brachii | UBERON:0001509 | 99.07 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.99 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 98.95 | gold quality |
| skeletal muscle tissue | UBERON:0001134 | 98.92 | gold quality |
| quadriceps femoris | UBERON:0001377 | 98.86 | gold quality |
| tendon | UBERON:0000043 | 98.75 | gold quality |
| tendon of biceps brachii | UBERON:0008188 | 98.75 | gold quality |
| diaphragm | UBERON:0001103 | 98.74 | gold quality |
| biceps brachii | UBERON:0001507 | 98.74 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.70 | gold quality |
| calcaneal tendon | UBERON:0003701 | 98.63 | gold quality |
| deltoid | UBERON:0001476 | 98.40 | gold quality |
| apex of heart | UBERON:0002098 | 98.09 | gold quality |
| muscle tissue | UBERON:0002385 | 97.91 | gold quality |
| tibialis anterior | UBERON:0001385 | 97.88 | gold quality |
| heart left ventricle | UBERON:0002084 | 97.50 | gold quality |
| left testis | UBERON:0004533 | 97.47 | gold quality |
| popliteal artery | UBERON:0002250 | 97.45 | gold quality |
| tibial artery | UBERON:0007610 | 97.45 | gold quality |
| mucosa of stomach | UBERON:0001199 | 97.42 | gold quality |
| cardiac ventricle | UBERON:0002082 | 97.40 | gold quality |
| sperm | CL:0000019 | 97.37 | gold quality |
| artery | UBERON:0001637 | 97.31 | gold quality |
Single-cell (SCXA)
Detected in 4 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9388 | yes | 10.66 |
| E-GEOD-110499 | no | 453.17 |
| E-CURD-112 | no | 3.38 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: yes
Downstream targets (CollecTRI)
4 targets.
| Target | Regulation |
|---|---|
| BDNF | Activation |
| NEFL | Activation |
| NTF3 | Activation |
| SNAP25 | Activation |
Upstream regulators (CollecTRI, top): IRF1, NFKB1, NFKB, NFKBIA, RELA
miRNA regulators (miRDB)
55 targeting OPTN, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-8485 | 100.00 | 77.57 | 4731 |
| HSA-MIR-6876-5P | 100.00 | 67.68 | 2126 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-3162-3P | 100.00 | 65.37 | 363 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4803 | 99.98 | 71.99 | 3117 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-7152-3P | 99.97 | 67.47 | 849 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-6825-5P | 99.96 | 69.81 | 3431 |
| HSA-MIR-1468-3P | 99.96 | 72.74 | 3797 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-10523-5P | 99.91 | 69.22 | 2038 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-182-5P | 99.87 | 74.03 | 2589 |
| HSA-MIR-6875-3P | 99.82 | 70.26 | 2983 |
| HSA-MIR-944 | 99.82 | 70.85 | 3042 |
| HSA-MIR-3150A-3P | 99.76 | 64.44 | 1640 |
| HSA-MIR-6763-5P | 99.76 | 64.68 | 1767 |
| HSA-MIR-4699-3P | 99.71 | 70.15 | 3142 |
| HSA-MIR-3682-3P | 99.58 | 67.63 | 865 |
| HSA-MIR-766-5P | 99.47 | 67.91 | 2225 |
| HSA-MIR-4318 | 99.38 | 66.94 | 1505 |
| HSA-MIR-4786-3P | 99.36 | 68.35 | 1390 |
| HSA-MIR-1272 | 99.34 | 68.79 | 878 |
| HSA-MIR-4506 | 99.34 | 67.47 | 526 |
| HSA-MIR-2116-5P | 99.32 | 69.34 | 1273 |
Literature-anchored findings (GeneRIF, showing 40)
- identified as an adult-onset primary open-angle glaucoma gene (PMID:11834836)
- Expression of optineurin in the trabecular meshwork is influenced by elevated intraocular pressure (PMID:12379221)
- This study suggests that alterations in OPTN gene expression are not involved in the mechanisms regulating aqueous humor outflow after an increase in intraocular eye pressure. (PMID:12646749)
- No glaucoma-specific mutations were found in the OPTN gene in Japanese glaucoma patients. However, some novel single-nucleotide polymorphisms (SNPs) in the exons and introns are reported in this paper for the first time. (PMID:12811537)
- The mutations in the optineurin gene associated with normal-tension glaucoma are not associated with adult-onset primary open-angle glaucoma (PMID:12912697)
- The association of OPTN missense mutation M98K with normal tension glaucoma but not high tension glaucoma suggests genetic heterogeneity between these two phenotypes. (PMID:12920093)
- OPTN gene is the causative gene for POAG (primary open-angle glaucoma) and suggest a different mutation pattern of OPTN in Chinese than in whites. (PMID:12939304)
- This study provides some additional evidence for the association of the Glu50Lys OPTN sequence variation with familial normal tension glaucoma. (PMID:14597044)
- The OPTN M98K amino acid substitution mutation is potentially the most important single genetic factor contributing to genetic predisposition to primary open angle glaucoma. (PMID:14627677)
- Identification of Optineurin as an adult-onset glaucoma gene and its known interaction with a group of proteins provides the first opportunity to study biochemical pathways that are thought to be involved in causation of this group of eye disorders. (PMID:14740994)
- The association of the allelic variation (Met98Lys) in the OPTN gene in Japanese patients suggest that they are involved in the pathogenesis of POAG primary open-angle glaucoma) and NTG. (PMID:15226658)
- Mutations in OPTN are not specifically associated with low-pressure glaucoma, but can play a role in juvenile open-angle glaucoma. (PMID:15326130)
- Polymorphismsin in optineurin gene is associayed with glaucoma disease progression (PMID:15370540)
- Cross-sectional analysis from baseline observations of the BMES suggested that the M98K risk-associated allele appeared at a higher prevalence in high-tension glaucoma compared with controls (PMID:15498064)
- OPTN gene is associated with primary open-angle glaucoma rather than normal-tension glaucoma in Japanese. Statistical analysis showed possible interaction between polymorphisms in OPTN and the TNF-alpha genes that would increase risk for glaucoma. (PMID:15557444)
- The findings in the current study provide further evidence that MYOC and OPTN gene variants are rare causes of NTG normal tension glaucoma). (PMID:15851979)
- In this study, subjects with glaucoma who had the OPTN E50K mutation were found to have NTG (normal tension glaucoma) that appeared to be more severe than that in a control group (PMID:16043855)
- mGLuR1a signaling is attenuated by the huntingtin-binding protein optineurin (PMID:16091361)
- Despite a putative mutation (Arg545Gln) in some patients, the present study does not suggest a significant involvement of OPTN in POAG patients of Indian origin. (PMID:16205626)
- Primary open-angle glaucoma (POAG) is genetically heterogeneous, with 6 named POAG loci GLC1A-F mapped and genes myocilin (MYOC) and optineurin (OPTN) identified at 2 of the loci. (PMID:16374045)
- In this population, mutations in the optineurin gene are not associated with adult-onset primary open-angle glaucoma. (PMID:16440206)
- The results of this study support the rare association of OPTN sequence variants with familial forms of LTG. (PMID:16988596)
- The Arg144Gln mutation in OLFM2 is a possible disease-causing mutation in Japanese patients with OAG. Common polymorphisms in OLFM2 and OPTN may interactively contribute to the development of OAG, indicating a polygenic etiology. (PMID:17122126)
- This study highlights a possible role of OPTN in vesicle trafficking and Golgi integrity. It also provides in-sights into the possible mechanisms why E50K would exhibit a propensity toward the development of glaucoma. (PMID:17148662)
- 3.59% of our primary open-angle glaucoma patients had mutations in the CYP1B1, MYOC, and OPTN genes; first report to document the involvement of the CYP1B1, MYOC, and OPTN genes in the etiology of POAG in the same set of Indian patients (PMID:17563717)
- In Spain, a minority of adult-onset ocular hypertension (OHT) primary open-angle glaucoma (POAG) patients carry heterozygous disease-causing mutations in the MYOC gene and OPTN is not involved in either OHT or POAG. (PMID:17615537)
- These results indicate that interaction exists between OPTN and MYOC genes. (PMID:17663725)
- Optineurin competitively antagonized NEMO’s binding to polyUb receptor-interacting protein, and its overexpression inhibited TNFalpha-induced NF-kappaB activation. (PMID:17702576)
- These data therefore show that (i) Rab11a regulates cell surface abundance of both GLUT4 and FAT/CD36. (PMID:17854769)
- Timolol can reduce MYOC RNA levels in HTM cultures from some individuals. Timolol does not alter OPTN or WDR36 levels or ameliorate MYOC induction by dexamethasone in vitro. (PMID:18195223)
- The OPTN[E50K] mutant associated with Primary Open Angle Glaucoma (POAG) displayed strikingly enhanced binding to TBK1, suggesting that this interaction may contribute to familial POAG caused by this mutation. (PMID:18307994)
- None of the mutations in OPTN are associated with juvenile-onset open-angle glaucoma. The variant M98K is not a risk factor and the variant c.-233+25C>G may be protective against glaucoma in Taiwanese. (PMID:18385781)
- TNF-alpha, an inflammatory cytokine, disrupts the localization of polycystin-2 to the plasma membrane and primary cilia through a scaffold protein, FIP2, which is induced by TNF-alpha (PMID:18552856)
- A novel mutation of OPTN gene with Lys322Glu change is responsible for the occurrence of primary open angle glaucoma in a Chinese family. (PMID:18683701)
- Coding variants in OPTN may not contribute to the risk for primary open-angle glaucoma in persons of West African descent. (PMID:19096531)
- Our data show no association between the five evaluated variants and POAG in the Brazilian population. (PMID:19172505)
- results suggest that there is a negative feedback loop in which TNFalpha-induced NF-kappaB activity mediates expression of optineurin, which itself functions as a negative regulator of NF-kappaB (PMID:19340308)
- A novel mutation of a Lys322Glu change in OPTN is responsible for the familial case of primary open-angle glaucoma observed in northeastern China. (PMID:19710941)
- The optineurin regulates endocytic trafficking of transferrin receptor to the juxtanuclear region. (PMID:20085643)
- Study provides new information regarding basic characteristics of optineurin that are important for future efforts in defining precisely how optineurin functions normally and how mutations may result in pathology. (PMID:20161783)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | optn | ENSDARG00000002663 |
| mus_musculus | Optn | ENSMUSG00000026672 |
| rattus_norvegicus | Optn | ENSRNOG00000017941 |
Paralogs (1): IKBKG (ENSG00000269335)
Protein
Protein identifiers
Optineurin — Q96CV9 (reviewed: Q96CV9)
Alternative names: E3-14.7K-interacting protein, Huntingtin yeast partner L, Huntingtin-interacting protein 7, Huntingtin-interacting protein L, NEMO-related protein, Optic neuropathy-inducing protein, Transcription factor IIIA-interacting protein
All UniProt accessions (5): A0A087WY28, A0A087X2G2, Q96CV9, H7C1H4, X6RKL2
UniProt curated annotations — full annotation on UniProt →
Function. Plays an important role in the maintenance of the Golgi complex, in membrane trafficking, in exocytosis, through its interaction with myosin VI and Rab8. Links myosin VI to the Golgi complex and plays an important role in Golgi ribbon formation. Plays a role in the activation of innate immune response during viral infection. Mechanistically, recruits TBK1 at the Golgi apparatus, promoting its trans-phosphorylation after RLR or TLR3 stimulation. In turn, activated TBK1 phosphorylates its downstream partner IRF3 to produce IFN-beta/IFNB1. Plays a neuroprotective role in the eye and optic nerve. May act by regulating membrane trafficking and cellular morphogenesis via a complex that contains Rab8 and huntingtin (HD). Mediates the interaction of Rab8 with the probable GTPase-activating protein TBC1D17 during Rab8-mediated endocytic trafficking, such as that of transferrin receptor (TFRC/TfR); regulates Rab8 recruitment to tubules emanating from the endocytic recycling compartment. Autophagy receptor that interacts directly with both the cargo to become degraded and an autophagy modifier of the MAP1 LC3 family; targets ubiquitin-coated bacteria (xenophagy), such as cytoplasmic Salmonella enterica, and appears to function in the same pathway as SQSTM1 and CALCOCO2/NDP52. (Microbial infection) May constitute a cellular target for various viruses, such as adenovirus E3 14.7 or Bluetongue virus, to inhibit innate immune response. During RNA virus infection, such as that of Sendai virus, negatively regulates the induction of IFNB1.
Subunit / interactions. Self-associates. Interacts with HD. Interacts with GTF3A. Interacts with MYO6. Interacts (via UBAN) with ubiquitinated TFRC. Interacts with GTP-bound Rab8 (RAB8A and/or RAB8B). Interacts with TBC1D17. Interacts with TBK1. Interacts with TRAF3. Binds to linear ubiquitin chains. Interacts with LC3 family members MAP1LC3A, MAP1LC3B, GABARAP, GABARAPL1 and GABARAPL2; OPTN phosphorylation increases the association (at least with MAP1LC3B). Interacts with RAB12; the interaction may be indirect. Interacts with TBK1; this interaction leads to the Golgi localization of TBK1 and its subsequent activation. Interacts with palmitoyltransferase ZDHHC17/HIP14; the interaction does not lead to palmitoylation of OPTN. Interacts with CYLD. Interacts with TOM1; the interaction is indirect and is mediated by MYO6, which acts as a bridge between TOM1 and OPTN. Interacts with USP12; the interaction is independent of USP12 deubiquitinase activity and may be involved in regulation of autophagic flux. (Microbial infection) Interacts with E3 14.7 kDa protein of group C human adenovirus. Interacts with Bluetongue virus protein NS3.
Subcellular location. Cytoplasm. Perinuclear region. Golgi apparatus. trans-Golgi network. Cytoplasmic vesicle. Autophagosome. Recycling endosome.
Tissue specificity. Present in aqueous humor of the eye (at protein level). Expressed in the trabecular meshwork (at protein level). Expressed in nonpigmented ciliary epithelium (at protein level). Expressed at high levels in skeletal muscle, also detected in heart, brain, pancreas, kidney, placenta and liver. Expressed in dermal fibroblasts (at protein level).
Post-translational modifications. Phosphorylated by TBK1, leading to restrict bacterial proliferation in case of infection. Phosphorylation is induced by phorbol esters and decreases its half-time.
Disease relevance. Glaucoma 1, open angle, E (GLC1E) [MIM:137760] A form of primary open angle glaucoma (POAG). POAG is characterized by a specific pattern of optic nerve and visual field defects. The angle of the anterior chamber of the eye is open, and usually the intraocular pressure is increased. However, glaucoma can occur at any intraocular pressure. The disease is generally asymptomatic until the late stages, by which time significant and irreversible optic nerve damage has already taken place. The disease is caused by variants affecting the gene represented in this entry. Glaucoma, normal pressure (NPG) [MIM:606657] A primary glaucoma characterized by intraocular pression consistently within the statistically normal population range. Disease susceptibility is associated with variants affecting the gene represented in this entry. Amyotrophic lateral sclerosis 12 with or without frontotemporal dementia (ALS12) [MIM:613435] A form of amyotrophic lateral sclerosis, a neurodegenerative disorder affecting upper motor neurons in the brain and lower motor neurons in the brain stem and spinal cord, resulting in fatal paralysis. Sensory abnormalities are absent. The pathologic hallmarks of the disease include pallor of the corticospinal tract due to loss of motor neurons, presence of ubiquitin-positive inclusions within surviving motor neurons, and deposition of pathologic aggregates. The etiology of amyotrophic lateral sclerosis is likely to be multifactorial, involving both genetic and environmental factors. The disease is inherited in 5-10% of the cases. ALS12 inheritance can be autosomal dominant or autosomal recessive. There is also sporadic occurrence. ALS12 patients may develop frontotemporal dementia. The disease is caused by variants affecting the gene represented in this entry.
Domain organisation. Ubiquitin-binding motif (UBAN), also called UBD, is essential for subcellular localization to recycling endosomes and for proper trafficking of transferrin to the juxtanuclear region. It is involved in interaction with ubiquitinated TFRC. The LIR (LC3-interacting region) motif mediates the interaction with ATG8 family proteins.
Induction. Up-regulated by TNF. Up-regulated by IFNG. TNF and IFNG act synergistically to stimulate OPTN expression. Induced by glucocorticoids, such as dexamethasone. In an in vitro experimental setting, in which donor eyes are subjected to increased perfusion pressure (10 to 30 mm Hg) in the anterior chamber, there is no up-regulation in the trabecular meshwork at the transcript level for periods ranging between 1 and 24 hours. However, exposure to continuous elevated pressure for several days shows an induction of OPTN expression, with a 56% increase after 7 days. (Microbial infection) Up-regulated in response to Sendai virus infection or double stranded RNA treatment (at protein level); the up-regulation is direct and not mediated through a response to type I interferons; this may negatively regulate the interferon response to RNA-activated antiviral signaling pathways.
Isoforms (3)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q96CV9-1 | 1 | yes |
| Q96CV9-2 | 2 | |
| Q96CV9-3 | 3 |
RefSeq proteins (4): NP_001008212, NP_001008213, NP_001008214, NP_068815 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR021063 | NEMO_N | Domain |
| IPR032419 | CC2-LZ_dom | Domain |
| IPR034735 | NEMO_ZF | Domain |
| IPR051301 | Optineurin/NFkB_EssMod | Family |
Pfam: PF11577, PF16516, PF18414
UniProt features (54 total): sequence variant 14, region of interest 7, mutagenesis site 6, binding site 4, modified residue 4, compositionally biased region 3, helix 3, coiled-coil region 2, short sequence motif 2, splice variant 2, turn 2, strand 2, chain 1, zinc finger region 1, sequence conflict 1
Structure
Experimental structures (PDB)
14 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 3VTV | X-RAY DIFFRACTION | 1.7 |
| 9B0B | X-RAY DIFFRACTION | 1.7 |
| 9B12 | X-RAY DIFFRACTION | 1.81 |
| 9M0O | X-RAY DIFFRACTION | 1.83 |
| 9IKQ | X-RAY DIFFRACTION | 1.93 |
| 7CZM | X-RAY DIFFRACTION | 2 |
| 5EOF | X-RAY DIFFRACTION | 2.05 |
| 9B0Z | X-RAY DIFFRACTION | 2.41 |
| 5EOA | X-RAY DIFFRACTION | 2.5 |
| 3VTW | X-RAY DIFFRACTION | 2.52 |
| 5B83 | X-RAY DIFFRACTION | 2.69 |
| 2LO4 | SOLUTION NMR | |
| 2LUE | SOLUTION NMR | |
| 5AAZ | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96CV9-F1 | 77.90 | 0.53 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (4): 555; 558; 571; 575
Post-translational modifications (4): 177, 198, 342, 526
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 50 | no effect on retinal ganglion cell death, decreased interaction with tfrc, loss of localization to recycling endosomes, |
| 178 | abolishes interaction with map1lc3a and gabarapl1, no effect on binding to linear ubiquitin. |
| 178 | increases interaction with map1lc3b. |
| 474–475 | abolishes colocalization with cytosolic salmonella. |
| 474 | no effect on retinal ganglion cell death, drastically decreased interaction with tfrc, loss of localization to recycling |
| 474 | significant reduction in ubiquitin binding, decreased interaction with tbk1, loss of localization to recycling endosomes |
Function
Pathways and Gene Ontology
Reactome pathways
10 pathways
| ID | Pathway |
|---|---|
| R-HSA-2565942 | Regulation of PLK1 Activity at G2/M Transition |
| R-HSA-5205685 | PINK1-PRKN Mediated Mitophagy |
| R-HSA-5357786 | TNFR1-induced proapoptotic signaling |
| R-HSA-5357905 | Regulation of TNFR1 signaling |
| R-HSA-5357956 | TNFR1-induced NF-kappa-B signaling pathway |
| R-HSA-8854214 | TBC/RABGAPs |
| R-HSA-9013973 | TICAM1-dependent activation of IRF3/IRF7 |
| R-HSA-936964 | Activation of IRF3, IRF7 mediated by TBK1, IKKε (IKBKE) |
| R-HSA-9824878 | Regulation of TBK1, IKKε (IKBKE)-mediated activation of IRF3, IRF7 |
| R-HSA-9828211 | Regulation of TBK1, IKKε-mediated activation of IRF3, IRF7 upon TLR3 ligation |
MSigDB gene sets: 470 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_UP, GSE18804_SPLEEN_MACROPHAGE_VS_TUMORAL_MACROPHAGE_UP, VERHAAK_AML_WITH_NPM1_MUTATED_DN, GOBP_REGULATION_OF_AUTOPHAGY, WALLACE_PROSTATE_CANCER_RACE_UP, REACTOME_INNATE_IMMUNE_SYSTEM, KAAB_FAILED_HEART_ATRIUM_DN, GOBP_CANONICAL_NF_KAPPAB_SIGNAL_TRANSDUCTION, GOBP_VESICLE_MEDIATED_TRANSPORT, REACTOME_MEMBRANE_TRAFFICKING, GOBP_XENOPHAGY, GOBP_PROTEIN_LOCALIZATION_TO_CELL_PERIPHERY, GOBP_CELLULAR_RESPONSE_TO_TOPOLOGICALLY_INCORRECT_PROTEIN, GOBP_MACROAUTOPHAGY, GOBP_NEGATIVE_REGULATION_OF_INTRACELLULAR_SIGNAL_TRANSDUCTION
GO Biological Process (18): negative regulation of receptor recycling (GO:0001920), Golgi organization (GO:0007030), signal transduction (GO:0007165), cell death (GO:0008219), positive regulation of autophagy (GO:0010508), protein localization to Golgi apparatus (GO:0034067), cellular response to unfolded protein (GO:0034620), Golgi to plasma membrane protein transport (GO:0043001), regulation of canonical NF-kappaB signal transduction (GO:0043122), negative regulation of canonical NF-kappaB signal transduction (GO:0043124), innate immune response (GO:0045087), defense response to Gram-negative bacterium (GO:0050829), type 2 mitophagy (GO:0061734), Golgi ribbon formation (GO:0090161), positive regulation of xenophagy (GO:1904417), immune system process (GO:0002376), autophagy (GO:0006914), intracellular protein localization (GO:0008104)
GO Molecular Function (7): zinc ion binding (GO:0008270), protein-macromolecule adaptor activity (GO:0030674), polyubiquitin modification-dependent protein binding (GO:0031593), identical protein binding (GO:0042802), K63-linked polyubiquitin modification-dependent protein binding (GO:0070530), protein binding (GO:0005515), metal ion binding (GO:0046872)
GO Cellular Component (13): Golgi membrane (GO:0000139), nucleus (GO:0005634), nucleoplasm (GO:0005654), cytoplasm (GO:0005737), autophagosome (GO:0005776), Golgi apparatus (GO:0005794), trans-Golgi network (GO:0005802), cytosol (GO:0005829), perinuclear region of cytoplasm (GO:0048471), recycling endosome membrane (GO:0055038), endosome (GO:0005768), cytoplasmic vesicle (GO:0031410), recycling endosome (GO:0055037)
Reactome top-level categories
Rollup of top-8 pathways:
| Category | Pathways |
|---|---|
| TNF signaling | 3 |
| G2/M Transition | 1 |
| Mitophagy | 1 |
| Rab regulation of trafficking | 1 |
| Toll Like Receptor 3 (TLR3) Cascade | 1 |
| TRIF (TICAM1)-mediated TLR4 signaling | 1 |
| Activation of IRF3, IRF7 mediated by TBK1, IKKε (IKBKE) | 1 |
| TICAM1-dependent activation of IRF3/IRF7 | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular anatomical structure | 4 |
| cytoplasm | 4 |
| cellular process | 2 |
| canonical NF-kappaB signal transduction | 2 |
| protein binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| endomembrane system | 2 |
| receptor recycling | 1 |
| regulation of receptor recycling | 1 |
| negative regulation of macromolecule metabolic process | 1 |
| negative regulation of signaling | 1 |
| organelle organization | 1 |
| endomembrane system organization | 1 |
| cell communication | 1 |
| signaling | 1 |
| regulation of cellular process | 1 |
| cellular response to stimulus | 1 |
| autophagy | 1 |
| positive regulation of catabolic process | 1 |
| regulation of autophagy | 1 |
| protein localization to organelle | 1 |
| response to unfolded protein | 1 |
| cellular response to topologically incorrect protein | 1 |
| Golgi to plasma membrane transport | 1 |
| protein transport | 1 |
| establishment of protein localization to plasma membrane | 1 |
| protein localization to plasma membrane | 1 |
| regulation of intracellular signal transduction | 1 |
| regulation of canonical NF-kappaB signal transduction | 1 |
| negative regulation of intracellular signal transduction | 1 |
| immune response | 1 |
| defense response to symbiont | 1 |
| defense response to bacterium | 1 |
| mitophagy | 1 |
| Golgi organization | 1 |
| positive regulation of macroautophagy | 1 |
| positive regulation of defense response | 1 |
| positive regulation of response to external stimulus | 1 |
| xenophagy | 1 |
| regulation of xenophagy | 1 |
Protein interactions and networks
STRING
2045 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| OPTN | TBK1 | Q9UHD2 | 994 |
| OPTN | SQSTM1 | Q13501 | 991 |
| OPTN | HTT | P42858 | 990 |
| OPTN | GABARAP | O95166 | 988 |
| OPTN | RAB8A | P24407 | 984 |
| OPTN | CALCOCO2 | Q13137 | 983 |
| OPTN | RAB11A | P24410 | 976 |
| OPTN | GABARAPL2 | P60520 | 975 |
| OPTN | F5GZY7 | F5GZY7 | 975 |
| OPTN | MYO5B | Q9ULV0 | 973 |
| OPTN | GTF3A | Q92664 | 962 |
| OPTN | TARDBP | Q13148 | 952 |
| OPTN | MYOC | Q99972 | 951 |
| OPTN | NBR1 | Q14596 | 947 |
| OPTN | TAX1BP1 | Q86VP1 | 942 |
IntAct
764 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TNIP1 | OPTN | psi-mi:“MI:0915”(physical association) | 0.970 |
| OPTN | TNIP1 | psi-mi:“MI:0915”(physical association) | 0.970 |
| OPTN | WASHC3 | psi-mi:“MI:0915”(physical association) | 0.950 |
| WASHC3 | OPTN | psi-mi:“MI:0915”(physical association) | 0.950 |
| OPTN | OPTN | psi-mi:“MI:0915”(physical association) | 0.930 |
| OPTN | OPTN | psi-mi:“MI:2364”(proximity) | 0.930 |
| OPTN | TBK1 | psi-mi:“MI:0915”(physical association) | 0.930 |
BioGRID (696): PARK2 (Co-localization), OPTN (Two-hybrid), OPTN (Two-hybrid), OPTN (Two-hybrid), OPTN (Two-hybrid), TNIP1 (Two-hybrid), RAB10 (Two-hybrid), CCDC53 (Two-hybrid), ZNF398 (Two-hybrid), TBC1D15 (Two-hybrid), ZNF329 (Two-hybrid), ZNF670 (Two-hybrid), OPTN (Two-hybrid), OPTN (Affinity Capture-Western), UBC (Reconstituted Complex)
ESM2 similar proteins: A0MZ66, A0MZ67, A6PWD2, A7MD70, B3DLE8, B9EKI3, F7DP49, O35550, O35551, O45420, P82094, Q05D60, Q08DR9, Q15276, Q28IH8, Q3KR99, Q3UIJ9, Q4L180, Q4R7H3, Q4V7C8, Q53EZ4, Q5BIX7, Q5R923, Q5RA03, Q5RI56, Q5U3Z6, Q6NRC9, Q6NRW2, Q6P0R8, Q6P402, Q6P6L0, Q7YS99, Q7Z7B0, Q861Q8, Q8BT07, Q8BVC4, Q8K2Q9, Q8K3K8, Q8K4T4, Q8R5M4
Diamond homologs: A9QT41, O88522, Q5M7B7, Q5R923, Q5RI56, Q6TMG5, Q7YS99, Q861Q8, Q8R5M4, Q90Z16, Q95KA2, Q95KU9, Q96CV9, Q9Y6K9, Q8K3K8
SIGNOR signaling
15 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| PLK1 | up-regulates | OPTN | phosphorylation |
| OPTN | “up-regulates activity” | TBK1 | binding |
| Cullin4-RBX1-DDB1 | “up-regulates activity” | OPTN | polyubiquitination |
| DCAF4 | “up-regulates activity” | OPTN | binding |
| TBK1 | “up-regulates activity” | OPTN | phosphorylation |
| HACE1 | “down-regulates quantity by destabilization” | OPTN | ubiquitination |
| OPTN | down-regulates | Apoptosis | |
| OPTN | up-regulates | Cell_growth | |
| OPTN | “up-regulates quantity by expression” | BDNF | “transcriptional regulation” |
| OPTN | “up-regulates quantity by expression” | NTF3 | “transcriptional regulation” |
| OPTN | “up-regulates quantity by expression” | SNAP25 | “transcriptional regulation” |
| OPTN | “up-regulates quantity by expression” | NEFL | “transcriptional regulation” |
| OPTN | up-regulates | Protein_aggregates |
Disease & clinical
Clinical variants and AI predictions
ClinVar
514 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 35 |
| Likely pathogenic | 25 |
| Uncertain significance | 243 |
| Likely benign | 125 |
| Benign | 36 |
Top pathogenic / likely-pathogenic (30)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1175766 | NM_001008212.2(OPTN):c.1320del (p.Lys440fs) | Pathogenic |
| 1297634 | NM_001008212.2(OPTN):c.1242+1G>A | Pathogenic |
| 1384838 | NC_000010.11:g.13122383AG[1] | Pathogenic |
| 1425874 | NC_000010.10:g.(?13151123)(13178866_?)del | Pathogenic |
| 1451918 | NM_001008212.2(OPTN):c.986_990del (p.Arg329fs) | Pathogenic |
| 1455344 | NM_001008212.2(OPTN):c.785C>A (p.Ser262Ter) | Pathogenic |
| 1459219 | NC_000010.10:g.(?13158247)(13158360_?)del | Pathogenic |
| 1459834 | NC_000010.10:g.(?13152254)(13161060_?)del | Pathogenic |
| 1775090 | NM_001008212.2(OPTN):c.1003C>T (p.Gln335Ter) | Pathogenic |
| 2042501 | NM_001008212.2(OPTN):c.1289_1290del (p.Leu430fs) | Pathogenic |
| 2090693 | NM_001008212.2(OPTN):c.666del (p.Lys223fs) | Pathogenic |
| 2126803 | NM_001008212.2(OPTN):c.649A>T (p.Arg217Ter) | Pathogenic |
| 2198963 | NM_001008212.2(OPTN):c.1552C>T (p.Gln518Ter) | Pathogenic |
| 2426699 | NC_000010.10:g.(?13151123)(13158360_?)del | Pathogenic |
| 2426700 | NC_000010.10:g.(?13154433)(13161060_?)del | Pathogenic |
| 2426701 | NC_000010.10:g.(?13164365)(13168059_?)del | Pathogenic |
| 2928942 | NM_001008212.2(OPTN):c.1318_1334dup (p.Asp445fs) | Pathogenic |
| 2931123 | NM_001008212.2(OPTN):c.523del (p.Glu175fs) | Pathogenic |
| 2936645 | NM_001008212.2(OPTN):c.1103del (p.Met368fs) | Pathogenic |
| 2938067 | NM_001008212.2(OPTN):c.450dup (p.Gln151fs) | Pathogenic |
| 2940980 | NM_001008212.2(OPTN):c.419_420insTC (p.Lys140fs) | Pathogenic |
| 3244820 | NC_000010.10:g.(?13164365)(13164507_?)del | Pathogenic |
| 3749506 | NM_001008212.2(OPTN):c.157C>T (p.Gln53Ter) | Pathogenic |
| 3751761 | NM_001008212.2(OPTN):c.1240G>T (p.Glu414Ter) | Pathogenic |
| 3757114 | NM_001008212.2(OPTN):c.1287del (p.Lys429fs) | Pathogenic |
| 4791885 | NM_001008212.2(OPTN):c.1202dup (p.Asn401fs) | Pathogenic |
| 576203 | NM_001008212.2(OPTN):c.158_161dup (p.Lys55fs) | Pathogenic |
| 583651 | NC_000010.11:g.(?13109123)(13183100_?)del | Pathogenic |
| 631627 | NM_001008212.2(OPTN):c.403G>T (p.Glu135Ter) | Pathogenic |
| 7096 | NM_001008212.2(OPTN):c.148G>A (p.Glu50Lys) | Pathogenic |
SpliceAI
2690 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 10:13109284:GAAAG:G | donor_gain | 1.0000 |
| 10:13109286:AAGG:A | donor_loss | 1.0000 |
| 10:13109287:AGG:A | donor_loss | 1.0000 |
| 10:13109288:GGTG:G | donor_loss | 1.0000 |
| 10:13109289:G:GA | donor_loss | 1.0000 |
| 10:13109289:G:GG | donor_gain | 1.0000 |
| 10:13109290:T:A | donor_loss | 1.0000 |
| 10:13112449:CCA:C | acceptor_loss | 1.0000 |
| 10:13112450:CAGG:C | acceptor_loss | 1.0000 |
| 10:13112451:A:AG | acceptor_gain | 1.0000 |
| 10:13112451:A:T | acceptor_loss | 1.0000 |
| 10:13112452:G:C | acceptor_loss | 1.0000 |
| 10:13112452:G:GG | acceptor_gain | 1.0000 |
| 10:13112606:G:GT | donor_gain | 1.0000 |
| 10:13112629:G:GT | donor_gain | 1.0000 |
| 10:13112631:TGGCT:T | donor_gain | 1.0000 |
| 10:13112632:GGCT:G | donor_gain | 1.0000 |
| 10:13112632:GGCTG:G | donor_gain | 1.0000 |
| 10:13112633:GCT:G | donor_gain | 1.0000 |
| 10:13112633:GCTG:G | donor_gain | 1.0000 |
| 10:13112634:CTGTG:C | donor_loss | 1.0000 |
| 10:13112635:TG:T | donor_loss | 1.0000 |
| 10:13112636:G:GG | donor_gain | 1.0000 |
| 10:13112636:GTGA:G | donor_loss | 1.0000 |
| 10:13112637:T:A | donor_loss | 1.0000 |
| 10:13112638:GAG:G | donor_loss | 1.0000 |
| 10:13112639:AGTTT:A | donor_loss | 1.0000 |
| 10:13112640:G:C | donor_loss | 1.0000 |
| 10:13116434:G:GT | donor_gain | 1.0000 |
| 10:13119036:GAAAG:G | donor_gain | 1.0000 |
AlphaMissense
0 scored. Top likely-pathogenic:
dbSNP variants (sampled 300 via entrez): RS1000046414 (10:13138716 G>A), RS1000114027 (10:13099974 C>T), RS1000187816 (10:13113277 C>G,T), RS1000219415 (10:13125667 T>A), RS1000251354 (10:13132386 A>G), RS1000353324 (10:13117863 G>A), RS1000451632 (10:13112339 C>A,T), RS1000478013 (10:13132136 C>G), RS1000719830 (10:13100805 C>G,T), RS1000752897 (10:13130138 C>T), RS1000815401 (10:13130303 T>C), RS1000822357 (10:13136890 A>T), RS1000942342 (10:13106912 T>A,C,G), RS1000994845 (10:13107124 C>A,T), RS1001003971 (10:13135713 C>A,T)
Disease associations
OMIM: gene MIM:602432 | disease phenotypes: MIM:613435, MIM:137760, MIM:612069, MIM:606657
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| amyotrophic lateral sclerosis type 12 | Definitive | Semidominant |
| glaucoma 1, open angle, E | Strong | Autosomal dominant |
| amyotrophic lateral sclerosis | Supportive | Autosomal dominant |
ClinGen Gene-Disease Validity (2)
Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.
| Disease | Classification | Inheritance |
|---|---|---|
| amyotrophic lateral sclerosis type 12 | Definitive | SD |
| glaucoma, normal tension, susceptibility to | Definitive | AD |
Mondo (8): amyotrophic lateral sclerosis type 12 (MONDO:0013264), OPTN-related open angle glaucoma (MONDO:0100553), amyotrophic lateral sclerosis (MONDO:0004976), frontotemporal dementia (MONDO:0017276), amyotrophic lateral sclerosis type 10 (MONDO:0012790), motor neuron disorder (MONDO:0020128), glaucoma, normal tension, susceptibility to (MONDO:0011693), (MONDO:0007665)
Orphanet (4): Amyotrophic lateral sclerosis (Orphanet:803), Frontotemporal dementia (Orphanet:282), Frontotemporal dementia with motor neuron disease (Orphanet:275872), Motor neuron disease (Orphanet:98503)
HPO phenotypes
58 total (30 of 58 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000217 | Xerostomia |
| HP:0000545 | Myopia |
| HP:0000708 | Atypical behavior |
| HP:0000712 | Emotional lability |
| HP:0000716 | Depression |
| HP:0000739 | Anxiety |
| HP:0001257 | Spasticity |
| HP:0001260 | Dysarthria |
| HP:0001308 | Tongue fasciculations |
| HP:0001324 | Muscle weakness |
| HP:0001347 | Hyperreflexia |
| HP:0001618 | Dysphonia |
| HP:0001824 | Weight loss |
| HP:0002015 | Dysphagia |
| HP:0002094 | Dyspnea |
| HP:0002145 | Frontotemporal dementia |
| HP:0002180 | Neurodegeneration |
| HP:0002307 | Drooling |
| HP:0002313 | Spastic paraparesis |
| HP:0002360 | Sleep disturbance |
| HP:0002380 | Fasciculations |
| HP:0002463 | Language impairment |
| HP:0002505 | Loss of ambulation |
| HP:0002878 | Respiratory failure |
| HP:0003202 | Skeletal muscle atrophy |
| HP:0003324 | Generalized muscle weakness |
| HP:0003376 | Steppage gait |
| HP:0003394 | Muscle spasm |
GWAS associations
4 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000672_2 | Paget’s disease | 6.000000e-13 |
| GCST001086_1 | Paget’s disease | 4.000000e-38 |
| GCST006998_5 | Cerebrospinal fluid p-tau levels in mild cognitive impairment | 5.000000e-08 |
| GCST007008_4 | Cerebrospinal fluid p-tau levels | 4.000000e-06 |
EFO canonical traits (2, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0004760 | t-tau measurement |
| EFO:0004763 | p-tau measurement |
MeSH disease descriptors (4)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D000690 | Amyotrophic Lateral Sclerosis | C10.228.854.139; C10.574.562.250; C10.574.950.050; C10.668.467.250; C18.452.845.800.050 |
| D057180 | Frontotemporal Dementia | C10.228.140.380.266.299; C10.574.950.300.299; C18.452.845.800.300.299; F03.615.400.380.299 |
| D016472 | Motor Neuron Disease | C10.574.562; C10.668.467 |
| C567429 | Amyotrophic Lateral Sclerosis 10 (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
70 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 6 |
| sodium arsenite | affects expression, increases expression | 3 |
| Benzo(a)pyrene | decreases methylation, increases expression, affects methylation | 3 |
| Cisplatin | affects reaction, decreases expression, affects response to substance, affects expression | 3 |
| Fluorouracil | increases expression, affects response to substance | 3 |
| Tetrachlorodibenzodioxin | increases expression | 3 |
| cobaltous chloride | increases expression | 2 |
| Air Pollutants | decreases expression, increases abundance, increases expression | 2 |
| Tretinoin | increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| Particulate Matter | decreases expression, increases abundance, increases expression | 2 |
| GSK-J4 | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| methylselenic acid | increases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects localization, decreases expression, affects cotreatment, increases expression | 1 |
| beta-lapachone | increases expression | 1 |
| methylparaben | increases expression | 1 |
| nickel chloride | increases expression | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, decreases expression | 1 |
| 4-aminophenylarsenoxide | affects binding, decreases reaction | 1 |
| ciglitazone | affects binding, increases expression | 1 |
| entinostat | increases expression | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| K 7174 | increases expression | 1 |
| ICG 001 | increases expression | 1 |
| abrine | increases expression | 1 |
| 2-(1H-indazol-4-yl)-6-(4-methanesulfonylpiperazin-1-ylmethyl)-4-morpholin-4-ylthieno(3,2-d)pyrimidine | increases expression, increases response to substance | 1 |
| NSC 689534 | affects binding, increases expression | 1 |
Cellosaurus cell lines
16 cell lines: 12 cancer cell line, 2 induced pluripotent stem cell, 1 transformed cell line, 1 embryonic stem cell
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_A1VD | ICC13-7 | Cancer cell line | Female |
| CVCL_A6LN | U2OS OPTN KO | Cancer cell line | Female |
| CVCL_C0KI | AIW002-02/OPTN-KO | Induced pluripotent stem cell | Male |
| CVCL_C2VN | HeLa S3 penta KO | Cancer cell line | Female |
| CVCL_C2VP | HeLa S3 penta KO-ATG13 KO | Cancer cell line | Female |
| CVCL_C2VQ | HeLa S3 penta KO-ATG14 KO | Cancer cell line | Female |
| CVCL_C2VR | HeLa S3 penta KO-TBK1 KO | Cancer cell line | Female |
| CVCL_C2VS | HeLa S3 penta KO-ULK1/ULK2 DKO | Cancer cell line | Female |
| CVCL_C2VT | HeLa S3 penta KO-TBK1/ULK1/ULK2 TKO | Cancer cell line | Female |
| CVCL_C8QB | HeLa S3 penta KO-AZI2/TBKBP1 DKO clone 20 | Cancer cell line | Female |
Clinical trials (associated diseases)
300 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00542412 | PHASE4 | COMPLETED | CARE Canadian ALS Riluzole Evaluation |
| NCT00560287 | PHASE4 | UNKNOWN | Non-Invasive Ventilation in Amyotrophic Lateral Sclerosis |
| NCT00613899 | PHASE4 | COMPLETED | Feasibility of Telesurveillance and Home Cough Assistance for Amyotrophic Lateral Patients (ALS) |
| NCT04997954 | PHASE4 | UNKNOWN | EMERALD TRIAL Open Label Extension Study |
| NCT06849115 | PHASE4 | COMPLETED | Effects of L-Carnitine in Amyotrophic Lateral Sclerosis Patients With CHCHD10 Mutations |
| NCT07223723 | PHASE4 | RECRUITING | A Study to Learn More About the Long-Term Safety of Tofersen (Qalsody) in Chinese Participants With SOD-1 Amyotrophic Lateral Sclerosis (ALS) |
| NCT00021697 | PHASE3 | COMPLETED | Safety/Efficacy of AVP-923 in the Treatment of Emotional Lability (Uncontrolled Crying & Laughing) in Patients With ALS |
| NCT00035815 | PHASE3 | COMPLETED | Insulin-like Growth Factor-1 in Amyotrophic Lateral Sclerosis (ALS) Trial |
| NCT00047723 | PHASE3 | COMPLETED | Minocycline to Treat Amyotrophic Lateral Sclerosis |
| NCT00069186 | PHASE3 | UNKNOWN | Study of Creatine Monohydrate in Patients With Amyotrophic Lateral Sclerosis |
| NCT00136110 | PHASE3 | COMPLETED | Trial of Sodium Valproate in Amyotrophic Lateral Sclerosis |
| NCT00330681 | PHASE3 | COMPLETED | Efficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS) |
| NCT00349622 | PHASE3 | COMPLETED | Clinical Trial Ceftriaxone in Subjects With ALS |
| NCT00372879 | PHASE3 | COMPLETED | Clinical Trial of Vitamin E to Treat Muscular Cramps in Patients With ALS |
| NCT00415519 | PHASE3 | COMPLETED | Efficacy and Safety Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis (ALS) Who Met Severity Classification III |
| NCT00424463 | PHASE3 | COMPLETED | Expanded Controlled Study of Safety and Efficacy of MCI-186 in Patients With Amyotrophic Lateral Sclerosis (ALS) |
| NCT00839033 | PHASE3 | TERMINATED | Evaluation of a Mechanical Device During Acute Respiratory Failure in Patients With Neuromuscular Disorders |
| NCT00868166 | PHASE3 | COMPLETED | Safety and Efficacy of TRO19622 as add-on Therapy to Riluzole Versus Placebo in Treatment of Patients Suffering From ALS |
| NCT00965497 | PHASE3 | COMPLETED | Escitalopram (Lexapro) for Depression MS or ALS |
| NCT01016522 | PHASE3 | TERMINATED | Safety and Tolerability of the Ketogenic Diet in Amyotrophic Lateral Sclerosis (ALS) |
| NCT01160263 | PHASE3 | COMPLETED | Study of Dopamine and Serotonin Transporters in Patients With Amyotrophic Lateral Sclerosis and Controls |
| NCT01281189 | PHASE3 | COMPLETED | Phase 3 Study of Dexpramipexole in ALS |
| NCT01492686 | PHASE3 | COMPLETED | Phase 3 Study of MCI-186 for Treatment of Amyotrophic Lateral Sclerosis |
| NCT01583088 | PHASE3 | TERMINATED | Early Stage Amyotrophic Lateral Sclerosis Phrenic Stimulation |
| NCT01622088 | PHASE3 | TERMINATED | Phase 3 Extension Study of Dexpramipexole in ALS |
| NCT02496767 | PHASE3 | COMPLETED | Ventilatory Investigation of Tirasemtiv and Assessment of Longitudinal Indices After Treatment for a Year |
| NCT02623699 | PHASE3 | COMPLETED | An Efficacy, Safety, Tolerability, Pharmacokinetics and Pharmacodynamics Study of BIIB067 (Tofersen) in Adults With Inherited Amyotrophic Lateral Sclerosis (ALS) |
| NCT02936635 | PHASE3 | COMPLETED | A Study for Patients Who Completed VITALITY-ALS (CY 4031) |
| NCT03127267 | PHASE3 | RECRUITING | Efficacy and Safety of Masitinib Versus Placebo in the Treatment of ALS Patients |
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Related Atlas pages
- Associated diseases: OPTN-related open angle glaucoma, amyotrophic lateral sclerosis type 12, amyotrophic lateral sclerosis, glaucoma, normal tension, susceptibility to
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): amyotrophic lateral sclerosis, amyotrophic lateral sclerosis type 10, amyotrophic lateral sclerosis type 12, bone Paget disease, frontotemporal dementia, glaucoma, normal tension, susceptibility to, motor neuron disorder, OPTN-related open angle glaucoma