PACRG-AS1

Summary

PACRG-AS1 (PACRG antisense RNA 1, HGNC:27772) is a long non-coding RNA gene on chromosome 6q26.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27772
Approved symbol	PACRG-AS1
Name	PACRG antisense RNA 1
Location	6q26
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000281692
Ensembl biotype	lncRNA
Entrez	285796
RNAcentral	URS000075DA03 — lncRNA, 2135 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000626335, ENST00000655608, ENST00000663455, ENST00000667079, ENST00000670113

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000626335 — 4 exons

Exon	Start	End
ENSE00003762429	163310033	163310970
ENSE00003771552	163320401	163320559
ENSE00003772886	163323391	163324069
ENSE00003881167	163324370	163324446

Expression profiles

Bgee: expression breadth broad, 97 present calls, max score 69.98.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2251 / max 30.1626, expressed in 63 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
76585	0.2095	62
76586	0.0156	9

Top tissues by expression

199 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	69.98	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	64.01	gold quality
right uterine tube	UBERON:0001302	62.26	gold quality
spinal cord	UBERON:0002240	61.85	gold quality
cortical plate	UBERON:0005343	61.16	silver quality
prefrontal cortex	UBERON:0000451	59.88	gold quality
corpus callosum	UBERON:0002336	59.39	gold quality
amygdala	UBERON:0001876	58.48	gold quality
putamen	UBERON:0001874	58.30	gold quality
substantia nigra	UBERON:0002038	56.83	gold quality
Brodmann (1909) area 9	UBERON:0013540	56.42	gold quality
caudate nucleus	UBERON:0001873	55.69	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.66	gold quality
Ammon’s horn	UBERON:0001954	54.81	gold quality
midbrain	UBERON:0001891	54.80	gold quality
hypothalamus	UBERON:0001898	53.97	gold quality
sural nerve	UBERON:0015488	53.64	silver quality
frontal cortex	UBERON:0001870	53.46	gold quality
neocortex	UBERON:0001950	52.33	gold quality
nucleus accumbens	UBERON:0001882	52.11	gold quality
right frontal lobe	UBERON:0002810	51.79	gold quality
forebrain	UBERON:0001890	51.59	gold quality
brain	UBERON:0000955	51.26	gold quality
cerebral cortex	UBERON:0000956	51.19	gold quality
tibial nerve	UBERON:0001323	51.15	gold quality
temporal lobe	UBERON:0001871	50.73	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	50.48	gold quality
heart left ventricle	UBERON:0002084	49.82	gold quality
cardiac ventricle	UBERON:0002082	49.43	gold quality
anterior cingulate cortex	UBERON:0009835	49.34	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.