OXR1
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Also known as TLDC3
Summary
OXR1 (oxidation resistance 1, HGNC:15822) is a protein-coding gene on chromosome 8q23.1, encoding Oxidation resistance protein 1 (Q8N573). May be involved in protection from oxidative damage.
Predicted to enable oxidoreductase activity. Predicted to be involved in response to oxidative stress. Predicted to act upstream of or within several processes, including adult walking behavior; negative regulation of cellular response to oxidative stress; and negative regulation of peptidyl-cysteine S-nitrosylation. Located in mitochondrion. Implicated in cerebellar hyplasia/atrophy, epilepsy, and global developmental delay.
Source: NCBI Gene 55074 — RefSeq curated summary.
At a glance
- Gene–disease (curated): isolated cerebellar hypoplasia/agenesis (Strong, GenCC) — +1 more curated relationship
- Clinical variants (ClinVar): 180 total — 2 pathogenic
- Phenotypes (HPO): 11
- Druggable target: yes
- MANE Select transcript:
NM_001198533
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:15822 |
| Approved symbol | OXR1 |
| Name | oxidation resistance 1 |
| Location | 8q23.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | TLDC3 |
| Ensembl gene | ENSG00000164830 |
| Ensembl biotype | protein_coding |
| OMIM | 605609 |
| Entrez | 55074 |
Gene structure
Transcript identifiers
Ensembl transcripts: 19 — 10 protein_coding, 6 protein_coding_CDS_not_defined, 2 nonsense_mediated_decay, 1 retained_intron
ENST00000297447, ENST00000312046, ENST00000435082, ENST00000438229, ENST00000442977, ENST00000449762, ENST00000497705, ENST00000517455, ENST00000517566, ENST00000517686, ENST00000519415, ENST00000521369, ENST00000521592, ENST00000521864, ENST00000521963, ENST00000531443, ENST00000577661, ENST00000658832, ENST00000661818
RefSeq mRNA: 6 — MANE Select: NM_001198533
NM_001198532, NM_001198533, NM_001198534, NM_001198535, NM_018002, NM_181354
CCDS: CCDS47909, CCDS56547, CCDS56548, CCDS56549, CCDS56550, CCDS6304
Canonical transcript exons
ENST00000517566 — 17 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001087849 | 106713823 | 106713985 |
| ENSE00001087855 | 106710622 | 106710790 |
| ENSE00001822300 | 106750806 | 106752694 |
| ENSE00003479118 | 106737520 | 106737600 |
| ENSE00003497307 | 106739458 | 106739583 |
| ENSE00003505994 | 106684246 | 106684359 |
| ENSE00003516339 | 106683199 | 106683306 |
| ENSE00003530747 | 106692728 | 106692877 |
| ENSE00003601519 | 106702906 | 106703090 |
| ENSE00003615809 | 106745789 | 106745862 |
| ENSE00003661621 | 106742222 | 106742317 |
| ENSE00003675755 | 106740343 | 106740495 |
| ENSE00003713479 | 106359476 | 106359636 |
| ENSE00003726003 | 106706382 | 106707145 |
| ENSE00003730546 | 106679210 | 106679292 |
| ENSE00003751246 | 106518943 | 106519139 |
| ENSE00003913757 | 106270190 | 106270367 |
Expression profiles
Bgee: expression breadth ubiquitous, 287 present calls, max score 99.00.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 42.8757 / max 1021.5665, expressed in 1817 samples.
FANTOM5 promoters (21 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 90239 | 16.6859 | 1767 |
| 90216 | 16.6550 | 1444 |
| 90243 | 5.4522 | 1323 |
| 90223 | 1.0630 | 117 |
| 90241 | 0.5267 | 181 |
| 90215 | 0.4402 | 131 |
| 90218 | 0.3875 | 196 |
| 90242 | 0.3218 | 144 |
| 90240 | 0.2884 | 129 |
| 90217 | 0.2639 | 114 |
Top tissues by expression
291 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| pons | UBERON:0000988 | 99.00 | gold quality |
| calcaneal tendon | UBERON:0003701 | 97.92 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 97.90 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 97.85 | gold quality |
| sperm | CL:0000019 | 97.82 | gold quality |
| adrenal tissue | UBERON:0018303 | 97.79 | gold quality |
| dorsal root ganglion | UBERON:0000044 | 97.55 | gold quality |
| seminal vesicle | UBERON:0000998 | 97.15 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 97.12 | gold quality |
| corpus epididymis | UBERON:0004359 | 97.00 | gold quality |
| prefrontal cortex | UBERON:0000451 | 96.75 | gold quality |
| colonic epithelium | UBERON:0000397 | 96.49 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 96.04 | gold quality |
| dorsolateral prefrontal cortex | UBERON:0009834 | 95.90 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 95.83 | gold quality |
| frontal cortex | UBERON:0001870 | 95.81 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 95.75 | gold quality |
| right adrenal gland | UBERON:0001233 | 95.73 | gold quality |
| parietal lobe | UBERON:0001872 | 95.52 | gold quality |
| postcentral gyrus | UBERON:0002581 | 95.49 | gold quality |
| caput epididymis | UBERON:0004358 | 95.44 | gold quality |
| Brodmann (1909) area 9 | UBERON:0013540 | 95.42 | gold quality |
| neocortex | UBERON:0001950 | 95.34 | gold quality |
| adrenal gland | UBERON:0002369 | 95.10 | gold quality |
| left adrenal gland | UBERON:0001234 | 95.01 | gold quality |
| adrenal cortex | UBERON:0001235 | 94.97 | gold quality |
| tibia | UBERON:0000979 | 94.87 | gold quality |
| occipital lobe | UBERON:0002021 | 94.73 | gold quality |
| cerebral cortex | UBERON:0000956 | 94.72 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 94.69 | gold quality |
Single-cell (SCXA)
Detected in 6 experiment(s), a significant marker in 5.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9154 | yes | 780.11 |
| E-HCAD-35 | yes | 77.51 |
| E-CURD-119 | yes | 42.41 |
| E-CURD-112 | yes | 15.53 |
| E-MTAB-7316 | no | 33.71 |
| E-ANND-3 | no | 0.00 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
167 targeting OXR1, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-30A-5P | 100.00 | 76.31 | 3233 |
| HSA-MIR-30B-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30C-5P | 100.00 | 76.29 | 3248 |
| HSA-MIR-30D-5P | 100.00 | 76.32 | 3233 |
| HSA-MIR-30E-5P | 100.00 | 76.32 | 3242 |
| HSA-MIR-3064-3P | 100.00 | 70.09 | 1254 |
| HSA-MIR-200B-3P | 100.00 | 73.31 | 2693 |
| HSA-MIR-200C-3P | 100.00 | 73.35 | 2685 |
| HSA-MIR-429 | 100.00 | 73.44 | 2698 |
| HSA-MIR-1277-5P | 100.00 | 73.95 | 5056 |
| HSA-MIR-656-3P | 100.00 | 72.15 | 2788 |
| HSA-LET-7A-3P | 100.00 | 74.03 | 3932 |
| HSA-LET-7B-3P | 100.00 | 74.08 | 3913 |
| HSA-LET-7F-1-3P | 100.00 | 74.02 | 3928 |
| HSA-MIR-98-3P | 100.00 | 74.08 | 3907 |
| HSA-MIR-3667-3P | 99.99 | 67.17 | 1636 |
| HSA-MIR-12121 | 99.99 | 66.64 | 255 |
| HSA-MIR-4789-3P | 99.99 | 70.75 | 2484 |
| HSA-MIR-5696 | 99.98 | 72.36 | 4487 |
| HSA-MIR-4775 | 99.98 | 75.00 | 6394 |
| HSA-MIR-4482-3P | 99.98 | 72.50 | 3147 |
| HSA-MIR-4715-3P | 99.98 | 66.03 | 670 |
| HSA-MIR-3065-5P | 99.97 | 71.56 | 3281 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-1250-3P | 99.96 | 70.04 | 4038 |
| HSA-MIR-4666A-3P | 99.96 | 71.71 | 3434 |
| HSA-MIR-548AJ-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-548X-3P | 99.96 | 73.38 | 5345 |
| HSA-MIR-590-3P | 99.96 | 74.34 | 6478 |
| HSA-MIR-3912-5P | 99.95 | 66.11 | 925 |
Literature-anchored findings (GeneRIF, showing 16)
- Data show that human and yeast oxidation resistance 1 (OXR1) genes are induced by heat and oxidative stress and that their proteins localize to the mitochondria and function to protect against oxidative damage. (PMID:15060142)
- human OXR1 is capable of reducing the DNA damaging effects of reactive oxygen species when expressed in bacteria, indicating the protein has an activity that can contribute to oxidation resistance. (PMID:17391516)
- The protein segment encoded by exon 8 plays an important role in the anti-oxidative function of the human OXR1 protein. (PMID:22873401)
- OXR1 upregulates the expression of antioxidant genes via the p21 signaling pathway to suppress hydrogen peroxide-induced oxidative stress and maintain mtDNA integrity. (PMID:25236744)
- Oxr1 serves as a potential therapeutic target for ALS and other neurodegenerative disorders characterized by TDP-43 or FUS pathology. (PMID:25792726)
- OXR1 may act as a sensor of cellular oxidative stress to regulate the transcriptional networks required to detoxify reactive oxygen species and modulate cell cycle and apoptosis. (PMID:26616534)
- findings provide new insights into the mechanism by which senescent cells are highly resistant to oxidative stress and suggest that OXR1 is a novel senolytic target that can be further exploited for the development of new senolytic agents (PMID:29766639)
- The results of the present study indicated that sevoflurane exerts its neurotoxic effect by regulating the hsamiR302e/OXR1 axis. Therefore, the manipulation of the hsamiR302e/OXR1 pathway will be useful for preventing sevofluraneinduced neurotoxicity. (PMID:30221705)
- Low OXR1 expression is associated with the development of esophageal squamous cell carcinoma. (PMID:30852977)
- MiR-616 promotes the progression of pancreatic carcinoma by targeting OXR1. (PMID:31502810)
- Over-expression of Oxr1 was able to delay neuromuscular abnormalities in the hSOD1G93A amyotrophic lateral sclerosis mouse model. (PMID:31642482)
- Loss of OXR1 is Associated with an Autosomal-Recessive Neurological Disease with Cerebellar Atrophy and Lysosomal Dysfunction. (PMID:31785787)
- Oxidation resistance 1 prevents genome instability through maintenance of G2/M arrest in gamma-ray-irradiated cells. (PMID:31845986)
- A novel recessive mutation in OXR1 is identified in patient with hearing loss recapitulated by the knockdown zebrafish. (PMID:36130215)
- A loss-of-function mutation in human Oxidation Resistance 1 disrupts the spatial-temporal regulation of histone arginine methylation in neurodevelopment. (PMID:37773136)
- OXR1 maintains the retromer to delay brain aging under dietary restriction. (PMID:38212606)
Cross-species orthologs
3 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | oxr1b | ENSDARG00000063310 |
| mus_musculus | Oxr1 | ENSMUSG00000022307 |
| rattus_norvegicus | Oxr1 | ENSRNOG00000056487 |
Paralogs (3): TLDC2 (ENSG00000101342), NCOA7 (ENSG00000111912), MEAK7 (ENSG00000140950)
Protein
Protein identifiers
Oxidation resistance protein 1 — Q8N573 (reviewed: Q8N573)
All UniProt accessions (6): C9JY63, E5RFD1, E5RII8, E9PLW2, H0YC07, Q8N573
UniProt curated annotations — full annotation on UniProt →
Function. May be involved in protection from oxidative damage.
Subcellular location. Mitochondrion.
Disease relevance. Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay (CHEGDD) [MIM:213000] An autosomal recessive neurodevelopmental disorder characterized by infantile onset of hypotonia, global developmental delay, delayed walking, and severely impaired intellectual development with profound speech delay. Patients manifest cerebellar atrophy and childhood-onset epilepsy. The disease is caused by variants affecting the gene represented in this entry.
Induction. By heat shock and oxidative stress.
Similarity. Belongs to the OXR1 family.
Isoforms (8)
| UniProt ID | Names | Canonical? |
|---|---|---|
| Q8N573-1 | 1 | yes |
| Q8N573-2 | 2 | |
| Q8N573-3 | 3 | |
| Q8N573-4 | 4 | |
| Q8N573-5 | 5 | |
| Q8N573-6 | 6 | |
| Q8N573-7 | 7 | |
| Q8N573-8 | 8 |
RefSeq proteins (6): NP_001185461, NP_001185462, NP_001185463, NP_001185464, NP_060472, NP_851999 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006571 | TLDc_dom | Domain |
| IPR018392 | LysM | Domain |
| IPR036779 | LysM_dom_sf | Homologous_superfamily |
Pfam: PF01476, PF07534
UniProt features (48 total): splice variant 13, modified residue 11, compositionally biased region 6, region of interest 5, sequence conflict 5, sequence variant 4, domain 3, chain 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q8N573-F1 | 60.31 | 0.25 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (11): 91, 119, 201, 202, 204, 294, 334, 336, 341, 346, 496
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 290 (showing top):
GSE45365_CD8A_DC_VS_CD11B_DC_IFNAR_KO_DN, WENDT_COHESIN_TARGETS_UP, TGGTGCT_MIR29A_MIR29B_MIR29C, GOBP_NEGATIVE_REGULATION_OF_NEURON_APOPTOTIC_PROCESS, RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP, AAGCAAT_MIR137, GOBP_BEHAVIOR, GCANCTGNY_MYOD_Q6, GOBP_ADULT_BEHAVIOR, GOBP_NEGATIVE_REGULATION_OF_RESPONSE_TO_OXIDATIVE_STRESS, GOBP_ADULT_LOCOMOTORY_BEHAVIOR, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, MODULE_503, MONNIER_POSTRADIATION_TUMOR_ESCAPE_UP, ONKEN_UVEAL_MELANOMA_UP
GO Biological Process (6): response to oxidative stress (GO:0006979), adult walking behavior (GO:0007628), negative regulation of neuron apoptotic process (GO:0043524), neuron apoptotic process (GO:0051402), cellular response to hydroperoxide (GO:0071447), negative regulation of cellular response to oxidative stress (GO:1900408)
GO Molecular Function (2): oxidoreductase activity (GO:0016491), protein binding (GO:0005515)
GO Cellular Component (3): nucleus (GO:0005634), nucleolus (GO:0005730), mitochondrion (GO:0005739)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cellular response to oxidative stress | 2 |
| intracellular membrane-bounded organelle | 2 |
| response to stress | 1 |
| adult locomotory behavior | 1 |
| walking behavior | 1 |
| negative regulation of apoptotic process | 1 |
| regulation of neuron apoptotic process | 1 |
| neuron apoptotic process | 1 |
| apoptotic process | 1 |
| response to hydroperoxide | 1 |
| cellular response to oxygen-containing compound | 1 |
| negative regulation of cellular process | 1 |
| regulation of cellular response to oxidative stress | 1 |
| negative regulation of response to oxidative stress | 1 |
| catalytic activity | 1 |
| binding | 1 |
| nuclear lumen | 1 |
| intracellular membraneless organelle | 1 |
| cytoplasm | 1 |
Protein interactions and networks
STRING
932 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| OXR1 | HCRT | O43612 | 926 |
| OXR1 | HCRTR1 | O43613 | 793 |
| OXR1 | HCRTR2 | O43614 | 693 |
| OXR1 | OR13H1 | Q8NG92 | 507 |
| OXR1 | ATP6V1B1 | P15313 | 499 |
| OXR1 | FOS | P01100 | 472 |
| OXR1 | PRMT5 | O14744 | 454 |
| OXR1 | PRMT1 | Q99873 | 450 |
| OXR1 | PRDX2 | P31945 | 443 |
| OXR1 | TMEM150A | Q86TG1 | 434 |
| OXR1 | KEAP1 | Q14145 | 433 |
| OXR1 | CDC16 | Q13042 | 403 |
| OXR1 | DMXL1 | Q9Y485 | 403 |
| OXR1 | GPX7 | Q96SL4 | 384 |
| OXR1 | OXSR1 | O95747 | 366 |
IntAct
7 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| OXR1 | RFC1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| OXR1 | psi-mi:“MI:0915”(physical association) | 0.370 | |
| hspa1a_hspa1b_human-1 | SHTN1 | psi-mi:“MI:0914”(association) | 0.350 |
| psi-mi:“MI:0914”(association) | 0.350 | ||
| CLIC6 | OXR1 | psi-mi:“MI:0915”(physical association) | 0.000 |
BioGRID (57): OXR1 (Two-hybrid), OXR1 (Affinity Capture-MS), OXR1 (Affinity Capture-MS), OXR1 (Affinity Capture-MS), OXR1 (Affinity Capture-MS), OXR1 (Synthetic Lethality), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS), OXR1 (Proximity Label-MS)
ESM2 similar proteins: A0A0R4IBK5, A0JP43, A1A5R8, A2VCV0, B8QB46, P62283, P62285, P62286, P62287, P62288, P62289, P62290, P62291, P62292, P62293, P62294, P62296, P62297, Q06190, Q08AX9, Q12830, Q2T9I9, Q4KLH3, Q4VA55, Q5RA75, Q5TC84, Q5ZMS4, Q65Z40, Q66H73, Q68FF0, Q6DFV7, Q6NSI8, Q6PG04, Q6PUR7, Q6TXG9, Q7T3T8, Q7Z5K2, Q8CJ27, Q8IZT6, Q8K4P8
Diamond homologs: A0PJX2, A2ACG1, A5PKL1, A8KBE0, B4F6Q9, O14284, Q08952, Q0IID2, Q1LWV7, Q3UUG6, Q4KMM3, Q4V8B0, Q5ZJX5, Q5ZMS4, Q6C443, Q6CMK8, Q6DDZ9, Q6DFV7, Q6FSN5, Q6P9B6, Q755A3, Q874Z5, Q8K0P3, Q8N573, Q8NI08, Q9ULP9, Q9VIH7, Q5AEM5, P0CP42, P0CP43, Q6ZZF5, Q7S4P1, Q4I8S2, Q4WX99, Q5B8X6, A1A5K6, Q29RJ2, Q6BJM5, Q08CX5
SIGNOR signaling
0 interactions.
Disease & clinical
Clinical variants and AI predictions
ClinVar
180 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 2 |
| Likely pathogenic | 0 |
| Uncertain significance | 120 |
| Likely benign | 21 |
| Benign | 2 |
Top pathogenic / likely-pathogenic (2)
| Variant ID | HGVS | Classification |
|---|---|---|
| 694396 | NM_001198533.2(OXR1):c.1100C>G (p.Ser367Ter) | Pathogenic |
| 694397 | NM_001198533.2(OXR1):c.2163+1G>T | Pathogenic |
SpliceAI
3143 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 8:106676154:ATTT:A | acceptor_gain | 1.0000 |
| 8:106679205:CCCAG:C | acceptor_loss | 1.0000 |
| 8:106679206:CCA:C | acceptor_loss | 1.0000 |
| 8:106679207:CA:C | acceptor_loss | 1.0000 |
| 8:106679208:A:AG | acceptor_gain | 1.0000 |
| 8:106679209:G:GA | acceptor_gain | 1.0000 |
| 8:106679209:GA:G | acceptor_gain | 1.0000 |
| 8:106679209:GAC:G | acceptor_gain | 1.0000 |
| 8:106679209:GACA:G | acceptor_gain | 1.0000 |
| 8:106679209:GACAC:G | acceptor_gain | 1.0000 |
| 8:106679282:T:TG | donor_gain | 1.0000 |
| 8:106679291:CT:C | donor_gain | 1.0000 |
| 8:106679292:TGTAA:T | donor_loss | 1.0000 |
| 8:106679293:G:A | donor_loss | 1.0000 |
| 8:106679293:G:GG | donor_gain | 1.0000 |
| 8:106679294:T:TC | donor_loss | 1.0000 |
| 8:106683196:CA:C | acceptor_loss | 1.0000 |
| 8:106683272:A:AG | donor_gain | 1.0000 |
| 8:106684233:T:TA | acceptor_gain | 1.0000 |
| 8:106684242:A:AG | acceptor_gain | 1.0000 |
| 8:106684242:ACAG:A | acceptor_gain | 1.0000 |
| 8:106684243:C:G | acceptor_gain | 1.0000 |
| 8:106684243:CA:C | acceptor_loss | 1.0000 |
| 8:106684244:A:AG | acceptor_gain | 1.0000 |
| 8:106684244:A:AT | acceptor_loss | 1.0000 |
| 8:106684244:AG:A | acceptor_gain | 1.0000 |
| 8:106684245:G:GT | acceptor_gain | 1.0000 |
| 8:106684245:GG:G | acceptor_gain | 1.0000 |
| 8:106684245:GGT:G | acceptor_gain | 1.0000 |
| 8:106684245:GGTT:G | acceptor_gain | 1.0000 |
AlphaMissense
5768 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 8:106683230:C:A | A113D | 1.000 |
| 8:106683260:T:C | L123P | 1.000 |
| 8:106684256:T:A | V142D | 1.000 |
| 8:106692839:T:C | F214L | 1.000 |
| 8:106692841:T:A | F214L | 1.000 |
| 8:106692841:T:G | F214L | 1.000 |
| 8:106702925:T:C | L233P | 1.000 |
| 8:106702928:T:C | L234P | 1.000 |
| 8:106710772:T:C | F593S | 1.000 |
| 8:106740382:T:A | W736R | 1.000 |
| 8:106740382:T:C | W736R | 1.000 |
| 8:106740467:T:C | L764P | 1.000 |
| 8:106742229:G:A | G776D | 1.000 |
| 8:106745798:T:A | W809R | 1.000 |
| 8:106745798:T:C | W809R | 1.000 |
| 8:106750822:T:A | W836R | 1.000 |
| 8:106750822:T:C | W836R | 1.000 |
| 8:106750826:T:C | L837P | 1.000 |
| 8:106750847:G:A | G844E | 1.000 |
| 8:106750927:T:A | W871R | 1.000 |
| 8:106750927:T:C | W871R | 1.000 |
| 8:106683200:T:A | V103D | 0.999 |
| 8:106683260:T:A | L123H | 0.999 |
| 8:106683260:T:G | L123R | 0.999 |
| 8:106683273:T:A | N127K | 0.999 |
| 8:106683273:T:G | N127K | 0.999 |
| 8:106683293:T:A | V134D | 0.999 |
| 8:106684250:T:C | L140P | 0.999 |
| 8:106692840:T:C | F214S | 0.999 |
| 8:106692840:T:G | F214C | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000008391 (8:106673282 T>C,G), RS1000014291 (8:106674117 CT>C), RS1000017464 (8:106581426 A>G), RS1000022249 (8:106488888 T>G), RS1000024106 (8:106516296 T>G), RS1000026267 (8:106399544 T>C), RS1000028896 (8:106358271 C>A,T), RS1000035126 (8:106406108 G>A), RS1000042376 (8:106698670 C>G), RS1000045678 (8:106411414 G>T), RS1000048279 (8:106439678 A>G,T), RS1000048636 (8:106636433 T>C), RS1000049684 (8:106544071 A>G), RS1000055112 (8:106715138 T>A), RS1000080095 (8:106674907 A>G,T)
Disease associations
OMIM: gene MIM:605609 | disease phenotypes: MIM:213000
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| isolated cerebellar hypoplasia/agenesis | Strong | Autosomal recessive |
| sensorineural hearing loss disorder | Strong | Autosomal recessive |
Mondo (3): isolated cerebellar hypoplasia/agenesis (MONDO:0008939), hearing loss disorder (MONDO:0005365), sensorineural hearing loss disorder (MONDO:0020678)
Orphanet (2): Isolated cerebellar agenesis (Orphanet:1398), Cerebellar hypoplasia-tapetoretinal degeneration syndrome (Orphanet:2246)
HPO phenotypes
11 total (11 of 11 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000007 | Autosomal recessive inheritance |
| HP:0000639 | Nystagmus |
| HP:0000750 | Delayed speech and language development |
| HP:0001249 | Intellectual disability |
| HP:0001250 | Seizure |
| HP:0001251 | Ataxia |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001321 | Cerebellar hypoplasia |
| HP:0001337 | Tremor |
| HP:0002650 | Scoliosis |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D034381 | Hearing Loss | C09.218.458.341; C10.597.751.418.341; C23.888.592.763.393.341 |
| C562568 | Cerebellar Hypoplasia (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL4295901 (SINGLE PROTEIN)
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
58 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | decreases expression, decreases methylation, increases expression | 3 |
| Acetaminophen | increases expression | 2 |
| Benzo(a)pyrene | affects methylation | 2 |
| Aflatoxin B1 | decreases methylation, increases methylation | 2 |
| Palmitic Acid | affects cotreatment, increases expression, decreases phosphorylation | 2 |
| aristolochic acid I | decreases expression | 1 |
| GSK-J4 | increases expression | 1 |
| FR900359 | affects phosphorylation | 1 |
| dicrotophos | decreases expression | 1 |
| methylmercuric chloride | decreases expression | 1 |
| tris(1,3-dichloro-2-propyl)phosphate | increases expression | 1 |
| sodium arsenite | increases expression | 1 |
| cobaltous chloride | increases expression | 1 |
| zinc chromate | increases abundance, increases expression | 1 |
| benzo(e)pyrene | increases methylation | 1 |
| 1-nitropyrene | increases expression | 1 |
| cadmium sulfide | increases expression | 1 |
| vanadium pentoxide | decreases expression | 1 |
| chromium hexavalent ion | increases abundance, increases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| cylindrospermopsin | increases expression | 1 |
| CGP 52608 | affects binding, increases reaction | 1 |
| nutlin 3 | affects cotreatment, increases expression | 1 |
| ICG 001 | increases expression | 1 |
| Grape Seed Proanthocyanidins | affects cotreatment, increases expression | 1 |
| bisphenol S | increases methylation | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| 4-(4-((5-(4,5-dimethyl-2-nitrophenyl)-2-furanyl)methylene)-4,5-dihydro-3-methyl-5-oxo-1H-pyrazol-1-yl)benzoic acid | increases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Aerosols | decreases expression | 1 |
ChEMBL screening assays
2 unique, capped per target: 2 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL4233057 | Binding | Induction of OXR1 degradation in ionizing radiation induced human WI38 senescent cells at 5 uM after 24 hrs by Western blot analysis | Senolytic activity of piperlongumine analogues: Synthesis and biological evaluation. — Bioorg Med Chem |
Clinical trials (associated diseases)
384 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00205881 | PHASE4 | COMPLETED | Bilateral Benefit in Adult Users of the HiRes 90K Bionic Ear System |
| NCT00331539 | PHASE4 | UNKNOWN | Relationship Between Auto NRT and Behavioural T & C Levels With the Nucleus Freedom Cochlear Implant |
| NCT00424307 | PHASE4 | UNKNOWN | Bilateral Cochlear Implant Benefit in Young Children |
| NCT00765635 | PHASE4 | COMPLETED | Chlorobutanol, Potassium Carbonate, and Irrigation in Cerumen Removal |
| NCT03321006 | PHASE4 | COMPLETED | Treating Hearing Loss to Improve Mood and Cognition in Older Adults |
| NCT01655212 | PHASE3 | TERMINATED | Congenital Cytomegalovirus: Efficacy of Antiviral Treatment in a Randomized Controlled Trial |
| NCT02005822 | PHASE3 | COMPLETED | Congenital Cytomegalovirus: Efficacy of Antiviral Treatment |
| NCT03374514 | PHASE3 | UNKNOWN | Cochlear Electrical Impedance and the Effect of Topical Dexamethasone on Cochlear Implant Surgery |
| NCT01499901 | PHASE3 | WITHDRAWN | Comparison of the Bilateral Sequential and Simultaneous Cochlear Implantation in the Deaf Children |
| NCT02561091 | PHASE3 | COMPLETED | AM-111 in the Treatment of Acute Inner Ear Hearing Loss |
| NCT03331627 | PHASE3 | COMPLETED | Safety and Efficacy of STR001-IT and STR001-ER in Patients With SSHL |
| NCT05532657 | PHASE3 | ACTIVE_NOT_RECRUITING | ACHIEVE Brain Health Follow-Up Study |
| NCT02497690 | PHASE2 | COMPLETED | Effectiveness of Therapy Via Telemedicine Following Cochlear Implants |
| NCT03107871 | PHASE2 | ACTIVE_NOT_RECRUITING | Randomized Controlled Trial of Valganciclovir for Cytomegalovirus Infected Hearing Impaired Infants |
| NCT04120116 | PHASE2 | COMPLETED | FX-322 in Adults With Stable Sensorineural Hearing Loss |
| NCT05061758 | PHASE2 | WITHDRAWN | A Trial of LY3056480 in Patients With SNLH |
| NCT07364747 | PHASE2 | RECRUITING | Protective Effect of Acetylcysteine Against Cisplatinum-Induced Ototoxicity: A Randomized Controlled Trial |
| NCT00013455 | PHASE2 | COMPLETED | Quantifying Auditory Perceptual Learning Following Hearing Aid Fitting |
| NCT00323427 | PHASE2 | COMPLETED | Clinical Trial of the Living Well With Hearing Loss Workshop |
| NCT00552786 | PHASE2 | COMPLETED | Antioxidation Medication for Noise-induced Hearing Loss |
| NCT00802425 | PHASE2 | COMPLETED | Efficacy of AM-111 in Patients With Acute Sensorineural Hearing Loss |
| NCT01139281 | PHASE2 | COMPLETED | The Protective Effect of Ginkgo Biloba Extract on Cisplatin-induced Ototoxicity in Humans |
| NCT01451853 | PHASE2 | UNKNOWN | SPI-1005 for Prevention and Treatment of Chemotherapy Induced Hearing Loss |
| NCT01588925 | PHASE2 | COMPLETED | Hearing Preservation Using Dexamethasone and Hyaluronic Acid for Cochlear Implantation |
| NCT01773278 | PHASE2 | RECRUITING | Cholesterol and Antioxidant Treatment in Patients With Smith-Lemli-Opitz Syndrome (SLOS) |
| NCT02832128 | PHASE2 | COMPLETED | Evaluating Possible Improvement in Speech and Hearing Tests After 28 Days of Dosing of the Study Drug AUT00063 Compared to Placebo (QuicKfire) |
| NCT04915183 | PHASE2 | RECRUITING | Atorvastatin to Reduce Cisplatin-Induced Hearing Loss Among Individuals With Head and Neck Cancer |
| NCT05258773 | PHASE2 | COMPLETED | Evaluation of the Presence of SENS-401 in the Perilymph |
| NCT06340633 | PHASE2 | RECRUITING | SPI-1005 in Adults Receiving Cochlear Implant |
| NCT02259595 | PHASE1 | COMPLETED | Study to Determine the Safety, Tolerability, and Pharmacokinetic Profile of HPN-07 and HPN-07 Plus NAC |
| NCT00582946 | PHASE1 | COMPLETED | Wide-Bandwidth Open Canal Hearing Aid For Better Multitalker Speech Understanding |
| NCT00584155 | PHASE1 | WITHDRAWN | Protection From Cisplatin Ototoxicity by Lactated Ringers |
| NCT01206829 | PHASE1 | UNKNOWN | Hearing Impairment, Cognitive Therapy and Coping |
| NCT01256229 | PHASE1 | COMPLETED | Outcomes In Children With Developmental Delay And Deafness |
| NCT01343394 | PHASE1 | WITHDRAWN | Safety of Autologous Human Umbilical Cord Blood Mononuclear Fraction to Treat Acquired Hearing Loss in Children |
| NCT01452607 | PHASE1 | COMPLETED | Study to Evaluate the Safety and Pharmacokinetics of SPI-1005 |
| NCT04041440 | PHASE1 | COMPLETED | Speech Recognition Training in Children With Hearing Loss |
| NCT07218913 | PHASE1 | RECRUITING | Testing the Addition of Pedmark to Cisplatin Chemotherapy for Reducing Drug-Induced Ear Damage in Men With Stage II-III Metastatic Testicular Germ Cell Tumors |
| NCT02693704 | PHASE2/PHASE3 | COMPLETED | Evaluation of a Binaural Spatialization Method for Hearing Aids |
| NCT02882477 | PHASE2/PHASE3 | UNKNOWN | Treatment of Wolfram Syndrome Type 2 With the Chelator Deferiprone and Incretin Based Therapy |
Related Atlas pages
- Associated diseases: isolated cerebellar hypoplasia/agenesis, sensorineural hearing loss disorder
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): hearing loss disorder, isolated cerebellar hypoplasia/agenesis, sensorineural hearing loss disorder