ORAI2
gene geneOn this page
Also known as CBCIP2FLJ12474FLJ14733H_NH0514P08.8
Summary
ORAI2 (ORAI calcium release-activated calcium modulator 2, HGNC:21667) is a protein-coding gene on chromosome 7q22.1, encoding Protein orai-2 (Q96SN7). Pore-forming subunit of inward rectifying Ca(2+) release-activated Ca(2+) (CRAC) channels.
Enables store-operated calcium channel activity. Involved in store-operated calcium entry. Located in plasma membrane.
Source: NCBI Gene 80228 — RefSeq curated summary.
At a glance
- GWAS associations: 3
- Clinical variants (ClinVar): 57 total — 1 pathogenic
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_001126340
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:21667 |
| Approved symbol | ORAI2 |
| Name | ORAI calcium release-activated calcium modulator 2 |
| Location | 7q22.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | CBCIP2, FLJ12474, FLJ14733, H_NH0514P08.8 |
| Ensembl gene | ENSG00000160991 |
| Ensembl biotype | protein_coding |
| OMIM | 610929 |
| Entrez | 80228 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 9 protein_coding, 1 protein_coding_CDS_not_defined
ENST00000356387, ENST00000403646, ENST00000473939, ENST00000478730, ENST00000482237, ENST00000488996, ENST00000495936, ENST00000498661, ENST00000611770, ENST00000952428
RefSeq mRNA: 4 — MANE Select: NM_001126340
NM_001126340, NM_001271818, NM_001271819, NM_032831
CCDS: CCDS5722
Canonical transcript exons
ENST00000495936 — 4 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001408887 | 102438944 | 102439181 |
| ENSE00001409383 | 102436225 | 102436333 |
| ENSE00001902201 | 102446513 | 102456825 |
| ENSE00001930645 | 102433575 | 102433661 |
Expression profiles
Bgee: expression breadth ubiquitous, 264 present calls, max score 97.91.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 10.1658 / max 252.8718, expressed in 1742 samples.
FANTOM5 promoters (1 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 80255 | 10.1658 | 1742 |
Top tissues by expression
287 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| renal medulla | UBERON:0000362 | 97.91 | gold quality |
| ventral tegmental area | UBERON:0002691 | 97.18 | gold quality |
| pylorus | UBERON:0001166 | 96.92 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 96.53 | gold quality |
| nipple | UBERON:0002030 | 96.30 | gold quality |
| inferior vagus X ganglion | UBERON:0005363 | 96.09 | gold quality |
| superior surface of tongue | UBERON:0007371 | 95.88 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 95.55 | gold quality |
| pericardium | UBERON:0002407 | 95.18 | gold quality |
| subthalamic nucleus | UBERON:0001906 | 95.09 | gold quality |
| cardia of stomach | UBERON:0001162 | 94.94 | gold quality |
| buccal mucosa cell | CL:0002336 | 94.55 | gold quality |
| endothelial cell | CL:0000115 | 93.91 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 93.28 | gold quality |
| stromal cell of endometrium | CL:0002255 | 93.09 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 92.99 | gold quality |
| blood | UBERON:0000178 | 92.91 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 92.79 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 92.63 | gold quality |
| saphenous vein | UBERON:0007318 | 92.59 | gold quality |
| pons | UBERON:0000988 | 92.50 | gold quality |
| pharyngeal mucosa | UBERON:0000355 | 92.49 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 92.31 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 92.19 | gold quality |
| caecum | UBERON:0001153 | 90.91 | gold quality |
| medulla oblongata | UBERON:0001896 | 90.83 | gold quality |
| skin of hip | UBERON:0001554 | 90.69 | gold quality |
| sperm | CL:0000019 | 89.98 | gold quality |
| urethra | UBERON:0000057 | 89.74 | gold quality |
| tongue | UBERON:0001723 | 89.57 | gold quality |
Single-cell (SCXA)
Detected in 2 experiment(s), a significant marker in 1.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | yes | 10.73 |
| E-MTAB-7381 | no | 180.82 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
326 targeting ORAI2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4283 | 100.00 | 66.42 | 2097 |
| HSA-MIR-3613-3P | 100.00 | 76.36 | 7965 |
| HSA-MIR-4673 | 100.00 | 66.64 | 1490 |
| HSA-MIR-1184 | 99.99 | 68.19 | 1458 |
| HSA-MIR-150-5P | 99.99 | 66.69 | 1976 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-4531 | 99.99 | 69.70 | 3181 |
| HSA-MIR-371B-5P | 99.99 | 75.34 | 4759 |
| HSA-MIR-548C-3P | 99.99 | 74.01 | 7587 |
| HSA-MIR-373-5P | 99.98 | 75.36 | 4753 |
| HSA-MIR-616-5P | 99.98 | 75.58 | 4775 |
| HSA-MIR-4645-5P | 99.98 | 65.81 | 1284 |
| HSA-MIR-103A-3P | 99.98 | 69.14 | 1595 |
| HSA-MIR-107 | 99.98 | 69.14 | 1595 |
| HSA-MIR-6778-3P | 99.96 | 67.29 | 2693 |
| HSA-MIR-4487 | 99.96 | 64.58 | 1252 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-4267 | 99.96 | 66.53 | 2368 |
| HSA-MIR-2110 | 99.96 | 66.68 | 1930 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-185-3P | 99.95 | 67.01 | 1743 |
| HSA-MIR-651-3P | 99.94 | 73.48 | 5177 |
| HSA-MIR-9983-3P | 99.94 | 71.48 | 3631 |
| HSA-MIR-6721-5P | 99.93 | 68.92 | 2981 |
| HSA-MIR-6499-3P | 99.90 | 66.38 | 1212 |
| HSA-MIR-4753-3P | 99.90 | 71.03 | 3786 |
| HSA-MIR-3529-3P | 99.90 | 73.55 | 3045 |
| HSA-MIR-4731-5P | 99.89 | 67.23 | 2537 |
| HSA-MIR-7162-3P | 99.89 | 68.16 | 1682 |
Literature-anchored findings (GeneRIF, showing 18)
- Results suggest that Orai1, -2, and -3 channels are similarly inhibited by extracellular calcium, indicating similar affinities for Ca(2+) within the selectivity filter. (PMID:17452328)
- The effects of 2-aminoethoxydiphenyl borate on orai1, orai2, orai3 metabolism in HEK293 cells with and without STIM1 are reported. (PMID:18403424)
- analysis of activation of Orai1-3 channels by a STIM1 coiled-coil mutant (PMID:19506081)
- Data show that the fast Ca(2+)-dependent inactivation is mediated by three conserved glutamates in the C termini (CT) of Orai2 and Orai3, which show prominent fast Ca(2+)-dependent inactivation compared with Orai1. (PMID:19706554)
- With these data we show a new Ca(2)(+) entry pathway linked to the Ca(2)(+)/inositolphosphate second-messenger system in RPE cells which help to further understand regulatory pathways of agonists. (PMID:20607548)
- Orai1 and Orai2 operate in a STIM-dependent manner, Orai3 does not interact with STIM isoforms upon calcium store depletion in platelets. (PMID:22640869)
- Orai1 but not Orai2 plays a major role in the influx of extracellular Ca2+ into and mediator release from HLMCs following their activation (PMID:24040356)
- The higher amplitude of store-operated Ca2+ entry was associated to the over-expression for Stim2, Orai2-3, and TRPC1 while Stim2 levels remained constant and Stim1, Orai1, Orai3, TRPC1 and TRPC4 proteins were over-expressed in primary myelofibrosis. (PMID:24603752)
- Orai1, Orai2 and STIM1 form functional Ca(2+) release-activated Ca(2+) channels in OUMS-27 cells (chondrocytes) and that these complexes are responsible for sustained Ca(2+) entry in response to agonist stimulation. (PMID:25769459)
- results identified the ORAI-NOX2 feedback loop as a determinant of monocyte immune responses. (PMID:26956485)
- findings provide evidence for a role for Orai1 and Orai2, in SOCE and migration in the human HL60 promyeloblastic cell line (PMID:27865925)
- ORAI1-3, are preferentially expressed in proximal tubular epithelial cells and downregulated in patients with diabetic nephropathy. (PMID:29203863)
- Higher expression of Orai2 was independently associated with a worse prognosis of patients with the classical and mesenchymal subtypes of glioblastoma.A strong association between Orai2 expression and apoptosis, stemness, and an epithelial-mesenchymal transition in the glioblastoma. (PMID:31772693)
- ORAI2 Down-Regulation Potentiates SOCE and Decreases Abeta42 Accumulation in Human Neuroglioma Cells. (PMID:32722509)
- Orai-1 and Orai-2 regulate oral cancer cell migration and colonisation by suppressing Akt/mTOR/NF-kappaB signalling. (PMID:32882268)
- Distinct pharmacological profiles of ORAI1, ORAI2, and ORAI3 channels. (PMID:32896813)
- ORAI2 Promotes Gastric Cancer Tumorigenicity and Metastasis through PI3K/Akt Signaling and MAPK-Dependent Focal Adhesion Disassembly. (PMID:33310726)
- Atlas of RNA editing events affecting protein expression in aged and Alzheimer’s disease human brain tissue. (PMID:34857756)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | orai2 | ENSDARG00000035148 |
| mus_musculus | Orai2 | ENSMUSG00000039747 |
| rattus_norvegicus | Orai2 | ENSRNOG00000001427 |
| drosophila_melanogaster | Orai | FBGN0041585 |
| caenorhabditis_elegans | WBGENE00015648 |
Paralogs (2): ORAI3 (ENSG00000175938), ORAI1 (ENSG00000276045)
Protein
Protein identifiers
Protein orai-2 — Q96SN7 (reviewed: Q96SN7)
Alternative names: CAP-binding protein complex-interacting protein 2, Transmembrane protein 142B
All UniProt accessions (4): Q96SN7, C9J5L2, C9JQR7, C9JUY6
UniProt curated annotations — full annotation on UniProt →
Function. Pore-forming subunit of inward rectifying Ca(2+) release-activated Ca(2+) (CRAC) channels. Assembles with ORAI1 and ORAI3 to form hexameric CRAC channels that mediate Ca(2+) influx upon depletion of endoplasmic reticulum Ca(2+) store and channel activation by Ca(2+) sensor STIM1, a process known as store-operated Ca(2+) entry (SOCE). Various pore subunit combinations may account for distinct CRAC channel spatiotemporal and cell-type specific dynamics. ORAI1 mainly contributes to the generation of Ca(2+) plateaus involved in sustained Ca(2+) entry and is dispensable for cytosolic Ca(2+) oscillations, whereas ORAI2 and ORAI3 generate oscillatory patterns. CRAC channels assemble in Ca(2+) signaling microdomains where Ca(2+) influx is coupled to calmodulin and calcineurin signaling and activation of NFAT transcription factors recruited to ORAI1 via AKAP5. CRAC channels are the main pathway for Ca(2+) influx in T cells and promote the immune response to pathogens by activating NFAT-dependent cytokine and chemokine transcription.
Subunit / interactions. Oligomerizes in homomeric and heteromeric ORAI complexes. Native CRAC channels most likely consist of hexameric ORAI heteromers, implying that diverse ORAI1, ORAI2 and ORAI3 subunit combinations with distinct biophysical properties can operate in a cell-type specific way. Interacts with STIM1; this regulates channel activity. Interacts with CRACR2A/EFCAB4B.
Subcellular location. Cell membrane.
Activity regulation. CRAC channels are regulated by fast Ca(2+)-dependent inactivation (FCDI), a mechanism that limits Ca(2+) influx and cell toxicity. ORAI2 channels display prominent FCDI. Inhibited by lanthanides such as Gd(3+) ions.
Similarity. Belongs to the Orai family.
RefSeq proteins (4): NP_001119812, NP_001258747, NP_001258748, NP_116220 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR012446 | CRAC_channel | Family |
| IPR038350 | Orai_sf | Homologous_superfamily |
Pfam: PF07856
Catalyzed reactions (Rhea), 1 shown:
- Ca(2+)(in) = Ca(2+)(out) (RHEA:29671)
UniProt features (11 total): transmembrane region 4, mutagenesis site 4, chain 1, site 1, sequence variant 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q96SN7-F1 | 80.59 | 0.33 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (1): 80 (confers selective permeability to ca(2+) ions)
Mutagenesis-validated functional residues (4):
| Position | Phenotype |
|---|---|
| 236 | reduces fast ca(2+)-dependent inactivation; when associated with a-233 and a-235. |
| 80 | has dominant negative effect. impairs store-operated ca(2+) influx. decreases regenerative ca(2+) oscillations. |
| 233 | reduces fast ca(2+)-dependent inactivation; when associated with a-235 and a-236. |
| 235 | reduces fast ca(2+)-dependent inactivation; when associated with a-233 and a-236. |
Function
Pathways and Gene Ontology
Reactome pathways
3 pathways
| ID | Pathway |
|---|---|
| R-HSA-139853 | Elevation of cytosolic Ca2+ levels |
| R-HSA-5578775 | Ion homeostasis |
| R-HSA-983695 | Antigen activates B Cell Receptor (BCR) leading to generation of second messengers |
MSigDB gene sets: 229 (showing top):
REACTOME_ADAPTIVE_IMMUNE_SYSTEM, GOBP_MONOATOMIC_CATION_TRANSPORT, FOSTER_TOLERANT_MACROPHAGE_DN, USF_01, KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN, LIAO_METASTASIS, RYTTCCTG_ETS2_B, GOBP_CALCIUM_ION_TRANSMEMBRANE_TRANSPORT, GOBP_TRANSMEMBRANE_TRANSPORT, SCHLOSSER_SERUM_RESPONSE_UP, SENESE_HDAC3_TARGETS_DN, TGGAAA_NFAT_Q4_01, MARSON_BOUND_BY_FOXP3_STIMULATED, MARSON_BOUND_BY_FOXP3_UNSTIMULATED, GOMF_METAL_ION_TRANSMEMBRANE_TRANSPORTER_ACTIVITY
GO Biological Process (5): store-operated calcium entry (GO:0002115), monoatomic ion transport (GO:0006811), calcium ion transport (GO:0006816), monoatomic ion transmembrane transport (GO:0034220), calcium ion transmembrane transport (GO:0070588)
GO Molecular Function (3): store-operated calcium channel activity (GO:0015279), calcium channel activity (GO:0005262), protein binding (GO:0005515)
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-3 pathways:
| Category | Pathways |
|---|---|
| Platelet calcium homeostasis | 1 |
| Cardiac conduction | 1 |
| Signaling by the B Cell Receptor (BCR) | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| calcium ion transport | 2 |
| transport | 1 |
| metal ion transport | 1 |
| monoatomic ion transport | 1 |
| transmembrane transport | 1 |
| monoatomic cation transmembrane transport | 1 |
| calcium channel activity | 1 |
| monoatomic cation channel activity | 1 |
| calcium ion transmembrane transporter activity | 1 |
| binding | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
444 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ORAI2 | STIM1 | Q13586 | 999 |
| ORAI2 | STIM2 | Q9P246 | 999 |
| ORAI2 | TRPC6 | Q9Y210 | 983 |
| ORAI2 | ORAI3 | Q9BRQ5 | 981 |
| ORAI2 | TRPC1 | P48995 | 963 |
| ORAI2 | ORAI1 | Q96D31 | 947 |
| ORAI2 | TRPC3 | Q13507 | 872 |
| ORAI2 | TRPC4 | Q9UBN4 | 825 |
| ORAI2 | TRPC5 | Q9UL62 | 782 |
| ORAI2 | TRPM2 | O94759 | 663 |
| ORAI2 | CACNA1C | Q13936 | 649 |
| ORAI2 | ITPR3 | Q14573 | 645 |
| ORAI2 | ITPR1 | Q14643 | 644 |
| ORAI2 | FKBP1A | P20071 | 564 |
| ORAI2 | SARAF | Q96BY9 | 552 |
IntAct
11 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| TRPC3 | ORAI2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| STIM1 | ORAI2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| CRACR2A | ORAI2 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SLC19A2 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| ORAI2 | psi-mi:“MI:0915”(physical association) | 0.000 | |
| COPS6 | ORAI2 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ORAI2 | GDF9 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ORAI2 | SETDB1 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ORAI2 | UNC119 | psi-mi:“MI:0915”(physical association) | 0.000 |
| ORAI2 | MED31 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (7): ORAI2 (Affinity Capture-RNA), MED31 (Two-hybrid), COPS6 (Two-hybrid), GDF9 (Two-hybrid), SETDB1 (Two-hybrid), UNC119 (Two-hybrid), ORAI2 (Affinity Capture-MS)
ESM2 similar proteins: A4FUY9, A5PN43, A7MBC7, D3ZWZ9, F4JTN2, O14524, P51811, Q0VGV9, Q32PG7, Q3SYY9, Q3ZBX1, Q49LS5, Q4V8X0, Q5EAU0, Q5F3F5, Q5GH61, Q5PQQ4, Q5PR61, Q5RDB4, Q5ZI05, Q5ZKY0, Q5ZLW2, Q68DH5, Q6AXF6, Q6AY05, Q6AZ61, Q6DFQ7, Q6NZI6, Q6P4P2, Q6Q3F5, Q7SYC7, Q7SYR6, Q7ZYA0, Q80UF9, Q8BH10, Q8BUV8, Q8C561, Q8K0B2, Q8R000, Q8TCT6
Diamond homologs: Q09232, Q5EAU0, Q5M848, Q5ZL05, Q5ZLW2, Q616J1, Q6AXR8, Q6NZI6, Q6P8G8, Q6TLE6, Q8BH10, Q8BWG9, Q96D31, Q96SN7, Q9BRQ5, Q9U6B8
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
57 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 0 |
| Uncertain significance | 35 |
| Likely benign | 1 |
| Benign | 1 |
Top pathogenic / likely-pathogenic (1)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1527380 | GRCh37/hg19 7q22.1-31.31(chr7:100676872-119156160) | Pathogenic |
SpliceAI
1023 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 7:102438942:A:AG | acceptor_gain | 1.0000 |
| 7:102438942:AGCCT:A | acceptor_gain | 1.0000 |
| 7:102438943:G:GG | acceptor_gain | 1.0000 |
| 7:102438943:GCCT:G | acceptor_gain | 1.0000 |
| 7:102438943:GCCTG:G | acceptor_gain | 1.0000 |
| 7:102433659:CCGG:C | donor_loss | 0.9900 |
| 7:102433660:CGG:C | donor_loss | 0.9900 |
| 7:102433661:GGTG:G | donor_loss | 0.9900 |
| 7:102433662:G:GG | donor_gain | 0.9900 |
| 7:102433662:GTGA:G | donor_loss | 0.9900 |
| 7:102433663:T:A | donor_loss | 0.9900 |
| 7:102438938:CCTTA:C | acceptor_loss | 0.9900 |
| 7:102438939:CTTA:C | acceptor_loss | 0.9900 |
| 7:102438940:TTA:T | acceptor_loss | 0.9900 |
| 7:102438941:TA:T | acceptor_loss | 0.9900 |
| 7:102438942:A:C | acceptor_loss | 0.9900 |
| 7:102438943:G:A | acceptor_loss | 0.9900 |
| 7:102438943:GC:G | acceptor_gain | 0.9900 |
| 7:102438943:GCC:G | acceptor_gain | 0.9900 |
| 7:102439178:CATGG:C | donor_loss | 0.9900 |
| 7:102439179:ATGGT:A | donor_loss | 0.9900 |
| 7:102439182:G:A | donor_loss | 0.9900 |
| 7:102439182:G:GG | donor_gain | 0.9900 |
| 7:102439183:T:TC | donor_loss | 0.9900 |
| 7:102439184:G:GG | donor_loss | 0.9900 |
| 7:102441786:C:G | donor_gain | 0.9900 |
| 7:102446509:GCA:G | acceptor_loss | 0.9900 |
| 7:102446510:CAGG:C | acceptor_loss | 0.9900 |
| 7:102446511:A:AG | acceptor_gain | 0.9900 |
| 7:102446511:AGGT:A | acceptor_gain | 0.9900 |
AlphaMissense
1476 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 7:102439114:T:C | L53P | 1.000 |
| 7:102439120:T:C | L55P | 1.000 |
| 7:102439126:G:T | R57M | 1.000 |
| 7:102439133:G:C | K59N | 1.000 |
| 7:102439133:G:T | K59N | 1.000 |
| 7:102439135:T:A | L60Q | 1.000 |
| 7:102439135:T:C | L60P | 1.000 |
| 7:102439139:G:C | K61N | 1.000 |
| 7:102439139:G:T | K61N | 1.000 |
| 7:102439156:C:A | S67Y | 1.000 |
| 7:102439156:C:T | S67F | 1.000 |
| 7:102439162:T:A | L69H | 1.000 |
| 7:102439162:T:C | L69P | 1.000 |
| 7:102439165:T:A | L70H | 1.000 |
| 7:102439170:G:C | G72R | 1.000 |
| 7:102439171:G:A | G72D | 1.000 |
| 7:102439173:T:C | F73L | 1.000 |
| 7:102439174:T:C | F73S | 1.000 |
| 7:102439174:T:G | F73C | 1.000 |
| 7:102439175:T:A | F73L | 1.000 |
| 7:102439175:T:G | F73L | 1.000 |
| 7:102439177:C:A | A74D | 1.000 |
| 7:102439180:T:A | M75K | 1.000 |
| 7:102446613:T:C | L109P | 1.000 |
| 7:102446622:T:C | L112P | 1.000 |
| 7:102446630:A:C | S115R | 1.000 |
| 7:102446632:C:A | S115R | 1.000 |
| 7:102446632:C:G | S115R | 1.000 |
| 7:102446643:T:C | L119P | 1.000 |
| 7:102446735:T:A | W150R | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000151807 (7:102443380 G>A), RS1000233651 (7:102454668 C>G), RS1000248964 (7:102431995 G>T), RS1000357573 (7:102438399 T>G), RS1000447728 (7:102433208 C>G,T), RS1000796038 (7:102442731 C>T), RS1000827714 (7:102436913 G>A,T), RS1000828595 (7:102443389 C>T), RS1000835520 (7:102455848 C>G), RS1000893368 (7:102438220 C>T), RS1001015821 (7:102447849 G>A,T), RS1001094471 (7:102437102 T>C), RS1001115298 (7:102453231 C>T), RS1001192508 (7:102434177 C>G,T), RS1001251205 (7:102433873 C>A)
Disease associations
OMIM: gene MIM:610929 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
3 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST003837_4 | Chronotype | 8.000000e-15 |
| GCST003838_4 | Morning vs. evening chronotype | 7.000000e-07 |
| GCST007576_427 | Chronotype | 1.000000e-12 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0008328 | chronotype measurement |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL3038476 (PROTEIN FAMILY), CHEMBL4888450 (PROTEIN COMPLEX)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 257 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL4753998 | ZEGOCRACTIN | 2 | 257 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
GtoPdb / IUPHAR curated pharmacology
(IUPHAR/BPS Guide to Pharmacology — expert-curated)
Target class: other ic — Orai channels
Most potent curated ligand interactions (2 total), top 2:
| Ligand | Action | Affinity | Parameter |
|---|---|---|---|
| zegocractin | Inhibition | 6.05 | pIC50 |
| GSK-7975A | Inhibition | 5.84 | pIC50 |
ChEMBL bioactivities
36 potent at pChembl≥5 of 65 total, top 36 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 6.05 | IC50 | 895 | nM | ZEGOCRACTIN |
| 5.80 | IC50 | 1600 | nM | CHEMBL2386009 |
| 5.68 | IC50 | 2100 | nM | CHEMBL2386172 |
| 5.66 | IC50 | 2200 | nM | CHEMBL2386000 |
| 5.62 | IC50 | 2400 | nM | CHEMBL2386180 |
| 5.57 | IC50 | 2700 | nM | CHEMBL2386179 |
| 5.55 | IC50 | 2800 | nM | CHEMBL2386186 |
| 5.50 | IC50 | 3200 | nM | CHEMBL2386172 |
| 5.47 | IC50 | 3400 | nM | CHEMBL2386185 |
| 5.46 | IC50 | 3500 | nM | CHEMBL2386180 |
| 5.31 | IC50 | 4900 | nM | CHEMBL2386185 |
| 5.29 | IC50 | 5100 | nM | CHEMBL2385996 |
| 5.23 | IC50 | 5900 | nM | CHEMBL2386174 |
| 5.22 | IC50 | 6000 | nM | CHEMBL2386000 |
| 5.19 | IC50 | 6400 | nM | CHEMBL2386184 |
| 5.16 | IC50 | 6900 | nM | CHEMBL2386005 |
| 5.14 | IC50 | 7200 | nM | CHEMBL2386186 |
| 5.13 | IC50 | 7400 | nM | CHEMBL2386009 |
| 5.12 | IC50 | 7600 | nM | CHEMBL2386171 |
| 5.11 | IC50 | 7700 | nM | CHEMBL2386181 |
| 5.10 | IC50 | 7900 | nM | CHEMBL2385999 |
| 5.10 | IC50 | 8000 | nM | CHEMBL2385998 |
| 5.09 | IC50 | 8200 | nM | CHEMBL2385999 |
| 5.07 | IC50 | 8600 | nM | CHEMBL2386179 |
| 5.06 | IC50 | 8700 | nM | DIPHENYL BORINIC ACID |
| 5.05 | IC50 | 9000 | nM | CHEMBL2386174 |
| 5.05 | IC50 | 8900 | nM | CHEMBL2385997 |
| 5.05 | IC50 | 8900 | nM | CHEMBL2385996 |
| 5.03 | IC50 | 9300 | nM | CHEMBL2386177 |
| 5.02 | IC50 | 9500 | nM | CHEMBL2386171 |
| 5.01 | IC50 | 9800 | nM | CHEMBL2386177 |
| 5.01 | IC50 | 9800 | nM | CHEMBL2386004 |
| 5.01 | IC50 | 9800 | nM | DIPHENYL BORINIC ACID |
| 5.00 | IC50 | 9900 | nM | CHEMBL2386178 |
| 5.00 | IC50 | 1.01e+04 | nM | CHEMBL2385998 |
| 5.00 | IC50 | 1e+04 | nM | CHEMBL2386178 |
PubChem BioAssay actives
35 with measured affinity, of 83 total; 21 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| N-[5-(6-chloro-2,2-difluoro-1,3-benzodioxol-5-yl)pyrazin-2-yl]-2-fluoro-6-methylbenzamide | 1774821: Inhibition of Orai2/STIM1 (unknown origin) | ic50 | 0.8950 | uM |
| 2,2-bis(4-methylphenyl)-1-oxa-3-azonia-2-boranuidacyclopentane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 1.6000 | uM |
| 2,2-bis[4-(trifluoromethyl)phenyl]-1-oxa-3-azonia-2-boranuidacyclopentane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 2.1000 | uM |
| 1,1-diphenyl-2-oxa-8-aza-5-azonia-1-boranuidaspiro[4.5]decane | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 2.2000 | uM |
| 2-(4-butylphenyl)-2-phenyl-1-oxa-3-azonia-2-boranuidacyclopentane | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 2.4000 | uM |
| 2-(4-methylphenyl)-2-phenyl-1-oxa-3-azonia-2-boranuidacyclopentane | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 2.7000 | uM |
| 2-(4-iodophenyl)-2-phenyl-1-oxa-3-azonia-2-boranuidacyclopentane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 2.8000 | uM |
| 2-(4-bromophenyl)-2-phenyl-1-oxa-3-azonia-2-boranuidacyclopentane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 3.4000 | uM |
| 3,3-dimethyl-2,2-diphenyl-1-oxa-3-azonia-2-boranuidacyclopentane | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 5.1000 | uM |
| 2,2-bis(4-fluorophenyl)-1-oxa-3-azonia-2-boranuidacyclopentane | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 5.9000 | uM |
| (4-chlorophenyl)-phenylborinic acid | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 6.4000 | uM |
| (4S)-4-(1H-indol-3-ylmethyl)-2,2-diphenyl-1-oxa-3-azonia-2-boranuidacyclopentan-5-one | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 6.9000 | uM |
| bis[4-(trifluoromethyl)phenyl]borinic acid | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 7.6000 | uM |
| 2-phenyl-2-(4-phenylphenyl)-1-oxa-3-azonia-2-boranuidacyclopentane | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 7.7000 | uM |
| 2,2-diphenyl-1-oxa-3-azonia-2-boranuidacyclohexane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 7.9000 | uM |
| (5R)-2,2-diphenyl-3-oxa-1-azonia-2-boranuidabicyclo[3.3.0]octane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 8.0000 | uM |
| diphenylborinic acid | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 8.7000 | uM |
| (5S)-2,2-diphenyl-3-oxa-1-azonia-2-boranuidabicyclo[3.3.0]octane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 8.9000 | uM |
| 2-(4-fluorophenyl)-2-phenyl-1-oxa-3-azonia-2-boranuidacyclopentane | 749403: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 9.3000 | uM |
| (4S)-4-(hydroxymethyl)-2,2-diphenyl-1-oxa-3-azonia-2-boranuidacyclopentan-5-one | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 9.8000 | uM |
| 2-(2-methylphenyl)-2-phenyl-1-oxa-3-azonia-2-boranuidacyclopentane | 749402: Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Cd2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | ic50 | 9.9000 | uM |
CTD chemical–gene interactions
37 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| trichostatin A | affects cotreatment, decreases expression, increases expression | 3 |
| Air Pollutants | increases expression, affects expression, increases abundance | 2 |
| Arsenic | affects methylation, affects cotreatment, decreases expression, increases abundance | 2 |
| Benzo(a)pyrene | decreases methylation, increases expression | 2 |
| Estradiol | affects cotreatment, increases expression | 2 |
| Nickel | increases expression | 2 |
| Smoke | decreases expression, increases abundance, increases expression | 2 |
| Valproic Acid | increases expression, increases methylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| sodium arsenite | increases abundance, affects cotreatment, decreases expression | 1 |
| cobaltous chloride | decreases expression | 1 |
| butyraldehyde | decreases expression | 1 |
| manganese chloride | affects cotreatment, decreases expression, increases abundance | 1 |
| potassium chromate(VI) | affects cotreatment, decreases expression | 1 |
| epigallocatechin gallate | affects cotreatment, decreases expression | 1 |
| monomethylarsonous acid | decreases expression | 1 |
| 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide | affects cotreatment, decreases expression | 1 |
| dorsomorphin | affects cotreatment, decreases expression | 1 |
| Bortezomib | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Benzene | increases expression | 1 |
| Doxorubicin | decreases expression | 1 |
| Lead | decreases expression | 1 |
| Manganese | affects cotreatment, decreases expression, increases abundance | 1 |
| Methyl Methanesulfonate | decreases expression | 1 |
| Ozone | affects expression, increases abundance | 1 |
| Plant Oils | decreases expression | 1 |
ChEMBL screening assays
5 unique, capped per target: 5 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2388390 | Binding | Inhibition of ORAl1/2/3 in HEK293 cells assessed as inhibition of Ca2+ influx after 10 mins by FLIPR assay in presence of thapsigargin | Design, synthesis and pharmacological characterization of analogs of 2-aminoethyl diphenylborinate (2-APB), a known store-operated calcium channel blocker, for inhibition of TRPV6-mediated calcium transport. — Bioorg Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.