P4HB
gene geneOn this page
Also known as PDIA1PROHBDSIGITPDIPO4HBP4Hbeta
Summary
P4HB (prolyl 4-hydroxylase subunit beta, HGNC:8548) is a protein-coding gene on chromosome 17q25.3, encoding Protein disulfide-isomerase (P07237). This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds.
This gene encodes the beta subunit of prolyl 4-hydroxylase, a highly abundant multifunctional enzyme that belongs to the protein disulfide isomerase family. When present as a tetramer consisting of two alpha and two beta subunits, this enzyme is involved in hydroxylation of prolyl residues in preprocollagen. This enzyme is also a disulfide isomerase containing two thioredoxin domains that catalyze the formation, breakage and rearrangement of disulfide bonds. Other known functions include its ability to act as a chaperone that inhibits aggregation of misfolded proteins in a concentration-dependent manner, its ability to bind thyroid hormone, its role in both the influx and efflux of S-nitrosothiol-bound nitric oxide, and its function as a subunit of the microsomal triglyceride transfer protein complex.
Source: NCBI Gene 5034 — RefSeq curated summary.
At a glance
- Gene–disease (curated): Cole-Carpenter syndrome 1 (Strong, GenCC) — +2 more curated relationships
- Clinical variants (ClinVar): 423 total — 1 pathogenic, 2 likely-pathogenic
- Phenotypes (HPO): 39
- Druggable target: yes — 1 molecules with ChEMBL bioactivity
- MANE Select transcript:
NM_000918
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8548 |
| Approved symbol | P4HB |
| Name | prolyl 4-hydroxylase subunit beta |
| Location | 17q25.3 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PDIA1, PROHB, DSI, GIT, PDI, PO4HB, P4Hbeta |
| Ensembl gene | ENSG00000185624 |
| Ensembl biotype | protein_coding |
| OMIM | 176790 |
| Entrez | 5034 |
Gene structure
Transcript identifiers
Ensembl transcripts: 84 — 29 protein_coding, 28 retained_intron, 24 nonsense_mediated_decay, 3 protein_coding_CDS_not_defined
ENST00000331483, ENST00000415593, ENST00000439918, ENST00000466567, ENST00000467086, ENST00000471535, ENST00000472244, ENST00000473021, ENST00000474712, ENST00000476482, ENST00000477607, ENST00000478034, ENST00000484286, ENST00000570907, ENST00000571507, ENST00000571617, ENST00000573778, ENST00000574007, ENST00000574914, ENST00000575069, ENST00000576052, ENST00000576380, ENST00000576390, ENST00000576541, ENST00000679366, ENST00000679396, ENST00000679439, ENST00000679455, ENST00000679470, ENST00000679628, ENST00000679688, ENST00000679889, ENST00000680076, ENST00000680083, ENST00000680105, ENST00000680191, ENST00000680208, ENST00000680226, ENST00000680259, ENST00000680368, ENST00000680400, ENST00000680416, ENST00000680547, ENST00000680559, ENST00000680593, ENST00000680719, ENST00000680732, ENST00000680799, ENST00000680838, ENST00000680846, ENST00000680847, ENST00000680884, ENST00000680909, ENST00000680914, ENST00000681020, ENST00000681030, ENST00000681031, ENST00000681068, ENST00000681161, ENST00000681259, ENST00000681420, ENST00000681485, ENST00000681515, ENST00000681566, ENST00000681571, ENST00000681614, ENST00000681693, ENST00000681760, ENST00000681835, ENST00000681872, ENST00000681933, ENST00000681954, ENST00000889211, ENST00000889212, ENST00000889213, ENST00000889214, ENST00000936206, ENST00000936207, ENST00000936208, ENST00000936209, ENST00000948310, ENST00000948311, ENST00000948312, ENST00000948313
RefSeq mRNA: 1 — MANE Select: NM_000918
NM_000918
CCDS: CCDS11787
Canonical transcript exons
ENST00000331483 — 11 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001769876 | 81843166 | 81844092 |
| ENSE00002683270 | 81860327 | 81860535 |
| ENSE00003489757 | 81859181 | 81859387 |
| ENSE00003517743 | 81847243 | 81847347 |
| ENSE00003556958 | 81855142 | 81855279 |
| ENSE00003569967 | 81846947 | 81847072 |
| ENSE00003581440 | 81845561 | 81845742 |
| ENSE00003593761 | 81855453 | 81855586 |
| ENSE00003635986 | 81845144 | 81845230 |
| ENSE00003669280 | 81845871 | 81845991 |
| ENSE00003684986 | 81846429 | 81846629 |
Expression profiles
Bgee: expression breadth ubiquitous, 293 present calls, max score 99.86.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 329.8390 / max 5195.1495, expressed in 1827 samples.
FANTOM5 promoters (14 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 168815 | 316.6750 | 1827 |
| 168804 | 2.4193 | 1066 |
| 168810 | 1.6878 | 1082 |
| 168796 | 1.5946 | 912 |
| 168813 | 1.1998 | 770 |
| 168802 | 1.1679 | 762 |
| 168807 | 0.9088 | 584 |
| 168811 | 0.8088 | 497 |
| 168814 | 0.7543 | 456 |
| 168809 | 0.7433 | 474 |
Top tissues by expression
294 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| stromal cell of endometrium | CL:0002255 | 99.86 | gold quality |
| parotid gland | UBERON:0001831 | 99.84 | gold quality |
| jejunal mucosa | UBERON:0000399 | 99.75 | gold quality |
| body of pancreas | UBERON:0001150 | 99.75 | gold quality |
| ileal mucosa | UBERON:0000331 | 99.71 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.70 | gold quality |
| right lobe of liver | UBERON:0001114 | 99.70 | gold quality |
| duodenum | UBERON:0002114 | 99.65 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 99.57 | gold quality |
| endometrium epithelium | UBERON:0004811 | 99.56 | gold quality |
| pancreas | UBERON:0001264 | 99.54 | gold quality |
| lower esophagus mucosa | UBERON:0035834 | 99.54 | gold quality |
| type B pancreatic cell | CL:0000169 | 99.53 | gold quality |
| adenohypophysis | UBERON:0002196 | 99.53 | gold quality |
| left adrenal gland | UBERON:0001234 | 99.52 | gold quality |
| minor salivary gland | UBERON:0001830 | 99.52 | gold quality |
| right adrenal gland | UBERON:0001233 | 99.50 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 99.50 | gold quality |
| pituitary gland | UBERON:0000007 | 99.49 | gold quality |
| liver | UBERON:0002107 | 99.49 | gold quality |
| skin of leg | UBERON:0001511 | 99.48 | gold quality |
| mouth mucosa | UBERON:0003729 | 99.48 | gold quality |
| adrenal tissue | UBERON:0018303 | 99.48 | gold quality |
| adrenal gland | UBERON:0002369 | 99.47 | gold quality |
| esophagus mucosa | UBERON:0002469 | 99.47 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 99.46 | gold quality |
| skin of abdomen | UBERON:0001416 | 99.45 | gold quality |
| body of stomach | UBERON:0001161 | 99.44 | gold quality |
| mucosa of transverse colon | UBERON:0004991 | 99.43 | gold quality |
| adrenal cortex | UBERON:0001235 | 99.41 | gold quality |
Single-cell (SCXA)
Detected in 16 experiment(s), a significant marker in 13.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-GEOD-100618 | yes | 1313.30 |
| E-HCAD-5 | yes | 952.22 |
| E-MTAB-9467 | yes | 55.06 |
| E-CURD-122 | yes | 45.77 |
| E-HCAD-10 | yes | 30.54 |
| E-MTAB-9067 | yes | 21.79 |
| E-MTAB-5061 | yes | 18.47 |
| E-CURD-112 | yes | 15.83 |
| E-HCAD-13 | yes | 11.68 |
| E-CURD-46 | yes | 11.03 |
| E-MTAB-10042 | yes | 8.77 |
| E-HCAD-1 | yes | 8.64 |
| E-MTAB-7303 | no | 2341.16 |
| E-CURD-97 | no | 544.96 |
| E-MTAB-9801 | no | 4.18 |
Regulation
Is transcription factor: no
Upstream regulators (CollecTRI, top): ESR1
miRNA regulators (miRDB)
39 targeting P4HB, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-6856-5P | 100.00 | 65.47 | 1298 |
| HSA-MIR-6758-5P | 100.00 | 66.21 | 1470 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-12136 | 99.98 | 72.81 | 5713 |
| HSA-MIR-548N | 99.98 | 71.94 | 4170 |
| HSA-MIR-5680 | 99.91 | 69.83 | 3421 |
| HSA-MIR-1305 | 99.91 | 71.43 | 3443 |
| HSA-MIR-548E-5P | 99.89 | 72.73 | 4486 |
| HSA-MIR-4492 | 99.87 | 68.25 | 3611 |
| HSA-MIR-5002-5P | 99.76 | 70.84 | 1763 |
| HSA-MIR-670-5P | 99.67 | 69.94 | 1565 |
| HSA-MIR-548AV-5P | 99.60 | 70.84 | 2107 |
| HSA-MIR-548K | 99.60 | 70.84 | 2107 |
| HSA-MIR-762 | 99.58 | 66.61 | 1994 |
| HSA-MIR-8054 | 99.48 | 70.81 | 2084 |
| HSA-MIR-4498 | 99.47 | 67.42 | 2360 |
| HSA-MIR-513A-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-513C-3P | 99.39 | 70.63 | 3620 |
| HSA-MIR-4292 | 99.16 | 65.57 | 1767 |
| HSA-MIR-6791-5P | 99.16 | 65.92 | 1844 |
| HSA-MIR-3606-3P | 99.11 | 69.84 | 3254 |
| HSA-MIR-5001-5P | 99.05 | 66.76 | 1972 |
| HSA-MIR-3926 | 98.95 | 69.26 | 1438 |
| HSA-MIR-5001-3P | 98.91 | 67.28 | 1394 |
| HSA-MIR-6829-5P | 98.86 | 65.12 | 1480 |
| HSA-MIR-3611 | 98.76 | 68.76 | 1290 |
| HSA-MIR-12114 | 98.70 | 63.45 | 730 |
| HSA-MIR-548S | 98.50 | 67.17 | 1213 |
| HSA-MIR-548AT-3P | 98.37 | 64.98 | 580 |
| HSA-MIR-548AY-3P | 98.37 | 65.14 | 562 |
Literature-anchored findings (GeneRIF, showing 40)
- domain c is required for the stabilization and maintenance of the chaperone function of PDI under extreme conditions (PMID:15358778)
- data indicate that binding sites in three PDI domains, a, b’, and a’, contribute to efficient C-P4H tetramer assembly (PMID:15590633)
- PDI can be S-nitrosated and PDI-SNO can be denitrosated by PDI suggesting that this enzyme could be intimately involved in the transport of intracellular NO equivalents to the cell surface. (PMID:15611098)
- Data show that protein disulfide isomerase can switch its conformation from dimer to tetramer in its functions as a foldase. (PMID:15695804)
- analysis of the 2-His-1-Asp active-site motif in prolyl 4-hydroxylase (PMID:19890397)
- Functional PDI is rapidly secreted from human umbilical vein endothelial cells in culture upon activation with thrombin or after laser-induced stimulation. (PMID:20668226)
- these data revealed a redox-regulated chaperone function of PDI in delivering antigenic peptides from TAP to MHC-I. (PMID:21299467)
- TPM4, PDIA and SRC8 were also localized to the trophoblast cells, further highlighting the importance of these cytoskeletal remodelling proteins in early pregnancy (PMID:21373848)
- A mixed disulfide complex was formed with the catalytic domain A1 from human PDI consistent with a model for cotranslational oxidative protein folding wherein PDI acts as a placeholder that is relieved by the pairing of cysteines caused by substrate folding. (PMID:23141538)
- ). The results suggest that P4HB is a modifier gene inamyotrophic lateral sclerosis susceptibility and may represent a potential therapeutic target for amyotrophic lateral sclerosis . (PMID:23337974)
- Elevated P4HB expression is associated with temozolomide resistance in malignant glioma. (PMID:23444257)
- The crystal structure of the dimeric form of noncatalytic bb’ domains of human PDIA1 determined to 2.3 A resolution revealed that the formation of dimers occludes the substrate binding site. (PMID:24549644)
- PDI has a role as a competent regulator and a specific substrate of Ero1alpha govern efficient and faithful oxidative protein folding and maintain the ER redox homeostasis (PMID:25258311)
- Selective sequestration of PDI1A in a calcium depletion-mediated complex with the abundant chaperone calreticulin attenuates the effective concentration of this major lumenal thiol oxidant. (PMID:25575667)
- Cole-Carpenter syndrome is caused by a specific de novo mutation in P4HB that impairs the disulfide isomerase activity of protein disulfide isomerase. (PMID:25683117)
- Association of P4HB polymorphisms with sporadic amyotrophic lateral sclerosis susceptibility in the Chinese Han population. (PMID:26000911)
- the effect of the endoplasmic reticulum chaperone protein disulfide isomerase (PDI) on beta-cell dysfunction, was examined. (PMID:26607804)
- direct binding of PDIA1 to VWF, is reported. (PMID:26670633)
- Amyotrophic lateral sclerosis-linked PDIA1 mutations disrupt motor neuron connectivity. (PMID:26869642)
- These findings improve our understanding of PDI-protected aggregation of wild-type alpha-Syn and its H50Q familial mutant. (PMID:27142583)
- a mechanism of dual Ero1alpha regulation by dynamic redox interactions between PDI and the two Ero1alpha flexible loops that harbor the regulatory cysteines. (PMID:27703014)
- DIA1 was robustly secreted by physiological levels of arterial laminar shear in endothelial cells and supported alpha 5 integrin thiol oxidation. (PMID:28034831)
- P4HB promotes hepatocellular carcinoma progression by down-regulating GRP78 expression and subsequently promoting epithelial-to-mesenchymal transition. (PMID:28052026)
- analysis of antiplatelet activity of CxxC through binding to Cys400 in the PDI a0 domain, which can be further exploited as a model for sitedriven antithrombotic agent development (PMID:28109047)
- analysis of how redox affects human protein disulfide isomerase regulate binding affinity of 17 beta-estradiol (PMID:28257787)
- Kinetic-based trapping by intervening sequence variants of the active sites of protein-disulfide isomerase identifies platelet protein substrates. (PMID:28364042)
- Current findings indicate that thiol isomerase-mediated disulfide bond modification in receptors and plasma proteins is an important layer of control of thrombosis and vascular function more generally. (PMID:28598864)
- Peroxynitrite preferentially oxidizes the dithiol redox motifs of protein-disulfide isomerase. (PMID:29191937)
- Study demonstrated that the expression of P4HB is frequently upregulated at the mRNA and protein levels in diffuse gliomas. Its high expression was significantly correlated with high Ki-67, more TP53 mutations and poor survival outcome. These findings imply that high expression of P4HB plays an important role in diffuse glioma progression. (PMID:29207176)
- identify a potent and selective PDIA1 inhibitor, KSC-34, with 30-fold selectivity for the a site over the a’ site. KSC-34 displays time-dependent inhibition of PDIA1 reductase activity in vitro with a kinact/ KI of 9.66 x 10(3) M(-1) s(-1) and is selective for PDIA1 over other members of the PDI family, and other cellular cysteine-containing proteins. (PMID:29521097)
- Overexpression of HIF-1alpha and P4HB is associated with poor prognosis in patients with gastric cancer. (PMID:29904245)
- this study uncovers a molecular link between PDIA1 and Drp1 oxidoreduction. (PMID:29924999)
- High P4HB expression is associated with colon cancer. (PMID:30431122)
- Ras overactivation switches the pattern of PDIA1-dependent Rac1/Nox1 regulation, so that Ras-induced PDIA1 bypass can directly activate Rac1. PDIA1 may be a crucial regulator of redox-dependent adaptive processes related to cancer progression. (PMID:30760703)
- The cell surface trafficking of PDIA1, PDIA3, and PDIA6 is dependent on KDELR1, which travels in a dynamic manner to the cell surface. This transport is assumed to result in PDI cell surface association, which differs from PDI inducible secretion into the extracellular space. (PMID:30958660)
- PDI role in the unfolded protein response and DNA repair in the glioblastoma. (PMID:30996048)
- circP4HB enhances EMT and metastatic NSCLC disease through miR-133a-5p sequestration, leading to upregulation of vimentin. (PMID:31005252)
- Our results confirm that P4HB plays a significant role in the regulatory network of HIF-1a. Therefore, HIF-1alpha and P4HB may be considered potential biomarkers of Gastric cancer (GC). (PMID:31467922)
- Compared with adjacent normal tissues, both the mRNA and protein levels of P4HB in ccRCC tissues were enhanced. (PMID:31640086)
- Phosphorylation switches protein disulfide isomerase activity to maintain proteostasis and attenuate ER stress. (PMID:32149426)
Cross-species orthologs
11 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | p4hb | ENSDARG00000105116 |
| mus_musculus | P4hb | ENSMUSG00000025130 |
| rattus_norvegicus | P4hb | ENSRNOG00000036689 |
| drosophila_melanogaster | ERp60 | FBGN0033663 |
| drosophila_melanogaster | Tmx3 | FBGN0036579 |
| drosophila_melanogaster | Pdi | FBGN0286818 |
| caenorhabditis_elegans | WBGENE00003962 | |
| caenorhabditis_elegans | WBGENE00003963 | |
| caenorhabditis_elegans | pdi-3 | WBGENE00003964 |
| caenorhabditis_elegans | M04D5.1 | WBGENE00014807 |
| caenorhabditis_elegans | ZK973.11 | WBGENE00022836 |
Paralogs (13): ERP44 (ENSG00000023318), PDIA5 (ENSG00000065485), TMX4 (ENSG00000125827), ERP27 (ENSG00000139055), TMX1 (ENSG00000139921), PDIA6 (ENSG00000143870), TXNDC11 (ENSG00000153066), PDIA4 (ENSG00000155660), TMX3 (ENSG00000166479), PDIA3 (ENSG00000167004), PDILT (ENSG00000169340), PDIA2 (ENSG00000185615), TXNDC5 (ENSG00000239264)
Protein
Protein identifiers
Protein disulfide-isomerase — P07237 (reviewed: P07237)
Alternative names: Cellular thyroid hormone-binding protein, Prolyl 4-hydroxylase subunit beta, p55
All UniProt accessions (33): A0A024R8S5, A0A7P0T8C0, A0A7P0T8J3, A0A7P0T8X1, A0A7P0T940, A0A7P0T9D6, A0A7P0T9E3, A0A7P0T9K9, A0A7P0T9S9, A0A7P0T9U6, A0A7P0TA35, A0A7P0TA71, A0A7P0TA97, A0A7P0TAX9, A0A7P0TB26, A0A7P0TBA3, A0A7P0TBP8, A0A7P0Z476, A0A7P0Z4B2, A0A7P0Z4F8, A0A7P0Z4J0, A0A7P0Z4S2, B3KTQ9, P07237, H0Y3Z3, H7BZ94, I3L0S0, I3L1Y5, I3L3P5, I3L3U6, I3L4M2, I3L514, I3NI03
UniProt curated annotations — full annotation on UniProt →
Function. This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations and following phosphorylation by FAM20C, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts as a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP. Receptor for LGALS9; the interaction retains P4HB at the cell surface of Th2 T helper cells, increasing disulfide reductase activity at the plasma membrane, altering the plasma membrane redox state and enhancing cell migration.
Subunit / interactions. Heterodimer; heterodimerizes with the protein microsomal triglyceride transfer MTTP. Homodimer. Monomers and homotetramers may also occur. Interacts with P4HA2, forming a heterotetramer consisting of 2 alpha subunits (P4HA2) and 2 beta (P4HB), where P4HB plays the role of a structural subunit; this tetramer catalyzes the formation of 4-hydroxyproline in collagen. Also constitutes the structural subunit of the microsomal triacylglycerol transfer protein MTTP in mammalian cells. Stabilizes both enzymes and retain them in the ER without contributing to the catalytic activity. Binds UBQLN1. Interacts with ERO1B. Binds to CD4, and upon HIV-1 binding to the cell membrane, is part of a P4HB/PDI-CD4-CXCR4-gp120 complex. Interacts with ILDR2. Interacts with ERN1/IRE1A (via N-terminus); the interaction is enhanced by phosphorylation of P4HB by FAM20C in response to endoplasmic reticulum stress and results in attenuation of ERN1 activity.
Subcellular location. Endoplasmic reticulum. Endoplasmic reticulum lumen. Melanosome. Cell membrane.
Post-translational modifications. Phosphorylation of Ser-357 by FAM20C is induced by endoplasmic reticulum stress and results in a functional switch from oxidoreductase to molecular chaperone. It also promotes interaction with ERN1.
Disease relevance. Cole-Carpenter syndrome 1 (CLCRP1) [MIM:112240] A form of Cole-Carpenter syndrome, a disorder characterized by features of osteogenesis imperfecta such as bone deformities and severe bone fragility with frequent fractures, in association with craniosynostosis, ocular proptosis, hydrocephalus, growth failure and distinctive facial features. Craniofacial findings include marked frontal bossing, midface hypoplasia, and micrognathia. Despite the craniosynostosis and hydrocephalus, intellectual development is normal. CLCRP1 inheritance is autosomal dominant. The disease is caused by variants affecting the gene represented in this entry.
Miscellaneous. Reduces and may activate fusogenic properties of HIV-1 gp120 surface protein, thereby enabling HIV-1 entry into the cell.
Similarity. Belongs to the protein disulfide isomerase family.
RefSeq proteins (1): NP_000909* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR005788 | PDI_thioredoxin-like_dom | Domain |
| IPR005792 | Prot_disulphide_isomerase | Family |
| IPR013766 | Thioredoxin_domain | Domain |
| IPR017937 | Thioredoxin_CS | Conserved_site |
| IPR036249 | Thioredoxin-like_sf | Homologous_superfamily |
Pfam: PF00085, PF13848
Enzyme classification (BRENDA):
- EC 5.3.4.1 — protein disulfide-isomerase (BRENDA: 81 organisms, 481 substrates, 347 inhibitors, 35 Km, 6 kcat entries)
Substrate kinetics (BRENDA)
15 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| CYSTEINE | 1–3 | 3 |
| MYCOTHIOL-COUPLED HYDROXYETHYL DISULFIDE | 0.46–33.69 | 3 |
| RIBONUCLEASE | 0.002–0.01 | 3 |
| RNASE A | 0.007–0.05 | 3 |
| 2-MERCAPTOETHANOL | 0.2–0.8 | 2 |
| DITHIOTHREITOL | 0.003–0.0054 | 2 |
| GSH | 5–17 | 2 |
| RNASE | 0.028–0.063 | 2 |
| SCRAMBLED RIBONUCLEASE | 0.0011–0.0033 | 2 |
| DENATURED-REDUCED LYSOZYME | 0.0253 | 1 |
| INSULIN | 2.026 | 1 |
| INSULIN-(SS) | 0.005 | 1 |
| SCRAMBLED REOXIDIZED LYSOZYME | 0.0116 | 1 |
| SCRAMBLED RNASE | 0.02 | 1 |
| SRNASE | — | 0 |
UniProt features (100 total): strand 31, helix 18, sequence conflict 12, turn 7, site 6, modified residue 6, mutagenesis site 6, active site 4, domain 2, disulfide bond 2, signal peptide 1, chain 1, sequence variant 1, region of interest 1, short sequence motif 1, compositionally biased region 1
Structure
Experimental structures (PDB)
14 structures.
| PDB | Method | Resolution (Å) |
|---|---|---|
| 8GDY | X-RAY DIFFRACTION | 2.05 |
| 3BJ5 | X-RAY DIFFRACTION | 2.2 |
| 4JU5 | X-RAY DIFFRACTION | 2.28 |
| 3UEM | X-RAY DIFFRACTION | 2.29 |
| 6I7S | X-RAY DIFFRACTION | 2.5 |
| 4EKZ | X-RAY DIFFRACTION | 2.51 |
| 4EL1 | X-RAY DIFFRACTION | 2.88 |
| 8EOJ | ELECTRON MICROSCOPY | 3.07 |
| 7ZSC | X-RAY DIFFRACTION | 3.85 |
| 1BJX | SOLUTION NMR | |
| 1MEK | SOLUTION NMR | |
| 1X5C | SOLUTION NMR | |
| 2BJX | SOLUTION NMR | |
| 2K18 | SOLUTION NMR |
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P07237-F1 | 88.62 | 0.71 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Catalytic / active sites (10): 400 (nucleophile); 54 (contributes to redox potential value); 55 (contributes to redox potential value); 120 (lowers pka of c-terminal cys of first active site); 398 (contributes to redox potential value); 399 (contributes to redox potential value); 461 (lowers pka of c-terminal cys of second active site); 53 (nucleophile); 56 (nucleophile); 397 (nucleophile)
Post-translational modifications (6): 200, 222, 271, 331, 357, 427
Disulfide bonds (2): 53–56, 397–400
Mutagenesis-validated functional residues (6):
| Position | Phenotype |
|---|---|
| 128 | reduced interaction with ern1. abolishes interaction with ern1; when associated with w-403. |
| 331 | phosphomimetic mutant. does not affect enzyme or chaperone activity. |
| 357 | abolishes phosphorylation at this site but protein is still phosphorylated at other sites. no changes in chaperone or en |
| 357 | phosphomimetic mutant. reduced resistance to protease digestion, sugesting adoption of an open conformation. increased c |
| 403 | reduced interaction with ern1. abolishes interaction with ern1; when associated with i-128. |
| 427 | phosphomimetic mutant. does not affect enzyme or chaperone activity. does not increase binding to ern1. |
Function
Pathways and Gene Ontology
Reactome pathways
12 pathways
| ID | Pathway |
|---|---|
| R-HSA-1650814 | Collagen biosynthesis and modifying enzymes |
| R-HSA-264876 | Insulin processing |
| R-HSA-3299685 | Detoxification of Reactive Oxygen Species |
| R-HSA-381426 | Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) |
| R-HSA-5358346 | Hedgehog ligand biogenesis |
| R-HSA-8866423 | VLDL assembly |
| R-HSA-8957275 | Post-translational protein phosphorylation |
| R-HSA-8963888 | Chylomicron assembly |
| R-HSA-8964041 | LDL remodeling |
| R-HSA-9020591 | Interleukin-12 signaling |
| R-HSA-9020933 | Interleukin-23 signaling |
| R-HSA-9918432 | Maturation of DENV proteins |
MSigDB gene sets: 427 (showing top):
MODULE_93, SHIPP_DLBCL_VS_FOLLICULAR_LYMPHOMA_UP, GRUETZMANN_PANCREATIC_CANCER_DN, REACTOME_CYTOKINE_SIGNALING_IN_IMMUNE_SYSTEM, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOBP_RESPONSE_TO_PEPTIDE, MODULE_151, ENK_UV_RESPONSE_KERATINOCYTE_UP, GOBP_ALPHA_AMINO_ACID_METABOLIC_PROCESS, GOBP_RESPONSE_TO_ENDOPLASMIC_RETICULUM_STRESS, GOBP_POSITIVE_REGULATION_OF_LYMPHOCYTE_MIGRATION, GOBP_REGULATION_OF_HORMONE_LEVELS, GOCC_CELL_SURFACE, MODULE_478, GOBP_POSITIVE_REGULATION_OF_SUBSTRATE_ADHESION_DEPENDENT_CELL_SPREADING
GO Biological Process (15): protein folding (GO:0006457), endoplasmic reticulum to Golgi vesicle-mediated transport (GO:0006888), peptidyl-proline hydroxylation to 4-hydroxy-L-proline (GO:0018401), insulin processing (GO:0030070), protein folding in endoplasmic reticulum (GO:0034975), response to endoplasmic reticulum stress (GO:0034976), interleukin-12-mediated signaling pathway (GO:0035722), interleukin-23-mediated signaling pathway (GO:0038155), positive regulation of cell adhesion (GO:0045785), positive regulation of viral entry into host cell (GO:0046598), cellular response to hypoxia (GO:0071456), cellular response to interleukin-7 (GO:0098761), positive regulation of substrate adhesion-dependent cell spreading (GO:1900026), regulation of oxidative stress-induced intrinsic apoptotic signaling pathway (GO:1902175), positive regulation of T cell migration (GO:2000406)
GO Molecular Function (13): RNA binding (GO:0003723), protein disulfide isomerase activity (GO:0003756), actin binding (GO:0003779), procollagen-proline 4-dioxygenase activity (GO:0004656), integrin binding (GO:0005178), protein-disulfide reductase activity (GO:0015035), thiol oxidase activity (GO:0016972), enzyme binding (GO:0019899), protein heterodimerization activity (GO:0046982), protein binding (GO:0005515), isomerase activity (GO:0016853), protein-containing complex binding (GO:0044877), dioxygenase activity (GO:0051213)
GO Cellular Component (16): extracellular region (GO:0005576), endoplasmic reticulum (GO:0005783), endoplasmic reticulum lumen (GO:0005788), endoplasmic reticulum-Golgi intermediate compartment (GO:0005793), cytosol (GO:0005829), cytoskeleton (GO:0005856), focal adhesion (GO:0005925), external side of plasma membrane (GO:0009897), procollagen-proline 4-dioxygenase complex (GO:0016222), lamellipodium (GO:0030027), protein-containing complex (GO:0032991), endoplasmic reticulum chaperone complex (GO:0034663), melanosome (GO:0042470), extracellular exosome (GO:0070062), plasma membrane (GO:0005886), membrane (GO:0016020)
Reactome top-level categories
Rollup of top-10 pathways:
| Category | Pathways |
|---|---|
| Plasma lipoprotein assembly | 2 |
| Interleukin-12 family signaling | 2 |
| Collagen formation | 1 |
| Peptide hormone metabolism | 1 |
| Cellular response to chemical stress | 1 |
| Metabolism of proteins | 1 |
| Signaling by Hedgehog | 1 |
| Post-translational protein modification | 1 |
| Plasma lipoprotein remodeling | 1 |
| Dengue Virus Genome Translation and Replication | 1 |
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| cytoplasm | 4 |
| cellular anatomical structure | 3 |
| cellular response to stress | 2 |
| cytokine-mediated signaling pathway | 2 |
| catalytic activity, acting on a protein | 2 |
| disulfide oxidoreductase activity | 2 |
| binding | 2 |
| intracellular membrane-bounded organelle | 2 |
| endoplasmic reticulum protein-containing complex | 2 |
| cellular process | 1 |
| protein maturation | 1 |
| intercellular transport | 1 |
| intracellular transport | 1 |
| Golgi vesicle transport | 1 |
| modified amino acid metabolic process | 1 |
| peptidyl-proline hydroxylation | 1 |
| L-amino acid metabolic process | 1 |
| non-proteinogenic amino acid metabolic process | 1 |
| peptide hormone processing | 1 |
| insulin metabolic process | 1 |
| protein folding | 1 |
| cellular response to interleukin-12 | 1 |
| cell adhesion | 1 |
| regulation of cell adhesion | 1 |
| positive regulation of cellular process | 1 |
| regulation of viral entry into host cell | 1 |
| symbiont entry into host cell | 1 |
| positive regulation by symbiont of entry into host | 1 |
| positive regulation of viral life cycle | 1 |
| response to hypoxia | 1 |
| cellular response to decreased oxygen levels | 1 |
| cellular response to cytokine stimulus | 1 |
| response to interleukin-7 | 1 |
| positive regulation of cell-substrate adhesion | 1 |
| substrate adhesion-dependent cell spreading | 1 |
| regulation of substrate adhesion-dependent cell spreading | 1 |
| intrinsic apoptotic signaling pathway in response to oxidative stress | 1 |
| regulation of intrinsic apoptotic signaling pathway | 1 |
| T cell migration | 1 |
| positive regulation of lymphocyte migration | 1 |
Protein interactions and networks
STRING
4045 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| P4HB | P4HA1 | P13674 | 979 |
| P4HB | P4HA2 | O15460 | 974 |
| P4HB | HSPA5 | P11021 | 952 |
| P4HB | CANX | P27824 | 945 |
| P4HB | P4HA3 | Q7Z4N8 | 941 |
| P4HB | EGF | P01133 | 938 |
| P4HB | CALR | P27797 | 878 |
| P4HB | OS9 | Q13438 | 840 |
| P4HB | SEL1L | Q9UBV2 | 836 |
| P4HB | HSP90B1 | P14625 | 834 |
| P4HB | HSPA4 | P34932 | 834 |
| P4HB | SYVN1 | Q86TM6 | 822 |
| P4HB | VCP | P55072 | 820 |
| P4HB | PPIB | P23284 | 819 |
| P4HB | DERL2 | Q9GZP9 | 805 |
IntAct
457 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| RBM8A | CASC3 | psi-mi:“MI:0914”(association) | 0.900 |
| TAP1 | TAPBP | psi-mi:“MI:0914”(association) | 0.800 |
| P4HA2 | P4HB | psi-mi:“MI:0915”(physical association) | 0.740 |
| NDUFS3 | NDUFS8 | psi-mi:“MI:0914”(association) | 0.730 |
| PRELID3B | TRIAP1 | psi-mi:“MI:0914”(association) | 0.710 |
| P4HB | GRN | psi-mi:“MI:0915”(physical association) | 0.670 |
| P4HA3 | FAM171A2 | psi-mi:“MI:0914”(association) | 0.640 |
| LRFN4 | P4HB | psi-mi:“MI:0915”(physical association) | 0.560 |
| CHCHD2 | P4HB | psi-mi:“MI:0915”(physical association) | 0.560 |
| FZD10 | P4HB | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | LCE2D | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | KRTAP4-11 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | LCN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | NTM | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | LRFN4 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | ODF1 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | CHCHD2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | CNNM3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | ZNF69 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | NECTIN2 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | KRTAP5-9 | psi-mi:“MI:0915”(physical association) | 0.560 |
| P4HB | PLCXD3 | psi-mi:“MI:0915”(physical association) | 0.560 |
| CEP104 | CCDC66 | psi-mi:“MI:2364”(proximity) | 0.540 |
| SYMPK | CPSF4 | psi-mi:“MI:0914”(association) | 0.530 |
| EBNA-LP | HAX1 | psi-mi:“MI:0914”(association) | 0.530 |
| P4HB | ZBTB2 | psi-mi:“MI:0914”(association) | 0.530 |
| NEK7 | P4HA2 | psi-mi:“MI:0914”(association) | 0.510 |
BioGRID (609): P4HB (Two-hybrid), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Affinity Capture-MS), P4HB (Reconstituted Complex), P4HB (Affinity Capture-MS), SUCO (Affinity Capture-MS), ZNF292 (Affinity Capture-MS), P4HA2 (Affinity Capture-MS), ZBTB2 (Affinity Capture-MS), P4HB (Affinity Capture-MS)
ESM2 similar proteins: A2VE29, A6QLU8, D3Z6P0, H2N4I1, O00391, O08841, P04785, P05307, P07237, P08003, P09102, P09103, P13667, P21195, P30040, P38657, P38659, P57759, P81628, P97278, P97346, Q0VCM5, Q13087, Q14554, Q29052, Q2HWU2, Q2KIL5, Q499T2, Q4VIT4, Q503L9, Q5E936, Q5I0H9, Q5R5B6, Q5RCH2, Q5WA72, Q61702, Q67IX6, Q6DKJ4, Q6GM16, Q6IUU3
Diamond homologs: D3Z6P0, D4B2L8, O13704, O13811, O22263, O48773, O51890, P00275, P04785, P05307, P07237, P08003, P09102, P09103, P0A617, P0AGG4, P0AGG5, P0AGG6, P0AGG7, P10473, P11598, P13667, P21195, P23400, P27773, P29828, P30101, P34329, P38657, P38659, P38660, P38661, P46843, P52230, P52233, P52588, P52589, P54399, P55059, P73263
SIGNOR signaling
3 interactions.
| A | Effect | B | Mechanism |
|---|---|---|---|
| P4HB | “up-regulates quantity by stabilization” | Collagen | binding |
| P4HB | “down-regulates activity” | ERN1 | binding |
| FAM20C | “up-regulates activity” | P4HB | phosphorylation |
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 160 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| mRNA 3’-end processing | 7 | 12.5× | 7e-04 |
| Mitochondrial protein degradation | 8 | 8.3× | 1e-03 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
423 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 1 |
| Likely pathogenic | 2 |
| Uncertain significance | 177 |
| Likely benign | 156 |
| Benign | 53 |
Top pathogenic / likely-pathogenic (3)
| Variant ID | HGVS | Classification |
|---|---|---|
| 189337 | NM_000918.4(P4HB):c.1178A>G (p.Tyr393Cys) | Pathogenic |
| 1175197 | NM_000918.4(P4HB):c.236dup (p.Leu79fs) | Likely pathogenic |
| 2169599 | NM_000918.4(P4HB):c.1198T>C (p.Cys400Arg) | Likely pathogenic |
SpliceAI
1662 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 17:81844089:GATC:G | acceptor_gain | 1.0000 |
| 17:81844090:ATCC:A | acceptor_loss | 1.0000 |
| 17:81844091:TC:T | acceptor_gain | 1.0000 |
| 17:81844091:TCCT:T | acceptor_loss | 1.0000 |
| 17:81844092:CC:C | acceptor_gain | 1.0000 |
| 17:81844092:CCTG:C | acceptor_loss | 1.0000 |
| 17:81844093:C:CC | acceptor_gain | 1.0000 |
| 17:81844094:T:C | acceptor_loss | 1.0000 |
| 17:81844098:A:AC | acceptor_gain | 1.0000 |
| 17:81844098:A:C | acceptor_gain | 1.0000 |
| 17:81844101:C:CT | acceptor_gain | 1.0000 |
| 17:81844102:A:T | acceptor_gain | 1.0000 |
| 17:81845142:A:AC | donor_gain | 1.0000 |
| 17:81845143:C:CC | donor_gain | 1.0000 |
| 17:81845143:CGT:C | donor_gain | 1.0000 |
| 17:81845163:T:TA | donor_gain | 1.0000 |
| 17:81845227:TGACC:T | acceptor_loss | 1.0000 |
| 17:81845228:GACCT:G | acceptor_loss | 1.0000 |
| 17:81845229:ACC:A | acceptor_loss | 1.0000 |
| 17:81845230:CCTGT:C | acceptor_loss | 1.0000 |
| 17:81845231:C:CA | acceptor_loss | 1.0000 |
| 17:81845232:T:G | acceptor_loss | 1.0000 |
| 17:81845559:ACCGT:A | donor_gain | 1.0000 |
| 17:81845560:CCGTC:C | donor_gain | 1.0000 |
| 17:81845563:T:A | donor_gain | 1.0000 |
| 17:81845610:A:AC | donor_gain | 1.0000 |
| 17:81845611:C:CC | donor_gain | 1.0000 |
| 17:81845613:TTG:T | donor_gain | 1.0000 |
| 17:81845739:GCAT:G | acceptor_gain | 1.0000 |
| 17:81845740:CAT:C | acceptor_gain | 1.0000 |
AlphaMissense
3394 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 17:81845209:G:T | R461S | 1.000 |
| 17:81845598:G:T | P441H | 1.000 |
| 17:81845599:G:A | P441S | 1.000 |
| 17:81845600:G:C | F440L | 1.000 |
| 17:81845600:G:T | F440L | 1.000 |
| 17:81845601:A:C | F440C | 1.000 |
| 17:81845602:A:G | F440L | 1.000 |
| 17:81845630:G:C | N430K | 1.000 |
| 17:81845630:G:T | N430K | 1.000 |
| 17:81845701:A:G | W407R | 1.000 |
| 17:81845701:A:T | W407R | 1.000 |
| 17:81845720:G:C | C400W | 1.000 |
| 17:81845721:C:A | C400F | 1.000 |
| 17:81845721:C:T | C400Y | 1.000 |
| 17:81845722:A:G | C400R | 1.000 |
| 17:81845723:G:C | H399Q | 1.000 |
| 17:81845723:G:T | H399Q | 1.000 |
| 17:81845725:G:C | H399D | 1.000 |
| 17:81845729:A:C | C397W | 1.000 |
| 17:81845730:C:A | C397F | 1.000 |
| 17:81845730:C:G | C397S | 1.000 |
| 17:81845730:C:T | C397Y | 1.000 |
| 17:81845731:A:G | C397R | 1.000 |
| 17:81845731:A:T | C397S | 1.000 |
| 17:81845732:C:A | W396C | 1.000 |
| 17:81845732:C:G | W396C | 1.000 |
| 17:81845734:A:G | W396R | 1.000 |
| 17:81845734:A:T | W396R | 1.000 |
| 17:81845739:G:T | A394D | 1.000 |
| 17:81846573:G:C | F304L | 1.000 |
dbSNP variants (sampled 300 via entrez): RS1000183609 (17:81854814 C>T), RS1000192969 (17:81857921 A>C), RS1000234519 (17:81855136 A>G), RS1000258567 (17:81860597 CCGCGCGCGCTGGCCGCGGCG>C,CCG,CCGCGCGCGCTGGCCGCGGCGCGCGCGCGCTGGCCGCGGCG,CCGCGCGCGCTGGCCGCGGCGCGCGCGCTGGCCGCGGCG), RS1000410127 (17:81859780 G>A,C), RS1000518078 (17:81853506 G>A,C), RS1000637508 (17:81843926 G>A), RS1000799552 (17:81858905 C>T), RS1000821729 (17:81849598 T>C,G), RS1000865622 (17:81859912 G>A,C), RS1001123372 (17:81859518 T>A,G), RS1001145475 (17:81858755 A>G), RS1001377524 (17:81845471 C>A,G,T), RS1001555130 (17:81846765 A>C), RS1001668523 (17:81852122 G>A,C)
Disease associations
OMIM: gene MIM:176790 | disease phenotypes: MIM:112240, MIM:166200
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| Cole-Carpenter syndrome 1 | Strong | Autosomal dominant |
| Cole-Carpenter syndrome | Supportive | Autosomal dominant |
| osteogenesis imperfecta type 1 | Supportive | Autosomal dominant |
Mondo (4): Cole-Carpenter syndrome 1 (MONDO:0007204), osteogenesis imperfecta (MONDO:0019019), Cole-Carpenter syndrome (MONDO:0016085), osteogenesis imperfecta type 1 (MONDO:0008146)
Orphanet (2): Cole-Carpenter syndrome (Orphanet:2050), Osteogenesis imperfecta (Orphanet:666)
HPO phenotypes
39 total (30 of 39 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000238 | Hydrocephalus |
| HP:0000262 | Turricephaly |
| HP:0000347 | Micrognathia |
| HP:0000494 | Downslanted palpebral fissures |
| HP:0000520 | Proptosis |
| HP:0000586 | Shallow orbits |
| HP:0000592 | Blue sclerae |
| HP:0000682 | Abnormal dental enamel morphology |
| HP:0000684 | Delayed eruption of teeth |
| HP:0000691 | Microdontia |
| HP:0000703 | Dentinogenesis imperfecta |
| HP:0000772 | Abnormal rib morphology |
| HP:0000938 | Osteopenia |
| HP:0000944 | Abnormal metaphysis morphology |
| HP:0001252 | Hypotonia |
| HP:0001263 | Global developmental delay |
| HP:0001334 | Communicating hydrocephalus |
| HP:0001382 | Joint hypermobility |
| HP:0001511 | Intrauterine growth retardation |
| HP:0001608 | Abnormality of the voice |
| HP:0001620 | Abnormally high-pitched voice |
| HP:0002007 | Frontal bossing |
| HP:0002645 | Wormian bones |
| HP:0002650 | Scoliosis |
| HP:0002652 | Skeletal dysplasia |
| HP:0002757 | Recurrent fractures |
| HP:0002808 | Kyphosis |
| HP:0002953 | Vertebral compression fracture |
| HP:0003312 | Abnormal form of the vertebral bodies |
GWAS associations
0 associations (top):
MeSH disease descriptors (2)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D010013 | Osteogenesis Imperfecta | C05.116.099.708.685; C16.320.737; C17.300.200.540 |
| C535963 | Cole Carpenter syndrome (supp.) |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (2): CHEMBL2364681 (PROTEIN COMPLEX), CHEMBL5422 (SINGLE PROTEIN)
Molecules with ChEMBL bioactivity
1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 1,626 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).
| Molecule | Name | Phase | Patents |
|---|---|---|---|
| CHEMBL250450 | ISOQUERCETIN | 2 | 1,626 |
PharmGKB: 1 entry (VIP=true, CPIC=false)
Binding affinities (BindingDB)
16 measured of 53 human assays (53 total across all organisms); most potent 16 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value | Patent |
|---|---|---|---|
| Juniferdin derivative, 1 | IC50 | 156 nM | |
| Juniferdin derivative, 13 | IC50 | 167 nM | |
| ethyl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylate | IC50 | 250 nM | US-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase |
| Juniferdin derivative, 3 | IC50 | 453 nM | |
| Juniferdin derivative, 10 | IC50 | 565 nM | |
| Juniferdin derivative, 4 | IC50 | 627 nM | |
| tert-butyl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylate | IC50 | 650 nM | US-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase |
| Juniferdin derivative, 5 | IC50 | 693 nM | |
| propan-2-yl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylate | IC50 | 850 nM | US-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase |
| Juniferdin derivative, 7 | IC50 | 958 nM | |
| Juniferdin derivative, 17 | IC50 | 1850 nM | |
| ethyl 1-(3-chloro-4-hydroxybenzoyl)-4-(2-phenoxyethyl)piperidine-4-carboxylate | IC50 | 2250 nM | US-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase |
| Juniferdin derivative, 14 | IC50 | 2530 nM | |
| 1-[(3-chloro-4-hydroxyphenyl)methyl]-N-ethyl-N-methyl-4-(2-phenoxyethyl)piperidine-4-carboxamide | IC50 | 3000 nM | US-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase |
| 1-[(3-chloro-4-hydroxyphenyl)methyl]-N-cyclopentyl-4-(2-phenoxyethyl)piperidine-4-carboxamide | IC50 | 4000 nM | US-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase |
| 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)-N-phenylpiperidine-4-carboxamide | IC50 | 22500 nM | US-10064853: Compounds for use in methods for treating diseases or conditions mediated by protein disulfide isomerase |
ChEMBL bioactivities
250 potent at pChembl≥5 of 329 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 7.81 | AC50 | 15.5 | nM | CHEMBL1572115 |
| 7.64 | IC50 | 23 | nM | CHEMBL4748449 |
| 7.25 | AC50 | 56.8 | nM | CHEMBL2145932 |
| 7.24 | AC50 | 57.3 | nM | CHEMBL2145930 |
| 7.21 | Kd | 62 | nM | CHEMBL4637290 |
| 7.14 | IC50 | 72 | nM | CHEMBL4786482 |
| 7.04 | IC50 | 92 | nM | CHEMBL1369923 |
| 6.96 | IC50 | 110 | nM | CHEMBL3741464 |
| 6.92 | IC50 | 120 | nM | CHEMBL4483086 |
| 6.90 | AC50 | 125 | nM | CHEMBL1987920 |
| 6.89 | IC50 | 130 | nM | CHEMBL4472710 |
| 6.89 | IC50 | 130 | nM | CHEMBL1319324 |
| 6.85 | IC50 | 140 | nM | CHEMBL4740031 |
| 6.82 | IC50 | 150 | nM | CHEMBL3703646 |
| 6.82 | IC50 | 150 | nM | CHEMBL1688556 |
| 6.80 | IC50 | 160 | nM | CHEMBL4459949 |
| 6.77 | IC50 | 170 | nM | CHEMBL4780610 |
| 6.77 | IC50 | 170 | nM | CHEMBL590899 |
| 6.77 | IC50 | 170 | nM | CHEMBL591855 |
| 6.75 | IC50 | 180 | nM | CHEMBL1557864 |
| 6.75 | IC50 | 180 | nM | CHEMBL4790355 |
| 6.72 | IC50 | 190 | nM | CHEMBL1536119 |
| 6.72 | IC50 | 190 | nM | CHEMBL600752 |
| 6.71 | AC50 | 195 | nM | CHEMBL2145895 |
| 6.68 | IC50 | 210 | nM | CHEMBL4446669 |
| 6.68 | IC50 | 210 | nM | CHEMBL4550951 |
| 6.64 | IC50 | 230 | nM | CHEMBL4472807 |
| 6.64 | IC50 | 230 | nM | CHEMBL1554780 |
| 6.64 | IC50 | 230 | nM | CHEMBL2323557 |
| 6.60 | IC50 | 250 | nM | CHEMBL1536119 |
| 6.57 | IC50 | 270 | nM | CHEMBL4799930 |
| 6.54 | IC50 | 290 | nM | CHEMBL4782811 |
| 6.54 | IC50 | 290 | nM | CHEMBL4763853 |
| 6.52 | IC50 | 300 | nM | CHEMBL1565145 |
| 6.52 | IC50 | 300 | nM | CHEMBL1979298 |
| 6.52 | IC50 | 300 | nM | CHEMBL4753733 |
| 6.50 | AC50 | 318 | nM | CHEMBL2145894 |
| 6.48 | IC50 | 330 | nM | CHEMBL1485589 |
| 6.47 | IC50 | 340 | nM | CHEMBL1360077 |
| 6.47 | IC50 | 340 | nM | CHEMBL4764068 |
| 6.46 | IC50 | 350 | nM | CHEMBL4464788 |
| 6.46 | IC50 | 350 | nM | CHEMBL1433812 |
| 6.46 | IC50 | 350 | nM | CHEMBL4755661 |
| 6.46 | IC50 | 350 | nM | CHEMBL4776190 |
| 6.44 | IC50 | 360 | nM | CHEMBL4745645 |
| 6.43 | IC50 | 370 | nM | CHEMBL1434798 |
| 6.42 | AC50 | 376 | nM | CHEMBL1402451 |
| 6.41 | IC50 | 390 | nM | CHEMBL4756890 |
| 6.41 | IC50 | 390 | nM | CHEMBL4747596 |
| 6.40 | IC50 | 400 | nM | CHEMBL4520508 |
PubChem BioAssay actives
214 with measured affinity, of 405 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 6-[1,3-benzodioxol-5-yl(pyrrolidin-1-yl)methyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.0230 | uM |
| 2-[[4-(cyclopropanecarbonyl)piperazin-1-yl]methyl]-1,2-benzothiazol-3-one | 1650854: Reversible binding affinity to full length human N-terminal His6-tagged PDIA1 alpha domain (18 to 134 residues) expressed in Escherichia coli BL21 Gold (DE3) by isothermal titration calorimetry | kd | 0.0620 | uM |
| 6-[1,3-benzodioxol-5-yl-(pyridin-2-ylamino)methyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.0720 | uM |
| 6-[(4-chlorophenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.0920 | uM |
| 7-[anilino(phenyl)methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1100 | uM |
| methyl 3-[(E)-3-(3-hydroxyphenyl)-3-oxoprop-1-enyl]benzoate | 1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregation | ic50 | 0.1200 | uM |
| methyl 3-[(E)-3-[3-bromo-4-(hydroxymethyl)phenyl]-3-oxoprop-1-enyl]benzoate | 1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregation | ic50 | 0.1300 | uM |
| 6-[(4-methoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1300 | uM |
| 7-[(4-fluorophenyl)-[(4-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1400 | uM |
| 7-[(4-nitroanilino)-phenylmethyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1500 | uM |
| 7-[(3-hydroxy-4-methoxyphenyl)-[(4-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1500 | uM |
| [(2E,4R,9E)-4-hydroxy-2,5,5,9-tetramethylcycloundeca-2,9-dien-1-yl] 4-hydroxybenzoate | 1799701: Reductase Activity Assay from Article 10.1021/cb100387r: “Discovery of a small molecule PDI inhibitor that inhibits reduction of HIV-1 envelope glycoprotein gp120.” | ic50 | 0.1560 | uM |
| 4-[(E)-3-(3-cyanophenyl)prop-2-enoyl]-N,N-dipentylbenzenesulfonamide | 1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregation | ic50 | 0.1600 | uM |
| [(1R,4E,6R,11R)-6-hydroxy-4,7,7,11-tetramethyl-12-oxabicyclo[9.1.0]dodec-4-en-3-yl] 4-hydroxybenzoate | 1799701: Reductase Activity Assay from Article 10.1021/cb100387r: “Discovery of a small molecule PDI inhibitor that inhibits reduction of HIV-1 envelope glycoprotein gp120.” | ic50 | 0.1670 | uM |
| 7-[(4-chlorophenyl)-(pyridin-2-ylamino)methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1700 | uM |
| 7-[(4-ethylphenyl)-(pyridin-2-ylamino)methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1700 | uM |
| 6-[(4-hydroxy-3,5-dimethoxyphenyl)-(pyridin-2-ylamino)methyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1700 | uM |
| 7-[(4-hydroxy-3,5-dimethoxyphenyl)-[(5-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1800 | uM |
| 6-[pyrrolidin-1-yl-(3,4,5-trimethoxyphenyl)methyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1800 | uM |
| 7-[(pyridin-2-ylamino)-(2,4,6-trimethylphenyl)methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.1900 | uM |
| 6-[(2,2-difluoro-1,3-benzodioxol-5-yl)-piperidin-1-ylmethyl]-1-benzofuran-7-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2000 | uM |
| 6-[piperidin-1-yl(pyridin-4-yl)methyl]-1-benzofuran-7-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2000 | uM |
| 7-[[(4-methyl-2-pyridinyl)amino]-phenylmethyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2000 | uM |
| ethyl 2-[[(8-hydroxyquinolin-7-yl)-phenylmethyl]amino]benzoate | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2000 | uM |
| 6-[1,3-benzodioxol-5-yl(morpholin-4-yl)methyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2000 | uM |
| 6-[(4-fluorophenyl)-pyrrolidin-1-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2000 | uM |
| 6-[[4-(dimethylamino)phenyl]-pyrrolidin-1-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2000 | uM |
| (E)-1-(3-hydroxyphenyl)-3-(4-pyridin-4-ylphenyl)prop-2-en-1-one | 1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregation | ic50 | 0.2100 | uM |
| 4-[(E)-3-(3-fluoro-4-hydroxyphenyl)-3-oxoprop-1-enyl]benzonitrile | 1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregation | ic50 | 0.2100 | uM |
| (E)-3-[4-(benzimidazol-1-yl)phenyl]-1-(3-hydroxyphenyl)prop-2-en-1-one | 1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregation | ic50 | 0.2300 | uM |
| 6-[(4-hydroxy-3-methoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2300 | uM |
| 6-[(4-fluorophenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2300 | uM |
| ethyl 1-[(3-chloro-4-hydroxyphenyl)methyl]-4-(2-phenoxyethyl)piperidine-4-carboxylate | 2034967: Non-covalent inhibition of PDI (unknown origin) by insulin aggregation assay | ic50 | 0.2500 | uM |
| 6-[(4-fluorophenyl)-piperidin-1-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2700 | uM |
| 4-[piperidin-1-yl-(4-pyrrol-1-ylphenyl)methyl]-1H-indazol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2900 | uM |
| 6-[(4-fluorophenyl)-piperidin-1-ylmethyl]-2,3-dihydro-1,4-benzodioxin-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.2900 | uM |
| 6-[piperidin-1-yl-[4-(trifluoromethyl)phenyl]methyl]-1-benzofuran-7-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3000 | uM |
| 4-[[(8-hydroxyquinolin-7-yl)-phenylmethyl]amino]benzoic acid | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3000 | uM |
| 6-[(3,4-dimethoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3000 | uM |
| 6-[(2-methoxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3300 | uM |
| 4-[piperidin-1-yl-[4-(1,3-thiazol-2-yl)phenyl]methyl]-1H-indazol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3400 | uM |
| 6-[(2-hydroxyphenyl)-morpholin-4-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3400 | uM |
| (E)-1-(3-hydroxyphenyl)-3-(4-pyridin-3-ylphenyl)prop-2-en-1-one | 1592021: Inhibition of recombinant human N-terminal His-tagged PDI expressed in Escherichia coli BL21 (DE3) pLysS assessed as reduction in enzyme-mediated bovine insulin aggregation | ic50 | 0.3500 | uM |
| 4-[(4-fluorophenyl)-piperidin-1-ylmethyl]-1H-indazol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3500 | uM |
| 7-[(3-fluorophenyl)-[(4-methyl-2-pyridinyl)amino]methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3500 | uM |
| 6-[1,3-benzodioxol-5-yl(piperidin-1-yl)methyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3500 | uM |
| 6-[(2,4-dimethoxyphenyl)-pyrrolidin-1-ylmethyl]-1,3-benzodioxol-5-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3600 | uM |
| 7-[(2-chloro-3-hydroxyphenyl)-(pyridin-2-ylamino)methyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3700 | uM |
| 7-[(2,3-dimethoxyphenyl)-morpholin-4-ylmethyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3900 | uM |
| 7-[(2-methoxyanilino)-phenylmethyl]quinolin-8-ol | 1724139: Inhibition of recombinant human wild-type N-terminal His-tagged PDIA1 expressed in Escherichia coli strain BL21(DE3) using bovine insulin as substrate preincubated for 1 hr followed by substrate addition | ic50 | 0.3900 | uM |
CTD chemical–gene interactions
81 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Tunicamycin | increases expression | 5 |
| Cadmium Chloride | decreases expression, increases abundance, affects expression, affects cotreatment, increases expression | 4 |
| bisphenol A | affects expression, decreases expression, increases expression | 3 |
| Tobacco Smoke Pollution | increases metabolic processing, affects expression, increases expression | 3 |
| Thapsigargin | increases expression | 3 |
| chloropicrin | decreases expression | 2 |
| bisphenol S | decreases methylation, increases expression | 2 |
| Cadmium | affects cotreatment, increases expression, decreases expression, increases abundance | 2 |
| Copper | affects binding | 2 |
| Zinc | affects binding, increases expression | 2 |
| Cyclosporine | increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| ME-344 | increases expression | 1 |
| bisphenol F | increases expression | 1 |
| beta-N-methylamino-L-alanine | increases expression | 1 |
| bufotalin | affects expression | 1 |
| myristicin | decreases expression | 1 |
| pyrogallol 1,3-dimethyl ether | affects cotreatment, affects localization, increases expression, decreases expression | 1 |
| beta-lapachone | decreases expression | 1 |
| sulforaphane | affects binding | 1 |
| sodium arsenite | decreases expression | 1 |
| tetrabromobisphenol A | decreases expression | 1 |
| N-phenylmaleimide | decreases reaction, increases reduction, decreases activity | 1 |
| 2,3-bis(3’-hydroxybenzyl)butyrolactone | affects cotreatment, increases expression | 1 |
| cupric oxide | decreases expression | 1 |
| epigallocatechin gallate | increases expression | 1 |
| phenylarsonous acid | decreases reaction, increases reduction, decreases activity | 1 |
| di-n-butylphosphoric acid | affects expression | 1 |
| cylindrospermopsin | decreases expression | 1 |
| nickel acetate | affects expression | 1 |
ChEMBL screening assays
69 unique, capped per target: 64 binding, 5 functional
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL1964080 | Functional | PUBCHEM_BIOASSAY: Turbidimetric Biochemical Primary HTS to identify inhibitors of Protein Disulfide Isomerase Measured in Biochemical System Using Plate Reader - 2137-01_Inhibitor_Dose_CherryPick_Activity. (Class of assay: confirmatory) | PubChem BioAssay data set |
| CHEMBL3215127 | Binding | PubChem BioAssay. Turbidometric Biochemical Primary HTS to identify inhibitors of Protein Disulfide Isomerase Measured in Biochemical System Using Plate Reader - 2137-01_Inhibitor_Dose_DryPowder_Activity_Set2. (Class of assay: confirmator | PubChem BioAssay data set |
Cellosaurus cell lines
4 cell lines: 4 cancer cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_B1CJ | Abcam A-431 P4HB KO | Cancer cell line | Female |
| CVCL_E2FR | HAP1 P4HB (-) 1 | Cancer cell line | Male |
| CVCL_E2FS | HAP1 P4HB (-) 2 | Cancer cell line | Male |
| CVCL_F1M9 | HyCyte A-549 KO-hP4HB | Cancer cell line | Male |
Clinical trials (associated diseases)
77 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT00131469 | PHASE4 | COMPLETED | Study of Teriparatide (FORTEO) to Treat Adults With Osteogenesis Imperfecta |
| NCT00159419 | PHASE4 | COMPLETED | Bisphosphonate Therapy for Osteogenesis Imperfecta |
| NCT01713231 | PHASE4 | COMPLETED | Effect of High-Dose Vitamin D on Bone Density in Osteogenesis Imperfecta |
| NCT02303873 | PHASE4 | COMPLETED | Efficacy and Safety of Alendronate in Chinese Children or Adolescents With Osteogenesis Imperfecta |
| NCT03735537 | PHASE4 | COMPLETED | Treatment of Osteogenesis Imperfecta With Parathyroid Hormone and Zoledronic Acid |
| NCT04152551 | PHASE4 | RECRUITING | Effects of Bisphosphonates on OI-Related Hearing Loss |
| NCT00001305 | PHASE3 | COMPLETED | Growth Hormone Therapy in Osteogenesis Imperfecta |
| NCT00005901 | PHASE3 | COMPLETED | Pamidronate to Treat Osteogenesis Imperfecta in Children |
| NCT00106028 | PHASE3 | COMPLETED | Safety and Efficacy of Risedronate in the Treatment of Osteogenesis Imperfecta in Children |
| NCT00982124 | PHASE3 | COMPLETED | An Efficacy and Safety Trial of Intravenous Zoledronic Acid in Infants Less Than One Year of Age, With Severe Osteogenesis Imperfecta |
| NCT02352753 | PHASE3 | TERMINATED | Multicenter,Single-arm Study to Evaluate Efficacy, Safety, & Pharmacokinetics of Denosumab in Children w/ OI |
| NCT03638128 | PHASE3 | TERMINATED | Open-label Extension of Study 20130173 of Denosumab in Children and Young Adults With Osteogenesis Imperfecta |
| NCT05768854 | PHASE3 | ACTIVE_NOT_RECRUITING | Setrusumab vs Bisphosphonates in Pediatric Subjects With Osteogenesis Imperfecta |
| NCT05972551 | PHASE3 | ACTIVE_NOT_RECRUITING | Study to Evaluate Efficacy and Safety of Romosozumab Compared With Bisphosphonates in Children and Adolescents With Osteogenesis Imperfecta |
| NCT06636071 | PHASE3 | ACTIVE_NOT_RECRUITING | Setrusumab in Pediatric Japanese Subjects With Osteogenesis Imperfecta |
| NCT07366086 | PHASE3 | RECRUITING | Pediatric Safety Follow-up Study of Prior Treatment With Romosozumab for Osteogenesis Imperfecta |
| NCT00063479 | PHASE2 | COMPLETED | Bisphosphonate Treatment of Osteogenesis Imperfecta |
| NCT00131118 | PHASE2 | COMPLETED | Zoledronic Acid in Children (1 -17 Years) With Severe Osteogenesis Imperfecta |
| NCT01417091 | PHASE2 | COMPLETED | Safety, Pharmacokinetics and Pharmacodynamics of BPS804 in Osteogenesis Imperfecta |
| NCT01679080 | PHASE2 | TERMINATED | The Effect of Treatment With Teriparatide and Zoledronic Acid in Patients With Osteogenesis Imperfecta |
| NCT01799798 | PHASE2 | COMPLETED | Translational Therapy in Patients With Osteogenesis Imperfecta - A Pilot Trial on Treatment With the Rankl-Antibody Denosumab |
| NCT03208582 | PHASE2 | COMPLETED | Do Bisphosphonates Alter the Skeletal Response to Mechanical Stimulation in Children With Osteogenesis Imperfecta? |
| NCT03216486 | PHASE2 | WITHDRAWN | An Exploratory Study of BPS804 Treatment in Adult Patients With Type I, III or IV Osteogenesis Imperfecta |
| NCT05312697 | PHASE2 | TERMINATED | Long-term Extension Study of Setrusumab in Adults With Type I, III, or IV Osteogenesis Imperfecta |
| NCT07062588 | PHASE2 | RECRUITING | Osteogenesis Imperfecta Trial of AGA2115 for ADUlts With COL1A1 and/or COL1A2 GeNetic Variations (IDUN) |
| NCT07557446 | PHASE2 | NOT_YET_RECRUITING | A Dose REgimen-Finding Study of AGA2115 in Chinese Patients With Osteogenesis ImpeRfecta (EIR) |
| NCT00705120 | PHASE1 | COMPLETED | Treatment of Severe Osteogenesis Imperfecta by Allogeneic Bone Marrow Transplantation |
| NCT02172885 | PHASE1 | COMPLETED | Mesenchymal Stem Cell Based Therapy for the Treatment of Osteogenesis Imperfecta |
| NCT03064074 | PHASE1 | COMPLETED | Safety of Fresolimumab in the Treatment of Osteogenesis Imperfecta |
| NCT04545554 | PHASE1 | COMPLETED | Study to Evaluate Romosozumab in Children and Adolescents With Osteogenesis Imperfecta |
| NCT05231668 | PHASE1 | TERMINATED | Single Ascending Dose Study of SAR439459 in Adults With Osteogenesis Imperfecta (OI) |
| NCT06086613 | PHASE1 | COMPLETED | A First-in-Human Study Evaluating AGA2115 in Adult Healthy Volunteers |
| NCT05125809 | PHASE2/PHASE3 | ACTIVE_NOT_RECRUITING | Setrusumab vs Placebo for Osteogenesis Imperfecta |
| NCT03706482 | PHASE1/PHASE2 | ACTIVE_NOT_RECRUITING | Boost Brittle Bones Before Birth |
| NCT04623606 | PHASE1/PHASE2 | UNKNOWN | Boost to Brittle Bones - Stem Cell Transplantation for Treatment of Brittle Bones |
| NCT05559801 | PHASE1/PHASE2 | NOT_YET_RECRUITING | Mesenchymal Cell Therapy in Osteogenesis Imperfecta (OI) |
| NCT00001594 | Not specified | COMPLETED | Evaluation and Intervention for the Effects of Osteogenesis Imperfecta |
| NCT00076830 | Not specified | COMPLETED | Evaluation and Treatment of Patients With Connective Tissue Disease |
| NCT00187018 | Not specified | COMPLETED | Marrow Mesenchymal Cell Therapy for Osteogenesis Imperfecta: A Pilot Study |
| NCT00655681 | Not specified | COMPLETED | Prevention of Post Operative Bone Loss in Children |
Related Atlas pages
- Associated diseases: Cole-Carpenter syndrome 1, Cole-Carpenter syndrome, osteogenesis imperfecta type 1
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): Cole-Carpenter syndrome, Cole-Carpenter syndrome 1, osteogenesis imperfecta, osteogenesis imperfecta type 1