OSMR

gene
On this page

Also known as OSMRBOSMRbeta

Summary

OSMR (oncostatin M receptor, HGNC:8507) is a protein-coding gene on chromosome 5p13.1, encoding Oncostatin-M-specific receptor subunit beta (Q99650). Associates with IL31RA to form the IL31 receptor.

This gene encodes a member of the type I cytokine receptor family. The encoded protein heterodimerizes with interleukin 6 signal transducer to form the type II oncostatin M receptor and with interleukin 31 receptor A to form the interleukin 31 receptor, and thus transduces oncostatin M and interleukin 31 induced signaling events. Mutations in this gene have been associated with familial primary localized cutaneous amyloidosis. Alternatively spliced transcript variants encoding different isoforms have been found for this gene.

Source: NCBI Gene 9180 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): amyloidosis, primary localized cutaneous, 1 (Strong, GenCC) — +1 more curated relationship
  • GWAS associations: 24
  • Clinical variants (ClinVar): 216 total — 3 pathogenic, 1 likely-pathogenic
  • Phenotypes (HPO): 7
  • Druggable target: yes
  • MANE Select transcript: NM_003999

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:8507
Approved symbolOSMR
Nameoncostatin M receptor
Location5p13.1
Locus typegene with protein product
StatusApproved
AliasesOSMRB, OSMRbeta
Ensembl geneENSG00000145623
Ensembl biotypeprotein_coding
OMIM601743
Entrez9180

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 7 protein_coding, 2 nonsense_mediated_decay

ENST00000274276, ENST00000502536, ENST00000508882, ENST00000509237, ENST00000513831, ENST00000880313, ENST00000880314, ENST00000880315, ENST00000959611

RefSeq mRNA: 5 — MANE Select: NM_003999 NM_001168355, NM_001323504, NM_001323505, NM_001323506, NM_003999

CCDS: CCDS3928, CCDS54847

Canonical transcript exons

ENST00000274276 — 18 exons

ExonStartEnd
ENSE000009713443887620138876373
ENSE000009713453888159338881764
ENSE000009713463888382738884111
ENSE000009713473888534938885484
ENSE000009713483888603938886190
ENSE000009713503890388238904024
ENSE000009713513890435338904503
ENSE000009713523891754638917622
ENSE000009713533891884038919062
ENSE000009713553892161538921794
ENSE000009713563892315038923254
ENSE000009713573892442238924595
ENSE000009713583892520438925371
ENSE000009713593893188338931964
ENSE000009713603893246338932535
ENSE000009713613893287238935641
ENSE000020585453884601238846387
ENSE000023885153886903238869117

Expression profiles

Bgee: expression breadth ubiquitous, 256 present calls, max score 99.09.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 33.1910 / max 425.4799, expressed in 1396 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter IDTPM avgSamples expressed
5619830.74991377
561971.7388970
561990.4848326
561960.2175104

Top tissues by expression

283 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
pericardiumUBERON:000240799.09gold quality
saphenous veinUBERON:000731897.08gold quality
cartilage tissueUBERON:000241896.51gold quality
tibiaUBERON:000097996.08gold quality
lower lobe of lungUBERON:000894995.63gold quality
heart right ventricleUBERON:000208095.02gold quality
peritoneumUBERON:000235894.30gold quality
omental fat padUBERON:001041494.30gold quality
visceral pleuraUBERON:000240194.22gold quality
parietal pleuraUBERON:000240094.03gold quality
superficial temporal arteryUBERON:000161493.82gold quality
stromal cell of endometriumCL:000225593.61gold quality
descending thoracic aortaUBERON:000234593.50gold quality
upper lobe of lungUBERON:000894893.48gold quality
tibial arteryUBERON:000761093.37gold quality
popliteal arteryUBERON:000225093.36gold quality
adipose tissue of abdominal regionUBERON:000780893.33gold quality
upper lobe of left lungUBERON:000895293.33gold quality
aortaUBERON:000094793.17gold quality
pleuraUBERON:000097793.12gold quality
right coronary arteryUBERON:000162593.07gold quality
thoracic aortaUBERON:000151592.96gold quality
ascending aortaUBERON:000149692.93gold quality
right lungUBERON:000216792.63gold quality
urethraUBERON:000005792.27gold quality
left coronary arteryUBERON:000162692.24gold quality
coronary arteryUBERON:000162192.21gold quality
synovial jointUBERON:000221792.20gold quality
germinal epithelium of ovaryUBERON:000130492.05gold quality
left uterine tubeUBERON:000130391.92gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-ANND-3yes17.92
E-MTAB-6386no274.74

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

112 targeting OSMR, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-3613-3P100.0076.367965
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-4481100.0066.421669
HSA-MIR-3646100.0073.565283
HSA-MIR-4455100.0065.481587
HSA-MIR-656-3P100.0072.152788
HSA-MIR-450099.9972.722367
HSA-MIR-371B-5P99.9975.344759
HSA-MIR-318599.9968.121959
HSA-MIR-548P99.9872.253784
HSA-MIR-373-5P99.9875.364753
HSA-MIR-616-5P99.9875.584775
HSA-LET-7A-5P99.9872.291790
HSA-LET-7B-5P99.9872.311790
HSA-LET-7C-5P99.9872.291790
HSA-LET-7E-5P99.9872.291790
HSA-LET-7F-5P99.9872.561784
HSA-LET-7G-5P99.9872.371784
HSA-LET-7I-5P99.9872.371788
HSA-MIR-98-5P99.9872.331787
HSA-MIR-4745-5P99.9865.951028
HSA-MIR-548N99.9871.944170
HSA-MIR-477599.9875.006394
HSA-MIR-548AN99.9770.912817
HSA-LET-7D-5P99.9671.761632
HSA-MIR-445899.9671.641650
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-LET-7C-3P99.9573.422862
HSA-MIR-548J-3P99.9472.614881

Literature-anchored findings (GeneRIF, showing 40)

  • expression and evidence for STAT3 activation in human ovarian carcinomas (PMID:12061840)
  • The expression of OSM and its receptor in ovarian tissue from fetuses and women suggests a possible role of OSM in growth initiation of human primordial follicles. (PMID:15831292)
  • sOSMR is able to bind OSM and interleukin-31 when associated to soluble gp130 or soluble interleukin-31R, respectively, and to neutralize both cytokine properties (PMID:17028186)
  • FPLCA has been mapped to 5p13.1-q11.2, and by candidate gene analysis, study identified missense mutations in the OSMR gene, encoding oncostatin M-specific receptor beta (OSMRbeta), in three families. (PMID:18179886)
  • murine OSMR initiates STAT5 activation directly via the receptor bound Janus kinases. Intriguingly, the murine receptor preferentially recruits JAK2, whereas the human receptor seems to have a higher affinity for JAK1. (PMID:18430728)
  • IL-6 and Oncostatin M individually affect the profile of leukocyte trafficking (PMID:18641356)
  • The renal parenchyma is capable of generating a strong acute phase response, likely mediated via OSM/OSMR. (PMID:19158344)
  • Epigenetic silencing and DNA methylation of OSMR is associated with colorectal cancers. (PMID:19223499)
  • study reporta a Japanese family with familial primary localized cutaneous amyloidosis in whom a novel OSMR mutation was observed (PMID:19375894)
  • study provides evidence for the existence of a novel pathogenic mutation in the OSMR gene in a caucasian family with familial primary cutaneous amyloidosis (PMID:19466957)
  • provides a biologic rationale for silencing of OSMR in colon cancer progression and highlight a new therapeutic target. Moreover, detection and quantification of OSMR promoter methylation in fecal DNA is a highly specific diagnostic biomarker for CRC (PMID:19662090)
  • The identification of OSMR and IL31RA gene pathology provides an explanation of the high prevalence of primary cutaneous amyloidosis in Taiwan as well as new insight into disease pathophysiology. (PMID:19690585)
  • Two new pathogenic heterozygous missense mutations in the OSMR gene (p.Val631Leu and p.Asp647Tyr) were identified in two Dutch familial primary localized cutaneous amyloidosis families. (PMID:20507362)
  • An alternatively spliced variant of OSMR transcribing a soluble form of this receptor has been characterized in esophageal squamous cell carcinoma. (PMID:21394648)
  • Aberrant methylation of the OSMR gene is associated with non-invasive colorectal cancer. (PMID:21508378)
  • We conclude that OSMR overexpression in cervical SCC cells provides increased sensitivity to OSM, which induces pro-malignant changes. (PMID:21952923)
  • This study identified a new heterozygous OSMR missense mutation in primary localized cutaneous amyloidosis. (PMID:22062952)
  • enhanced production by beta-defensin-2 in T cells (PMID:22137028)
  • A unique loop structure in oncostatin M determines binding affinity toward oncostatin M receptor and leukemia inhibitory factor receptor. (PMID:22829597)
  • We conclude that an OSMR/TGM2/integrin-alpha5beta1/fibronectin pathway is of biological significance in cervical squamous cell carcinoma (PMID:23765377)
  • The disease severity of rheumatoid arthritis and systemic lupus erythematosus can be partially affected by the OSMR promoter polymorphisms. (PMID:24219225)
  • oncostatin M is a cytokine possessing vigorous antiviral and immunostimulatory properties which is released by APC upon interaction with CD40L present on activated CD4+ T cells. (PMID:24418171)
  • primary localized cutaneous amyloidosis has a missense mutation in oncostatin M receptor beta (PMID:25054142)
  • The interleukin IL-31/IL-31receptor axis contributes to tumor growth in human follicular lymphoma. (PMID:25283844)
  • this study offers new findings on the molecular genetics and disease relevance of mutations in OSMR in Familial primary localized cutaneous amyloidosis. (PMID:25792357)
  • Oncostatin M and interleukin-31: Cytokines, receptors, signal transduction and physiology. (PMID:26198770)
  • OSMRBeta in neurons is critical for neuronal survival during cerebral ischemic/reperfusion. (PMID:26311783)
  • the RET p.S891A mutation combined with OSMR p.G513D may underlie a novel phenotype manifesting as familial medullary thyroid carcinoma and cutaneous amyloidosis (PMID:26356818)
  • OSM:OSMR interactions are able to induce EMT, increased cancer stem cell-like properties and enhanced lung colonisation in SCC cells (PMID:27351213)
  • OSMR-beta deficiency in macrophages improved high-fat diet-induced atherogenesis and plaque vulnerability (PMID:28258089)
  • OSM and OSMR are highly expressed in inflammatory bowel disease intestinal mucosa compared to control mucosa. Intestinal stromal cells express abundant OSMR. (PMID:28368383)
  • The PLAC1 expression has been demonstrated for the first time in cervical cancers. This preliminary study has further revealed a complex relationship between PLAC1 expression, cervical cancer histologic type, p53, and HPV type that requires further investigation. (PMID:28375929)
  • Missense mutatios were found in exon 10 of the oncostatin-M specific receptor beta subunit (OSMR) gene in all of the six patients from family 1, and in exon 14 of the OSMR gene in all of the four patients from family 2. (PMID:29419851)
  • substitution of the AB loop and D-helix in LIF with their OSM counterparts was sufficient for OSMR activation (PMID:29511087)
  • Polymorphisms of the OSMR rs2292016 locus are related to the development and outcome of DCM. (PMID:29652994)
  • The current study suggested that the OSMR gene is highly expressed in human chronic autoimmune urticaria (CAU) skin tissues, and cause the up-regulation of the JAK/STAT3 signaling pathway-related genes. OSMR gene silencing in mice inhibits the activation of the JAK/STAT3 signaling pathway, thereby suppressing the development of CAU. (PMID:30134804)
  • Overexpression of LINC00520 contributes to the aggravation of Acute kidney injury by targeting miR-27b-3p/ OSMR. (PMID:30684280)
  • The present data indicate OSMR mutations as not only the main cause of fPLCA, but also the potential source of the pathogenesis of sPLCA, although the exact molecular mechanism remains unknown. (PMID:30734345)
  • OSMR genotype frequencies were found to be associated with higher recurrence in bladder cancer, and it may serve as a biomarker candidate gene to predict prognosis of this disease. (PMID:30755233)
  • High OSMR expression is associated with metastasis in gastric cancer. (PMID:30778797)

Cross-species orthologs

8 orthologs

OrganismSymbolGene ID
danio_rerioghrbENSDARG00000007671
danio_rerioil11raENSDARG00000026736
danio_reriolifrbENSDARG00000039863
danio_rerioghraENSDARG00000054771
danio_reriolifraENSDARG00000098857
danio_rerioil6rENSDARG00000104474
mus_musculusOsmrENSMUSG00000022146
rattus_norvegicusOsmrENSRNOG00000033192

Paralogs (23): CRLF1 (ENSG00000006016), IL12RB2 (ENSG00000081985), IL5RA (ENSG00000091181), IL12RB1 (ENSG00000096996), IL27RA (ENSG00000104998), EBI3 (ENSG00000105246), GHR (ENSG00000112964), PRLR (ENSG00000113494), LIFR (ENSG00000113594), LEPR (ENSG00000116678), CSF3R (ENSG00000119535), CNTFR (ENSG00000122756), IL13RA2 (ENSG00000123496), IL13RA1 (ENSG00000131724), IL6ST (ENSG00000134352), IL11RA (ENSG00000137070), IL2RG (ENSG00000147168), IL6R (ENSG00000160712), IL23R (ENSG00000162594), IL31RA (ENSG00000164509), IL3RA (ENSG00000185291), CSF2RA (ENSG00000198223), CRLF2 (ENSG00000205755)

Protein

Protein identifiers

Oncostatin-M-specific receptor subunit betaQ99650 (reviewed: Q99650)

Alternative names: Interleukin-31 receptor subunit beta

All UniProt accessions (4): Q99650, H0Y8W9, H0Y9E3, H0YAD1

UniProt curated annotations — full annotation on UniProt →

Function. Associates with IL31RA to form the IL31 receptor. Binds IL31 to activate STAT3 and possibly STAT1 and STAT5. Capable of transducing OSM-specific signaling events.

Subunit / interactions. Heterodimer composed of OSMR and IL6ST (type II OSM receptor). Heterodimer with IL31RA to form the IL31 receptor.

Subcellular location. Membrane.

Tissue specificity. Expressed in keratinocytes (at protein level). Expressed at relatively high levels in all neural cells as well as fibroblast and epithelial cells.

Disease relevance. Amyloidosis, primary localized cutaneous, 1 (PLCA1) [MIM:105250] A primary amyloidosis characterized by localized cutaneous amyloid deposition. This condition usually presents with itching (especially on the lower legs) and visible changes of skin hyperpigmentation and thickening that may be exacerbated by chronic scratching and rubbing. Primary localized cutaneous amyloidosis is often divided into macular and lichen subtypes although many affected individuals often show both variants coexisting. Lichen amyloidosis characteristically presents as a pruritic eruption of grouped hyperkeratotic papules with a predilection for the shins, calves, ankles and dorsa of feet and thighs. Papules may coalesce to form hyperkeratotic plaques that can resemble lichen planus, lichen simplex or nodular prurigo. Macular amyloidosis is characterized by small pigmented macules that may merge to produce macular hyperpigmentation, sometimes with a reticulate or rippled pattern. In macular and lichen amyloidosis, amyloid is deposited in the papillary dermis in association with grouped colloid bodies, thought to represent degenerate basal keratinocytes. The amyloid deposits probably reflect a combination of degenerate keratin filaments, serum amyloid P component, and deposition of immunoglobulins. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell-surface receptor binding. The box 1 motif is required for JAK interaction and/or activation.

Induction. Activated by oncostatin-M. Up-regulated by IFNG/IFN-gamma. Up-regulated by bacterial lipopolysaccharides (LPS). Up-regulated by triacylated lipoprotein (Pam3Cys).

Similarity. Belongs to the type I cytokine receptor family. Type 2 subfamily.

Isoforms (2)

UniProt IDNamesCanonical?
Q99650-11yes
Q99650-22

RefSeq proteins (5): NP_001161827, NP_001310433, NP_001310434, NP_001310435, NP_003990* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR003529Hematopoietin_rcpt_Gp130_CSConserved_site
IPR003961FN3_domDomain
IPR013783Ig-like_foldHomologous_superfamily
IPR036116FN3_sfHomologous_superfamily
IPR040817LIFR_D2Domain
IPR048497LIF-R-like_Ig-likeDomain
IPR052672Type1_Cytokine_Rcpt_Type2Family

Pfam: PF00041, PF17971, PF21177, PF25552

UniProt features (32 total): sequence variant 11, glycosylation site 5, domain 4, short sequence motif 2, modified residue 2, splice variant 2, topological domain 2, signal peptide 1, chain 1, disulfide bond 1, transmembrane region 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q99650-F174.070.36

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Post-translational modifications (2): 826, 889

Disulfide bonds (1): 245–255

Glycosylation sites (5): 163, 326, 380, 446, 580

Function

Pathways and Gene Ontology

Reactome pathways

1 pathways

IDPathway
R-HSA-6788467IL-6-type cytokine receptor ligand interactions

MSigDB gene sets: 253 (showing top): GSE18804_BRAIN_VS_COLON_TUMORAL_MACROPHAGE_DN, GSE45365_NK_CELL_VS_CD11B_DC_DN, BORCZUK_MALIGNANT_MESOTHELIOMA_UP, ACTACCT_MIR196A_MIR196B, YAGI_AML_WITH_INV_16_TRANSLOCATION, RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_UP, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOBP_INFLAMMATORY_RESPONSE, KAAB_FAILED_HEART_ATRIUM_DN, GOBP_RESPONSE_TO_PEPTIDE, GRAESSMANN_APOPTOSIS_BY_SERUM_DEPRIVATION_UP, MENSE_HYPOXIA_UP, GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN, GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN, GOCC_CELL_SURFACE

GO Biological Process (5): positive regulation of acute inflammatory response (GO:0002675), positive regulation of cell population proliferation (GO:0008284), cytokine-mediated signaling pathway (GO:0019221), response to cytokine (GO:0034097), oncostatin-M-mediated signaling pathway (GO:0038165)

GO Molecular Function (6): cytokine receptor activity (GO:0004896), ciliary neurotrophic factor receptor binding (GO:0005127), growth factor binding (GO:0019838), cytokine binding (GO:0019955), oncostatin-M receptor activity (GO:0004924), protein binding (GO:0005515)

GO Cellular Component (6): plasma membrane (GO:0005886), type I oncostatin-M receptor complex (GO:0005900), external side of plasma membrane (GO:0009897), apical plasma membrane (GO:0016324), signaling receptor complex (GO:0043235), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-1 pathways:

CategoryPathways
Interleukin-6 family signaling1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cytokine-mediated signaling pathway2
protein binding2
acute inflammatory response1
regulation of acute inflammatory response1
positive regulation of inflammatory response1
cell population proliferation1
regulation of cell population proliferation1
positive regulation of cellular process1
cell surface receptor signaling pathway1
cellular response to cytokine stimulus1
response to peptide1
transmembrane signaling receptor activity1
cytokine binding1
immune receptor activity1
cytokine receptor binding1
cytokine receptor activity1
oncostatin-M-mediated signaling pathway1
binding1
membrane1
cell periphery1
plasma membrane signaling receptor complex1
plasma membrane1
cell surface1
side of membrane1
apical part of cell1
plasma membrane region1
protein-containing complex1
cellular anatomical structure1

Protein interactions and networks

STRING

1453 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
OSMROSMP13725998
OSMRIL31Q6EBC2995
OSMRIL31RAQ8NI17989
OSMRSHC1P29353888
OSMRCTF1Q16619863
OSMRIL11P20809845
OSMRJAK1P23458843
OSMRLIFRP42702813
OSMRCNTFP26441802
OSMRIL6P05231800
OSMRLIFP15018797
OSMRIL6STP40189761
OSMRCNTFRP26992746
OSMRERBB2P04626692
OSMRIL6RP08887682

IntAct

108 interactions, top by confidence:

ABTypeScore
CFTRESYT2psi-mi:“MI:0914”(association)0.710
PDGFRBPIK3R2psi-mi:“MI:0914”(association)0.610
OSMRJAK1psi-mi:“MI:0914”(association)0.560
OSMRUBQLN2psi-mi:“MI:0915”(physical association)0.560
LHX2OSMRpsi-mi:“MI:0915”(physical association)0.560
OSMRGPRC5Dpsi-mi:“MI:0915”(physical association)0.560
SGTBOSMRpsi-mi:“MI:0915”(physical association)0.560
SLC10A6OSMRpsi-mi:“MI:0915”(physical association)0.560
OSMRJAK1psi-mi:“MI:0915”(physical association)0.560
FBXO2TMEM131Lpsi-mi:“MI:0914”(association)0.530
SLC31A1C2orf72psi-mi:“MI:0914”(association)0.530
MRAP2PODXLpsi-mi:“MI:0914”(association)0.530
DLK1SCAMP3psi-mi:“MI:0914”(association)0.530
TMEM200ASTX6psi-mi:“MI:0914”(association)0.530
MANSC1SMPD2psi-mi:“MI:0914”(association)0.530
CTLA4B4GALT5psi-mi:“MI:0914”(association)0.530
KCNE3RIOK3psi-mi:“MI:0914”(association)0.530
LGALS1PODXLpsi-mi:“MI:0914”(association)0.530
PCDHA3CYP51A1psi-mi:“MI:0914”(association)0.530
OSMRHSPA9psi-mi:“MI:0915”(physical association)0.500
OSMRNDUFS2psi-mi:“MI:0914”(association)0.500
OSMRNDUFS1psi-mi:“MI:0915”(physical association)0.500
OSMRNDUFS2psi-mi:“MI:0915”(physical association)0.500
OSMRATP5IF1psi-mi:“MI:0915”(physical association)0.460

BioGRID (75): OSMR (Affinity Capture-MS), OSMR (Affinity Capture-MS), ERBB2 (Co-localization), EGFR (Affinity Capture-Western), OSM (Reconstituted Complex), JAK1 (Affinity Capture-MS), ANKLE2 (Affinity Capture-MS), OSMR (Affinity Capture-RNA), OSMR (Protein-RNA), OSMR (Two-hybrid), OSMR (Two-hybrid), OSMR (Two-hybrid), UBQLN2 (Two-hybrid), SGTB (Two-hybrid), OSMR (Affinity Capture-MS)

ESM2 similar proteins: A2AED3, B0CLX4, B2RU80, B3DK56, B3EX02, E2RK30, F1NWE3, O14522, O70458, O70535, O88488, P08922, P08941, P08F94, P0C5E4, P17948, P20352, P23467, P28827, P28828, P35822, P35969, P35992, P42702, P42703, P53767, P97378, Q15262, Q2EY13, Q2EY15, Q2VWP7, Q2VWP9, Q589G5, Q5RFR6, Q5VJ70, Q5VTL7, Q5XNR9, Q62959, Q63132, Q65Z14

Diamond homologs: O70458, P42702, P42703, Q5XNR9, Q65Z14, Q99650, O70535, P97603, P97798, Q92859, B3EX02

SIGNOR signaling

2 interactions.

AEffectBMechanism
IL31up-regulatesOSMRbinding
OSMup-regulatesOSMRbinding

Disease & clinical

Clinical variants and AI predictions

ClinVar

216 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic3
Likely pathogenic1
Uncertain significance134
Likely benign25
Benign13

Top pathogenic / likely-pathogenic (4)

Variant IDHGVSClassification
30220NM_003999.3(OSMR):c.1940A>T (p.Asp647Val)Pathogenic
30222NM_003999.3(OSMR):c.2090A>C (p.Lys697Thr)Pathogenic
7809NM_003999.3(OSMR):c.1853G>C (p.Gly618Ala)Pathogenic
7808NM_003999.3(OSMR):c.2072T>C (p.Ile691Thr)Likely pathogenic

SpliceAI

3778 predictions. Top by Δscore:

VariantEffectΔscore
5:38876199:A:AGacceptor_gain1.0000
5:38876200:G:GGacceptor_gain1.0000
5:38881755:G:GTdonor_gain1.0000
5:38881762:GTG:Gdonor_gain1.0000
5:38883825:A:AGacceptor_gain1.0000
5:38883826:G:GGacceptor_gain1.0000
5:38883826:GT:Gacceptor_gain1.0000
5:38883826:GTA:Gacceptor_gain1.0000
5:38883826:GTAC:Gacceptor_gain1.0000
5:38883826:GTACA:Gacceptor_gain1.0000
5:38884112:G:GGdonor_gain1.0000
5:38885341:AT:Aacceptor_gain1.0000
5:38885342:T:Gacceptor_gain1.0000
5:38885445:G:GAdonor_gain1.0000
5:38885480:GAATC:Gdonor_gain1.0000
5:38885485:G:GGdonor_gain1.0000
5:38904342:T:Aacceptor_gain1.0000
5:38904500:GCTG:Gdonor_gain1.0000
5:38917544:A:AGacceptor_gain1.0000
5:38917545:G:GAacceptor_gain1.0000
5:38919061:CA:Cdonor_gain1.0000
5:38919063:G:GGdonor_gain1.0000
5:38931876:C:CAacceptor_gain1.0000
5:38931881:A:AGacceptor_gain1.0000
5:38931882:G:GGacceptor_gain1.0000
5:38931882:GCCTC:Gacceptor_gain1.0000
5:38931962:GTG:Gdonor_gain1.0000
5:38932458:TCTA:Tacceptor_loss1.0000
5:38932460:TAG:Tacceptor_loss1.0000
5:38932461:A:AGacceptor_gain1.0000

AlphaMissense

6508 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
5:38885416:G:CW257C0.994
5:38885416:G:TW257C0.994
5:38885414:T:AW257R0.989
5:38885414:T:CW257R0.989
5:38885408:T:AC255S0.986
5:38885409:G:CC255S0.986
5:38904461:T:AW415R0.985
5:38904461:T:CW415R0.985
5:38876281:T:AW52R0.982
5:38876281:T:CW52R0.982
5:38904463:G:CW415C0.981
5:38904463:G:TW415C0.981
5:38885378:T:AC245S0.979
5:38885379:G:CC245S0.979
5:38904432:G:CR405P0.977
5:38924486:G:CW645C0.977
5:38924486:G:TW645C0.977
5:38881665:T:CC107R0.976
5:38881665:T:AC107S0.974
5:38881666:G:CC107S0.974
5:38885408:T:CC255R0.974
5:38886128:T:CL310P0.974
5:38884051:T:AC215S0.973
5:38884052:G:CC215S0.973
5:38883909:T:GC167W0.972
5:38885378:T:CC245R0.972
5:38885379:G:AC245Y0.972
5:38903947:T:AW353R0.972
5:38903947:T:CW353R0.972
5:38921670:G:CW547C0.971

dbSNP variants (sampled 300 via entrez): RS1000032944 (5:38865979 C>T), RS1000087677 (5:38910764 A>G), RS1000122568 (5:38864415 T>G), RS1000154714 (5:38916201 G>A,T), RS1000156871 (5:38909408 A>G), RS1000168682 (5:38853186 A>C), RS1000175351 (5:38934282 A>G), RS1000203057 (5:38934544 C>G,T), RS1000209882 (5:38845654 G>A), RS1000220553 (5:38914443 C>T), RS1000239470 (5:38845849 C>G,T), RS1000245036 (5:38866511 T>A,G), RS1000245741 (5:38846134 C>G,T), RS1000269622 (5:38903152 A>G), RS1000297260 (5:38890922 G>T)

Disease associations

OMIM: gene MIM:601743 | disease phenotypes: MIM:105250

GenCC curated gene-disease

DiseaseClassificationInheritance
amyloidosis, primary localized cutaneous, 1StrongAutosomal dominant
familial primary localized cutaneous amyloidosisSupportiveAutosomal dominant

Mondo (2): amyloidosis, primary localized cutaneous, 1 (MONDO:0024522), familial primary localized cutaneous amyloidosis (MONDO:0007101)

Orphanet (1): Familial primary localized cutaneous amyloidosis (Orphanet:353220)

HPO phenotypes

7 total (7 of 7 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000958Dry skin
HP:0000989Pruritus
HP:0011463Childhood onset
HP:0012309Cutaneous amyloidosis
HP:0040189Scaling skin
HP:0100725Lichenification

GWAS associations

24 associations (top):

StudyTraitp-value
GCST001762_699Obesity-related traits8.000000e-07
GCST002868_9Response to serotonin reuptake inhibitors in major depressive disorder4.000000e-06
GCST003043_72Inflammatory bowel disease2.000000e-20
GCST003044_153Crohn’s disease2.000000e-16
GCST003045_99Ulcerative colitis9.000000e-12
GCST003253_15Microalbuminuria8.000000e-06
GCST003518_45Daytime sleep phenotypes3.000000e-06
GCST003542_52Night sleep phenotypes3.000000e-06
GCST003542_80Night sleep phenotypes4.000000e-06
GCST004131_99Inflammatory bowel disease5.000000e-10
GCST004132_42Crohn’s disease2.000000e-07
GCST004133_41Ulcerative colitis4.000000e-06
GCST005537_24Chronic inflammatory diseases (ankylosing spondylitis, Crohn’s disease, psoriasis, primary sclerosing cholangitis, ulcerative colitis) (pleiotropy)8.000000e-15
GCST007650_1Postoperative survival time in hepatocellular carcinoma1.000000e-32
GCST007731_5Postoperative survival time in hepatocellular carcinoma1.000000e-32
GCST009425_1Central retinal vein equivalent7.000000e-07
GCST010083_131Hemoglobin levels1.000000e-09
GCST90002383_205Hematocrit2.000000e-14
GCST90002384_104Hemoglobin3.000000e-14
GCST90002385_270High light scatter reticulocyte count8.000000e-12
GCST90002386_17High light scatter reticulocyte percentage of red cells2.000000e-14
GCST90002386_18High light scatter reticulocyte percentage of red cells9.000000e-15
GCST90002387_103Immature fraction of reticulocytes7.000000e-14
GCST90002406_160Reticulocyte fraction of red cells8.000000e-10

EFO canonical traits (8, from GWAS)

EFO IDTrait name
EFO:0005116urinary metabolite measurement
EFO:0005658response to selective serotonin reuptake inhibitor
EFO:0007828daytime rest measurement
EFO:0000638overall survival
EFO:0010554retinal vasculature measurement
EFO:0004509hemoglobin measurement
EFO:0004348hematocrit
EFO:0007986reticulocyte count

MeSH disease descriptors (1)

DescriptorNameTree numbers
C562643amyloidosis IX (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL4630885 (SINGLE PROTEIN)

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB variants

2 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs1239344OSMR0.000
rs74378198OSMR0.000

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: catalytic receptor — IL-6 receptor family

CTD chemical–gene interactions

55 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Benzo(a)pyreneincreases expression4
Aflatoxin B1affects expression, increases expression4
Irinotecanincreases expression, decreases response to substance2
Acetaminophendecreases expression, increases expression2
Copperaffects binding, increases expression2
Estradiolaffects cotreatment, increases expression, decreases expression2
Nickelincreases expression2
Phenylmercuric Acetateaffects cotreatment, increases expression2
Tobacco Smoke Pollutionincreases expression2
7,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxidedecreases expression2
Cyclosporineincreases expression2
aristolochic acid Idecreases expression1
dicrotophosincreases expression1
methylmercuric chlorideincreases expression1
bisphenol Aincreases expression1
2,2’-methylenebis(4-methyl-6-tert-butylphenol)affects expression, affects response to substance1
ethyl-p-hydroxybenzoateincreases expression1
mono-(2-ethylhexyl)phthalatedecreases expression1
sodium arsenitedecreases expression1
doxifluridinedecreases response to substance1
ciglitazoneaffects binding, increases expression1
di-n-butylphosphoric acidaffects expression1
perfluorooctane sulfonic acidincreases expression1
2-palmitoylglycerolincreases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, increases expression1
candoxindecreases expression1
dorsomorphinaffects cotreatment, increases expression1
incobotulinumtoxinAincreases expression1
Gefitinibaffects response to substance1
Resveratrolaffects cotreatment, decreases expression1

Cellosaurus cell lines

7 cell lines: 4 cancer cell line, 2 transformed cell line, 1 embryonic stem cell

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B1ZKAbcam HeLa OSMR KOCancer cell lineFemale
CVCL_B5QNWAe009-A-82Embryonic stem cellFemale
CVCL_D7WBUbigene A-549 OSMR KOCancer cell lineMale
CVCL_D8RUUbigene HCT 116 OSMR KOCancer cell lineMale
CVCL_D9LXUbigene HEK293 OSMR KOTransformed cell lineFemale
CVCL_E0JJUbigene HeLa OSMR KOCancer cell lineFemale
CVCL_E8EGHEK-Blue IL-31Transformed cell lineFemale

Clinical trials (associated diseases)

8 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT07052214PHASE3RECRUITINGPSMA PET Combined With MRI for the Detection of PCa
NCT04680130Not specifiedENROLLING_BY_INVITATIONClinico-Pathologic-Genetic-Imaging Study of Neurodegenerative and Related Disorders
NCT04929054Not specifiedUNKNOWNPCR Based CEUS in BI RADS 4A Nodules
NCT05688371Not specifiedUNKNOWNDexmedetomidine Plus Low Dose Morphine Versus Standard Dose of Morphine in PCA in Children .
NCT05845281Not specifiedCOMPLETEDComparison of Erector Spinae Plane Block and Intravenous Patient-controlled Analgesia in Percutaneous Nephrolithotomy
NCT06820190Not specifiedRECRUITINGAnalgesic Efficacy of Multiple Mid-Transverse Process to Pleura (MTP) Block and PCA in Idiopathic Scoliosis Patients Undergoing Posterior Spinal Fusion
NCT07051109Not specifiedRECRUITINGDual-chamber Patient-controlled Analgesia for Postoperative Recovery
NCT01164241Not specifiedCOMPLETEDNatural History of Severe Allergic Inflammation and Reactions