P2RY12

gene
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Also known as P2Y12SP1999HORK3

Summary

P2RY12 (purinergic receptor P2Y12, HGNC:18124) is a protein-coding gene on chromosome 3q25.1, encoding P2Y purinoceptor 12 (Q9H244). Receptor for ADP and ATP coupled to G-proteins that inhibit the adenylyl cyclase second messenger system.

The product of this gene belongs to the family of G-protein coupled receptors. This family has several receptor subtypes with different pharmacological selectivity, which overlaps in some cases, for various adenosine and uridine nucleotides. This receptor is involved in platelet aggregation, and is a potential target for the treatment of thromboembolisms and other clotting disorders. Mutations in this gene are implicated in bleeding disorder, platelet type 8 (BDPLT8). Alternative splicing results in multiple transcript variants of this gene.

Source: NCBI Gene 64805 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): platelet-type bleeding disorder 8 (Definitive, ClinGen)
  • GWAS associations: 1
  • Clinical variants (ClinVar): 24 total — 1 pathogenic, 3 likely-pathogenic
  • Phenotypes (HPO): 8
  • Druggable target: yes — 11 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_022788

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:18124
Approved symbolP2RY12
Namepurinergic receptor P2Y12
Location3q25.1
Locus typegene with protein product
StatusApproved
AliasesP2Y12, SP1999, HORK3
Ensembl geneENSG00000169313
Ensembl biotypeprotein_coding
OMIM600515
Entrez64805

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 4 protein_coding, 1 retained_intron

ENST00000302632, ENST00000468596, ENST00000955805, ENST00000955806, ENST00000955807

RefSeq mRNA: 2 — MANE Select: NM_022788 NM_022788, NM_176876

CCDS: CCDS3159

Canonical transcript exons

ENST00000302632 — 3 exons

ExonStartEnd
ENSE00001157311151336843151338859
ENSE00001169257151340596151340760
ENSE00001813621151384692151384753

Expression profiles

Bgee: expression breadth ubiquitous, 204 present calls, max score 97.12.

FANTOM5 (CAGE): breadth broad, TPM avg 3.0864 / max 331.6989, expressed in 240 samples.

FANTOM5 promoters (11 alternative TSS)

Promoter IDTPM avgSamples expressed
451611.9173233
451520.742086
451540.113852
451530.092754
451510.077342
451500.067537
451570.02881
451550.01491
2029830.01345
451580.00941

Top tissues by expression

249 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
inferior vagus X ganglionUBERON:000536397.12gold quality
superior vestibular nucleusUBERON:000722796.60gold quality
ventral tegmental areaUBERON:000269194.74gold quality
subthalamic nucleusUBERON:000190693.92gold quality
medulla oblongataUBERON:000189692.95gold quality
Brodmann (1909) area 46UBERON:000648392.22gold quality
dorsal plus ventral thalamusUBERON:000189791.45gold quality
monocyteCL:000057690.55gold quality
corpus callosumUBERON:000233689.35gold quality
dorsal root ganglionUBERON:000004489.32gold quality
leukocyteCL:000073889.22gold quality
midbrainUBERON:000189188.67gold quality
spinal cordUBERON:000224088.35gold quality
male germ line stem cell (sensu Vertebrata) in testisCL:0000089 ∩ UBERON:000047388.10gold quality
substantia nigraUBERON:000203887.86gold quality
C1 segment of cervical spinal cordUBERON:000646987.68gold quality
trigeminal ganglionUBERON:000167587.66gold quality
substantia nigra pars reticulataUBERON:000196686.40gold quality
prefrontal cortexUBERON:000045184.69gold quality
amygdalaUBERON:000187681.85gold quality
temporal lobeUBERON:000187181.19gold quality
epithelial cell of pancreasCL:000008380.99silver quality
entorhinal cortexUBERON:000272880.69gold quality
substantia nigra pars compactaUBERON:000196580.65gold quality
ponsUBERON:000098880.48gold quality
Ammon’s hornUBERON:000195480.16gold quality
hypothalamusUBERON:000189879.95gold quality
caudate nucleusUBERON:000187379.62gold quality
dorsolateral prefrontal cortexUBERON:000983479.19gold quality
medial globus pallidusUBERON:000247778.76gold quality

Single-cell (SCXA)

Detected in 6 experiment(s), a significant marker in 4.

ExperimentMarker?Max mean expression
E-GEOD-84465yes781.01
E-GEOD-100618yes118.58
E-HCAD-35yes32.50
E-HCAD-25yes15.76
E-HCAD-30no932.44
E-ANND-3no2.17

Regulation

Is transcription factor: no

miRNA regulators (miRDB)

71 targeting P2RY12, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-126-5P100.0072.713180
HSA-MIR-4795-3P100.0074.624024
HSA-MIR-3646100.0073.565283
HSA-MIR-5011-5P100.0083.465820
HSA-MIR-548C-3P99.9974.017587
HSA-MIR-477599.9875.006394
HSA-MIR-4789-5P99.9870.762721
HSA-MIR-480399.9871.993117
HSA-MIR-520D-5P99.9873.344883
HSA-MIR-524-5P99.9873.434882
HSA-MIR-548AT-5P99.9670.832666
HSA-MIR-651-3P99.9473.485177
HSA-MIR-335-3P99.9373.364958
HSA-MIR-6508-5P99.9270.672465
HSA-MIR-329-3P99.9166.561234
HSA-MIR-362-3P99.9166.381267
HSA-MIR-6809-3P99.9171.453814
HSA-MIR-4753-3P99.9071.033786
HSA-MIR-153-5P99.8973.866317
HSA-MIR-3140-3P99.8868.472069
HSA-MIR-806799.8669.592260
HSA-MIR-684499.8270.692423
HSA-MIR-4799-5P99.8270.602663
HSA-MIR-6875-3P99.8270.262983
HSA-MIR-4659A-3P99.8072.624248
HSA-MIR-4659B-3P99.8072.624248
HSA-MIR-4760-5P99.8069.881619
HSA-MIR-139-5P99.8069.501399
HSA-MIR-548AG99.7769.251492
HSA-MIR-5002-5P99.7670.841763

Literature-anchored findings (GeneRIF, showing 40)

  • Characterization and channel coupling of the nucleotide receptor in brain capillary endothelial cells (PMID:12080041)
  • identification of the reactive cysteine residues on the human P2Y(12) receptor by site-directed mutagenesis using pCMBS as the thiol reagent (PMID:12560222)
  • PI3-K activation is signaled by rapid feedback amplification that involves P2Y(12) receptor-mediated activation of Syk. (PMID:12606772)
  • the P2Y(1) purinoceptor and the P2Y(12)receptor appear to be involved in ADP-induced platelet shape change, an early phase of platelet activation that precedes aggregation (PMID:12623443)
  • Intercellular calcium communication is primarily mediated by a signaling mchanism operating between this protein, ITGA2B and ITGB3. (PMID:12668663)
  • In healthy subjects ADP-induced platelet aggregation is associated with a haplotype of the P2Y12 receptor gene. Carriers of the H2 haplotype may have an increased risk of atherothrombosis and less response to platelet inhibitors (PMID:12912815)
  • Supports P2Y(12) as a drug target compared with P2Y(1). (PMID:14644082)
  • ADP-mediated P2Y1 and P2Y12 receptor activation supports LPA-induced platelet aggregation. (PMID:14645014)
  • The P2Y12 H2 haplotype is associated with atherosclerosis. (PMID:14662702)
  • stimulation of the human P2Y12 receptor stably expressed in Chinese hamster ovary cells activates two major intracellular signaling mechanisms leading either to cell proliferation or to actin cytoskeleton reorganization (PMID:14717977)
  • Whereas P2RY1 antagonism did not affect collagen or thrombin-induced thrombin generation, P2RY12 antagonism did decrease both, suggesting that ADP potentiates thrombin generation primarily through the P2Y12 receptor (PMID:15099288)
  • GIRK channels are important functional effectors of the P2Y(12) receptor in human platelets. (PMID:15142872)
  • the Src family kinase inhibitor PP1 selectively potentiates the contribution to the calcium response by P2Y(12), although inhibition of adenylate cyclase by P2Y(12) is unaffected (PMID:15187029)
  • both P2Y12 and P2Y1 contribute to ADP-potentiation of platelet-derived microparticles generation induced by collagen (PMID:15203713)
  • ADP signaling through P2Y(1) may contribute to the initial stages of platelet adhesion and activation mediated by immobilized VWF, and through P2Y(12) to sustained thrombus formation. (PMID:15284110)
  • platelet ADP receptor P2Y(12) and clusterin are downregulated in patients with systemic lupus erythematosus (PMID:15304052)
  • Results describe the cloning of DNA sequences encoding the murine ortholog of the human P2Y12 receptor, and its expression in the mouse brain. (PMID:15464998)
  • P2Y12 receptors could play a key role in the hypersensitivity of platelets in type 2 diabetic patients. (PMID:15483100)
  • Absence of desensitization of the Gi protein-coupled P2Y12 receptor-dependent responses could represent a mechanism to preserve the hemostatic properties in platelets (PMID:15602005)
  • both P2Y(1) and P2Y(12) desensitize in human platelets; P2Y(12), but not P2Y(1), desensitization is mediated by GRKs (PMID:15665114)
  • Galpha(i) signaling downstream of P2Y12 activation, but not Galpha(q) or Galpha(z) signaling downstream of P2Y1 or alpha2A activation, respectively, has a requirement for lipid rafts that is necessary for its function in ADP-mediated platelet activation (PMID:15869601)
  • P2Y12 ADP receptor has a role in tyrosine phosphorylation of proteins of 27 and 31 kDa in thrombin-stimulated human platelets (PMID:15886804)
  • a P2Y12 34C>T polymorphism may have a role in development of ischemic cerebrovascular events in patients with peripheral artery disease (PMID:15933261)
  • function in the platelet procoagulant response (PMID:15968399)
  • There is no association between P2Y12 receptor gene polymorphism and platelet response to clopidogrel in patients with coronary artery disease. (PMID:16181985)
  • Identification of 5-phosphoribosyl 1-pyrophosphate and leukotriene E4 as P2Y12 receptor agonists. (PMID:16185654)
  • Results suggest that P2Y12 plays a potentiatory role in ADP-induced shape change through regulation of the Rho kinase pathway. (PMID:16236603)
  • This study therefore is the first to reveal distinct roles for PKC isoforms in the regulation of platelet P2Y receptor function and trafficking. (PMID:16804093)
  • Data show that at relatively high concentration of agonist, inhibition of the P2Y12 receptor and of calcium mobilization result in complete inhibition of PAR4-induced aggregation, with no effect on either thrombin or PAR1-mediated platelet aggregation. (PMID:16837456)
  • Outside-in signaling via P2Y12 and both PI3Kbeta and PI3Kgamma isoforms is required for maintenance of a platelet aggregate. (PMID:16840732)
  • No influence of the T744C polymorphism of the P2Y12 receptor gene on clopidogrel response in acute coronary syndrome (PMID:17337040)
  • the haplotype H2 of purinergic receptor P2Y G-protein coupled 12 (P2RY12) was significantly associated with a lower risk of incident Deep vein thrombosis/pulmonary embolism as compared to the reference haplotype H1 (PMID:17707382)
  • Gene sequence variations of the P2Y12 receptor gene are associated with the presence of significant coronary artery disease, particularly in non-smoking individuals (PMID:17803810)
  • common variation in the P2Y12 gene predicts restenosis in percutaneous coronary intervention-treated patients (PMID:18175333)
  • The P2Y(13) Met-158-Thr polymorphism is in tight linkage disequilibrium with the P2Y(12) locus but is not associated with acute myocardial infaction or classical cardiovascular risk factors (PMID:18213371)
  • Use VerifyNow P2Y12 assay to measure platelet P2Y12 receptor blockade by prasugrel and clopidogrel. (PMID:18278193)
  • Coexisting polymorphisms of the genes affecting clopiogrel resistance may influence platelet activation (PMID:18577829)
  • present data clearly show that P2Y purinoceptor 11 and P2Y purinoceptor 12 are expressed in human pancreatic islets (PMID:18726826)
  • the the G(i)-coupled P2Y12 receptor has a role in the regulation of diacylglycerol-mediated events in activated platelets (PMID:18755689)
  • plays a critical role in the regulation of integrin alphaIIb beta3 functions. (review) (PMID:18800613)

Cross-species orthologs

3 orthologs

OrganismSymbolGene ID
danio_reriop2ry12ENSDARG00000069945
mus_musculusP2ry12ENSMUSG00000036353
rattus_norvegicusP2ry12ENSRNOG00000013902

Paralogs (6): GPR87 (ENSG00000138271), PTAFR (ENSG00000169403), GPR34 (ENSG00000171659), P2RY14 (ENSG00000174944), GPR171 (ENSG00000174946), P2RY13 (ENSG00000181631)

Protein

Protein identifiers

P2Y purinoceptor 12Q9H244 (reviewed: Q9H244)

Alternative names: ADP-glucose receptor, P2T(AC), P2Y(AC), P2Y(cyc), P2Y12 platelet ADP receptor, SP1999

All UniProt accessions (1): Q9H244

UniProt curated annotations — full annotation on UniProt →

Function. Receptor for ADP and ATP coupled to G-proteins that inhibit the adenylyl cyclase second messenger system. Not activated by UDP and UTP. Required for normal platelet aggregation and blood coagulation.

Subcellular location. Cell membrane.

Tissue specificity. Highly expressed in the platelets, lower levels in the brain. Lowest levels in the lung, appendix, pituitary and adrenal gland. Expressed in the spinal cord and in the fetal brain.

Disease relevance. Bleeding disorder, platelet-type, 8 (BDPLT8) [MIM:609821] A condition characterized by mild to moderate mucocutaneous bleeding, and excessive bleeding after surgery or trauma. The defect is due to severe impairment of platelet response to ADP resulting in defective platelet aggregation. The disease is caused by variants affecting the gene represented in this entry.

Domain organisation. The transmembrane domain is composed of seven transmembrane helices; most of these are not strictly perpendicular to the plane of the membrane, but are tilted and/or kinked. Agonist binding promotes a conformation change in the extracellular loops that leads to an inward movement of the transmembrane helices. Antagonists such as AZD1283 can bind to an overlapping site, but block the inward movement of the transmembrane helices.

Similarity. Belongs to the G-protein coupled receptor 1 family.

RefSeq proteins (2): NP_073625, NP_795345 (=MANE)

Domains & families (InterPro)

IDNameType
IPR000276GPCR_RhodpsnFamily
IPR005394P2Y12_rcptFamily
IPR017452GPCR_Rhodpsn_7TMDomain

Pfam: PF00001

UniProt features (62 total): helix 13, binding site 10, mutagenesis site 9, topological domain 8, transmembrane region 7, sequence variant 4, modified residue 2, glycosylation site 2, disulfide bond 2, chain 1, region of interest 1, compositionally biased region 1, strand 1, turn 1

Structure

Experimental structures (PDB)

5 structures.

PDBMethodResolution (Å)
4PXZX-RAY DIFFRACTION2.5
4NTJX-RAY DIFFRACTION2.62
7PP1X-RAY DIFFRACTION2.78
7XXIELECTRON MICROSCOPY3
4PY0X-RAY DIFFRACTION3.1

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q9H244-F185.110.59

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Ligand- & substrate-binding residues (10): 93; 97; 105; 156–159; 175–179; 187; 191; 256–259; 263; 280

Post-translational modifications (2): 55, 57

Disulfide bonds (2): 17–270, 97–175

Glycosylation sites (2): 6, 13

Mutagenesis-validated functional residues (9):

PositionPhenotype
80abolishes adp binding.
83no effect on adp binding.
97abolishes adp binding.
156slightly decreases affinity for adp.
159slightly decreases affinity for adp.
175abolishes adp binding.
256decreases affinity for adp.
280abolishes adp binding.
281abolishes adp binding.

Function

Pathways and Gene Ontology

Reactome pathways

3 pathways

IDPathway
R-HSA-392170ADP signalling through P2Y purinoceptor 12
R-HSA-417957P2Y receptors
R-HSA-418594G alpha (i) signalling events

MSigDB gene sets: 256 (showing top): GOBP_G_PROTEIN_COUPLED_PURINERGIC_RECEPTOR_SIGNALING_PATHWAY, GOBP_RESPONSE_TO_NITROGEN_COMPOUND, GOBP_G_PROTEIN_COUPLED_PURINERGIC_NUCLEOTIDE_RECEPTOR_SIGNALING_PATHWAY, GOBP_MYELOID_LEUKOCYTE_MIGRATION, REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION, GOBP_PLATELET_ACTIVATION, REACTOME_P2Y_RECEPTORS, GOCC_CELL_SURFACE, GOBP_REGULATION_OF_RUFFLE_ASSEMBLY, GOBP_NEUROGENESIS, GOBP_RESPONSE_TO_AXON_INJURY, GOBP_REGULATION_OF_CELLULAR_COMPONENT_BIOGENESIS, GOBP_CELLULAR_RESPONSE_TO_OXYGEN_CONTAINING_COMPOUND, GOBP_REGULATION_OF_LEUKOCYTE_MIGRATION, GOBP_FOREBRAIN_DEVELOPMENT

GO Biological Process (30): monoatomic ion transport (GO:0006811), substrate-dependent cell migration, cell extension (GO:0006930), G protein-coupled receptor signaling pathway (GO:0007186), adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (GO:0007193), phospholipase C-activating G protein-coupled receptor signaling pathway (GO:0007200), hemostasis (GO:0007599), calcium-mediated signaling (GO:0019722), cerebral cortex radial glia-guided migration (GO:0021801), cell projection organization (GO:0030030), lamellipodium assembly (GO:0030032), platelet activation (GO:0030168), positive regulation of integrin activation by cell surface receptor linked signal transduction (GO:0033626), positive regulation of cell adhesion mediated by integrin (GO:0033630), positive regulation of monoatomic ion transport (GO:0043270), response to axon injury (GO:0048678), regulation of chemotaxis (GO:0050920), positive regulation of chemotaxis (GO:0050921), establishment of localization in cell (GO:0051649), positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (GO:0051897), platelet aggregation (GO:0070527), cellular response to ATP (GO:0071318), visual system development (GO:0150063), positive regulation of ruffle assembly (GO:1900029), regulation of microglial cell migration (GO:1904139), positive regulation of microglial cell migration (GO:1904141), G protein-coupled adenosine receptor signaling pathway (GO:0001973), signal transduction (GO:0007165), adenylate cyclase-modulating G protein-coupled receptor signaling pathway (GO:0007188), blood coagulation (GO:0007596), G protein-coupled purinergic nucleotide receptor signaling pathway (GO:0035589)

GO Molecular Function (5): G protein-coupled adenosine receptor activity (GO:0001609), G protein-coupled ADP receptor activity (GO:0001621), guanyl-nucleotide exchange factor activity (GO:0005085), G protein-coupled purinergic nucleotide receptor activity (GO:0045028), G protein-coupled receptor activity (GO:0004930)

GO Cellular Component (5): plasma membrane (GO:0005886), cell surface (GO:0009986), membrane (GO:0016020), cell projection membrane (GO:0031253), cell body membrane (GO:0044298)

Reactome top-level categories

Rollup of top-3 pathways:

CategoryPathways
Signal amplification1
Nucleotide-like (purinergic) receptors1
GPCR downstream signalling1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
G protein-coupled receptor activity3
cellular anatomical structure3
plasma membrane bounded cell projection assembly2
G protein-coupled receptor signaling pathway2
chemotaxis2
transport1
substrate-dependent cell migration1
signal transduction1
adenylate cyclase-modulating G protein-coupled receptor signaling pathway1
adenylate cyclase inhibitor activity1
phospholipase C activator activity1
regulation of body fluid levels1
intracellular signaling cassette1
cerebral cortex radially oriented cell migration1
telencephalon glial cell migration1
cellular component organization1
lamellipodium organization1
cell activation1
blood coagulation1
cell surface receptor signaling pathway1
integrin activation1
positive regulation of integrin activation1
cell adhesion mediated by integrin1
regulation of cell adhesion mediated by integrin1
positive regulation of cell adhesion1
monoatomic ion transport1
regulation of monoatomic ion transport1
positive regulation of transport1
response to wounding1
regulation of response to external stimulus1
regulation of locomotion1
positive regulation of response to external stimulus1
positive regulation of locomotion1
regulation of chemotaxis1
establishment of localization1
cellular localization1
phosphatidylinositol 3-kinase/protein kinase B signal transduction1
regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction1
positive regulation of intracellular signal transduction1
platelet activation1

Protein interactions and networks

STRING

1694 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
P2RY12P2RX1P51575976
P2RY12P2RY1P47900957
P2RY12CYP2C19P33259912
P2RY12TMEM119Q4V9L6867
P2RY12TREM2Q9NZC2867
P2RY12GP6Q9HCN6853
P2RY12SELPP16109819
P2RY12PPIGQ13427792
P2RY12P2RX4Q99571792
P2RY12ITGA2BP08514774
P2RY12VASPP50552772
P2RY12F3P13726742
P2RY12OLFML3Q9NRN5733
P2RY12CYP3A5P20815726
P2RY12P2RX7Q99572724

IntAct

4 interactions, top by confidence:

ABTypeScore
P2RY12P2RY12psi-mi:“MI:0915”(physical association)0.400
P2RY12GPR89Apsi-mi:“MI:0914”(association)0.350

BioGRID (136): VKORC1L1 (Affinity Capture-MS), LMBR1 (Affinity Capture-MS), KIAA2013 (Affinity Capture-MS), ATP5B (Affinity Capture-MS), SAAL1 (Affinity Capture-MS), GEMIN4 (Affinity Capture-MS), TTYH3 (Affinity Capture-MS), ECSIT (Affinity Capture-MS), SACM1L (Affinity Capture-MS), XPO4 (Affinity Capture-MS), MPP6 (Affinity Capture-MS), TMEM161B (Affinity Capture-MS), IPO11 (Affinity Capture-MS), ACP2 (Affinity Capture-MS), NME2P1 (Affinity Capture-MS)

ESM2 similar proteins: B5X337, D4A4Q2, D4A7K7, O00398, O14626, O35881, P21556, P25105, P32249, P43657, P60019, Q15391, Q1RMI1, Q2NNR5, Q3SAG9, Q3SX17, Q3U507, Q3U6B2, Q3UJF0, Q3ZBK9, Q4G072, Q5ZI82, Q6XCF2, Q80Z39, Q8BFU7, Q8BG55, Q8BLG2, Q8BMC0, Q920A1, Q924T8, Q924T9, Q95KC3, Q95N02, Q95N03, Q99677, Q99JA4, Q99MT7, Q9BXC1, Q9BY21, Q9CPV9

Diamond homologs: D4A4Q2, O14626, O35881, P30992, P32250, Q15391, Q3SX17, Q3ZBK9, Q6GUG4, Q8BG55, Q95KC3, Q99MT7, Q9BE53, Q9BPV8, Q9BY21, Q9CPV9, Q9D8I2, Q9EPX4, Q9ESG6, Q9H244, O00254, P25105, Q28553, P60019, Q05394, Q3SAG9, Q6XCF2, Q9R1K6, Q9UPC5, A5PLE7, E7FEL0, E9QJ73, O00398, O46685, O77590, O88680, P21556, P25104, P30555, P30560

SIGNOR signaling

5 interactions.

AEffectBMechanism
P2RY12“up-regulates activity”GNAI1binding
P2RY12“up-regulates activity”GNAI3binding
P2RY12“up-regulates activity”GNAO1binding
P2RY12“up-regulates activity”GNAZbinding
ADP“up-regulates activity”P2RY12“chemical activation”

Disease & clinical

Clinical variants and AI predictions

ClinVar

24 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic3
Uncertain significance8
Likely benign2
Benign2

Top pathogenic / likely-pathogenic (4)

Variant IDHGVSClassification
592166NM_001393769.1(MED12L):c.4791-1G>APathogenic
2572656NM_022788.5(P2RY12):c.662dup (p.Arg222fs)Likely pathogenic
3391828GRCh37/hg19 3q24-25.1(chr3:146504503-151662391)x1Likely pathogenic
4529923NM_001393769.1(MED12L):c.2394_2395del (p.Val800fs)Likely pathogenic

SpliceAI

2848 predictions. Top by Δscore:

VariantEffectΔscore
3:151338856:TTAC:Tacceptor_gain1.0000
3:151338857:TAC:Tacceptor_gain1.0000
3:151338858:AC:Aacceptor_gain1.0000
3:151338859:CC:Cacceptor_gain1.0000
3:151338860:C:CCacceptor_gain1.0000
3:151338861:T:Aacceptor_loss1.0000
3:151340590:CATTA:Cdonor_loss1.0000
3:151340591:ATTAC:Adonor_loss1.0000
3:151340592:TTACC:Tdonor_loss1.0000
3:151340593:TACCT:Tdonor_loss1.0000
3:151340595:CCTG:Cdonor_loss1.0000
3:151340759:CT:Cacceptor_gain1.0000
3:151350053:TTTCA:Tacceptor_loss1.0000
3:151350055:TCAG:Tacceptor_loss1.0000
3:151350056:CAG:Cacceptor_loss1.0000
3:151350057:A:AGacceptor_gain1.0000
3:151350057:A:ATacceptor_loss1.0000
3:151350057:AG:Aacceptor_gain1.0000
3:151350057:AGGAT:Aacceptor_gain1.0000
3:151350058:G:GAacceptor_gain1.0000
3:151350058:GG:Gacceptor_gain1.0000
3:151350058:GGA:Gacceptor_gain1.0000
3:151350058:GGAT:Gacceptor_gain1.0000
3:151350058:GGATG:Gacceptor_gain1.0000
3:151350203:GGGG:Gdonor_gain1.0000
3:151350204:G:GTdonor_gain1.0000
3:151350204:GGG:Gdonor_gain1.0000
3:151350205:GG:Gdonor_gain1.0000
3:151350205:GGG:Gdonor_gain1.0000
3:151350206:GG:Gdonor_gain1.0000

AlphaMissense

2264 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
3:151338401:A:GW149R0.998
3:151338401:A:TW149R0.998
3:151337962:G:TP295Q0.997
3:151338079:C:GR256P0.997
3:151338099:A:CF249L0.997
3:151338099:A:TF249L0.997
3:151338101:A:GF249L0.997
3:151338252:G:CF198L0.997
3:151338252:G:TF198L0.997
3:151338254:A:GF198L0.997
3:151338481:C:GR122P0.997
3:151338556:C:GC97S0.997
3:151338557:A:TC97S0.997
3:151338094:G:CP251R0.996
3:151338094:G:TP251H0.996
3:151338251:A:GW199R0.996
3:151338251:A:TW199R0.996
3:151338309:T:AK179N0.996
3:151338309:T:GK179N0.996
3:151338322:C:GC175S0.996
3:151338323:A:TC175S0.996
3:151338500:C:GG116R0.996
3:151338500:C:TG116R0.996
3:151338513:A:CS111R0.996
3:151338513:A:TS111R0.996
3:151338515:T:GS111R0.996
3:151338658:A:GL63P0.996
3:151337962:G:CP295R0.995
3:151337972:A:GC292R0.995
3:151337993:A:GW285R0.995

dbSNP variants (sampled 300 via entrez): RS1000069760 (3:151359348 CTT>C), RS1000097247 (3:151353863 C>A,T), RS1000149512 (3:151353542 A>G), RS1000168546 (3:151340643 A>G), RS1000200629 (3:151372954 C>T), RS1000202312 (3:151384376 G>A,C), RS1000390935 (3:151359532 C>A), RS1000514511 (3:151363876 G>T), RS1000675105 (3:151364409 A>G), RS1000808269 (3:151377549 G>A), RS1000878881 (3:151351033 G>A), RS1000929386 (3:151350747 T>TA), RS1001037648 (3:151341251 T>C), RS1001069973 (3:151370717 T>C), RS1001088514 (3:151340989 T>G)

Disease associations

OMIM: gene MIM:600515 | disease phenotypes: MIM:609821, MIM:618872

GenCC curated gene-disease

DiseaseClassificationInheritance
platelet-type bleeding disorder 8StrongAutosomal recessive

ClinGen Gene-Disease Validity (2)

Expert-panel classifications — Definitive > Strong > Moderate > Limited > Disputed > Refuted.

DiseaseClassificationInheritance
platelet-type bleeding disorder 8DefinitiveAR
platelet-type bleeding disorder 8ModerateAD

Mondo (4): platelet-type bleeding disorder 8 (MONDO:0012354), intellectual disability (MONDO:0001071), Nizon-Isidor syndrome (MONDO:0030030), thrombocytopenia (MONDO:0002049)

Orphanet (2): Bleeding disorder due to P2Y12 defect (Orphanet:36355), NON RARE IN EUROPE: Unexplained intellectual disability (Orphanet:319658)

HPO phenotypes

8 total (8 of 8 shown, HPO-id order):

HPOTerm
HP:0000007Autosomal recessive inheritance
HP:0000421Epistaxis
HP:0000978Bruising susceptibility
HP:0001892Abnormal bleeding
HP:0001934Persistent bleeding after trauma
HP:0004846Prolonged bleeding after surgery
HP:0004866Impaired ADP-induced platelet aggregation
HP:0031364Ecchymosis

GWAS associations

1 associations (top):

StudyTraitp-value
GCST006479_120Diverticular disease9.000000e-11

EFO canonical traits (1, from GWAS)

EFO IDTrait name
EFO:0009959diverticular disease

MeSH disease descriptors (3)

DescriptorNameTree numbers
D008607Intellectual DisabilityC10.597.606.360; C23.888.592.604.646; F01.700.687; F03.625.539
D013921ThrombocytopeniaC15.378.140.855; C15.378.243.937
C565220Bleeding Disorder Due To P2RY12 Defect (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2001 (SINGLE PROTEIN), CHEMBL4524011 (PROTEIN FAMILY)

Molecules with ChEMBL bioactivity

11 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 70,174 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL1097279CANGRELOR TETRASODIUM4108
CHEMBL1201772PRASUGREL4844
CHEMBL1771CLOPIDOGREL440,370
CHEMBL334966CANGRELOR4900
CHEMBL398435TICAGRELOR42,956
CHEMBL760ANAGRELIDE423,754
CHEMBL4297589SELATOGREL353
CHEMBL1162175REGRELOR210
CHEMBL2103828ELINOGREL2273
CHEMBL261244REGRELOR DISODIUM23
CHEMBL69139LIXAZINONE2903

PharmGKB: 1 entry (VIP=true, CPIC=false)

PharmGKB clinical annotations

8 annotations.

VariantTypeLevelDrugsPhenotypes
rs2046934Efficacy3clopidogrelMajor Adverse Cardiac Events (MACE)
rs2046934Efficacy4clopidogrelAcute coronary syndrome;Angina Pectoris
rs3732759Efficacy3clopidogrelCoronary Disease
rs6785930Efficacy,Toxicity4clopidogrel
rs6787801Efficacy3clopidogrel
rs6787801Efficacy3cangrelor
rs6809699Efficacy3clopidogrelCoronary Artery Disease
rs9859552Efficacy3cangrelor

PharmGKB variants

21 variants.

VariantGenesLevelScore#Clin annotsDrugs
rs2046934MED12L, P2RY1231.752clopidogrel
rs5853517MED12L, P2RY120.000
rs6785930MED12L, P2RY124-2.251clopidogrel
rs6787801MED12L, P2RY1232.502cangrelor;clopidogrel
rs6801273MED12L, P2RY120.000
rs6809699MED12L, P2RY1232.251clopidogrel
rs9859552MED12L, P2RY1230.501cangrelor
rs10935838MED12L, P2RY120.000
rs16846673MED12L, P2RY120.000
rs10935842MED12L, P2RY120.000
rs4603933MED12L, P2RY120.000
rs1491974MED12L, P2RY120.000
rs9859538MED12L, P2RY120.000
rs7634096MED12L, P2RY120.000
rs12487835MED12L, P2RY120.000
rs16863336MED12L, P2RY120.000
rs12497330MED12L, P2RY120.000
rs12637988MED12L, P2RY120.000
rs16863323MED12L, P2RY120.000
rs7428575MED12L, P2RY120.000
rs3732759MED12L, P2RY1232.001clopidogrel

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: gpcr — P2Y receptors

Most potent curated ligand interactions (29 total), top 25:

LigandActionAffinityParameter
[3H]2MeSADPFull agonist9.6pIC50
2MeSADPFull agonist9.2pKi
selatogrelAntagonist8.7pKd
ADPβSFull agonist8.6pIC50
[3H]AZ12464237Antagonist8.5pKd
[3H]PSB-0413Antagonist8.5pKd
[3H]PSB-22219Antagonist8.34pKd
PSB-22219Antagonist8.3pKi
AR-C67085Antagonist8.2pKd
compound 20o [PMID: 22984835]Antagonist8.1pKi
cangrelorAntagonist8.0pIC50
AZD1283Antagonist8.0pKi
regrelorAntagonist7.95pIC50
ARL66096Antagonist7.95pIC50
ticagrelorAntagonist7.85pKi
PSB-0702Antagonist7.7pIC50
PSB-0739Antagonist7.6pKi
BX 667Antagonist7.0pIC50
clopidogrel (active metabolite)Antagonist6.9pKi
compound 4 [PMID: 22984835]Antagonist6.9pKi
compound 4 [PMID: 23083103]Antagonist6.9pIC50
compound 58l [PMID: 30843696]Antagonist6.53pIC50
BX 048Antagonist6.5pIC50
INS49266Antagonist6.28pIC50
Ap4AAntagonist6.0pIC50

Binding affinities (BindingDB)

17 measured of 17 human assays (17 total across all organisms); most potent 17 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
3,3,3-trifluoropropyl 4-[2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]acetyl]piperazine-1-carboxylateIC503 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
butyl 4-[(2S)-2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-4-hydroxybutanoyl]piperazine-1-carboxylateIC504 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
butyl 4-[(2S)-2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-3-hydroxypropanoyl]piperazine-1-carboxylateIC504 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(4S)-4-[[4-[(2R)-1-[(2S)-2-(cyclopropylmethylcarbamoyl)pyrrolidin-1-yl]-1-oxopropan-2-yl]oxy-7-methylquinoline-2-carbonyl]amino]-5-(4-ethoxycarbonylpiperazin-1-yl)-5-oxopentanoic acidIC505 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
propyl 4-[(2S)-2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-5-methoxy-5-oxopentanoyl]piperazine-1-carboxylateIC505 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
butyl 4-[2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]quinoline-2-carbonyl]amino]acetyl]piperazine-1-carboxylateIC505 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
butyl 4-[(2S)-2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-4-(2H-tetrazol-5-yl)butanoyl]piperazine-1-carboxylateIC508 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(3S)-3-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-6-fluoro-7-methylquinoline-2-carbonyl]amino]-4-(4-ethoxycarbonylpiperazin-1-yl)-4-oxobutanoic acidIC509 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(4S)-5-(4-ethoxycarbonylpiperazin-1-yl)-4-[[7-methyl-4-[(2R)-1-oxo-1-[(2S)-2-(piperidine-1-carbonyl)pyrrolidin-1-yl]propan-2-yl]oxyquinoline-2-carbonyl]amino]-5-oxopentanoic acidIC5012 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(4S)-5-(4-ethoxycarbonylpiperazin-1-yl)-4-[[7-methyl-4-[2-oxo-2-[(2S)-2-(pyrrolidine-1-carbonyl)pyrrolidin-1-yl]ethoxy]quinoline-2-carbonyl]amino]-5-oxopentanoic acidIC5017 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
ethyl 4-[(2S)-2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-5-(2-methylpropoxy)-5-oxopentanoyl]piperazine-1-carboxylateIC5028 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(4S)-4-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-6,7-difluoroquinoline-2-carbonyl]amino]-5-(4-ethoxycarbonylpiperazin-1-yl)-5-oxopentanoic acidIC5065 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(4S)-5-(4-ethoxycarbonylpiperazin-1-yl)-5-oxo-4-[[4-[2-oxo-2-[(2S)-2-(2,2,2-trifluoroethylcarbamoyl)pyrrolidin-1-yl]ethoxy]quinoline-2-carbonyl]amino]pentanoic acidIC5067 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
ethyl 4-[(2S)-2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-5-(cyclopentylmethoxy)-5-oxopentanoyl]piperazine-1-carboxylateIC5071 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
ethyl 4-[(2S)-5-amino-2-[[4-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-5-oxopentanoyl]piperazine-1-carboxylateIC5083 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(4S)-5-(4-ethoxycarbonylpiperazin-1-yl)-5-oxo-4-[[4-[2-oxo-2-(2-phenylpyrrolidin-1-yl)ethoxy]quinoline-2-carbonyl]amino]pentanoic acidIC50102 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists
(4S)-5-(4-ethoxycarbonylpiperazin-1-yl)-4-[[4-[2-[(2S)-2-ethoxycarbonylpyrrolidin-1-yl]-2-oxoethoxy]-7-methylquinoline-2-carbonyl]amino]-5-oxopentanoic acidIC50132 nMUS-8669266: Quinoline-carboxamide derivatives as P2Y12 antagonists

ChEMBL bioactivities

1610 potent at pChembl≥5 of 1726 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.80Kd0.1585nMCHEMBL455536
9.60Ki0.2512nMCHEMBL251041
9.52Ki0.3nMCHEMBL5181634
9.50IC500.3162nMCHEMBL251024
9.48IC500.33nMCHEMBL5176593
9.42Ki0.38nMCHEMBL570295
9.40IC500.3981nMCANGRELOR
9.40IC500.4nMCANGRELOR
9.40Ki0.4nMCHEMBL567915
9.35IC500.45nMCANGRELOR
9.34Ki0.46nMCHEMBL567561
9.30IC500.5012nMCHEMBL437204
9.24Ki0.58nMCHEMBL601696
9.22Ki0.6nMCHEMBL567740
9.21Ki0.61nMCHEMBL565974
9.20Ki0.631nMCHEMBL249790
9.19Ki0.64nMCHEMBL601489
9.17Ki0.67nMCHEMBL565836
9.17Ki0.68nMCHEMBL570295
9.16Ki0.69nMCHEMBL568059
9.15EC500.7nMCHEMBL90804
9.15Ki0.7nMCHEMBL567133
9.15Ki0.71nMCHEMBL567709
9.15IC500.7nMCANGRELOR TETRASODIUM
9.10Ki0.8nMCHEMBL2172149
9.10IC500.7943nMCHEMBL1160364
9.10Ki0.79nMCHEMBL568211
9.10Ki0.79nMCHEMBL601695
9.08Ki0.83nMCHEMBL566913
9.05IC500.9nMCHEMBL3326907
9.05Ki0.9nMCHEMBL565409
9.04Ki0.92nMCHEMBL571599
9.01Ki0.98nMCHEMBL601698
9.00EC501nMCHEMBL431799
9.00EC501nMCHEMBL90237
9.00IC501nMCHEMBL3288123
9.00IC501nMCHEMBL5179719
9.00IC501nMCHEMBL5184268
9.00IC501nMCHEMBL5195237
9.00IC501nMCHEMBL5173489
9.00IC501nMCHEMBL5192953
9.00IC501nMCHEMBL5203416
9.00Ki0.99nMCHEMBL570275
9.00Ki1nMCHEMBL569914
9.00Ki1nMCHEMBL569097
8.96Ki1.1nMCHEMBL601903
8.96Ki1.1nMCHEMBL601692
8.92Ki1.2nMCHEMBL567416
8.92Ki1.2nMCHEMBL570128
8.92Ki1.2nMCHEMBL566745

PubChem BioAssay actives

1590 with measured affinity, of 2389 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
disodium;1-amino-4-(4-anilino-3-sulfonatoanilino)-9,10-dioxoanthracene-2-sulfonate1443659: Competitive antagonist activity at human P2Y12 receptor expressed in CHO cells assessed as forskolin/ 2-methylthio-ADP-induced cAMP production preincubated for 10 mins followed 2-methylthio-ADP addition measured after 3.5 hrs by luciferase reporter gene assaykd0.0002uM
(1S,2R,3S,4R)-2,3-dihydroxy-4-[7-[[(1R,2S)-2-phenylcyclopropyl]amino]-5-propylsulfanyltriazolo[4,5-d]pyrimidin-3-yl]cyclopentane-1-carboxylic acid309606: Displacement of [125I] labeled ligand from human P2Y12 receptor in human plateletski0.0003uM
ethyl 5-cyano-2-methyl-6-[4-(3-phenyl-1H-1,2,4-triazol-5-yl)piperidin-1-yl]pyridine-3-carboxylate1871493: Inhibition of 2-MeS-ADP induced P2Y12 (unknown origin) signalling expressed in CHO cells membrane incubated for 45 mins by 35S-GTPgammaS assayic500.0003uM
(2S)-2-[[(E)-3-[(2R,3S,4R,5R)-5-[7-(butylamino)-5-propylsulfanyltriazolo[4,5-d]pyrimidin-3-yl]-3,4-dihydroxyoxolan-2-yl]prop-2-enoyl]amino]butanedioic acid1953760: Antagonist activity at human P2Y12 by aggregation assayic500.0003uM
2-(2-fluoroethoxy)-6-propyl-4-[3-(trifluoromethyl)-6,8-dihydro-5H-[1,2,4]triazolo[4,3-a]pyrazin-7-yl]thieno[2,3-d]pyrimidine1850678: Displacement of [3H]-2MesADP from human P2Y12 in HEK cell membrane assessed as inhibition constant incubated for 1 hr by scintillation counter methodki0.0003uM
(4S)-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)-4-[[2-phenyl-6-[4-(pyrrolidin-1-ylmethyl)piperidin-1-yl]pyrimidine-4-carbonyl]amino]pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0004uM
(4S)-5-(4-butoxycarbonylpiperazin-1-yl)-4-[[4-[4-(ethylcarbamoyl)piperidin-1-yl]-6-phenylpyridine-2-carbonyl]amino]-5-oxopentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0004uM
Cangrelor1298771: Antagonist activity at P2Y12 receptor in human platelets assessed as inhibition of ADP-induced platelet aggregation by turbidimetric methodic500.0004uM
(2S)-2-[[(E)-3-[(1R,2R,3S,4R)-4-[7-(butylamino)-5-propylsulfanyltriazolo[4,5-d]pyrimidin-3-yl]-2,3-dihydroxycyclopentyl]prop-2-enoyl]amino]butanedioic acid1953760: Antagonist activity at human P2Y12 by aggregation assayic500.0005uM
(4S)-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)-4-[[2-phenyl-6-[4-(pyrrolidine-1-carbonyl)piperidin-1-yl]pyrimidine-4-carbonyl]amino]pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0005uM
(1S,2S,3R,5S)-3-[7-[[(1R,2S)-2-(3,4-difluorophenyl)cyclopropyl]amino]-5-(3,3,3-trifluoropropylsulfanyl)triazolo[4,5-d]pyrimidin-3-yl]-5-(2-hydroxyethoxy)cyclopentane-1,2-diol309606: Displacement of [125I] labeled ligand from human P2Y12 receptor in human plateletski0.0006uM
(4S)-4-[[6-[4-(diethylaminomethyl)piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0006uM
(4S)-4-[[6-[4-(ethylcarbamoyl)piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0006uM
(4S)-4-[[4-[4-(ethylcarbamoyl)piperidin-1-yl]-6-phenylpyridine-2-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid457976: Inhibition of human P2Y12 receptor expressed in CHO cellski0.0006uM
(4S)-4-[[4-(3-carbamoylazetidin-1-yl)-6-phenylpyridine-2-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid457976: Inhibition of human P2Y12 receptor expressed in CHO cellski0.0006uM
tetrasodium;[dichloro(phosphonato)methyl]-[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(2-methylsulfanylethylamino)-2-(3,3,3-trifluoropropylsulfanyl)purin-9-yl]oxolan-2-yl]methoxy-oxidophosphoryl]oxyphosphinate480267: Antagonist activity at P2Y12 receptor by [35S]GTPgammaS binding assayic500.0007uM
methyl 2-[cyclohexyl-[4-[(2-oxo-1,3-dihydroimidazo[4,5-b]quinolin-7-yl)oxy]butanoyl]amino]acetate92528: Inhibition of platelet aggregation using adenosine diphosphate (ADP) as activating agent in human platelet rich plasma (PRP)ec500.0007uM
(4S)-4-[[6-(4-aminopiperidin-1-yl)-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0007uM
(4S)-4-[[6-[4-(2-hydroxyethoxy)piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0007uM
(4S)-5-(4-butoxycarbonylpiperazin-1-yl)-5-oxo-4-[[2-phenyl-6-[4-(pyrrolidine-1-carbonyl)piperidin-1-yl]pyrimidine-4-carbonyl]amino]pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0007uM
(4S)-4-[[6-[4-[2-(ethylamino)-2-oxoethyl]piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0007uM
[dichloro-[[[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(2,2,2-trifluoroethylamino)-2-(3,3,3-trifluoropropylsulfanyl)purin-9-yl]oxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]methyl]phosphonic acid1298771: Antagonist activity at P2Y12 receptor in human platelets assessed as inhibition of ADP-induced platelet aggregation by turbidimetric methodic500.0008uM
(4S)-5-(4-butoxycarbonylpiperazin-1-yl)-4-[[5-[2-[(2S)-2-(cyclobutylcarbamoyl)pyrrolidin-1-yl]-2-oxoethoxy]-1-phenylpyrazole-3-carbonyl]amino]-5-oxopentanoic acid703441: Displacement of [33P]2-MeS-ADP from human recombinant P2Y12 receptor expressed in CHO cell membranes by scintillation counting methodki0.0008uM
(4S)-5-(4-butoxycarbonylpiperazin-1-yl)-4-[[6-[4-(diethylcarbamoyl)piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxopentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0008uM
(4S)-4-[[6-[4-(azetidine-1-carbonyl)piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0008uM
(4S)-5-(4-butoxycarbonylpiperazin-1-yl)-5-oxo-4-[[4-[4-[(2-oxopyrrolidin-1-yl)methyl]piperidin-1-yl]-6-phenylpyridine-2-carbonyl]amino]pentanoic acid457976: Inhibition of human P2Y12 receptor expressed in CHO cellski0.0008uM
(4S)-4-[[6-[4-[2-(methylamino)-2-oxoethyl]piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0009uM
(4S)-4-[[6-[4-[2-(azetidin-1-yl)-2-oxoethyl]piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0009uM
2-[3-[[4-(4-butanoyl-5-methylpyrazol-1-yl)phenyl]carbamoyl]-5-methylindol-1-yl]acetic acid1186074: Displacement of [33P]2MeS-ADP from P2Y12 receptor (unknown origin) transfected in CHO cells after 30 mins by scintillation counting analysisic500.0009uM
N-cyclohexyl-N-methyl-5-[(2-oxo-1,3-dihydroimidazo[4,5-b]quinolin-7-yl)oxy]pentanamide92528: Inhibition of platelet aggregation using adenosine diphosphate (ADP) as activating agent in human platelet rich plasma (PRP)ec500.0010uM
N-cycloheptyl-N-methyl-5-[(2-oxo-1,3-dihydroimidazo[4,5-b]quinolin-7-yl)oxy]pentanamide92528: Inhibition of platelet aggregation using adenosine diphosphate (ADP) as activating agent in human platelet rich plasma (PRP)ec500.0010uM
1-(5-butanoyl-3-cyano-6-methylsulfanyl-2-pyridinyl)-N-(1-phenylcyclopropyl)sulfonylpiperidine-4-carboxamide1153640: Antagonist activity P2Y12 receptor in human washed platelets assessed as inhibition of ADP-induced platelet aggregation after 5 to 90 mins by spectrophotometric analysisic500.0010uM
(4S)-4-[[4-[3-(dimethylamino)propyl]-6-phenylpyridine-2-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid461227: Displacement of [33P]ADP from human recombinant P2Y12 receptor expressed in CHO cellski0.0010uM
(4S)-4-[(6-morpholin-4-yl-2-phenylpyrimidine-4-carbonyl)amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0010uM
(4S)-5-oxo-4-[[6-[4-[(2-oxopyrrolidin-1-yl)methyl]piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0010uM
(4S)-4-[[4-[4-(dimethylcarbamoyl)piperidin-1-yl]-6-phenylpyridine-2-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid457976: Inhibition of human P2Y12 receptor expressed in CHO cellski0.0010uM
[4-[(2S)-3-(4-butoxycarbonylpiperazin-1-yl)-3-oxo-2-[(2-phenyl-1,3-thiazole-4-carbonyl)amino]propyl]phenyl]phosphonic acid1871489: Displacement of tritium-labeled 2MeSADP from human P2Y12 expressed in CHO cells measured after 2 hrs by scintillation counting methodic500.0010uM
[(2R)-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[5-(4-methylpiperazin-1-yl)-2-phenyl-1,3-thiazole-4-carbonyl]amino]-3-oxopropyl]phosphonic acid1871489: Displacement of tritium-labeled 2MeSADP from human P2Y12 expressed in CHO cells measured after 2 hrs by scintillation counting methodic500.0010uM
[(2R)-3-(4-butoxycarbonylpiperazin-1-yl)-2-[[5-[butyl(methyl)amino]-2-phenyl-1,3-thiazole-4-carbonyl]amino]-3-oxopropyl]phosphonic acid1871489: Displacement of tritium-labeled 2MeSADP from human P2Y12 expressed in CHO cells measured after 2 hrs by scintillation counting methodic500.0010uM
[(2R)-3-(4-butoxycarbonylpiperazin-1-yl)-3-oxo-2-[(2-phenyl-1,3-thiazole-4-carbonyl)amino]propyl]phosphonic acid1871489: Displacement of tritium-labeled 2MeSADP from human P2Y12 expressed in CHO cells measured after 2 hrs by scintillation counting methodic500.0010uM
[4-[(2S)-3-(4-ethoxycarbonylpiperazin-1-yl)-3-oxo-2-[(2-phenyl-1,3-thiazole-4-carbonyl)amino]propyl]phenyl]phosphonic acid1871489: Displacement of tritium-labeled 2MeSADP from human P2Y12 expressed in CHO cells measured after 2 hrs by scintillation counting methodic500.0010uM
(4S)-5-(4-butoxycarbonylpiperazin-1-yl)-4-[[5-[(3S)-3-methoxypyrrolidin-1-yl]-2-phenyl-1,3-thiazole-4-carbonyl]amino]-5-oxopentanoic acid1871489: Displacement of tritium-labeled 2MeSADP from human P2Y12 expressed in CHO cells measured after 2 hrs by scintillation counting methodic500.0010uM
(4S)-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)-4-[[6-phenyl-4-[4-(pyrrolidin-1-ylmethyl)piperidin-1-yl]pyridine-2-carbonyl]amino]pentanoic acid457976: Inhibition of human P2Y12 receptor expressed in CHO cellski0.0011uM
(4S)-5-(4-butoxycarbonylpiperazin-1-yl)-4-[[4-[4-(diethylcarbamoyl)piperidin-1-yl]-6-phenylpyridine-2-carbonyl]amino]-5-oxopentanoic acid457976: Inhibition of human P2Y12 receptor expressed in CHO cellski0.0011uM
(4S)-4-[[6-(2-methoxyethoxy)-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0012uM
(4S)-4-[[4-(2-methoxyethoxy)-6-phenylpyrimidine-2-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0012uM
(4S)-4-[[6-(2-methoxyethylamino)-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0012uM
(4S)-4-[[6-(3-ethoxyazetidin-1-yl)-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0012uM
(4S)-4-[[6-(4-carbamoylpiperazin-1-yl)-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0012uM
(4S)-4-[[6-[4-(methylaminomethyl)piperidin-1-yl]-2-phenylpyrimidine-4-carbonyl]amino]-5-oxo-5-(4-pentoxycarbonylpiperazin-1-yl)pentanoic acid443858: Binding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayki0.0012uM

CTD chemical–gene interactions

15 total (human), top 15 by PubMed support.

ChemicalActions (top 5)PubMed papers
Clopidogrelaffects binding, decreases activity, affects response to substance, affects reaction6
cangrelordecreases phosphorylation, affects response to substance, affects binding, decreases abundance, decreases activity3
Adenosine Diphosphateaffects reaction, increases expression, affects response to substance3
triphenyl phosphateaffects expression1
S-(1,2-dichlorovinyl)cysteineaffects response to substance, increases expression, affects cotreatment, decreases expression1
phosphatidylinositol 3,4,5-triphosphateaffects binding, decreases abundance, decreases activity1
CGP 52608affects binding, increases reaction1
CT 50547decreases activity, affects binding1
Ticagreloraffects binding, decreases activity1
Anthraquinonesdecreases activity1
Benzo(a)pyreneincreases methylation1
Diethylhexyl Phthalatedecreases expression1
Lipopolysaccharidesaffects response to substance, increases expression, affects cotreatment, decreases expression1
Aflatoxin B1increases methylation1
Antirheumatic Agentsdecreases expression1

ChEMBL screening assays

160 unique, capped per target: 102 binding, 58 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1042521BindingBinding affinity at human recombinant P2Y12 receptor expressed in CHO cells by radioligand binding assayPiperazinyl-glutamate-pyrimidines as potent P2Y12 antagonists for inhibition of platelet aggregation. — Bioorg Med Chem Lett
CHEMBL1042522FunctionalAntagonist activity at P2Y12 receptor in human platelet rich plasma assessed as inhibition of ADP-induced platelet aggregation by light transmission aggregometryPiperazinyl-glutamate-pyrimidines as potent P2Y12 antagonists for inhibition of platelet aggregation. — Bioorg Med Chem Lett

Cellosaurus cell lines

6 cell lines: 5 cancer cell line, 1 spontaneously immortalized cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_D1Y1Abcam A-549 P2RY12 KOCancer cell lineMale
CVCL_D2NTAbcam THP-1 P2RY12 KOCancer cell lineMale
CVCL_H3571321N1/P2Y12/Galpha15Cancer cell lineMale
CVCL_KY75PathHunter CHO-K1 P2RY12 beta-arrestinSpontaneously immortalized cell lineFemale
CVCL_LB07PathHunter U2OS P2RY12 Total GPCR InternalizationCancer cell lineFemale
CVCL_ZD951321N1-HA-P2Y12Cancer cell lineMale

Clinical trials (associated diseases)

300 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT05657860PHASE4COMPLETEDGuanfacine Extended Release for the Reduction of Aggression and Self-injurious Behavior Associated With Prader-Willi Syndrome
NCT05744479PHASE4RECRUITINGMetformin for Antipsychotic-induced Weight Gain in Adults With Intellectual Disability
NCT06107829PHASE4WITHDRAWNValbenazine Treatment of Tardive Dyskinesia in Adults With Intellectual/Developmental Disabilities
NCT06997198PHASE4NOT_YET_RECRUITINGDeutetrabenazine Treatment for Tardive Dyskinesia in Intellectual/Developmental Disabilities
NCT00039858PHASE4COMPLETEDEvaluation of Argatroban Injection in Pediatric Patients Requiring Anticoagulant Alternatives to Heparin
NCT00239733PHASE4TERMINATEDAnti-D for Treating Thrombocytopenia in Adults Infected With Hepatitis C Virus With or Without HIV Co-Infection
NCT00907478PHASE4COMPLETEDStudy on Bone Marrow Morphology in Adults Receiving Romiplostim for Treatment of Thrombocytopenia Associated With Immune Thrombocytopenia Purpura (ITP)
NCT01727401PHASE4TERMINATEDThromboprophylaxis of Venous Thromboembolism in Acutely-ill Medical Inpatients With Thrombocytopenia
NCT02032134PHASE4TERMINATEDProtocol for the Infusion of Buffy Coat-derived Cryopreserved Platelets in Patients With Severe Thrombocytopenia
NCT02267993PHASE4COMPLETEDEfficacy and Safety of rhTPO for the Treatment of Thrombocytopenia After Chemotherapy in AML Patients
NCT03633019PHASE4UNKNOWNHigh-dose Use of rhTPO in CIT Patients
NCT03688191PHASE4UNKNOWNStudy of Sirolimus in CTD-TP in China
NCT04906083PHASE4UNKNOWNAvatrombopag in Patients With End-stage Liver Disease and Thrombocytopenia
NCT05217719PHASE4UNKNOWNEffects of Recombinant Human Thrombopoietin on Platelet Levels in ICU Patients
NCT05255003PHASE4RECRUITINGSTrategies for Anticoagulation in Patients With thRombocytopenia and Cancer-associated Thrombosis
NCT05382013PHASE4UNKNOWNEfficacy and Safety of Avatrombopag for Treating TCP in HBV-ACLF Patients Receiving ALSS Treatment
NCT05944458PHASE4COMPLETEDEfficacy of Intravenous N-Acetylcysteine in Preventing Linezolid-Induced Thrombocytopenia in Critically Ill Patients
NCT06562738PHASE4RECRUITINGClinical Study on Efficacy and Safety of Hetrombopag in the Preoperative Patients of Thrombocytopenia
NCT02270736PHASE3COMPLETEDClinical Study to Investigate the Efficacy and Safety of NT 201 Compared to Placebo in the Treatment of Chronic Troublesome Drooling Associated With Neurological Disorders and/or Intellectual Disability
NCT00037791PHASE3COMPLETEDSafety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia
NCT00039910PHASE3COMPLETEDSafety and Efficacy of (PN-152,243)/PN-196,444 in the Prevention of Thrombocytopenia
NCT00073580PHASE3COMPLETEDAngiomax in Patients With HIT/HITTS Type II Undergoing Off-Pump Coronary Artery Bypass Grafting (CABG) (CHOOSE)
NCT00102323PHASE3COMPLETEDAMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Refractory to Splenectomy
NCT00102336PHASE3COMPLETEDAMG 531 Treatment of Thrombocytopenic Subjects With Immune (Idiopathic) Thrombocytopenic Purpura (ITP) Prior to Splenectomy
NCT00116688PHASE3COMPLETEDOpen Label Extension Study of Romiplostim (AMG 531) in Thrombocytopenic Patients With Immune (Idiopathic) Thrombocytopenic Purpura (ITP)
NCT00128713PHASE3COMPLETEDOptimal Platelet Dose Strategy for Management of Thrombocytopenia
NCT00151866PHASE3COMPLETEDEfficacy of Transfusions With Platelets Stored in Platelet Additive Solution II Versus Plasma
NCT00261924PHASE3COMPLETEDEfficacy and Safety Study of Platelets Treated for Pathogen Inactivation and Stored for Up to Seven Days
NCT00415532PHASE3COMPLETEDRomiplostim (AMG 531) Versus Medical Standard of Care for Immune (Idiopathic) Thrombocytopenic Purpura
NCT00420914PHASE3TERMINATEDStrategies for Transfusion of Platelets (SToP)
NCT00501345PHASE3TERMINATEDAspirin in Patients With Myocardial Infarction and Thrombocytopenia
NCT00508820PHASE3COMPLETEDAn Open Label Study of Romiplostim in Adult Thrombocytopenic Subjects With ITP
NCT00678587PHASE3TERMINATEDEltrombopag To Reduce The Need For Platelet Transfusion In Subjects With Chronic Liver Disease And Thrombocytopenia Undergoing Elective Invasive Procedures
NCT01438840PHASE3COMPLETEDEfficacy and Safety of Oral E5501 Plus Standard of Care for the Treatment of Thrombocytopenia in Adults With Chronic Immune Thrombocytopenia (Amendment 02)
NCT01444417PHASE3COMPLETEDSafety and Efficacy Study of Romiplostim to Treat Immune Thrombocytopenia (ITP) in Pediatric Patients
NCT01805648PHASE3UNKNOWNEfficacy and Safety Study of Maintenance Treatment With rhTPO in Thrombocytopenic Subjects With ITP
NCT02244658PHASE3UNKNOWNRecombinant Human Thrombopoietin (rhTPO) in Management of Chemotherapy-induced Thrombocytopenia in Acute Myelocytic Leukemia
NCT02389621PHASE3COMPLETEDSafety and Efficacy Study of Lusutrombopag for Thrombocytopenia in Patients With Chronic Liver Disease Undergoing Elective Invasive Procedures
NCT02444728PHASE3TERMINATEDCyclophosphamide and Hydroxychloroquine for Thrombocytopenia in SLE
NCT02487563PHASE3COMPLETEDProspective Study of Patients With Thrombocytopenia Following HSCT