ORM2
gene geneOn this page
Also known as AGP-BAGP-B'AGP2
Summary
ORM2 (orosomucoid 2, HGNC:8499) is a protein-coding gene on chromosome 9q32, encoding Alpha-1-acid glycoprotein 2 (P19652). Functions as a transport protein in the blood stream.
This gene encodes a key acute phase plasma protein. Because of its increase due to acute inflammation, this protein is classified as an acute-phase reactant. The specific function of this protein has not yet been determined; however, it may be involved in aspects of immunosuppression.
Source: NCBI Gene 5005 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 21 total
- Druggable target: yes
- MANE Select transcript:
NM_000608
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8499 |
| Approved symbol | ORM2 |
| Name | orosomucoid 2 |
| Location | 9q32 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | AGP-B, AGP-B’, AGP2 |
| Ensembl gene | ENSG00000228278 |
| Ensembl biotype | protein_coding |
| OMIM | 138610 |
| Entrez | 5005 |
Gene structure
Transcript identifiers
Ensembl transcripts: 10 — 10 protein_coding
ENST00000431067, ENST00000893195, ENST00000893196, ENST00000893197, ENST00000893198, ENST00000893199, ENST00000893200, ENST00000893201, ENST00000893202, ENST00000893203
RefSeq mRNA: 1 — MANE Select: NM_000608
NM_000608
CCDS: CCDS6804
Canonical transcript exons
ENST00000431067 — 6 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001652131 | 114331826 | 114331929 |
| ENSE00001661610 | 114330434 | 114330576 |
| ENSE00001828785 | 114333069 | 114333251 |
| ENSE00001882975 | 114329869 | 114330018 |
| ENSE00003564083 | 114331567 | 114331674 |
| ENSE00003647498 | 114330792 | 114330862 |
Expression profiles
Bgee: expression breadth ubiquitous, 158 present calls, max score 99.92.
Top tissues by expression
286 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| right lobe of liver | UBERON:0001114 | 99.92 | gold quality |
| liver | UBERON:0002107 | 99.52 | gold quality |
| male germ line stem cell (sensu Vertebrata) in testis | CL:0000089 ∩ UBERON:0000473 | 85.27 | silver quality |
| bone marrow | UBERON:0002371 | 78.93 | gold quality |
| body of stomach | UBERON:0001161 | 78.27 | gold quality |
| granulocyte | CL:0000094 | 76.22 | gold quality |
| stomach | UBERON:0000945 | 74.05 | gold quality |
| right lung | UBERON:0002167 | 73.10 | gold quality |
| blood | UBERON:0000178 | 72.44 | gold quality |
| bone marrow cell | CL:0002092 | 71.73 | gold quality |
| upper lobe of left lung | UBERON:0008952 | 70.97 | gold quality |
| right adrenal gland | UBERON:0001233 | 70.92 | gold quality |
| spleen | UBERON:0002106 | 69.86 | gold quality |
| upper lobe of lung | UBERON:0008948 | 69.86 | gold quality |
| fundus of stomach | UBERON:0001160 | 69.34 | gold quality |
| leukocyte | CL:0000738 | 68.80 | gold quality |
| prostate gland | UBERON:0002367 | 68.67 | gold quality |
| monocyte | CL:0000576 | 68.54 | gold quality |
| mononuclear cell | CL:0000842 | 68.37 | gold quality |
| right uterine tube | UBERON:0001302 | 67.08 | gold quality |
| left adrenal gland | UBERON:0001234 | 66.77 | gold quality |
| vermiform appendix | UBERON:0001154 | 65.40 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 64.59 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 64.50 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 63.96 | gold quality |
| adrenal gland | UBERON:0002369 | 63.71 | gold quality |
| adrenal cortex | UBERON:0001235 | 62.82 | gold quality |
| small intestine Peyer’s patch | UBERON:0003454 | 61.48 | gold quality |
| caecum | UBERON:0001153 | 61.47 | gold quality |
| endocervix | UBERON:0000458 | 61.45 | gold quality |
Single-cell (SCXA)
Detected in 3 experiment(s), a significant marker in 2.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-HCAD-9 | yes | 8312.28 |
| E-MTAB-10553 | yes | 3753.24 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): AR
miRNA regulators (miRDB)
16 targeting ORM2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4510 | 100.00 | 66.60 | 2050 |
| HSA-MIR-6127 | 100.00 | 66.76 | 2188 |
| HSA-MIR-6129 | 100.00 | 66.46 | 2080 |
| HSA-MIR-6130 | 100.00 | 66.69 | 2012 |
| HSA-MIR-6133 | 100.00 | 66.48 | 2064 |
| HSA-MIR-4500 | 99.99 | 72.72 | 2367 |
| HSA-MIR-320A-3P | 99.77 | 69.73 | 2107 |
| HSA-MIR-320B | 99.77 | 69.73 | 2107 |
| HSA-MIR-320C | 99.77 | 69.73 | 2107 |
| HSA-MIR-320D | 99.77 | 69.73 | 2107 |
| HSA-MIR-4429 | 99.77 | 69.62 | 2111 |
| HSA-MIR-1249-5P | 99.61 | 66.55 | 2049 |
| HSA-MIR-4643 | 99.49 | 67.63 | 1791 |
| HSA-MIR-6515-5P | 97.08 | 65.48 | 1219 |
| HSA-MIR-3126-5P | 96.87 | 65.83 | 912 |
| HSA-MIR-6875-5P | 96.87 | 65.49 | 958 |
Literature-anchored findings (GeneRIF, showing 21)
- structure of the alpha1-acid glycoprotein (AGP), or orosomucoid (ORM), gene was investigated in a Ghanaian mother and her child, who shared an unusual variant, ORM1 S2(C), found by isoelectric focusing (PMID:11587070)
- folds as a highly symmetrical all-beta protein dominated by a single eight-stranded antiparallel beta-sheet (PMID:12480518)
- the sera of patients with acute inflammation demonstrated increased numbers of bi-antennary and alpha1,3-fucosylated N-glycan structures at each glycosylation site (PMID:15863355)
- The binding of coumarin enantiomers to ORM2 is studied. (PMID:16290938)
- Results describe the thermal unfolding and reversibility of temperature-induced changes in alpha(1)-acid glycoprotein. (PMID:16331959)
- A different distribution of the area percentage of AGP forms is observed when comparing samples from diseased and healthy individuals, the most acidic AGP forms being present in a higher proportion in the samples from cancer patients. (PMID:17987628)
- The results indicate that, in accordance with prior expectations, the ORM2 variant is responsible for the acute-phase property of alpha-1 acid glycoprotein. (PMID:19018521)
- Characterized are more than 150 human Alpha-1-acid glycoprotein isoforms, differing both in the amino acid sequence and in the glycosylation. (PMID:20617306)
- Identify ORM genetic variations/haplotype structure associated with serum alpha-1-acid glycoprotein level and the pharmacokinetics of paclitaxel in Japanese cancer patients. (PMID:21638284)
- Alteration in expression of ORM2 suggests that ORM2 could be used as a potential biomarker in the diagnosis of colorectal cancer. (PMID:22363757)
- Data suggest that human serum albumin (HSA) might serve as a carrier in delivering chitooligomers to target tissues than alpha-1-glycoprotein (AGP) which has pharmacological importance. (PMID:24359035)
- These findings suggest that the ORM distal promoter region differentially regulates expression of ORM genes at basal level and in acute phase responses. (PMID:24389491)
- Data indicate that the band intensity of sialic acid content in alpha-1 Acid glycoprotein (AGP) of alcoholic liver cirrhosis was found to be lower than that in pooled control group. (PMID:25408356)
- Low ORM2 expression is associated with metastasis in hepatocellular carcinoma. (PMID:25965830)
- Neural cell interactions are important for brain physiology and pathology. Particularly, the interaction between non-neuronal cells plays a central role in regulating brain inflammation, which is closely linked to many brain disorders. Here, we newly identified orosomucoid-2 (ORM2) as an endogenous protein that mediates such non-neuronal glial cell interactions (PMID:28193696)
- Studies suggest plasma alpha-1-acid glycoprotein (AAG) as a potential predictive biomarker of docetaxel non-haematological AEs namely oral mucositis and rash. (PMID:28554261)
- the glycosylation change of alpha-1-acid glycoprotein (AGP) in hepatocellular carcinoma (HCC), cirrhosis and controls (PMID:28621608)
- Urinary ORM-2 and sCD14 levels were increased in patients with Rheumatoid Arthritis and were correlated with the disease activity. (PMID:30600953)
- Orosomucoid in liver diseases. (PMID:34963738)
- Diagnostic role of plasma ORM2 in differentiating prostate cancer from benign prostatic hyperplasia. (PMID:36198834)
- Influence of Intrauterine Inflammation, Delivery, and Postnatal Feeding on the Temporal Changes of Serum Alpha 1 Acid Glycoprotein Levels in Extremely-Low-Birth-Weight Infants. (PMID:36501194)
Cross-species orthologs
5 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | apom | ENSDARG00000076838 |
| mus_musculus | Orm3 | ENSMUSG00000028359 |
| mus_musculus | Orm1 | ENSMUSG00000039196 |
| mus_musculus | Orm2 | ENSMUSG00000061540 |
| rattus_norvegicus | Orm1 | ENSRNOG00000007886 |
Paralogs (1): ORM1 (ENSG00000229314)
Protein
Protein identifiers
Alpha-1-acid glycoprotein 2 — P19652 (reviewed: P19652)
Alternative names: Orosomucoid-2
All UniProt accessions (1): P19652
UniProt curated annotations — full annotation on UniProt →
Function. Functions as a transport protein in the blood stream. Binds various hydrophobic ligands in the interior of its beta-barrel domain. Also binds synthetic drugs and influences their distribution and availability. Appears to function in modulating the activity of the immune system during the acute-phase reaction.
Subcellular location. Secreted.
Tissue specificity. Expressed by the liver and secreted in plasma.
Post-translational modifications. N-glycosylated. N-glycan heterogeneity at Asn-33: Hex5HexNAc4 (minor), Hex6HexNAc5 (major) and dHex1Hex6HexNAc5 (minor).
Domain organisation. Contains a beta-barrel that binds various ligands in its interior.
Induction. Synthesis is controlled by glucocorticoids, interleukin-1 and interleukin-6, It increases 5- to 50-fold upon inflammation.
Polymorphism. Many different variants of ORM2 are known.
Similarity. Belongs to the calycin superfamily. Lipocalin family.
RefSeq proteins (1): NP_000599* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000566 | Lipocln_cytosolic_FA-bd_dom | Domain |
| IPR001500 | A1A_glycop | Family |
| IPR012674 | Calycin | Homologous_superfamily |
Pfam: PF00061
UniProt features (39 total): strand 8, helix 6, sequence variant 5, sequence conflict 5, turn 5, glycosylation site 5, disulfide bond 2, signal peptide 1, chain 1, modified residue 1
Structure
Experimental structures (PDB)
5 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 7OUB | X-RAY DIFFRACTION | 1.82 |
| 3APU | X-RAY DIFFRACTION | 2.1 |
| 3APV | X-RAY DIFFRACTION | 2.15 |
| 3APW | X-RAY DIFFRACTION | 2.2 |
| 3APX | X-RAY DIFFRACTION | 2.2 |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P19652-F1 | 91.68 | 0.84 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 19
Disulfide bonds (2): 23–165, 90–183
Glycosylation sites (5): 33, 56, 72, 93, 103
Function
Pathways and Gene Ontology
Reactome pathways
7 pathways
| ID | Pathway |
|---|---|
| R-HSA-114608 | Platelet degranulation |
| R-HSA-6798695 | Neutrophil degranulation |
| R-HSA-109582 | Hemostasis |
| R-HSA-168249 | Innate Immune System |
| R-HSA-168256 | Immune System |
| R-HSA-76002 | Platelet activation, signaling and aggregation |
| R-HSA-76005 | Response to elevated platelet cytosolic Ca2+ |
MSigDB gene sets: 93 (showing top):
MODULE_52, REACTOME_INNATE_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, GNF2_GSTM1, GOCC_SECRETORY_GRANULE, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, MODULE_45, GNF2_HPN, GOBP_POSITIVE_REGULATION_OF_CYTOKINE_PRODUCTION, MODULE_16, GOBP_INTERLEUKIN_1_PRODUCTION, GOBP_POSITIVE_REGULATION_OF_TUMOR_NECROSIS_FACTOR_SUPERFAMILY_CYTOKINE_PRODUCTION, MODULE_66, MODULE_118, MODULE_75
GO Biological Process (5): regulation of immune system process (GO:0002682), acute-phase response (GO:0006953), positive regulation of interleukin-1 beta production (GO:0032731), positive regulation of interleukin-1 production (GO:0032732), positive regulation of tumor necrosis factor production (GO:0032760)
GO Molecular Function (1): protein binding (GO:0005515)
GO Cellular Component (7): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), platelet alpha granule lumen (GO:0031093), azurophil granule lumen (GO:0035578), specific granule lumen (GO:0035580), extracellular exosome (GO:0070062), blood microparticle (GO:0072562)
Reactome top-level categories
Rollup of top-5 pathways:
| Category | Pathways |
|---|---|
| Response to elevated platelet cytosolic Ca2+ | 1 |
| Innate Immune System | 1 |
| Immune System | 1 |
| Hemostasis | 1 |
| Platelet activation, signaling and aggregation | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| secretory granule lumen | 3 |
| cellular anatomical structure | 2 |
| immune system process | 1 |
| regulation of biological process | 1 |
| acute inflammatory response | 1 |
| interleukin-1 beta production | 1 |
| regulation of interleukin-1 beta production | 1 |
| positive regulation of interleukin-1 production | 1 |
| positive regulation of cytokine production | 1 |
| interleukin-1 production | 1 |
| regulation of interleukin-1 production | 1 |
| tumor necrosis factor production | 1 |
| regulation of tumor necrosis factor production | 1 |
| positive regulation of tumor necrosis factor superfamily cytokine production | 1 |
| binding | 1 |
| platelet alpha granule | 1 |
| vacuolar lumen | 1 |
| azurophil granule | 1 |
| specific granule | 1 |
| extracellular vesicle | 1 |
| extracellular region | 1 |
Protein interactions and networks
STRING
1136 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| ORM2 | ALB | P02768 | 998 |
| ORM2 | SERPINA1 | P01009 | 949 |
| ORM2 | HP | P00737 | 929 |
| ORM2 | CP | P00450 | 898 |
| ORM2 | CRP | P02741 | 869 |
| ORM2 | ORMDL1 | Q9P0S3 | 851 |
| ORM2 | AHSG | P02765 | 849 |
| ORM2 | AMBP | P00977 | 840 |
| ORM2 | SERPINA3 | P01011 | 830 |
| ORM2 | ORMDL2 | Q53FV1 | 820 |
| ORM2 | A2M | P01023 | 798 |
| ORM2 | TTR | P02766 | 797 |
| ORM2 | APOA1 | P02647 | 778 |
| ORM2 | ORMDL3 | Q8N138 | 774 |
| ORM2 | HPX | P02790 | 770 |
IntAct
22 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| ORM1 | ORM2 | psi-mi:“MI:0914”(association) | 0.620 |
| ORM2 | ORM1 | psi-mi:“MI:0915”(physical association) | 0.620 |
| ORM1 | ORM2 | psi-mi:“MI:0915”(physical association) | 0.620 |
| LECT2 | psi-mi:“MI:0915”(physical association) | 0.400 | |
| STK3 | ORM2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| CYP39A1 | ORM2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| PRDX6 | ORM2 | psi-mi:“MI:0915”(physical association) | 0.370 |
| GDPD1 | CP | psi-mi:“MI:0914”(association) | 0.350 |
| GNG8 | POTEF | psi-mi:“MI:0914”(association) | 0.350 |
| PPP2R2B | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| CDKN1B | YKT6 | psi-mi:“MI:0914”(association) | 0.350 |
| PHF11 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| RHBDD1 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| P2RX6 | A2ML1 | psi-mi:“MI:0914”(association) | 0.350 |
| MATN2 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| UBE2U | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| KLK10 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| SCGB1D1 | IGLL5 | psi-mi:“MI:0914”(association) | 0.350 |
| psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (21): ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM2 (Affinity Capture-MS), ORM1 (Affinity Capture-MS)
ESM2 similar proteins: A2AEP0, A2AJB7, A2BIM8, B5X0G2, F0UZ12, H2B3G5, O08976, O18874, P02762, P02763, P02764, P04938, P06910, P06911, P07361, P07435, P08937, P09465, P11588, P11589, P11591, P14630, P15399, P19652, P20462, P21350, P21352, P21760, P35578, P81245, P81608, P83508, Q28133, Q29144, Q29147, Q29614, Q2LE37, Q3SZR3, Q5R894, Q5VFH6
Diamond homologs: P02763, P02764, P07361, P19652, P21350, P21352, P25227, Q3SZR3, Q60590, Q63805
SIGNOR signaling
1 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| NPR1 | “up-regulates activity” | ORM2 | phosphorylation |
Disease & clinical
Clinical variants and AI predictions
ClinVar
21 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 14 |
| Likely benign | 4 |
| Benign | 0 |
Top pathogenic / likely-pathogenic (0)
SpliceAI
641 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 9:114330017:GG:G | donor_gain | 1.0000 |
| 9:114330018:GG:G | donor_gain | 1.0000 |
| 9:114330772:C:CA | acceptor_gain | 1.0000 |
| 9:114330779:T:TA | acceptor_gain | 1.0000 |
| 9:114330780:G:A | acceptor_gain | 1.0000 |
| 9:114330790:A:AG | acceptor_gain | 1.0000 |
| 9:114330791:G:GG | acceptor_gain | 1.0000 |
| 9:114330858:A:G | donor_gain | 1.0000 |
| 9:114331563:CCA:C | acceptor_loss | 1.0000 |
| 9:114331565:A:AG | acceptor_gain | 1.0000 |
| 9:114331565:AGAG:A | acceptor_gain | 1.0000 |
| 9:114331565:AGAGG:A | acceptor_gain | 1.0000 |
| 9:114331566:G:GG | acceptor_gain | 1.0000 |
| 9:114331566:GA:G | acceptor_gain | 1.0000 |
| 9:114331566:GAGG:G | acceptor_gain | 1.0000 |
| 9:114331566:GAGGG:G | acceptor_gain | 1.0000 |
| 9:114331821:T:TA | acceptor_gain | 1.0000 |
| 9:114331821:TGCA:T | acceptor_loss | 1.0000 |
| 9:114331822:GCAG:G | acceptor_loss | 1.0000 |
| 9:114331823:CAGCT:C | acceptor_loss | 1.0000 |
| 9:114331824:A:AG | acceptor_gain | 1.0000 |
| 9:114331824:AGCT:A | acceptor_gain | 1.0000 |
| 9:114331825:G:GT | acceptor_gain | 1.0000 |
| 9:114331825:GC:G | acceptor_gain | 1.0000 |
| 9:114331825:GCT:G | acceptor_gain | 1.0000 |
| 9:114331825:GCTG:G | acceptor_gain | 1.0000 |
| 9:114331825:GCTGA:G | acceptor_gain | 1.0000 |
| 9:114331928:AG:A | donor_loss | 1.0000 |
| 9:114331929:GGTAA:G | donor_loss | 1.0000 |
| 9:114331930:GT:G | donor_loss | 1.0000 |
AlphaMissense
1315 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 9:114330449:T:C | F44L | 0.980 |
| 9:114330451:T:A | F44L | 0.980 |
| 9:114330451:T:G | F44L | 0.980 |
| 9:114330802:T:A | C90S | 0.978 |
| 9:114330803:G:C | C90S | 0.978 |
| 9:114330446:T:A | W43R | 0.975 |
| 9:114330446:T:C | W43R | 0.975 |
| 9:114330448:G:C | W43C | 0.973 |
| 9:114330448:G:T | W43C | 0.973 |
| 9:114330802:T:C | C90R | 0.973 |
| 9:114333075:T:A | C183S | 0.973 |
| 9:114333076:G:C | C183S | 0.973 |
| 9:114331864:T:C | F159L | 0.969 |
| 9:114331866:C:A | F159L | 0.969 |
| 9:114331866:C:G | F159L | 0.969 |
| 9:114331865:T:C | F159S | 0.966 |
| 9:114330804:C:G | C90W | 0.962 |
| 9:114330515:T:C | F66L | 0.961 |
| 9:114330517:C:A | F66L | 0.961 |
| 9:114330517:C:G | F66L | 0.961 |
| 9:114330459:C:A | A47E | 0.958 |
| 9:114333075:T:C | C183R | 0.957 |
| 9:114330461:T:C | S48P | 0.952 |
| 9:114330803:G:A | C90Y | 0.951 |
| 9:114329935:A:C | S11R | 0.948 |
| 9:114329937:C:A | S11R | 0.948 |
| 9:114329937:C:G | S11R | 0.948 |
| 9:114331865:T:G | F159C | 0.947 |
| 9:114333076:G:A | C183Y | 0.946 |
| 9:114330803:G:T | C90F | 0.944 |
dbSNP variants (sampled 300 via entrez): RS1001633471 (9:114333351 GC>G,GCC), RS1002905971 (9:114332357 A>C,G), RS1004687526 (9:114333312 G>A,C), RS1005038826 (9:114333003 G>A,C), RS1006408131 (9:114332319 T>C,G), RS1006767272 (9:114332003 G>A), RS1006857116 (9:114332835 G>A), RS1007600038 (9:114331711 T>C,G), RS1007805037 (9:114331560 C>T), RS1008860480 (9:114330775 C>G,T), RS1010213017 (9:114332615 T>C), RS1010495778 (9:114331321 C>A,G), RS1010546722 (9:114331499 C>A,T), RS1012509877 (9:114331269 A>C), RS1014134401 (9:114329636 C>T)
Disease associations
OMIM: gene MIM:138610 | disease phenotypes:
GenCC curated gene-disease
Mondo (0):
Orphanet (0):
HPO phenotypes
0 total (0 of 0 shown, HPO-id order):
GWAS associations
0 associations (top):
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL5958 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
PharmGKB clinical annotations
1 annotations.
| Variant | Type | Level | Drugs | Phenotypes |
|---|---|---|---|---|
| rs2250242 | Metabolism/PK | 3 | docetaxel | Prostatic Neoplasms |
PharmGKB variants
2 variants.
| Variant | Genes | Level | Score | #Clin annots | Drugs |
|---|---|---|---|---|---|
| rs1687390 | ORM1, ORM2 | 0.00 | 0 | ||
| rs2250242 | AKNA, ORM2 | 3 | 1.00 | 1 | docetaxel |
CTD chemical–gene interactions
41 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Folic Acid | decreases expression, affects cotreatment, increases expression | 2 |
| Valproic Acid | decreases expression, decreases methylation, increases expression | 2 |
| Cyclosporine | increases expression, decreases expression | 2 |
| methylmercuric chloride | increases expression | 1 |
| methyleugenol | decreases expression | 1 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | affects expression | 1 |
| sodium arsenite | decreases expression | 1 |
| benazol P | affects expression | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| acyline | decreases expression | 1 |
| entinostat | decreases expression | 1 |
| K 7174 | decreases expression | 1 |
| belinostat | decreases expression | 1 |
| theaflavin-3,3’-digallate | affects expression | 1 |
| Panobinostat | decreases expression | 1 |
| Ethanol | affects cotreatment, increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Cadmium | affects binding | 1 |
| Calcitriol | increases expression, affects cotreatment | 1 |
| Chlorpromazine | affects binding, decreases reaction | 1 |
| Dipyridamole | affects binding, decreases reaction | 1 |
| Disopyramide | affects binding, decreases reaction | 1 |
| Imipramine | decreases reaction, affects binding | 1 |
| Lead | affects binding | 1 |
| Lidocaine | affects binding, decreases reaction | 1 |
| Methadone | decreases reaction, affects binding | 1 |
| Nickel | affects binding | 1 |
| Phenylmercuric Acetate | decreases expression | 1 |
ChEMBL screening assays
1 unique, capped per target: 1 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL936357 | Binding | Binding affinity to human ORM2 at 37 degC by induced circular dichroism method | Selective plasma protein binding of antimalarial drugs to alpha1-acid glycoprotein. — Bioorg Med Chem |
Clinical trials (associated diseases)
0 trials via MONDO — disease-level, not drug-specific.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.