PABPC4-AS1

Summary

PABPC4-AS1 (PABPC4 antisense RNA 1, HGNC:40424) is a long non-coding RNA gene on chromosome 1p34.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40424
Approved symbol	PABPC4-AS1
Name	PABPC4 antisense RNA 1
Location	1p34.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228060
Ensembl biotype	lncRNA
Entrez	101929516
RNAcentral	URS00007E4259 — lncRNA, 641 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000415255, ENST00000650144, ENST00000721477

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415255 — 4 exons

Exon	Start	End
ENSE00001677575	39570480	39570623
ENSE00001734634	39572455	39572678
ENSE00004041175	39573081	39573860
ENSE00004041178	39565034	39565219

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 79.92.

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow	UBERON:0002371	79.92	gold quality
body of pancreas	UBERON:0001150	78.62	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.88	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.18	silver quality
rectum	UBERON:0001052	75.59	gold quality
endometrium	UBERON:0001295	75.41	gold quality
bone marrow cell	CL:0002092	74.82	gold quality
left testis	UBERON:0004533	74.22	gold quality
testis	UBERON:0000473	73.96	gold quality
pancreas	UBERON:0001264	73.83	gold quality
right testis	UBERON:0004534	73.31	gold quality
right ovary	UBERON:0002118	72.85	gold quality
left ovary	UBERON:0002119	72.47	gold quality
ovary	UBERON:0000992	72.00	gold quality
monocyte	CL:0000576	71.75	gold quality
adrenal tissue	UBERON:0018303	71.34	gold quality
left uterine tube	UBERON:0001303	71.05	gold quality
leukocyte	CL:0000738	70.70	gold quality
skeletal muscle tissue	UBERON:0001134	70.61	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.61	gold quality
duodenum	UBERON:0002114	69.94	gold quality
smooth muscle tissue	UBERON:0001135	69.82	gold quality
body of stomach	UBERON:0001161	69.71	gold quality
tibial artery	UBERON:0007610	69.68	gold quality
popliteal artery	UBERON:0002250	69.65	gold quality
colonic epithelium	UBERON:0000397	69.62	gold quality
mucosa of stomach	UBERON:0001199	69.09	gold quality
lymph node	UBERON:0000029	68.91	gold quality
stomach	UBERON:0000945	68.90	gold quality
right atrium auricular region	UBERON:0006631	68.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.21

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.