P4HB

gene
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Also known as PDIA1PROHBDSIGITPDIPO4HBP4Hbeta

Summary

P4HB (prolyl 4-hydroxylase subunit beta, HGNC:8548) is a protein-coding gene on chromosome 17q25.3, encoding Protein disulfide-isomerase (P07237). This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds.

This gene encodes the beta subunit of prolyl 4-hydroxylase, a highly abundant multifunctional enzyme that belongs to the protein disulfide isomerase family. When present as a tetramer consisting of two alpha and two beta subunits, this enzyme is involved in hydroxylation of prolyl residues in preprocollagen. This enzyme is also a disulfide isomerase containing two thioredoxin domains that catalyze the formation, breakage and rearrangement of disulfide bonds. Other known functions include its ability to act as a chaperone that inhibits aggregation of misfolded proteins in a concentration-dependent manner, its ability to bind thyroid hormone, its role in both the influx and efflux of S-nitrosothiol-bound nitric oxide, and its function as a subunit of the microsomal triglyceride transfer protein complex.

Source: NCBI Gene 5034 — RefSeq curated summary.

At a glance

  • Gene–disease (curated): Cole-Carpenter syndrome 1 (Strong, GenCC) — +2 more curated relationships
  • Clinical variants (ClinVar): 423 total — 1 pathogenic, 2 likely-pathogenic
  • Phenotypes (HPO): 39
  • Druggable target: yes — 1 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_000918

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:8548
Approved symbolP4HB
Nameprolyl 4-hydroxylase subunit beta
Location17q25.3
Locus typegene with protein product
StatusApproved
AliasesPDIA1, PROHB, DSI, GIT, PDI, PO4HB, P4Hbeta
Ensembl geneENSG00000185624
Ensembl biotypeprotein_coding
OMIM176790
Entrez5034

Gene structure

Transcript identifiers

Ensembl transcripts: 84 — 29 protein_coding, 28 retained_intron, 24 nonsense_mediated_decay, 3 protein_coding_CDS_not_defined

ENST00000331483, ENST00000415593, ENST00000439918, ENST00000466567, ENST00000467086, ENST00000471535, ENST00000472244, ENST00000473021, ENST00000474712, ENST00000476482, ENST00000477607, ENST00000478034, ENST00000484286, ENST00000570907, ENST00000571507, ENST00000571617, ENST00000573778, ENST00000574007, ENST00000574914, ENST00000575069, ENST00000576052, ENST00000576380, ENST00000576390, ENST00000576541, ENST00000679366, ENST00000679396, ENST00000679439, ENST00000679455, ENST00000679470, ENST00000679628, ENST00000679688, ENST00000679889, ENST00000680076, ENST00000680083, ENST00000680105, ENST00000680191, ENST00000680208, ENST00000680226, ENST00000680259, ENST00000680368, ENST00000680400, ENST00000680416, ENST00000680547, ENST00000680559, ENST00000680593, ENST00000680719, ENST00000680732, ENST00000680799, ENST00000680838, ENST00000680846, ENST00000680847, ENST00000680884, ENST00000680909, ENST00000680914, ENST00000681020, ENST00000681030, ENST00000681031, ENST00000681068, ENST00000681161, ENST00000681259, ENST00000681420, ENST00000681485, ENST00000681515, ENST00000681566, ENST00000681571, ENST00000681614, ENST00000681693, ENST00000681760, ENST00000681835, ENST00000681872, ENST00000681933, ENST00000681954, ENST00000889211, ENST00000889212, ENST00000889213, ENST00000889214, ENST00000936206, ENST00000936207, ENST00000936208, ENST00000936209, ENST00000948310, ENST00000948311, ENST00000948312, ENST00000948313

RefSeq mRNA: 1 — MANE Select: NM_000918 NM_000918

CCDS: CCDS11787

Canonical transcript exons

ENST00000331483 — 11 exons

ExonStartEnd
ENSE000017698768184316681844092
ENSE000026832708186032781860535
ENSE000034897578185918181859387
ENSE000035177438184724381847347
ENSE000035569588185514281855279
ENSE000035699678184694781847072
ENSE000035814408184556181845742
ENSE000035937618185545381855586
ENSE000036359868184514481845230
ENSE000036692808184587181845991
ENSE000036849868184642981846629

Expression profiles

Bgee: expression breadth ubiquitous, 293 present calls, max score 99.86.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 329.8390 / max 5195.1495, expressed in 1827 samples.

FANTOM5 promoters (14 alternative TSS)

Promoter IDTPM avgSamples expressed
168815316.67501827
1688042.41931066
1688101.68781082
1687961.5946912
1688131.1998770
1688021.1679762
1688070.9088584
1688110.8088497
1688140.7543456
1688090.7433474

Top tissues by expression

294 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
stromal cell of endometriumCL:000225599.86gold quality
parotid glandUBERON:000183199.84gold quality
jejunal mucosaUBERON:000039999.75gold quality
body of pancreasUBERON:000115099.75gold quality
ileal mucosaUBERON:000033199.71gold quality
islet of LangerhansUBERON:000000699.70gold quality
right lobe of liverUBERON:000111499.70gold quality
duodenumUBERON:000211499.65gold quality
saliva-secreting glandUBERON:000104499.57gold quality
endometrium epitheliumUBERON:000481199.56gold quality
pancreasUBERON:000126499.54gold quality
lower esophagus mucosaUBERON:003583499.54gold quality
type B pancreatic cellCL:000016999.53gold quality
adenohypophysisUBERON:000219699.53gold quality
left adrenal glandUBERON:000123499.52gold quality
minor salivary glandUBERON:000183099.52gold quality
right adrenal glandUBERON:000123399.50gold quality
left adrenal gland cortexUBERON:003582599.50gold quality
pituitary glandUBERON:000000799.49gold quality
liverUBERON:000210799.49gold quality
skin of legUBERON:000151199.48gold quality
mouth mucosaUBERON:000372999.48gold quality
adrenal tissueUBERON:001830399.48gold quality
adrenal glandUBERON:000236999.47gold quality
esophagus mucosaUBERON:000246999.47gold quality
right adrenal gland cortexUBERON:003582799.46gold quality
skin of abdomenUBERON:000141699.45gold quality
body of stomachUBERON:000116199.44gold quality
mucosa of transverse colonUBERON:000499199.43gold quality
adrenal cortexUBERON:000123599.41gold quality

Single-cell (SCXA)

Detected in 16 experiment(s), a significant marker in 13.

ExperimentMarker?Max mean expression
E-GEOD-100618yes1313.30
E-HCAD-5yes952.22
E-MTAB-9467yes55.06
E-CURD-122yes45.77
E-HCAD-10yes30.54
E-MTAB-9067yes21.79
E-MTAB-5061yes18.47
E-CURD-112yes15.83
E-HCAD-13yes11.68
E-CURD-46yes11.03
E-MTAB-10042yes8.77
E-HCAD-1yes8.64
E-MTAB-7303no2341.16
E-CURD-97no544.96
E-MTAB-9801no4.18

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): ESR1

miRNA regulators (miRDB)

39 targeting P4HB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-MIR-6856-5P100.0065.471298
HSA-MIR-6758-5P100.0066.211470
HSA-MIR-428299.9975.366408
HSA-MIR-1213699.9872.815713
HSA-MIR-548N99.9871.944170
HSA-MIR-568099.9169.833421
HSA-MIR-130599.9171.433443
HSA-MIR-548E-5P99.8972.734486
HSA-MIR-449299.8768.253611
HSA-MIR-5002-5P99.7670.841763
HSA-MIR-670-5P99.6769.941565
HSA-MIR-548AV-5P99.6070.842107
HSA-MIR-548K99.6070.842107
HSA-MIR-76299.5866.611994
HSA-MIR-805499.4870.812084
HSA-MIR-449899.4767.422360
HSA-MIR-513A-3P99.3970.633620
HSA-MIR-513C-3P99.3970.633620
HSA-MIR-429299.1665.571767
HSA-MIR-6791-5P99.1665.921844
HSA-MIR-3606-3P99.1169.843254
HSA-MIR-5001-5P99.0566.761972
HSA-MIR-392698.9569.261438
HSA-MIR-5001-3P98.9167.281394
HSA-MIR-6829-5P98.8665.121480
HSA-MIR-361198.7668.761290
HSA-MIR-1211498.7063.45730
HSA-MIR-548S98.5067.171213
HSA-MIR-548AT-3P98.3764.98580
HSA-MIR-548AY-3P98.3765.14562

Literature-anchored findings (GeneRIF, showing 40)

  • domain c is required for the stabilization and maintenance of the chaperone function of PDI under extreme conditions (PMID:15358778)
  • data indicate that binding sites in three PDI domains, a, b’, and a’, contribute to efficient C-P4H tetramer assembly (PMID:15590633)
  • PDI can be S-nitrosated and PDI-SNO can be denitrosated by PDI suggesting that this enzyme could be intimately involved in the transport of intracellular NO equivalents to the cell surface. (PMID:15611098)
  • Data show that protein disulfide isomerase can switch its conformation from dimer to tetramer in its functions as a foldase. (PMID:15695804)
  • analysis of the 2-His-1-Asp active-site motif in prolyl 4-hydroxylase (PMID:19890397)
  • Functional PDI is rapidly secreted from human umbilical vein endothelial cells in culture upon activation with thrombin or after laser-induced stimulation. (PMID:20668226)
  • these data revealed a redox-regulated chaperone function of PDI in delivering antigenic peptides from TAP to MHC-I. (PMID:21299467)
  • TPM4, PDIA and SRC8 were also localized to the trophoblast cells, further highlighting the importance of these cytoskeletal remodelling proteins in early pregnancy (PMID:21373848)
  • A mixed disulfide complex was formed with the catalytic domain A1 from human PDI consistent with a model for cotranslational oxidative protein folding wherein PDI acts as a placeholder that is relieved by the pairing of cysteines caused by substrate folding. (PMID:23141538)
  • ). The results suggest that P4HB is a modifier gene inamyotrophic lateral sclerosis susceptibility and may represent a potential therapeutic target for amyotrophic lateral sclerosis . (PMID:23337974)
  • Elevated P4HB expression is associated with temozolomide resistance in malignant glioma. (PMID:23444257)
  • The crystal structure of the dimeric form of noncatalytic bb’ domains of human PDIA1 determined to 2.3 A resolution revealed that the formation of dimers occludes the substrate binding site. (PMID:24549644)
  • PDI has a role as a competent regulator and a specific substrate of Ero1alpha govern efficient and faithful oxidative protein folding and maintain the ER redox homeostasis (PMID:25258311)
  • Selective sequestration of PDI1A in a calcium depletion-mediated complex with the abundant chaperone calreticulin attenuates the effective concentration of this major lumenal thiol oxidant. (PMID:25575667)
  • Cole-Carpenter syndrome is caused by a specific de novo mutation in P4HB that impairs the disulfide isomerase activity of protein disulfide isomerase. (PMID:25683117)
  • Association of P4HB polymorphisms with sporadic amyotrophic lateral sclerosis susceptibility in the Chinese Han population. (PMID:26000911)
  • the effect of the endoplasmic reticulum chaperone protein disulfide isomerase (PDI) on beta-cell dysfunction, was examined. (PMID:26607804)
  • direct binding of PDIA1 to VWF, is reported. (PMID:26670633)
  • Amyotrophic lateral sclerosis-linked PDIA1 mutations disrupt motor neuron connectivity. (PMID:26869642)
  • These findings improve our understanding of PDI-protected aggregation of wild-type alpha-Syn and its H50Q familial mutant. (PMID:27142583)
  • a mechanism of dual Ero1alpha regulation by dynamic redox interactions between PDI and the two Ero1alpha flexible loops that harbor the regulatory cysteines. (PMID:27703014)
  • DIA1 was robustly secreted by physiological levels of arterial laminar shear in endothelial cells and supported alpha 5 integrin thiol oxidation. (PMID:28034831)
  • P4HB promotes hepatocellular carcinoma progression by down-regulating GRP78 expression and subsequently promoting epithelial-to-mesenchymal transition. (PMID:28052026)
  • analysis of antiplatelet activity of CxxC through binding to Cys400 in the PDI a0 domain, which can be further exploited as a model for sitedriven antithrombotic agent development (PMID:28109047)
  • analysis of how redox affects human protein disulfide isomerase regulate binding affinity of 17 beta-estradiol (PMID:28257787)
  • Kinetic-based trapping by intervening sequence variants of the active sites of protein-disulfide isomerase identifies platelet protein substrates. (PMID:28364042)
  • Current findings indicate that thiol isomerase-mediated disulfide bond modification in receptors and plasma proteins is an important layer of control of thrombosis and vascular function more generally. (PMID:28598864)
  • Peroxynitrite preferentially oxidizes the dithiol redox motifs of protein-disulfide isomerase. (PMID:29191937)
  • Study demonstrated that the expression of P4HB is frequently upregulated at the mRNA and protein levels in diffuse gliomas. Its high expression was significantly correlated with high Ki-67, more TP53 mutations and poor survival outcome. These findings imply that high expression of P4HB plays an important role in diffuse glioma progression. (PMID:29207176)
  • identify a potent and selective PDIA1 inhibitor, KSC-34, with 30-fold selectivity for the a site over the a’ site. KSC-34 displays time-dependent inhibition of PDIA1 reductase activity in vitro with a kinact/ KI of 9.66 x 10(3) M(-1) s(-1) and is selective for PDIA1 over other members of the PDI family, and other cellular cysteine-containing proteins. (PMID:29521097)
  • Overexpression of HIF-1alpha and P4HB is associated with poor prognosis in patients with gastric cancer. (PMID:29904245)
  • this study uncovers a molecular link between PDIA1 and Drp1 oxidoreduction. (PMID:29924999)
  • High P4HB expression is associated with colon cancer. (PMID:30431122)
  • Ras overactivation switches the pattern of PDIA1-dependent Rac1/Nox1 regulation, so that Ras-induced PDIA1 bypass can directly activate Rac1. PDIA1 may be a crucial regulator of redox-dependent adaptive processes related to cancer progression. (PMID:30760703)
  • The cell surface trafficking of PDIA1, PDIA3, and PDIA6 is dependent on KDELR1, which travels in a dynamic manner to the cell surface. This transport is assumed to result in PDI cell surface association, which differs from PDI inducible secretion into the extracellular space. (PMID:30958660)
  • PDI role in the unfolded protein response and DNA repair in the glioblastoma. (PMID:30996048)
  • circP4HB enhances EMT and metastatic NSCLC disease through miR-133a-5p sequestration, leading to upregulation of vimentin. (PMID:31005252)
  • Our results confirm that P4HB plays a significant role in the regulatory network of HIF-1a. Therefore, HIF-1alpha and P4HB may be considered potential biomarkers of Gastric cancer (GC). (PMID:31467922)
  • Compared with adjacent normal tissues, both the mRNA and protein levels of P4HB in ccRCC tissues were enhanced. (PMID:31640086)
  • Phosphorylation switches protein disulfide isomerase activity to maintain proteostasis and attenuate ER stress. (PMID:32149426)

Cross-species orthologs

11 orthologs

OrganismSymbolGene ID
danio_reriop4hbENSDARG00000105116
mus_musculusP4hbENSMUSG00000025130
rattus_norvegicusP4hbENSRNOG00000036689
drosophila_melanogasterERp60FBGN0033663
drosophila_melanogasterTmx3FBGN0036579
drosophila_melanogasterPdiFBGN0286818
caenorhabditis_elegansWBGENE00003962
caenorhabditis_elegansWBGENE00003963
caenorhabditis_eleganspdi-3WBGENE00003964
caenorhabditis_elegansM04D5.1WBGENE00014807
caenorhabditis_elegansZK973.11WBGENE00022836

Paralogs (13): ERP44 (ENSG00000023318), PDIA5 (ENSG00000065485), TMX4 (ENSG00000125827), ERP27 (ENSG00000139055), TMX1 (ENSG00000139921), PDIA6 (ENSG00000143870), TXNDC11 (ENSG00000153066), PDIA4 (ENSG00000155660), TMX3 (ENSG00000166479), PDIA3 (ENSG00000167004), PDILT (ENSG00000169340), PDIA2 (ENSG00000185615), TXNDC5 (ENSG00000239264)

Protein

Protein identifiers

Protein disulfide-isomeraseP07237 (reviewed: P07237)

Alternative names: Cellular thyroid hormone-binding protein, Prolyl 4-hydroxylase subunit beta, p55

All UniProt accessions (33): A0A024R8S5, A0A7P0T8C0, A0A7P0T8J3, A0A7P0T8X1, A0A7P0T940, A0A7P0T9D6, A0A7P0T9E3, A0A7P0T9K9, A0A7P0T9S9, A0A7P0T9U6, A0A7P0TA35, A0A7P0TA71, A0A7P0TA97, A0A7P0TAX9, A0A7P0TB26, A0A7P0TBA3, A0A7P0TBP8, A0A7P0Z476, A0A7P0Z4B2, A0A7P0Z4F8, A0A7P0Z4J0, A0A7P0Z4S2, B3KTQ9, P07237, H0Y3Z3, H7BZ94, I3L0S0, I3L1Y5, I3L3P5, I3L3U6, I3L4M2, I3L514, I3NI03

UniProt curated annotations — full annotation on UniProt →

Function. This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations and following phosphorylation by FAM20C, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts as a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP. Receptor for LGALS9; the interaction retains P4HB at the cell surface of Th2 T helper cells, increasing disulfide reductase activity at the plasma membrane, altering the plasma membrane redox state and enhancing cell migration.

Subunit / interactions. Heterodimer; heterodimerizes with the protein microsomal triglyceride transfer MTTP. Homodimer. Monomers and homotetramers may also occur. Interacts with P4HA2, forming a heterotetramer consisting of 2 alpha subunits (P4HA2) and 2 beta (P4HB), where P4HB plays the role of a structural subunit; this tetramer catalyzes the formation of 4-hydroxyproline in collagen. Also constitutes the structural subunit of the microsomal triacylglycerol transfer protein MTTP in mammalian cells. Stabilizes both enzymes and retain them in the ER without contributing to the catalytic activity. Binds UBQLN1. Interacts with ERO1B. Binds to CD4, and upon HIV-1 binding to the cell membrane, is part of a P4HB/PDI-CD4-CXCR4-gp120 complex. Interacts with ILDR2. Interacts with ERN1/IRE1A (via N-terminus); the interaction is enhanced by phosphorylation of P4HB by FAM20C in response to endoplasmic reticulum stress and results in attenuation of ERN1 activity.

Subcellular location. Endoplasmic reticulum. Endoplasmic reticulum lumen. Melanosome. Cell membrane.

Post-translational modifications. Phosphorylation of Ser-357 by FAM20C is induced by endoplasmic reticulum stress and results in a functional switch from oxidoreductase to molecular chaperone. It also promotes interaction with ERN1.

Disease relevance. Cole-Carpenter syndrome 1 (CLCRP1) [MIM:112240] A form of Cole-Carpenter syndrome, a disorder characterized by features of osteogenesis imperfecta such as bone deformities and severe bone fragility with frequent fractures, in association with craniosynostosis, ocular proptosis, hydrocephalus, growth failure and distinctive facial features. Craniofacial findings include marked frontal bossing, midface hypoplasia, and micrognathia. Despite the craniosynostosis and hydrocephalus, intellectual development is normal. CLCRP1 inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry.

Miscellaneous. Reduces and may activate fusogenic properties of HIV-1 gp120 surface protein, thereby enabling HIV-1 entry into the cell.

Similarity. Belongs to the protein disulfide isomerase family.

RefSeq proteins (1): NP_000909* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR005788PDI_thioredoxin-like_domDomain
IPR005792Prot_disulphide_isomeraseFamily
IPR013766Thioredoxin_domainDomain
IPR017937Thioredoxin_CSConserved_site
IPR036249Thioredoxin-like_sfHomologous_superfamily

Pfam: PF00085, PF13848

Enzyme classification (BRENDA):

  • EC 5.3.4.1 — protein disulfide-isomerase (BRENDA: 81 organisms, 481 substrates, 347 inhibitors, 35 Km, 6 kcat entries)

Substrate kinetics (BRENDA)

15 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.

SubstrateKm (mM)Measurements
CYSTEINE1–33
MYCOTHIOL-COUPLED HYDROXYETHYL DISULFIDE0.46–33.693
RIBONUCLEASE0.002–0.013
RNASE A0.007–0.053
2-MERCAPTOETHANOL0.2–0.82
DITHIOTHREITOL0.003–0.00542
GSH5–172
RNASE0.028–0.0632
SCRAMBLED RIBONUCLEASE0.0011–0.00332
DENATURED-REDUCED LYSOZYME0.02531
INSULIN2.0261
INSULIN-(SS)0.0051
SCRAMBLED REOXIDIZED LYSOZYME0.01161
SCRAMBLED RNASE0.021
SRNASE0

UniProt features (100 total): strand 31, helix 18, sequence conflict 12, turn 7, site 6, modified residue 6, mutagenesis site 6, active site 4, domain 2, disulfide bond 2, signal peptide 1, chain 1, sequence variant 1, region of interest 1, short sequence motif 1, compositionally biased region 1

Structure

Experimental structures (PDB)

14 structures.

PDBMethodResolution (Å)
8GDYX-RAY DIFFRACTION2.05
3BJ5X-RAY DIFFRACTION2.2
4JU5X-RAY DIFFRACTION2.28
3UEMX-RAY DIFFRACTION2.29
6I7SX-RAY DIFFRACTION2.5
4EKZX-RAY DIFFRACTION2.51
4EL1X-RAY DIFFRACTION2.88
8EOJELECTRON MICROSCOPY3.07
7ZSCX-RAY DIFFRACTION3.85
1BJXSOLUTION NMR
1MEKSOLUTION NMR
1X5CSOLUTION NMR
2BJXSOLUTION NMR
2K18SOLUTION NMR

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-P07237-F188.620.71

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (10): 400 (nucleophile); 54 (contributes to redox potential value); 55 (contributes to redox potential value); 120 (lowers pka of c-terminal cys of first active site); 398 (contributes to redox potential value); 399 (contributes to redox potential value); 461 (lowers pka of c-terminal cys of second active site); 53 (nucleophile); 56 (nucleophile); 397 (nucleophile)

Post-translational modifications (6): 200, 222, 271, 331, 357, 427

Disulfide bonds (2): 53–56, 397–400

Mutagenesis-validated functional residues (6):

PositionPhenotype
128reduced interaction with ern1. abolishes interaction with ern1; when associated with w-403.
331phosphomimetic mutant. does not affect enzyme or chaperone activity.
357abolishes phosphorylation at this site but protein is still phosphorylated at other sites. no changes in chaperone or en
357phosphomimetic mutant. reduced resistance to protease digestion, sugesting adoption of an open conformation. increased c
403reduced interaction with ern1. abolishes interaction with ern1; when associated with i-128.
427phosphomimetic mutant. does not affect enzyme or chaperone activity. does not increase binding to ern1.

Function

Pathways and Gene Ontology

Reactome pathways

12 pathways

IDPathway
R-HSA-1650814Collagen biosynthesis and modifying enzymes
R-HSA-264876Insulin processing
R-HSA-3299685Detoxification of Reactive Oxygen Species
R-HSA-381426Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
R-HSA-5358346Hedgehog ligand biogenesis
R-HSA-8866423VLDL assembly
R-HSA-8957275Post-translational protein phosphorylation
R-HSA-8963888Chylomicron assembly
R-HSA-8964041LDL remodeling
R-HSA-9020591Interleukin-12 signaling
R-HSA-9020933Interleukin-23 signaling
R-HSA-9918432Maturation of DENV proteins

MSigDB gene sets: 427 (showing top): MODULE_93, SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP, GRUETZMANN_PANCREATIC_CANCER_DN, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_RESPONSE_TO_PEPTIDE, MODULE_151, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GOBP_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS, GOBP_POSITIVE_REGULATION_OF_LYMPHOCYTE_MIGRATION, GOBP_REGULATION_OF_HORMONE_LEVELS, GOCC_CELL_SURFACE, MODULE_478, GOBP_POSITIVE_REGULATION_OF_SUBSTRATE_ADHESION_DEPENDENT_CELL_SPREADING

GO Biological Process (15): protein folding (GO:0006457), endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888), peptidyl-proline hydroxylation to 4-hydroxy-L-proline (GO:0018401), insulin processing (GO:0030070), protein folding in endoplasmic reticulum (GO:0034975), response to endoplasmic reticulum stress (GO:0034976), interleukin-12-mediated signaling pathway (GO:0035722), interleukin-23-mediated signaling pathway (GO:0038155), positive regulation of cell adhesion (GO:0045785), positive regulation of viral entry into host cell (GO:0046598), cellular response to hypoxia (GO:0071456), cellular response to interleukin-7 (GO:0098761), positive regulation of substrate adhesion-dependent cell spreading (GO:1900026), regulation of oxidative stress-induced intrinsic apoptotic signaling pathway (GO:1902175), positive regulation of T cell migration (GO:2000406)

GO Molecular Function (13): RNA binding (GO:0003723), protein disulfide isomerase activity (GO:0003756), actin binding (GO:0003779), procollagen-proline 4-dioxygenase activity (GO:0004656), integrin binding (GO:0005178), protein-disulfide reductase activity (GO:0015035), thiol oxidase activity (GO:0016972), enzyme binding (GO:0019899), protein heterodimerization activity (GO:0046982), protein binding (GO:0005515), isomerase activity (GO:0016853), protein-containing complex binding (GO:0044877), dioxygenase activity (GO:0051213)

GO Cellular Component (16): extracellular region (GO:0005576), endoplasmic reticulum (GO:0005783), endoplasmic reticulum lumen (GO:0005788), endoplasmic reticulum-Golgi intermediate compartment (GO:0005793), cytosol (GO:0005829), cytoskeleton (GO:0005856), focal adhesion (GO:0005925), external side of plasma membrane (GO:0009897), procollagen-proline 4-dioxygenase complex (GO:0016222), lamellipodium (GO:0030027), protein-containing complex (GO:0032991), endoplasmic reticulum chaperone complex (GO:0034663), melanosome (GO:0042470), extracellular exosome (GO:0070062), plasma membrane (GO:0005886), membrane (GO:0016020)

Reactome top-level categories

Rollup of top-10 pathways:

CategoryPathways
Plasma lipoprotein assembly2
Interleukin-12 family signaling2
Collagen formation1
Peptide hormone metabolism1
Cellular response to chemical stress1
Metabolism of proteins1
Signaling by Hedgehog1
Post-translational protein modification1
Plasma lipoprotein remodeling1
Dengue Virus Genome Translation and Replication1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cytoplasm4
cellular anatomical structure3
cellular response to stress2
cytokine-mediated signaling pathway2
catalytic activity, acting on a protein2
disulfide oxidoreductase activity2
binding2
intracellular membrane-bounded organelle2
endoplasmic reticulum protein-containing complex2
cellular process1
protein maturation1
intercellular transport1
intracellular transport1
Golgi vesicle transport1
modified amino acid metabolic process1
peptidyl-proline hydroxylation1
L-amino acid metabolic process1
non-proteinogenic amino acid metabolic process1
peptide hormone processing1
insulin metabolic process1
protein folding1
cellular response to interleukin-121
cell adhesion1
regulation of cell adhesion1
positive regulation of cellular process1
regulation of viral entry into host cell1
symbiont entry into host cell1
positive regulation by symbiont of entry into host1
positive regulation of viral life cycle1
response to hypoxia1
cellular response to decreased oxygen levels1
cellular response to cytokine stimulus1
response to interleukin-71
positive regulation of cell-substrate adhesion1
substrate adhesion-dependent cell spreading1
regulation of substrate adhesion-dependent cell spreading1
intrinsic apoptotic signaling pathway in response to oxidative stress1
regulation of intrinsic apoptotic signaling pathway1
T cell migration1
positive regulation of lymphocyte migration1

Protein interactions and networks

STRING

4045 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
P4HBP4HA1P13674979
P4HBP4HA2O15460974
P4HBHSPA5P11021952
P4HBCANXP27824945
P4HBP4HA3Q7Z4N8941
P4HBEGFP01133938
P4HBCALRP27797878
P4HBOS9Q13438840
P4HBSEL1LQ9UBV2836
P4HBHSP90B1P14625834
P4HBHSPA4P34932834
P4HBSYVN1Q86TM6822
P4HBVCPP55072820
P4HBPPIBP23284819
P4HBDERL2Q9GZP9805

IntAct

457 interactions, top by confidence:

ABTypeScore
RBM8ACASC3psi-mi:“MI:0914”(association)0.900
TAP1TAPBPpsi-mi:“MI:0914”(association)0.800
P4HA2P4HBpsi-mi:“MI:0915”(physical association)0.740
NDUFS3NDUFS8psi-mi:“MI:0914”(association)0.730
PRELID3BTRIAP1psi-mi:“MI:0914”(association)0.710
P4HBGRNpsi-mi:“MI:0915”(physical association)0.670
P4HA3FAM171A2psi-mi:“MI:0914”(association)0.640
LRFN4P4HBpsi-mi:“MI:0915”(physical association)0.560
CHCHD2P4HBpsi-mi:“MI:0915”(physical association)0.560
FZD10P4HBpsi-mi:“MI:0915”(physical association)0.560
P4HBLCE2Dpsi-mi:“MI:0915”(physical association)0.560
P4HBKRTAP4-11psi-mi:“MI:0915”(physical association)0.560
P4HBLCN2psi-mi:“MI:0915”(physical association)0.560
P4HBNTMpsi-mi:“MI:0915”(physical association)0.560
P4HBLRFN4psi-mi:“MI:0915”(physical association)0.560
P4HBODF1psi-mi:“MI:0915”(physical association)0.560
P4HBCHCHD2psi-mi:“MI:0915”(physical association)0.560
P4HBCNNM3psi-mi:“MI:0915”(physical association)0.560
P4HBZNF69psi-mi:“MI:0915”(physical association)0.560
P4HBNECTIN2psi-mi:“MI:0915”(physical association)0.560
P4HBKRTAP5-9psi-mi:“MI:0915”(physical association)0.560
P4HBPLCXD3psi-mi:“MI:0915”(physical association)0.560
CEP104CCDC66psi-mi:“MI:2364”(proximity)0.540
SYMPKCPSF4psi-mi:“MI:0914”(association)0.530
EBNA-LPHAX1psi-mi:“MI:0914”(association)0.530
P4HBZBTB2psi-mi:“MI:0914”(association)0.530
NEK7P4HA2psi-mi:“MI:0914”(association)0.510

BioGRID (609): P4HB (Two-hybrid), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Reconstituted Complex), P4HB (Affinity Capture-MS), SUCO (Affinity Capture-MS), ZNF292 (Affinity Capture-MS), P4HA2 (Affinity Capture-MS), ZBTB2 (Affinity Capture-MS), P4HB (Affinity Capture-MS)

ESM2 similar proteins: A2VE29, A6QLU8, D3Z6P0, H2N4I1, O00391, O08841, P04785, P05307, P07237, P08003, P09102, P09103, P13667, P21195, P30040, P38657, P38659, P57759, P81628, P97278, P97346, Q0VCM5, Q13087, Q14554, Q29052, Q2HWU2, Q2KIL5, Q499T2, Q4VIT4, Q503L9, Q5E936, Q5I0H9, Q5R5B6, Q5RCH2, Q5WA72, Q61702, Q67IX6, Q6DKJ4, Q6GM16, Q6IUU3

Diamond homologs: D3Z6P0, D4B2L8, O13704, O13811, O22263, O48773, O51890, P00275, P04785, P05307, P07237, P08003, P09102, P09103, P0A617, P0AGG4, P0AGG5, P0AGG6, P0AGG7, P10473, P11598, P13667, P21195, P23400, P27773, P29828, P30101, P34329, P38657, P38659, P38660, P38661, P46843, P52230, P52233, P52588, P52589, P54399, P55059, P73263

SIGNOR signaling

3 interactions.

AEffectBMechanism
P4HB“up-regulates quantity by stabilization”Collagenbinding
P4HB“down-regulates activity”ERN1binding
FAM20C“up-regulates activity”P4HBphosphorylation

Enriched among interaction partners

Reactome pathways and GO biological processes over-represented among this gene’s 160 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.

Reactome pathways:

PathwayPartnersFoldFDR
mRNA 3’-end processing712.5×7e-04
Mitochondrial protein degradation88.3×1e-03

Disease & clinical

Clinical variants and AI predictions

ClinVar

423 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic1
Likely pathogenic2
Uncertain significance177
Likely benign156
Benign53

Top pathogenic / likely-pathogenic (3)

Variant IDHGVSClassification
189337NM_000918.4(P4HB):c.1178A>G (p.Tyr393Cys)Pathogenic
1175197NM_000918.4(P4HB):c.236dup (p.Leu79fs)Likely pathogenic
2169599NM_000918.4(P4HB):c.1198T>C (p.Cys400Arg)Likely pathogenic

SpliceAI

1662 predictions. Top by Δscore:

VariantEffectΔscore
17:81844089:GATC:Gacceptor_gain1.0000
17:81844090:ATCC:Aacceptor_loss1.0000
17:81844091:TC:Tacceptor_gain1.0000
17:81844091:TCCT:Tacceptor_loss1.0000
17:81844092:CC:Cacceptor_gain1.0000
17:81844092:CCTG:Cacceptor_loss1.0000
17:81844093:C:CCacceptor_gain1.0000
17:81844094:T:Cacceptor_loss1.0000
17:81844098:A:ACacceptor_gain1.0000
17:81844098:A:Cacceptor_gain1.0000
17:81844101:C:CTacceptor_gain1.0000
17:81844102:A:Tacceptor_gain1.0000
17:81845142:A:ACdonor_gain1.0000
17:81845143:C:CCdonor_gain1.0000
17:81845143:CGT:Cdonor_gain1.0000
17:81845163:T:TAdonor_gain1.0000
17:81845227:TGACC:Tacceptor_loss1.0000
17:81845228:GACCT:Gacceptor_loss1.0000
17:81845229:ACC:Aacceptor_loss1.0000
17:81845230:CCTGT:Cacceptor_loss1.0000
17:81845231:C:CAacceptor_loss1.0000
17:81845232:T:Gacceptor_loss1.0000
17:81845559:ACCGT:Adonor_gain1.0000
17:81845560:CCGTC:Cdonor_gain1.0000
17:81845563:T:Adonor_gain1.0000
17:81845610:A:ACdonor_gain1.0000
17:81845611:C:CCdonor_gain1.0000
17:81845613:TTG:Tdonor_gain1.0000
17:81845739:GCAT:Gacceptor_gain1.0000
17:81845740:CAT:Cacceptor_gain1.0000

AlphaMissense

3394 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
17:81845209:G:TR461S1.000
17:81845598:G:TP441H1.000
17:81845599:G:AP441S1.000
17:81845600:G:CF440L1.000
17:81845600:G:TF440L1.000
17:81845601:A:CF440C1.000
17:81845602:A:GF440L1.000
17:81845630:G:CN430K1.000
17:81845630:G:TN430K1.000
17:81845701:A:GW407R1.000
17:81845701:A:TW407R1.000
17:81845720:G:CC400W1.000
17:81845721:C:AC400F1.000
17:81845721:C:TC400Y1.000
17:81845722:A:GC400R1.000
17:81845723:G:CH399Q1.000
17:81845723:G:TH399Q1.000
17:81845725:G:CH399D1.000
17:81845729:A:CC397W1.000
17:81845730:C:AC397F1.000
17:81845730:C:GC397S1.000
17:81845730:C:TC397Y1.000
17:81845731:A:GC397R1.000
17:81845731:A:TC397S1.000
17:81845732:C:AW396C1.000
17:81845732:C:GW396C1.000
17:81845734:A:GW396R1.000
17:81845734:A:TW396R1.000
17:81845739:G:TA394D1.000
17:81846573:G:CF304L1.000

dbSNP variants (sampled 300 via entrez): RS1000183609 (17:81854814 C>T), RS1000192969 (17:81857921 A>C), RS1000234519 (17:81855136 A>G), RS1000258567 (17:81860597 CCGCGCGCGCTGGCCGCGGCG>C,CCG,CCGCGCGCGCTGGCCGCGGCGCGCGCGCGCTGGCCGCGGCG,CCGCGCGCGCTGGCCGCGGCGCGCGCGCTGGCCGCGGCG), RS1000410127 (17:81859780 G>A,C), RS1000518078 (17:81853506 G>A,C), RS1000637508 (17:81843926 G>A), RS1000799552 (17:81858905 C>T), RS1000821729 (17:81849598 T>C,G), RS1000865622 (17:81859912 G>A,C), RS1001123372 (17:81859518 T>A,G), RS1001145475 (17:81858755 A>G), RS1001377524 (17:81845471 C>A,G,T), RS1001555130 (17:81846765 A>C), RS1001668523 (17:81852122 G>A,C)

Disease associations

OMIM: gene MIM:176790 | disease phenotypes: MIM:112240, MIM:166200

GenCC curated gene-disease

DiseaseClassificationInheritance
Cole-Carpenter syndrome 1StrongAutosomal dominant
Cole-Carpenter syndromeSupportiveAutosomal dominant
osteogenesis imperfecta type 1SupportiveAutosomal dominant

Mondo (4): Cole-Carpenter syndrome 1 (MONDO:0007204), osteogenesis imperfecta (MONDO:0019019), Cole-Carpenter syndrome (MONDO:0016085), osteogenesis imperfecta type 1 (MONDO:0008146)

Orphanet (2): Cole-Carpenter syndrome (Orphanet:2050), Osteogenesis imperfecta (Orphanet:666)

HPO phenotypes

39 total (30 of 39 shown, HPO-id order):

HPOTerm
HP:0000006Autosomal dominant inheritance
HP:0000238Hydrocephalus
HP:0000262Turricephaly
HP:0000347Micrognathia
HP:0000494Downslanted palpebral fissures
HP:0000520Proptosis
HP:0000586Shallow orbits
HP:0000592Blue sclerae
HP:0000682Abnormal dental enamel morphology
HP:0000684Delayed eruption of teeth
HP:0000691Microdontia
HP:0000703Dentinogenesis imperfecta
HP:0000772Abnormal rib morphology
HP:0000938Osteopenia
HP:0000944Abnormal metaphysis morphology
HP:0001252Hypotonia
HP:0001263Global developmental delay
HP:0001334Communicating hydrocephalus
HP:0001382Joint hypermobility
HP:0001511Intrauterine growth retardation
HP:0001608Abnormality of the voice
HP:0001620Abnormally high-pitched voice
HP:0002007Frontal bossing
HP:0002645Wormian bones
HP:0002650Scoliosis
HP:0002652Skeletal dysplasia
HP:0002757Recurrent fractures
HP:0002808Kyphosis
HP:0002953Vertebral compression fracture
HP:0003312Abnormal form of the vertebral bodies

GWAS associations

0 associations (top):

MeSH disease descriptors (2)

DescriptorNameTree numbers
D010013Osteogenesis ImperfectaC05.116.099.708.685; C16.320.737; C17.300.200.540
C535963Cole Carpenter syndrome (supp.)

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (2): CHEMBL2364681 (PROTEIN COMPLEX), CHEMBL5422 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,626 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL250450ISOQUERCETIN21,626

PharmGKB: 1 entry (VIP=true, CPIC=false)

Binding affinities (BindingDB)

16 measured of 53 human assays (53 total across all organisms); most potent 16 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
Juniferdin derivative, 1IC50156 nM
Juniferdin derivative, 13IC50167 nM
ethyl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylateIC50250 nMUS-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase
Juniferdin derivative, 3IC50453 nM
Juniferdin derivative, 10IC50565 nM
Juniferdin derivative, 4IC50627 nM
tert-butyl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylateIC50650 nMUS-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase
Juniferdin derivative, 5IC50693 nM
propan-2-yl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylateIC50850 nMUS-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase
Juniferdin derivative, 7IC50958 nM
Juniferdin derivative, 17IC501850 nM
ethyl 1-(3-chloro-4-hydroxybenzoyl)-4-(2-phenoxyethyl)piperidine-4-carboxylateIC502250 nMUS-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase
Juniferdin derivative, 14IC502530 nM
1-[(3-chloro-4-hydroxyphenyl)methyl]-N-ethyl-N-methyl-4-(2-phenoxyethyl)piperidine-4-carboxamideIC503000 nMUS-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase
1-[(3-chloro-4-hydroxyphenyl)methyl]-N-cyclopentyl-4-(2-phenoxyethyl)piperidine-4-carboxamideIC504000 nMUS-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase
1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)-N-phenylpiperidine-4-carboxamideIC5022500 nMUS-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase

ChEMBL bioactivities

250 potent at pChembl≥5 of 329 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
7.81AC5015.5nMCHEMBL1572115
7.64IC5023nMCHEMBL4748449
7.25AC5056.8nMCHEMBL2145932
7.24AC5057.3nMCHEMBL2145930
7.21Kd62nMCHEMBL4637290
7.14IC5072nMCHEMBL4786482
7.04IC5092nMCHEMBL1369923
6.96IC50110nMCHEMBL3741464
6.92IC50120nMCHEMBL4483086
6.90AC50125nMCHEMBL1987920
6.89IC50130nMCHEMBL4472710
6.89IC50130nMCHEMBL1319324
6.85IC50140nMCHEMBL4740031
6.82IC50150nMCHEMBL3703646
6.82IC50150nMCHEMBL1688556
6.80IC50160nMCHEMBL4459949
6.77IC50170nMCHEMBL4780610
6.77IC50170nMCHEMBL590899
6.77IC50170nMCHEMBL591855
6.75IC50180nMCHEMBL1557864
6.75IC50180nMCHEMBL4790355
6.72IC50190nMCHEMBL1536119
6.72IC50190nMCHEMBL600752
6.71AC50195nMCHEMBL2145895
6.68IC50210nMCHEMBL4446669
6.68IC50210nMCHEMBL4550951
6.64IC50230nMCHEMBL4472807
6.64IC50230nMCHEMBL1554780
6.64IC50230nMCHEMBL2323557
6.60IC50250nMCHEMBL1536119
6.57IC50270nMCHEMBL4799930
6.54IC50290nMCHEMBL4782811
6.54IC50290nMCHEMBL4763853
6.52IC50300nMCHEMBL1565145
6.52IC50300nMCHEMBL1979298
6.52IC50300nMCHEMBL4753733
6.50AC50318nMCHEMBL2145894
6.48IC50330nMCHEMBL1485589
6.47IC50340nMCHEMBL1360077
6.47IC50340nMCHEMBL4764068
6.46IC50350nMCHEMBL4464788
6.46IC50350nMCHEMBL1433812
6.46IC50350nMCHEMBL4755661
6.46IC50350nMCHEMBL4776190
6.44IC50360nMCHEMBL4745645
6.43IC50370nMCHEMBL1434798
6.42AC50376nMCHEMBL1402451
6.41IC50390nMCHEMBL4756890
6.41IC50390nMCHEMBL4747596
6.40IC50400nMCHEMBL4520508

PubChem BioAssay actives

214 with measured affinity, of 405 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
6-[1,3-benzodioxol-5-yl(pyrrolidin-1-yl)methyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.0230uM
2-[[4-(cyclopropanecarbonyl)piperazin-1-yl]methyl]-1,2-benzothiazol-3-one1650854: Reversible binding affinity to full length human N-terminal His6-tagged PDIA1 alpha domain (18 to 134 residues) expressed in Escherichia coli BL21 Gold (DE3) by isothermal titration calorimetrykd0.0620uM
6-[1,3-benzodioxol-5-yl-(pyridin-2-ylamino)methyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.0720uM
6-[(4-chlorophenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.0920uM
7-[anilino(phenyl)methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1100uM
methyl 3-[(E)-3-(3-hydroxyphenyl)-3-oxoprop-1-enyl]benzoate1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregationic500.1200uM
methyl 3-[(E)-3-[3-bromo-4-(hydroxymethyl)phenyl]-3-oxoprop-1-enyl]benzoate1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregationic500.1300uM
6-[(4-methoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1300uM
7-[(4-fluorophenyl)-[(4-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1400uM
7-[(4-nitroanilino)-phenylmethyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1500uM
7-[(3-hydroxy-4-methoxyphenyl)-[(4-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1500uM
[(2E,4R,9E)-4-hydroxy-2,5,5,9-tetramethylcycloundeca-2,9-dien-1-yl] 4-hydroxybenzoate1799701: Reductase Activity Assay from Article 10.1021/cb100387r: “Discovery of a small molecule PDI inhibitor that inhibits reduction of HIV-1 envelope glycoprotein gp120.”ic500.1560uM
4-[(E)-3-(3-cyanophenyl)prop-2-enoyl]-N,N-dipentylbenzenesulfonamide1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregationic500.1600uM
[(1R,4E,6R,11R)-6-hydroxy-4,7,7,11-tetramethyl-12-oxabicyclo[9.1.0]dodec-4-en-3-yl] 4-hydroxybenzoate1799701: Reductase Activity Assay from Article 10.1021/cb100387r: “Discovery of a small molecule PDI inhibitor that inhibits reduction of HIV-1 envelope glycoprotein gp120.”ic500.1670uM
7-[(4-chlorophenyl)-(pyridin-2-ylamino)methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1700uM
7-[(4-ethylphenyl)-(pyridin-2-ylamino)methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1700uM
6-[(4-hydroxy-3,5-dimethoxyphenyl)-(pyridin-2-ylamino)methyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1700uM
7-[(4-hydroxy-3,5-dimethoxyphenyl)-[(5-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1800uM
6-[pyrrolidin-1-yl-(3,4,5-trimethoxyphenyl)methyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1800uM
7-[(pyridin-2-ylamino)-(2,4,6-trimethylphenyl)methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.1900uM
6-[(2,2-difluoro-1,3-benzodioxol-5-yl)-piperidin-1-ylmethyl]-1-benzofuran-7-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2000uM
6-[piperidin-1-yl(pyridin-4-yl)methyl]-1-benzofuran-7-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2000uM
7-[[(4-methyl-2-pyridinyl)amino]-phenylmethyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2000uM
ethyl 2-[[(8-hydroxyquinolin-7-yl)-phenylmethyl]amino]benzoate1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2000uM
6-[1,3-benzodioxol-5-yl(morpholin-4-yl)methyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2000uM
6-[(4-fluorophenyl)-pyrrolidin-1-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2000uM
6-[[4-(dimethylamino)phenyl]-pyrrolidin-1-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2000uM
(E)-1-(3-hydroxyphenyl)-3-(4-pyridin-4-ylphenyl)prop-2-en-1-one1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregationic500.2100uM
4-[(E)-3-(3-fluoro-4-hydroxyphenyl)-3-oxoprop-1-enyl]benzonitrile1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregationic500.2100uM
(E)-3-[4-(benzimidazol-1-yl)phenyl]-1-(3-hydroxyphenyl)prop-2-en-1-one1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregationic500.2300uM
6-[(4-hydroxy-3-methoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2300uM
6-[(4-fluorophenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2300uM
ethyl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylate2034967: Non-covalent inhibition of PDI (unknown origin) by insulin aggregation assayic500.2500uM
6-[(4-fluorophenyl)-piperidin-1-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2700uM
4-[piperidin-1-yl-(4-pyrrol-1-ylphenyl)methyl]-1H-indazol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2900uM
6-[(4-fluorophenyl)-piperidin-1-ylmethyl]-2,3-dihydro-1,4-benzodioxin-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.2900uM
6-[piperidin-1-yl-[4-(trifluoromethyl)phenyl]methyl]-1-benzofuran-7-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3000uM
4-[[(8-hydroxyquinolin-7-yl)-phenylmethyl]amino]benzoic acid1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3000uM
6-[(3,4-dimethoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3000uM
6-[(2-methoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3300uM
4-[piperidin-1-yl-[4-(1,3-thiazol-2-yl)phenyl]methyl]-1H-indazol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3400uM
6-[(2-hydroxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3400uM
(E)-1-(3-hydroxyphenyl)-3-(4-pyridin-3-ylphenyl)prop-2-en-1-one1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregationic500.3500uM
4-[(4-fluorophenyl)-piperidin-1-ylmethyl]-1H-indazol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3500uM
7-[(3-fluorophenyl)-[(4-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3500uM
6-[1,3-benzodioxol-5-yl(piperidin-1-yl)methyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3500uM
6-[(2,4-dimethoxyphenyl)-pyrrolidin-1-ylmethyl]-1,3-benzodioxol-5-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3600uM
7-[(2-chloro-3-hydroxyphenyl)-(pyridin-2-ylamino)methyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3700uM
7-[(2,3-dimethoxyphenyl)-morpholin-4-ylmethyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3900uM
7-[(2-methoxyanilino)-phenylmethyl]quinolin-8-ol1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate additionic500.3900uM

CTD chemical–gene interactions

81 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
Tunicamycinincreases expression5
Cadmium Chloridedecreases expression, increases abundance, affects expression, affects cotreatment, increases expression4
bisphenol Aaffects expression, decreases expression, increases expression3
Tobacco Smoke Pollutionincreases metabolic processing, affects expression, increases expression3
Thapsigarginincreases expression3
chloropicrindecreases expression2
bisphenol Sdecreases methylation, increases expression2
Cadmiumaffects cotreatment, increases expression, decreases expression, increases abundance2
Copperaffects binding2
Zincaffects binding, increases expression2
Cyclosporineincreases expression2
aristolochic acid Idecreases expression1
ME-344increases expression1
bisphenol Fincreases expression1
beta-N-methylamino-L-alanineincreases expression1
bufotalinaffects expression1
myristicindecreases expression1
pyrogallol 1,3-dimethyl etheraffects cotreatment, affects localization, increases expression, decreases expression1
beta-lapachonedecreases expression1
sulforaphaneaffects binding1
sodium arsenitedecreases expression1
tetrabromobisphenol Adecreases expression1
N-phenylmaleimidedecreases reaction, increases reduction, decreases activity1
2,3-bis(3’-hydroxybenzyl)butyrolactoneaffects cotreatment, increases expression1
cupric oxidedecreases expression1
epigallocatechin gallateincreases expression1
phenylarsonous aciddecreases reaction, increases reduction, decreases activity1
di-n-butylphosphoric acidaffects expression1
cylindrospermopsindecreases expression1
nickel acetateaffects expression1

ChEMBL screening assays

69 unique, capped per target: 64 binding, 5 functional

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1964080FunctionalPUBCHEM_BIOASSAY: Turbidimetric Biochemical Primary HTS to identify inhibitors of Protein Disulfide Isomerase Measured in Biochemical System Using Plate Reader - 2137-01_Inhibitor_Dose_CherryPick_Activity. (Class of assay: confirmatory)PubChem BioAssay data set
CHEMBL3215127BindingPubChem BioAssay. Turbidometric Biochemical Primary HTS to identify inhibitors of Protein Disulfide Isomerase Measured in Biochemical System Using Plate Reader - 2137-01_Inhibitor_Dose_DryPowder_Activity_Set2. (Class of assay: confirmatorPubChem BioAssay data set

Cellosaurus cell lines

4 cell lines: 4 cancer cell line

First 10 cell lines (id-ordered, not curated):

CellosaurusNameCategorySex
CVCL_B1CJAbcam A-431 P4HB KOCancer cell lineFemale
CVCL_E2FRHAP1 P4HB (-) 1Cancer cell lineMale
CVCL_E2FSHAP1 P4HB (-) 2Cancer cell lineMale
CVCL_F1M9HyCyte A-549 KO-hP4HBCancer cell lineMale

Clinical trials (associated diseases)

77 trials via MONDO — disease-level, not drug-specific.

TrialPhaseStatusTitle
NCT00131469PHASE4COMPLETEDStudy of Teriparatide (FORTEO) to Treat Adults With Osteogenesis Imperfecta
NCT00159419PHASE4COMPLETEDBisphosphonate Therapy for Osteogenesis Imperfecta
NCT01713231PHASE4COMPLETEDEffect of High-Dose Vitamin D on Bone Density in Osteogenesis Imperfecta
NCT02303873PHASE4COMPLETEDEfficacy and Safety of Alendronate in Chinese Children or Adolescents With Osteogenesis Imperfecta
NCT03735537PHASE4COMPLETEDTreatment of Osteogenesis Imperfecta With Parathyroid Hormone and Zoledronic Acid
NCT04152551PHASE4RECRUITINGEffects of Bisphosphonates on OI-Related Hearing Loss
NCT00001305PHASE3COMPLETEDGrowth Hormone Therapy in Osteogenesis Imperfecta
NCT00005901PHASE3COMPLETEDPamidronate to Treat Osteogenesis Imperfecta in Children
NCT00106028PHASE3COMPLETEDSafety and Efficacy of Risedronate in the Treatment of Osteogenesis Imperfecta in Children
NCT00982124PHASE3COMPLETEDAn Efficacy and Safety Trial of Intravenous Zoledronic Acid in Infants Less Than One Year of Age, With Severe Osteogenesis Imperfecta
NCT02352753PHASE3TERMINATEDMulticenter,Single-arm Study to Evaluate Efficacy, Safety, & Pharmacokinetics of Denosumab in Children w/ OI
NCT03638128PHASE3TERMINATEDOpen-label Extension of Study 20130173 of Denosumab in Children and Young Adults With Osteogenesis Imperfecta
NCT05768854PHASE3ACTIVE_NOT_RECRUITINGSetrusumab vs Bisphosphonates in Pediatric Subjects With Osteogenesis Imperfecta
NCT05972551PHASE3ACTIVE_NOT_RECRUITINGStudy to Evaluate Efficacy and Safety of Romosozumab Compared With Bisphosphonates in Children and Adolescents With Osteogenesis Imperfecta
NCT06636071PHASE3ACTIVE_NOT_RECRUITINGSetrusumab in Pediatric Japanese Subjects With Osteogenesis Imperfecta
NCT07366086PHASE3RECRUITINGPediatric Safety Follow-up Study of Prior Treatment With Romosozumab for Osteogenesis Imperfecta
NCT00063479PHASE2COMPLETEDBisphosphonate Treatment of Osteogenesis Imperfecta
NCT00131118PHASE2COMPLETEDZoledronic Acid in Children (1 -17 Years) With Severe Osteogenesis Imperfecta
NCT01417091PHASE2COMPLETEDSafety, Pharmacokinetics and Pharmacodynamics of BPS804 in Osteogenesis Imperfecta
NCT01679080PHASE2TERMINATEDThe Effect of Treatment With Teriparatide and Zoledronic Acid in Patients With Osteogenesis Imperfecta
NCT01799798PHASE2COMPLETEDTranslational Therapy in Patients With Osteogenesis Imperfecta - A Pilot Trial on Treatment With the Rankl-Antibody Denosumab
NCT03208582PHASE2COMPLETEDDo Bisphosphonates Alter the Skeletal Response to Mechanical Stimulation in Children With Osteogenesis Imperfecta?
NCT03216486PHASE2WITHDRAWNAn Exploratory Study of BPS804 Treatment in Adult Patients With Type I, III or IV Osteogenesis Imperfecta
NCT05312697PHASE2TERMINATEDLong-term Extension Study of Setrusumab in Adults With Type I, III, or IV Osteogenesis Imperfecta
NCT07062588PHASE2RECRUITINGOsteogenesis Imperfecta Trial of AGA2115 for ADUlts With COL1A1 and/or COL1A2 GeNetic Variations (IDUN)
NCT07557446PHASE2NOT_YET_RECRUITINGA Dose REgimen-Finding Study of AGA2115 in Chinese Patients With Osteogenesis ImpeRfecta (EIR)
NCT00705120PHASE1COMPLETEDTreatment of Severe Osteogenesis Imperfecta by Allogeneic Bone Marrow Transplantation
NCT02172885PHASE1COMPLETEDMesenchymal Stem Cell Based Therapy for the Treatment of Osteogenesis Imperfecta
NCT03064074PHASE1COMPLETEDSafety of Fresolimumab in the Treatment of Osteogenesis Imperfecta
NCT04545554PHASE1COMPLETEDStudy to Evaluate Romosozumab in Children and Adolescents With Osteogenesis Imperfecta
NCT05231668PHASE1TERMINATEDSingle Ascending Dose Study of SAR439459 in Adults With Osteogenesis Imperfecta (OI)
NCT06086613PHASE1COMPLETEDA First-in-Human Study Evaluating AGA2115 in Adult Healthy Volunteers
NCT05125809PHASE2/PHASE3ACTIVE_NOT_RECRUITINGSetrusumab vs Placebo for Osteogenesis Imperfecta
NCT03706482PHASE1/PHASE2ACTIVE_NOT_RECRUITINGBoost Brittle Bones Before Birth
NCT04623606PHASE1/PHASE2UNKNOWNBoost to Brittle Bones - Stem Cell Transplantation for Treatment of Brittle Bones
NCT05559801PHASE1/PHASE2NOT_YET_RECRUITINGMesenchymal Cell Therapy in Osteogenesis Imperfecta (OI)
NCT00001594Not specifiedCOMPLETEDEvaluation and Intervention for the Effects of Osteogenesis Imperfecta
NCT00076830Not specifiedCOMPLETEDEvaluation and Treatment of Patients With Connective Tissue Disease
NCT00187018Not specifiedCOMPLETEDMarrow Mesenchymal Cell Therapy for Osteogenesis Imperfecta: A Pilot Study
NCT00655681Not specifiedCOMPLETEDPrevention of Post Operative Bone Loss in Children