PAM
gene geneOn this page
Also known as PALPHMPAM-1
Summary
PAM (peptidylglycine alpha-amidating monooxygenase, HGNC:8596) is a protein-coding gene on chromosome 5q21.1, encoding Peptidyl-glycine alpha-amidating monooxygenase (P19021). Bifunctional enzyme that catalyzes amidation of the C-terminus of proteins.
This gene encodes a multifunctional protein. The encoded preproprotein is proteolytically processed to generate the mature enzyme. This enzyme includes two domains with distinct catalytic activities, a peptidylglycine alpha-hydroxylating monooxygenase (PHM) domain and a peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) domain. These catalytic domains work sequentially to catalyze the conversion of neuroendocrine peptides to active alpha-amidated products. Alternative splicing results in multiple transcript variants, at least one of which encodes an isoform that is proteolytically processed.
Source: NCBI Gene 5066 — RefSeq curated summary.
At a glance
- Clinical variants (ClinVar): 113 total
- GTEx eGene: eQTL in 28 tissues, sQTL in 33 (q < 0.05)
- Constraint (gnomAD): pLI 0.00 (LoF-tolerant), LOEUF 0.86 (unconstrained)
- MANE Select transcript:
NM_001177306 - Notable: 113 clinical variants but no curated precision-oncology (CIViC) evidence yet
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:8596 |
| Approved symbol | PAM |
| Name | peptidylglycine alpha-amidating monooxygenase |
| Location | 5q21.1 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | PAL, PHM, PAM-1 |
| Ensembl gene | ENSG00000145730 |
| Ensembl biotype | protein_coding |
| OMIM | 170270 |
| Entrez | 5066 |
Gene structure
Transcript identifiers
Ensembl transcripts: 161 — 113 protein_coding, 41 nonsense_mediated_decay, 5 protein_coding_CDS_not_defined, 2 retained_intron
MANE Select: ENST00000438793
Transcript support level (Ensembl TSL; 1 = fully mRNA-supported): TSL 1: 5, TSL 2: 4, TSL 3: 5, TSL 4: 9, TSL 5: 2
ENST00000438793, ENST00000304400, ENST00000345721, ENST00000346918, ENST00000348126, ENST00000379799, ENST00000455264, ENST00000504456, ENST00000504691, ENST00000505372, ENST00000505654, ENST00000506006, ENST00000506127, ENST00000506260, ENST00000508060, ENST00000509523, ENST00000509636, ENST00000509832, ENST00000510006, ENST00000510208, ENST00000511429, ENST00000511477, ENST00000511839, ENST00000512073, ENST00000513648, ENST00000682024, ENST00000682407, ENST00000682882, ENST00000682972, ENST00000684043, ENST00000684379, ENST00000684529, ENST00000890191, ENST00000890192, ENST00000890193, ENST00000890194, ENST00000890195, ENST00000890196, ENST00000890197, ENST00000890198, ENST00000890199, ENST00000890200, ENST00000890201, ENST00000890202, ENST00000890203, ENST00000890204, ENST00000890205, ENST00000890206, ENST00000890207, ENST00000890208, ENST00000890209, ENST00000890210, ENST00000890211, ENST00000890212, ENST00000890213, ENST00000890214, ENST00000890215, ENST00000890216, ENST00000890217, ENST00000890218, ENST00000890219, ENST00000890220, ENST00000890221, ENST00000890222, ENST00000939731, ENST00000939732, ENST00000939734, ENST00000939736, ENST00000939739, ENST00000939740, ENST00000939741, ENST00000939742, ENST00000957482, ENST00000957483, ENST00000957484, ENST00000957485, ENST00000957486, ENST00000957487, ENST00000957488, ENST00000957489, ENST00000957490, ENST00000957491, ENST00000957492, ENST00000957493, ENST00000957494, ENST00000957495, ENST00000957496, ENST00000957497, ENST00000957498, ENST00000957499, ENST00000957500, ENST00000957501, ENST00000957502, ENST00000957503, ENST00000957504, ENST00000957505, ENST00000957506, ENST00000957507, ENST00000957508, ENST00000957509, ENST00000957510, ENST00000957511, ENST00000957512, ENST00000957513, ENST00000957514, ENST00000957515, ENST00000957516, ENST00000957517, ENST00000957518, ENST00000957519, ENST00000990597, ENST00000990598, ENST00000990599, ENST00000990600, ENST00001057926, ENST00001057927, ENST00001057928, ENST00001057929, ENST00001057934, ENST00001057935, ENST00001057936, ENST00001057937, ENST00001057938, ENST00001057939, ENST00001057940, ENST00001057941, ENST00001057943, ENST00001057944, ENST00001057945, ENST00001057947, ENST00001057948, ENST00001057951, ENST00001057952, ENST00001057954, ENST00001057955, ENST00001057958, ENST00001057959, ENST00001057960, ENST00001057965, ENST00001057966, ENST00001057967, ENST00001057968, ENST00001057969, ENST00001057970, ENST00001057971, ENST00001057972, ENST00001057979, ENST00001107230, ENST00001107231, ENST00001113505, ENST00001113506, ENST00001113507, ENST00001113508, ENST00001119001, ENST00001124498, ENST00001124499, ENST00001124500, ENST00001124501, ENST00001124502, ENST00001124503, ENST00001135087
RefSeq mRNA: 20 — MANE Select: NM_001177306
NM_000919, NM_001177306, NM_001319943, NM_001364582, NM_001364583, NM_001364584, NM_001364585, NM_001364586, NM_001364587, NM_001364588, NM_001364589, NM_001364590, NM_001364591, NM_001364592, NM_001364593, NM_001364594, NM_001438446, NM_138766, NM_138821, NM_138822
CCDS: CCDS4092, CCDS4093, CCDS4094, CCDS43348, CCDS54885, CCDS93753, CCDS93754, CCDS93755, CCDS93756, CCDS93757
Canonical transcript exons
ENST00000438793 — 26 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001957372 | 103028887 | 103029716 |
| ENSE00003459027 | 102949902 | 102949978 |
| ENSE00003461968 | 102990272 | 102990401 |
| ENSE00003470536 | 102924957 | 102925042 |
| ENSE00003474257 | 103003033 | 103003149 |
| ENSE00003495205 | 103028185 | 103028238 |
| ENSE00003505311 | 103017334 | 103017433 |
| ENSE00003512809 | 103025131 | 103025334 |
| ENSE00003549530 | 102949537 | 102949617 |
| ENSE00003552953 | 103019790 | 103019843 |
| ENSE00003554562 | 102959875 | 102960059 |
| ENSE00003557513 | 103005154 | 103005226 |
| ENSE00003563882 | 102913934 | 102914021 |
| ENSE00003564668 | 102950717 | 102950820 |
| ENSE00003573210 | 102946837 | 102946885 |
| ENSE00003578298 | 102926585 | 102926668 |
| ENSE00003582428 | 102974116 | 102974436 |
| ENSE00003596818 | 102865823 | 102866284 |
| ENSE00003609741 | 103006801 | 103007011 |
| ENSE00003623893 | 102901356 | 102901413 |
| ENSE00003624006 | 103009751 | 103009866 |
| ENSE00003633981 | 103007457 | 103007657 |
| ENSE00003634022 | 102867273 | 102867393 |
| ENSE00003653909 | 102961158 | 102961229 |
| ENSE00003678493 | 102948378 | 102948445 |
| ENSE00003920269 | 102755305 | 102755348 |
Expression profiles
Bgee: expression breadth ubiquitous, 301 present calls, max score 99.89.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 71.7303 / max 2250.7789, expressed in 1767 samples.
Highest expression (Bgee): cardiac muscle of right atrium, heart right ventricle, cardiac atrium, atrium auricular region, corpus epididymis.
Genetic regulation across tissues (GTEx eQTL / sQTL)
PAM is an eGene in GTEx v10 — its expression is genetically regulated (eQTL) in 28 tissues and its splicing (sQTL) in 33 (q < 0.05). Strongest associations first; slope = normalized effect of the lead variant’s alternative allele.
showing 20 of 61 significant tissue × QTL associations:
| Tissue | QTL | q-value | Slope | Lead variant |
|---|---|---|---|---|
| Cells Cultured fibroblasts | sqtl | 2.0e-105 | -1.09 | 5:102974462:G:A |
| Whole Blood | eqtl | 5.0e-104 | +0.68 | 5:102782303:C:T |
| Artery Tibial | sqtl | 1.4e-47 | -0.79 | 5:102974462:G:A |
| Thyroid | sqtl | 1.7e-41 | -0.63 | 5:102989988:T:C |
| Adipose Subcutaneous | sqtl | 9.3e-39 | -0.51 | 5:102989988:T:C |
| Nerve Tibial | sqtl | 6.2e-34 | -0.67 | 5:102989988:T:C |
| Lung | sqtl | 8.8e-32 | -0.58 | 5:102971151:T:TA |
| Adipose Visceral Omentum | sqtl | 3.3e-31 | -0.61 | 5:102989988:T:C |
| Artery Aorta | sqtl | 1.1e-28 | -0.75 | 5:102974462:G:A |
| Brain Cerebellar Hemisphere | eqtl | 3.0e-25 | -0.51 | 5:102628754:T:C |
| Cells EBV-transformed lymphocytes | sqtl | 6.8e-25 | -1.03 | 5:102989988:T:C |
| Whole Blood | sqtl | 2.9e-20 | -0.56 | 5:102990174:A:G |
| Breast Mammary Tissue | sqtl | 9.1e-19 | -0.57 | 5:103100407:T:A |
| Skin Sun Exposed Lower leg | sqtl | 5.6e-18 | -0.45 | 5:102990174:A:G |
| Esophagus Mucosa | sqtl | 1.1e-17 | -0.49 | 5:102989988:T:C |
| Brain Cerebellum | eqtl | 1.4e-17 | -0.49 | 5:102676962:C:T |
| Esophagus Muscularis | sqtl | 2.5e-16 | -0.40 | 5:102974462:G:A |
| Heart Atrial Appendage | sqtl | 4.2e-16 | +1.06 | 5:103025380:G:C |
| Thyroid | eqtl | 1.4e-14 | -0.20 | 5:102741554:T:C |
| Skin Not Sun Exposed Suprapubic | eqtl | 1.4e-13 | -0.16 | 5:102589070:T:G |
FANTOM5 promoters
showing 10 of 26 alternative TSS:
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 57807 | 40.3293 | 1757 |
| 57830 | 10.7537 | 1318 |
| 57827 | 5.3529 | 982 |
| 57831 | 3.7186 | 967 |
| 57826 | 3.5171 | 879 |
| 57805 | 1.2074 | 800 |
| 57806 | 1.0653 | 711 |
| 57818 | 1.0508 | 182 |
| 57823 | 1.0014 | 592 |
| 57825 | 0.8933 | 439 |
Top tissues by expression
showing 100 of 302 tissues by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| cardiac muscle of right atrium | UBERON:0003379 | 99.89 | gold quality |
| heart right ventricle | UBERON:0002080 | 99.86 | gold quality |
| cardiac atrium | UBERON:0002081 | 99.86 | gold quality |
| right atrium auricular region | UBERON:0006631 | 99.85 | gold quality |
| corpus epididymis | UBERON:0004359 | 99.83 | gold quality |
| myocardium | UBERON:0002349 | 99.80 | gold quality |
| parotid gland | UBERON:0001831 | 99.75 | gold quality |
| type B pancreatic cell | CL:0000169 | 99.70 | gold quality |
| vena cava | UBERON:0004087 | 99.65 | gold quality |
| islet of Langerhans | UBERON:0000006 | 99.64 | gold quality |
| descending thoracic aorta | UBERON:0002345 | 99.60 | gold quality |
| renal glomerulus | UBERON:0000074 | 99.59 | gold quality |
| metanephric glomerulus | UBERON:0004736 | 99.58 | gold quality |
| heart | UBERON:0000948 | 99.54 | gold quality |
| thoracic aorta | UBERON:0001515 | 99.52 | gold quality |
| blood vessel layer | UBERON:0004797 | 99.52 | gold quality |
| tibia | UBERON:0000979 | 99.51 | gold quality |
| ascending aorta | UBERON:0001496 | 99.51 | gold quality |
| synovial joint | UBERON:0002217 | 99.50 | gold quality |
| cardiac ventricle | UBERON:0002082 | 99.46 | gold quality |
| visceral pleura | UBERON:0002401 | 99.46 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 99.46 | gold quality |
| heart left ventricle | UBERON:0002084 | 99.45 | gold quality |
| Brodmann (1909) area 23 | UBERON:0013554 | 99.45 | gold quality |
| skin of hip | UBERON:0001554 | 99.44 | gold quality |
| right coronary artery | UBERON:0001625 | 99.40 | gold quality |
| seminal vesicle | UBERON:0000998 | 99.39 | gold quality |
| palpebral conjunctiva | UBERON:0001812 | 99.36 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 99.32 | gold quality |
| aorta | UBERON:0000947 | 99.31 | gold quality |
| caput epididymis | UBERON:0004358 | 99.27 | gold quality |
| endocervix | UBERON:0000458 | 99.25 | gold quality |
| decidua | UBERON:0002450 | 99.25 | gold quality |
| choroid plexus epithelium | UBERON:0003911 | 99.23 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 99.17 | gold quality |
| urethra | UBERON:0000057 | 99.16 | gold quality |
| calcaneal tendon | UBERON:0003701 | 99.16 | gold quality |
| stromal cell of endometrium | CL:0002255 | 99.15 | gold quality |
| popliteal artery | UBERON:0002250 | 99.15 | gold quality |
| tibial artery | UBERON:0007610 | 99.14 | gold quality |
| artery | UBERON:0001637 | 99.13 | gold quality |
| coronary artery | UBERON:0001621 | 99.06 | gold quality |
| left coronary artery | UBERON:0001626 | 99.05 | gold quality |
| endometrium | UBERON:0001295 | 99.04 | gold quality |
| cartilage tissue | UBERON:0002418 | 99.04 | gold quality |
| pleura | UBERON:0000977 | 99.03 | gold quality |
| apex of heart | UBERON:0002098 | 99.02 | gold quality |
| kidney epithelium | UBERON:0004819 | 99.01 | gold quality |
| saphenous vein | UBERON:0007318 | 98.99 | gold quality |
| parietal pleura | UBERON:0002400 | 98.91 | gold quality |
| layer of synovial tissue | UBERON:0007616 | 98.90 | gold quality |
| smooth muscle tissue | UBERON:0001135 | 98.89 | gold quality |
| dorsal motor nucleus of vagus nerve | UBERON:0002870 | 98.88 | gold quality |
| upper leg skin | UBERON:0004262 | 98.87 | gold quality |
| metanephros | UBERON:0000081 | 98.85 | gold quality |
| right adrenal gland cortex | UBERON:0035827 | 98.85 | gold quality |
| adrenal cortex | UBERON:0001235 | 98.84 | gold quality |
| trachea | UBERON:0003126 | 98.84 | gold quality |
| colonic epithelium | UBERON:0000397 | 98.82 | gold quality |
| cauda epididymis | UBERON:0004360 | 98.82 | gold quality |
| left adrenal gland cortex | UBERON:0035825 | 98.79 | gold quality |
| endothelial cell | CL:0000115 | 98.78 | gold quality |
| left adrenal gland | UBERON:0001234 | 98.78 | gold quality |
| right adrenal gland | UBERON:0001233 | 98.77 | gold quality |
| adrenal gland | UBERON:0002369 | 98.77 | gold quality |
| adenohypophysis | UBERON:0002196 | 98.76 | gold quality |
| nephron tubule | UBERON:0001231 | 98.75 | gold quality |
| pons | UBERON:0000988 | 98.72 | gold quality |
| pituitary gland | UBERON:0000007 | 98.70 | gold quality |
| pylorus | UBERON:0001166 | 98.69 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 98.68 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 98.65 | gold quality |
| adult organism | UBERON:0007023 | 98.65 | gold quality |
| mucosa of stomach | UBERON:0001199 | 98.64 | gold quality |
| superficial temporal artery | UBERON:0001614 | 98.53 | gold quality |
| saliva-secreting gland | UBERON:0001044 | 98.52 | gold quality |
| hypothalamus | UBERON:0001898 | 98.52 | gold quality |
| ventricular zone | UBERON:0003053 | 98.50 | gold quality |
| germinal epithelium of ovary | UBERON:0001304 | 98.48 | gold quality |
| uterus | UBERON:0000995 | 98.42 | gold quality |
| biceps brachii | UBERON:0001507 | 98.41 | gold quality |
| adrenal tissue | UBERON:0018303 | 98.39 | gold quality |
| gall bladder | UBERON:0002110 | 98.38 | gold quality |
| epithelial cell of pancreas | CL:0000083 | 98.35 | gold quality |
| myometrium | UBERON:0001296 | 98.29 | gold quality |
| esophagogastric junction muscularis propria | UBERON:0035841 | 98.29 | gold quality |
| cardia of stomach | UBERON:0001162 | 98.28 | gold quality |
| gluteal muscle | UBERON:0002000 | 98.28 | gold quality |
| thoracic mammary gland | UBERON:0005200 | 98.28 | gold quality |
| minor salivary gland | UBERON:0001830 | 98.27 | gold quality |
| mammary gland | UBERON:0001911 | 98.25 | gold quality |
| ectocervix | UBERON:0012249 | 98.23 | gold quality |
| renal medulla | UBERON:0000362 | 98.22 | gold quality |
| trigeminal ganglion | UBERON:0001675 | 98.22 | gold quality |
| left ovary | UBERON:0002119 | 98.18 | gold quality |
| skeletal muscle tissue of rectus abdominis | UBERON:0004511 | 98.18 | gold quality |
| vastus lateralis | UBERON:0001379 | 98.17 | gold quality |
| nucleus accumbens | UBERON:0001882 | 98.17 | gold quality |
| muscle layer of sigmoid colon | UBERON:0035805 | 98.16 | gold quality |
| lower esophagus muscularis layer | UBERON:0035833 | 98.15 | gold quality |
Single-cell (SCXA)
Detected in 13 experiment(s), a significant marker in 8.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-MTAB-9154 | yes | 2569.86 |
| E-HCAD-35 | yes | 1447.03 |
| E-HCAD-25 | yes | 1055.86 |
| E-MTAB-10287 | yes | 47.29 |
| E-MTAB-5061 | yes | 17.51 |
| E-GEOD-125970 | yes | 9.44 |
| E-GEOD-83139 | yes | 4.75 |
| E-ENAD-17 | no | 623.84 |
| E-CURD-114 | no | 17.96 |
| E-GEOD-81608 | no | 7.90 |
| E-ENAD-27 | no | 3.34 |
| E-HCAD-31 | no | 2.15 |
| E-ANND-3 | no | 0.00 |
HPA expression
RNA tissue specificity: Low tissue specificity
showing 60 of 155 HPA tissues / cells by nTPM:
| Tissue / cell | Axis | nTPM | Protein (IHC) |
|---|---|---|---|
| Heart muscle | tissue | 1159.0 | high |
| Epididymis | tissue | 691.0 | high |
| Cervix | tissue | 574.4 | medium |
| Locus coeruleus | tissue | 276.2 | |
| Parathyroid gland | tissue | 248.7 | not detected |
| Seminal vesicle | tissue | 204.2 | not detected |
| Salivary gland | tissue | 203.7 | low |
| Adrenal gland | tissue | 197.2 | high |
| Ovary | tissue | 157.8 | not detected |
| Choroid plexus | tissue | 156.8 | |
| Tongue | tissue | 139.0 | |
| Smooth muscle | tissue | 130.6 | medium |
| Endometrium 1 | tissue | 125.7 | medium |
| Putamen | tissue | 122.9 | |
| Basal ganglia | tissue | 119.5 | low |
| Stomach 1 | tissue | 116.7 | low |
| Pituitary gland | tissue | 115.6 | |
| Cerebral cortex | tissue | 114.0 | medium |
| Motor cortex | tissue | 114.0 | |
| Kidney | tissue | 112.2 | high |
| Hippocampal formation | tissue | 109.7 | |
| Frontal cortex | tissue | 109.5 | |
| Nucleus accumbens | tissue | 107.3 | |
| Prefrontal cortex | tissue | 105.3 | |
| Skeletal muscle | tissue | 101.7 | medium |
| Adipose tissue | tissue | 99.9 | not detected |
| Hypothalamus | tissue | 99.6 | |
| Retrosplenial and cingulate cortex | tissue | 97.7 | |
| Retrosplenial cortex | tissue | 97.0 | |
| Vagina | tissue | 96.5 | not detected |
| Pancreas | tissue | 93.9 | medium |
| Breast | tissue | 90.9 | not detected |
| Septum | tissue | 90.9 | |
| Urinary bladder | tissue | 90.5 | not detected |
| Temporal cortex | tissue | 89.4 | |
| Thyroid gland | tissue | 87.8 | not detected |
| Caudate putamen | tissue | 87.6 | |
| Ventral forebrain | tissue | 83.7 | |
| Thalamus | tissue | 83.1 | |
| Entorhinal cortex | tissue | 82.9 | |
| Gallbladder | tissue | 82.5 | not detected |
| Insular cortex | tissue | 82.3 | |
| Lung | tissue | 82.1 | not detected |
| Somatosensory cortex | tissue | 81.5 | |
| Fallopian tube | tissue | 81.2 | high |
| Prostate | tissue | 79.2 | not detected |
| Substantia nigra | tissue | 77.9 | |
| Pons | tissue | 76.7 | |
| Midbrain | tissue | 75.7 | |
| Periaqueductal gray | tissue | 75.1 | |
| Hippocampus | tissue | 74.1 | low |
| Superior colliculi | tissue | 73.4 | |
| Occipital cortex | tissue | 72.0 | |
| Rectum | tissue | 71.9 | high |
| Postcentral gyrus | tissue | 70.3 | |
| Amygdala | tissue | 66.5 | |
| Medulla oblongata | tissue | 66.0 | |
| Spinal cord | tissue | 61.5 | |
| Colon | tissue | 59.1 | high |
| Esophagus | tissue | 58.5 | not detected |
Brain sub-regions (HPA Brain Atlas): detected in 380; highest nTPM — Blood vessel (428.3), Arcuate nucleus (275.5), Lateral hypothalamic area (195.3), Ventromedial nucleus (162.6), Periaquaductal grey, anterior (152.9).
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
Targeting PAM by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific).
showing 30 of 144 miRNAs:
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-6833-3P | 100.00 | 70.63 | 3197 |
| HSA-MIR-4768-5P | 100.00 | 69.49 | 2861 |
| HSA-MIR-3134 | 100.00 | 66.43 | 777 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-126-5P | 100.00 | 72.71 | 3180 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-6759-5P | 99.99 | 66.54 | 785 |
| HSA-MIR-4282 | 99.99 | 75.36 | 6408 |
| HSA-MIR-4534 | 99.99 | 66.58 | 1907 |
| HSA-MIR-33A-5P | 99.99 | 68.62 | 1055 |
| HSA-MIR-33B-5P | 99.99 | 68.58 | 1062 |
| HSA-MIR-3148 | 99.97 | 75.06 | 6478 |
| HSA-MIR-548AN | 99.97 | 70.91 | 2817 |
| HSA-MIR-6793-5P | 99.97 | 65.95 | 758 |
| HSA-MIR-3688-3P | 99.97 | 72.02 | 2834 |
| HSA-MIR-570-3P | 99.96 | 72.41 | 4910 |
| HSA-MIR-302E | 99.96 | 70.74 | 2669 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-497-5P | 99.92 | 71.83 | 2674 |
| HSA-MIR-329-3P | 99.91 | 66.56 | 1234 |
| HSA-MIR-362-3P | 99.91 | 66.38 | 1267 |
| HSA-MIR-6809-3P | 99.91 | 71.45 | 3814 |
| HSA-MIR-10527-5P | 99.91 | 72.28 | 3754 |
| HSA-MIR-15A-5P | 99.90 | 72.80 | 2787 |
| HSA-MIR-15B-5P | 99.90 | 72.78 | 2798 |
Functional genomics
gnomAD constraint: pLI 0.000642, LOEUF 0.863, missense Z 1.26 — population loss-of-function intolerance (pLI ≥ 0.9 = LoF-intolerant; lower LOEUF = more constrained). gnomAD
Regional missense constraint (gnomAD)
ENST00000438793 splits into 3 regions with different missense tolerance; 0 are missense-constrained. Missense variants in a constrained region (low observed/expected) are more likely to be pathogenic. gnomAD
| Region (GRCh38) | Missense obs / exp | o/e | Constrained |
|---|---|---|---|
| 5:102,866,196–103,003,111 | 670 / 690.3 | 0.97 | no |
| 5:103,003,112–103,007,535 | 103 / 157.9 | 0.65 | no |
| 5:103,007,536–103,029,062 | 333 / 335.6 | 0.99 | no |
Literature-anchored findings (GeneRIF, showing 19)
- nuclear retention of PAM mRNA is lost upon expressing the La proteins that lack a conserved nuclear retention element, suggesting a direct association between PAM mRNA and La protein in vivo (PMID:16107699)
- Data indicate that catalytic inactivation of PHM caused by pH changes is accompanied by structural change between two states of the protein involving strong Cu-S interaction that does not involve M314. (PMID:22080626)
- Detail the production of the catalytic core of human peptidylglycine alpha-hydroxylating monooxygenase (hPHMcc) in Escherichia coli possessing a N-terminal fusion to thioredoxin (Trx). (PMID:22554821)
- Two missense variants in PAM, encoding p.Asp563Gly (frequency of 4.98%) and p.Ser539Trp (frequency of 0.65%), confer moderately higher risk of type 2 diabetes (OR = 1.23, P = 3.9 x 10(-10) and OR = 1.47, P = 1.7 x 10(-5), respectively) (PMID:24464100)
- Oxygen Sensitivity of the Peptidylglycine alpha-Amidating Monooxygenase (PAM) in Neuroendocrine Cells (PMID:26296884)
- PAM expression is increased in the secretory pathway of differentiated neurons. (PMID:26879543)
- Data suggest that His108 and a substrate molecule are involved in the reductive pathway while His172 and Tyr79 are important in the catalytic pathway in the copper-centered electron transfer catalyzed by peptidylglycine monooxygenase. (PMID:26982589)
- The ancient ability of PAM to localize to ciliary membranes, which release bioactive ectosomes, may be related to its ability to accumulate in intralumenal vesicles and exosomes (PMID:28377049)
- PAM single nucleotide polymorphism rs13175330 is associated with hypertension and insulin resistance in a Korean population. (PMID:29162152)
- PAM polyubiquitinates NMNAT2 and regulates NMNAT2 protein stability and degradation by the proteasome. (PMID:29997255)
- A role for PAM in beta-cell function. (PMID:30054598)
- The T2D risk-associated rs35658696 (p.Asp563Gly) allele of PAM confers decreased PAM expression in human islets. (PMID:30054598)
- The T2D risk-associated rs35658696 (p.Asp563Gly) allele of PAM confers reduced amidating activity. (PMID:30054598)
- siRNA-mediated knockdown of PAM in EndoC-BetaH1 cells caused reductions in insulin secretion and content. These effects were also observed in primary islets from human donors heterozygous for the T2D risk-associated rs35658696 variant. (PMID:30054598)
- PAM haploinsufficiency does not accelerate the development of diet- and human IAPP-induced diabetes in mice. (PMID:31984442)
- Mitochondrial Oxidative Stress Induces Rapid Intermembrane Space/Matrix Translocation of Apurinic/Apyrimidinic Endonuclease 1 Protein through TIM23 Complex. (PMID:33197464)
- PAM variants were associated with type 2 diabetes mellitus risk in the Chinese population. (PMID:35394266)
- Peptidylglycine alpha-amidating monooxygenase and adrenomedullin measurement in patients with hepatic cirrhosis. (PMID:37812053)
- PAM variants in patients with thyrotrophinomas, cyclical Cushing’s disease and prolactinomas. (PMID:38075079)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | pam | ENSDARG00000100170 |
| mus_musculus | Pam | ENSMUSG00000026335 |
| rattus_norvegicus | Pam | ENSRNOG00000033280 |
| drosophila_melanogaster | Pal2 | FBGN0262728 |
| drosophila_melanogaster | Pal1 | FBGN0283510 |
| caenorhabditis_elegans | pgal-1 | WBGENE00017671 |
Mouse-model phenotypes
Observed phenotypes of the mouse ortholog (MGI:97475) from MGI (Alliance of Genome Resources) — knockout/mutant phenotypes, ranked by annotation count. 8 distinct phenotype terms.
| Mouse phenotype (MP) | Records |
|---|---|
| edema | 1 |
| abnormal artery morphology | 1 |
| abnormal vitelline vasculature morphology | 1 |
| impaired glucose tolerance | 1 |
| increased total body fat amount | 1 |
| abnormal bronchus epithelium morphology | 1 |
| lethality throughout fetal growth and development, complete penetrance | 1 |
| umbilical vein stenosis | 1 |
Additional cross-species homologs
Sequence homologs in species beyond Ensembl Compara’s model organisms, by Diamond local protein alignment (% sequence identity; best hit per species). Lower-identity rows are more distant homologs. The matched accessions’ gene symbols aren’t in biobtree yet, so each row shows the UniProt accession.
| Organism | UniProt | Identity | Method |
|---|---|---|---|
| Bos taurus | P10731 | 92.4% | Diamond |
| Xenopus laevis | P08478 | 86.7% | Diamond |
Genomic neighbors (locus context)
Genes flanking this one on the chromosome (NCBI/Entrez gene neighborhood). Positional context only — some neighbors share regulatory elements (bidirectional promoters, antisense/overlapping transcripts), but chromosomal adjacency is not itself a functional relationship (see Interactions for that).
| Symbol | Type | Entrez |
|---|---|---|
| SLCO6A1-DT | ncRNA | 124901035 |
| LINC00491 | ncRNA | 285708 |
| LINC00492 | ncRNA | 100861468 |
| PPIP5K2 | protein-coding | 23262 |
| GIN1 | protein-coding | 54826 |
Protein
Protein identifiers
Peptidyl-glycine alpha-amidating monooxygenase — P19021 (reviewed: P19021)
All UniProt accessions (19): A0A804HI59, A0A804HIQ0, A0A804HJJ2, A0A804HK31, A0A804HKM7, A0A804HKV8, A0A804HLE0, A0A804HLJ2, A0A8C8KD64, D6R961, D6RAQ2, D6RCD5, D6RDU2, D6RF09, D6RG20, P19021, F8W8D9, H0Y9I4, H7BYD9
UniProt curated annotations — full annotation on UniProt →
Function. Bifunctional enzyme that catalyzes amidation of the C-terminus of proteins. Alpha-amidation is present at the C-terminus of many endocrine hormones and neuropeptides and is required for their activity. C-terminal amidation also takes place in response to protein fragmentation triggered by oxidative stress, promoting degradation of amidated protein fragments by the proteasome. Alpha-amidation involves two sequential reactions, both of which are catalyzed by separate catalytic domains of the enzyme. The first step, catalyzed by peptidyl alpha-hydroxylating monooxygenase (PHM) domain, is the copper-, ascorbate-, and O2- dependent stereospecific hydroxylation (with S stereochemistry) at the alpha-carbon (C-alpha) of the C-terminal glycine of the peptidylglycine substrate. The second step, catalyzed by the peptidylglycine amidoglycolate lyase (PAL) domain, is the zinc-dependent cleavage of the N-C-alpha bond, producing the alpha-amidated peptide and glyoxylate. Similarly, catalyzes the two-step conversion of an N-fatty acylglycine to a primary fatty acid amide and glyoxylate.
Subunit / interactions. Monomer. Interacts with RASSF9.
Subcellular location. Cytoplasmic vesicle. Secretory vesicle membrane Membrane Membrane Secreted Secreted.
Activity regulation. PAM activity is inhibited by EDTA, phenylglyoxal and diethyl pyrocarbonate. PAL activity is stimulated by cadmium and inhibited by mercury.
Cofactor. Binds one Zn(2+) ion per subunit. Binds 2 Cu(2+) ions per subunit.
Miscellaneous. Soluble. Soluble.
Similarity. In the C-terminal section; belongs to the peptidyl-alpha-hydroxyglycine alpha-amidating lyase family. In the N-terminal section; belongs to the copper type II ascorbate-dependent monooxygenase family.
Isoforms (6)
| UniProt ID | Names | Canonical? |
|---|---|---|
| P19021-1 | 1 | yes |
| P19021-2 | 2 | |
| P19021-3 | 3 | |
| P19021-4 | 4 | |
| P19021-5 | 5 | |
| P19021-6 | 6 |
RefSeq proteins (20): NP_000910, NP_001170777, NP_001306872, NP_001351511, NP_001351512, NP_001351513, NP_001351514, NP_001351515, NP_001351516, NP_001351517, NP_001351518, NP_001351519, NP_001351520, NP_001351521, NP_001351522, NP_001351523, NP_001425375, NP_620121, NP_620176, NP_620177 (=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR000323 | Cu2_ascorb_mOase_N | Domain |
| IPR000720 | PHM/PAL | Family |
| IPR001258 | NHL_repeat | Repeat |
| IPR008977 | PHM/PNGase_F_dom_sf | Homologous_superfamily |
| IPR011042 | 6-blade_b-propeller_TolB-like | Homologous_superfamily |
| IPR014783 | Cu2_ascorb_mOase_CS-2 | Conserved_site |
| IPR014784 | Cu2_ascorb_mOase-like_C | Homologous_superfamily |
| IPR020611 | Cu2_ascorb_mOase_CS-1 | Conserved_site |
| IPR024548 | Cu2_monoox_C | Domain |
| IPR036939 | Cu2_ascorb_mOase_N_sf | Homologous_superfamily |
Pfam: PF01082, PF01436, PF03712
Enzyme classification (BRENDA)
- EC 1.14.17.3 — peptidylglycine monooxygenase (BRENDA: 16 organisms, 234 substrates, 143 inhibitors, 170 Km, 30 kcat entries)
- EC 4.3.2.5 — peptidylamidoglycolate lyase (BRENDA: 28 organisms, 21 substrates, 22 inhibitors, 30 Km, 6 kcat entries)
Substrate kinetics (BRENDA)
131 substrates with measured Km, best-characterized 15. Km ranges are aggregated across organisms/conditions.
| Substrate | Km (mM) | Measurements |
|---|---|---|
| NALPHA-ACETYL-TYR-VAL-ALPHA-HYDROXYGLYCINE | 0.0102–0.33 | 10 |
| O2 | 0.1–658.1 | 9 |
| DANSYL-D-TYR-VAL-GLY | 0.0009–0.8 | 6 |
| N-ACETYL-TYR-VAL-GLY | 0.0012–0.0098 | 6 |
| N-ACETYLGLYCINE | 9.3–18 | 5 |
| TRINITROPHENYL-D-TYR-L-VAL-ALPHA-HYDROXY-GLY | 0.014–0.033 | 5 |
| D-TYR-PRO-GLY-GLY | 0.033–0.289 | 4 |
| D-TYR-VAL-GLY | 0.007–0.22 | 4 |
| DANSYL-L-TYR-L-VAL-GLY | 0.0033–0.0194 | 4 |
| PEPTIDYLGLYCINE | 0.009–0.018 | 4 |
| N-DANSYL-L-TYR-L-PHE-GLY | 3.5–4.5 | 3 |
| N-DECANOYLGLYCINE | 0.1–0.2 | 3 |
| ALPHA-N-ACETYL-TYR-VAL-ALPHA-HYDROXYGLYCINE | 0.013–0.238 | 3 |
| ACETYL-L-TYR-L-PHE-GLY | 0.0003–1.39 | 2 |
| DABSYL-GLY-PHE-GLY | 0.022–0.143 | 2 |
Catalyzed reactions (Rhea)
- a [peptide]-C-terminal (2S)-2-hydroxyglycine = a [peptide]-C-terminal amide + glyoxylate (RHEA:20924)
- a [peptide]-C-terminal glycine + 2 L-ascorbate + O2 = a [peptide]-C-terminal (2S)-2-hydroxyglycine + 2 monodehydro-L-ascorbate radical + H2O (RHEA:21452)
- N-dodecanoylglycine + 2 L-ascorbate + O2 = N-dodecanoyl-(2S)-hydroxyglycine + 2 monodehydro-L-ascorbate radical + H2O (RHEA:58540)
- N-tetradecanoylglycine + 2 L-ascorbate + O2 = N-tetradecanoyl-(2S)-hydroxyglycine + 2 monodehydro-L-ascorbate radical + H2O (RHEA:58544)
- N-(9Z,12Z,15Z)-octadecatrienoylglycine + 2 L-ascorbate + O2 = N-(9Z,12Z,15Z)-octadecatrienoyl-(2S)-hydroxyglycine + 2 monodehydro-L-ascorbate radical + H2O (RHEA:58548)
- N-(9Z-octadecenoyl)glycine + 2 L-ascorbate + O2 = N-(9Z-octadecenoyl)-(2S)-hydroxyglycine + 2 monodehydro-L-ascorbate radical + H2O (RHEA:58600)
- N-decanoylglycine + 2 L-ascorbate + O2 = N-decanoyl-(2S)-hydroxyglycine + 2 monodehydro-L-ascorbate radical + H2O (RHEA:58608)
- N-octanoylglycine + 2 L-ascorbate + O2 = N-octanoyl-(2S)-hydroxyglycine + 2 monodehydro-L-ascorbate radical + H2O (RHEA:58612)
- N-octanoyl-(2S)-hydroxyglycine = octanamide + glyoxylate (RHEA:58616)
- N-decanoyl-(2S)-hydroxyglycine = decanamide + glyoxylate (RHEA:58620)
- N-dodecanoyl-(2S)-hydroxyglycine = dodecanamide + glyoxylate (RHEA:58624)
- N-tetradecanoyl-(2S)-hydroxyglycine = tetradecamide + glyoxylate (RHEA:58632)
UniProt features (58 total): binding site 15, modified residue 8, disulfide bond 7, repeat 5, splice variant 5, region of interest 4, sequence conflict 4, compositionally biased region 2, topological domain 2, signal peptide 1, propeptide 1, chain 1, glycosylation site 1, transmembrane region 1, sequence variant 1
Structure
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-P19021-F1 | 71.54 | 0.44 |
Human Protein Atlas
Protein class: Enzymes, ENZYME proteins, Transferases, Metabolic proteins, Predicted intracellular proteins
Protein evidence: Evidence at protein level
Subcellular location (HPA, imaging): nucleoplasm; cytosol; vesicles
Antibody reliability (HPA): IF supported
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Ligand- & substrate-binding residues (15)
| Position | Role |
|---|---|
| 102 | Cu(2+) |
| 103 | Cu(2+) |
| 167 | Cu(2+) |
| 237 | Cu(2+) |
| 239 | Cu(2+) |
| 309 | Cu(2+) |
| 517 | Ca(2+) |
| 530 | a protein |
| 582 | Zn(2+) |
| 584 | Ca(2+) |
| 651 | a protein |
| 687 | Zn(2+) |
| 703 | a protein |
| 783 | Zn(2+) |
| 784 | Ca(2+) |
Post-translational modifications (8)
| Type | Positions |
|---|---|
| Phosphoserine | 918, 929, 942, 946, 957 |
| Phosphothreonine | 943 |
| Sulfotyrosine | 893, 875 |
Disulfide bonds (7)
| Type | Positions |
|---|---|
| Disulfide bond | 42–181, 76–121, 109–126, 222–329, 288–310, 631–652, 699–710 |
Glycosylation sites (1)
| Type | Positions |
|---|---|
| N-linked (glcnac…) asparagine | 762 |
Function
Pathways and Gene Ontology
Reactome pathways
0 curated (TAS) of 0; 0 disease pathways. Curated-first; evidence = TAS (manually curated) vs IEA (electronic inference).
MSigDB gene sets: 322 (showing top):
GSE18804_SPLEEN_MACROPHAGE_VS_BRAIN_TUMORAL_MACROPHAGE_DN, VERHAAK_AML_WITH_NPM1_MUTATED_DN, MODULE_93, ZHAN_LATE_DIFFERENTIATION_GENES_UP, GOBP_RESPONSE_TO_ZINC_ION, GGTGTGT_MIR329, GOMF_OXIDOREDUCTASE_ACTIVITY_ACTING_ON_PAIRED_DONORS_WITH_INCORPORATION_OR_REDUCTION_OF_MOLECULAR_OXYGEN, GOCC_SECRETORY_GRANULE, GCANCTGNY_MYOD_Q6, KAAB_HEART_ATRIUM_VS_VENTRICLE_UP, SHAFFER_IRF4_TARGETS_IN_ACTIVATED_B_LYMPHOCYTE, ACEVEDO_LIVER_CANCER_WITH_H3K27ME3_UP, CAGCTG_AP4_Q5, GOBP_RESPONSE_TO_METAL_ION, SHAFFER_IRF4_TARGETS_IN_PLASMA_CELL_VS_MATURE_B_LYMPHOCYTE
GO Biological Process (6): peptide amidation (GO:0001519), response to zinc ion (GO:0010043), cellular response to oxidative stress (GO:0034599), fatty acid primary amide biosynthetic process (GO:0062112), peptide metabolic process (GO:0006518), lipid metabolic process (GO:0006629)
GO Molecular Function (13): peptidylglycine monooxygenase activity (GO:0004504), peptidylamidoglycolate lyase activity (GO:0004598), copper ion binding (GO:0005507), calcium ion binding (GO:0005509), zinc ion binding (GO:0008270), L-ascorbic acid binding (GO:0031418), catalytic activity (GO:0003824), monooxygenase activity (GO:0004497), protein binding (GO:0005515), oxidoreductase activity (GO:0016491), oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen (GO:0016715), lyase activity (GO:0016829), metal ion binding (GO:0046872)
GO Cellular Component (6): extracellular region (GO:0005576), membrane (GO:0016020), transport vesicle membrane (GO:0030658), secretory granule membrane (GO:0030667), extracellular exosome (GO:0070062), cytoplasmic vesicle (GO:0031410)
GO top-level categories
32 GO namespaces:
| Category | Terms |
|---|---|
| transition metal ion binding | 2 |
| catalytic activity | 2 |
| cellular anatomical structure | 2 |
| cytoplasmic vesicle membrane | 2 |
| bounding membrane of organelle | 2 |
| peptide modification | 1 |
| response to metal ion | 1 |
| response to oxidative stress | 1 |
| cellular response to chemical stress | 1 |
| fatty acid primary amide metabolic process | 1 |
| fatty acid derivative biosynthetic process | 1 |
| metabolic process | 1 |
| primary metabolic process | 1 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen | 1 |
| amidine-lyase activity | 1 |
| catalytic activity, acting on a protein | 1 |
| metal ion binding | 1 |
| vitamin binding | 1 |
| carboxylic acid binding | 1 |
| monosaccharide binding | 1 |
| heterocyclic compound binding | 1 |
| molecular_function | 1 |
| oxidoreductase activity | 1 |
| binding | 1 |
| monooxygenase activity | 1 |
| oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1 |
| cation binding | 1 |
| transport vesicle | 1 |
| secretory granule | 1 |
| extracellular vesicle | 1 |
| cytoplasm | 1 |
| intracellular vesicle | 1 |
Experimentally-supported GO annotations
GO terms backed by direct experimental evidence (ECO experimental codes) — 7 of 25 annotations. The rest are phylogenetic / computational / electronic (IEA).
7 experimentally-supported GO terms:
| GO term | NS | Evidence |
|---|---|---|
| peptide amidation | BP | direct assay |
| response to zinc ion | BP | direct assay |
| extracellular exosome | CC | high-throughput assay |
| membrane | CC | high-throughput assay |
| peptidylamidoglycolate lyase activity | MF | direct assay |
| peptidylglycine monooxygenase activity | MF | direct assay |
| zinc ion binding | MF | direct assay |
Protein interactions and networks
STRING
showing 15 of 492 interactions by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| PAM | CYB561 | P49447 | 846 |
| PAM | TOR2A | Q5JU69 | 830 |
| PAM | KALRN | O60229 | 806 |
| PAM | RASSF9 | O75901 | 719 |
| PAM | CPE | P16870 | 697 |
| PAM | PCSK1 | P29120 | 625 |
| PAM | DAPK1 | P53355 | 552 |
| PAM | IAPP | P10997 | 526 |
| PAM | ATP7A | Q04656 | 512 |
| PAM | MCF2 | P10911 | 504 |
| PAM | PCSK2 | P16519 | 500 |
| PAM | SHD | Q96IW2 | 497 |
| PAM | TOR1A | O14656 | 494 |
| PAM | CHGA | P10645 | 487 |
| PAM | F11R | Q9Y624 | 481 |
IntAct
Human interaction partners of PAM in IntAct, one row per partner (best MIscore; records = supporting IntAct interaction records).
4 partners by confidence:
| Partner | Interaction type | MIscore | Records |
|---|---|---|---|
| UBR2 | association | 0.530 | 1 |
| DEDD | physical association | 0.000 | 1 |
| DISC1 | physical association | 0.000 | 1 |
| PRKAR1A | physical association | 0.000 | 1 |
BioGRID (78 interactions; top human partners by supporting records): ART3 (Affinity Capture-MS; 3 records), B3GNT2 (Affinity Capture-MS; 3 records), PTCH1 (Affinity Capture-MS; 3 records), SERPINA6 (Affinity Capture-MS; 3 records), TAZ (Affinity Capture-MS; 3 records), TMEM25 (Affinity Capture-MS; 3 records), TSC2 (Two-hybrid; 3 records), UBR2 (Affinity Capture-MS; 3 records), DKKL1 (Affinity Capture-MS; 2 records), GAA (Affinity Capture-MS; 2 records), IDS (Affinity Capture-MS; 2 records), KALRN (Two-hybrid; 2 records), RALB (Affinity Capture-MS; 2 records), RASSF9 (Two-hybrid; 2 records), ADAMTS12 (Affinity Capture-MS)
SIGNOR signaling
2 signaling interactions:
| A | Effect | B | Mechanism |
|---|---|---|---|
| UHMK1 | unknown | PAM | phosphorylation |
| PAM | “up-regulates activity” | Oxytocin | cleavage |
Disease & clinical
Genetic variants
Variant evidence for PAM: 113 ClinVar records (0 pathogenic / likely pathogenic).
ClinVar
113 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 0 |
| Uncertain significance | 77 |
| Likely benign | 4 |
| Benign | 7 |
AlphaMissense
2,006 missense substitutions predicted likely pathogenic (of 6,412 scored), across 492 residues. Top 20 hotspot residues, ranked by the number of likely-pathogenic substitutions (of those reachable by a single-nucleotide change), then by mean score:
| Residue | Likely-pathogenic substitutions | Mean am_pathogenicity | Max am_pathogenicity |
|---|---|---|---|
| M309 | 9 | 0.976 | 0.995 |
| M315 | 9 | 0.867 | 0.984 |
| H103 | 8 | 0.994 | 0.997 |
| H167 | 8 | 0.990 | 0.998 |
| H237 | 8 | 0.987 | 0.997 |
| D180 | 8 | 0.984 | 0.996 |
| F269 | 8 | 0.978 | 0.998 |
| D649 | 8 | 0.978 | 0.995 |
| H239 | 8 | 0.976 | 0.993 |
| D596 | 8 | 0.976 | 0.995 |
| F232 | 8 | 0.972 | 0.997 |
| F151 | 8 | 0.966 | 0.998 |
| F540 | 8 | 0.965 | 0.997 |
| H582 | 8 | 0.964 | 0.990 |
| H102 | 8 | 0.963 | 0.987 |
| F290 | 8 | 0.963 | 0.997 |
| H600 | 8 | 0.963 | 0.991 |
| F174 | 8 | 0.962 | 0.995 |
| D282 | 8 | 0.960 | 0.987 |
| F92 | 8 | 0.953 | 0.997 |
HPA cancer prognostics
RNA cancer specificity: Low cancer specificity
Human Protein Atlas survival analysis — favorable = higher expression predicts better survival.
1 prognostic cancer types:
| Cancer | Prognostic | p-value |
|---|---|---|
| Kidney Renal Clear Cell Carcinoma (TCGA) | favorable | 3.37e-06 |
Disease associations
OMIM: gene MIM:170270 | disease phenotypes:
Drugs & pharmacology
Drug and pharmacology data
Is drug target: yes
ChEMBL targets (1): CHEMBL2544 (SINGLE PROTEIN)
PharmGKB: 1 entry (CPIC guideline: no)
Binding affinities (BindingDB)
16 measured of 16 human assays (17 total across all organisms); most potent 16 below. Values come from heterogeneous assays and are not directly comparable.
| Ligand | Measure | Value |
|---|---|---|
| ((E)-Styrylsulfanyl)-acetic acid | KI | 0.1 nM |
| Phenylethynylsulfanyl-acetic acid | KI | 0.19 nM |
| CHEMBL2207130 | IC50 | 2000 nM |
| CHEMBL2207128 | IC50 | 3000 nM |
| CHEMBL2207127 | IC50 | 11000 nM |
| CHEMBL2207143 | IC50 | 12000 nM |
| CHEMBL2207129 | IC50 | 38000 nM |
| CHEMBL2207141 | IC50 | 120000 nM |
| CHEMBL2207133 | IC50 | 160000 nM |
| CHEMBL2207142 | IC50 | 180000 nM |
| CHEMBL2207145 | IC50 | 290000 nM |
| CHEMBL2207132 | IC50 | 350000 nM |
| CHEMBL2207144 | IC50 | 500000 nM |
| CHEMBL2207131 | IC50 | 1.1e+06 nM |
| CHEMBL2207146 | IC50 | 1.1e+06 nM |
| CHEMBL2207140 | IC50 | 1.8e+06 nM |
ChEMBL bioactivities
14 potent at pChembl≥5 of 25 total, top 14 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).
| pChembl | Type | Value | Unit | Molecule |
|---|---|---|---|---|
| 10.00 | Ki | 0.1 | nM | CHEMBL127222 |
| 9.72 | Ki | 0.19 | nM | CHEMBL335660 |
| 7.40 | IC50 | 40 | nM | CHEMBL3221589 |
| 7.30 | IC50 | 50 | nM | CHEMBL3221589 |
| 7.22 | IC50 | 60 | nM | CHEMBL3221585 |
| 7.02 | Ki | 96 | nM | CHEMBL2269608 |
| 6.92 | IC50 | 120 | nM | CHEMBL3221589 |
| 5.70 | IC50 | 2000 | nM | CHEMBL2207130 |
| 5.70 | IC50 | 2000 | nM | CHEMBL3217795 |
| 5.52 | IC50 | 3000 | nM | CHEMBL2207128 |
| 5.30 | IC50 | 5000 | nM | CHEMBL2207127 |
| 5.22 | IC50 | 6000 | nM | CHEMBL2207129 |
| 5.22 | IC50 | 6000 | nM | CHEMBL2207127 |
| 5.05 | IC50 | 9000 | nM | CHEMBL2207128 |
PubChem BioAssay actives
5 with measured affinity, of 68 total; 4 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.
| Compound | Assay | Type | Value | Unit |
|---|---|---|---|---|
| 2-[(2S)-2-[[(2S)-2-[[(2S)-1-[(4R,7S,10S,13S,16S,19R)-19-amino-7-(2-amino-2-oxoethyl)-10-(3-amino-3-oxopropyl)-13-[(2S)-butan-2-yl]-16-[(4-hydroxyphenyl)methyl]-6,9,12,15,18-pentaoxo-1,2-dithia-5,8,11,14,17-pentazacycloicosane-4-carbonyl]pyrrolidine-2-carbonyl]amino]-4-methylpentanoyl]amino]-3-phenylpropanoyl]oxyacetic acid | 717278: Competitive inhibition of PAM in human DMS53 cells using as(R)-Tyr-(S)-Val-Gly as substrate after 2 hrs by HPLC analysis | ic50 | 2.0000 | uM |
| 2-[(2S)-2-[[(2S)-2-acetamido-4-methylpentanoyl]amino]-3-phenylpropanoyl]oxyacetic acid | 717278: Competitive inhibition of PAM in human DMS53 cells using as(R)-Tyr-(S)-Val-Gly as substrate after 2 hrs by HPLC analysis | ic50 | 3.0000 | uM |
| 2-[(2S)-2-acetamido-3-phenylpropanoyl]oxyacetic acid | 717278: Competitive inhibition of PAM in human DMS53 cells using as(R)-Tyr-(S)-Val-Gly as substrate after 2 hrs by HPLC analysis | ic50 | 5.0000 | uM |
| 2-[(2S)-2-[[(2S)-2-[[(2S)-1-acetylpyrrolidine-2-carbonyl]amino]-4-methylpentanoyl]amino]-3-phenylpropanoyl]oxyacetic acid | 717278: Competitive inhibition of PAM in human DMS53 cells using as(R)-Tyr-(S)-Val-Gly as substrate after 2 hrs by HPLC analysis | ic50 | 6.0000 | uM |
CTD chemical–gene interactions
50 total (human), top 30 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Valproic Acid | affects expression, increases expression | 3 |
| Cadmium Chloride | decreases expression, increases abundance, increases expression | 3 |
| sodium arsenite | decreases expression, affects cotreatment, increases abundance | 2 |
| Air Pollutants | increases abundance, increases oxidation, decreases expression, affects cotreatment | 2 |
| Estradiol | increases expression, affects cotreatment, decreases expression | 2 |
| Oxygen | increases expression | 2 |
| Tobacco Smoke Pollution | affects expression, increases expression | 2 |
| aristolochic acid I | decreases expression | 1 |
| FR900359 | increases phosphorylation | 1 |
| triphenyl phosphate | affects expression | 1 |
| alpha-pinene | affects cotreatment, increases oxidation, increases abundance | 1 |
| bisphenol A | decreases methylation | 1 |
| terbufos | increases methylation | 1 |
| beta-lapachone | decreases expression | 1 |
| arsenite | affects expression | 1 |
| nickel sulfate | decreases expression | 1 |
| methacrylaldehyde | affects cotreatment, increases oxidation, increases abundance | 1 |
| chloropicrin | decreases expression | 1 |
| jinfukang | affects cotreatment, decreases expression | 1 |
| NSC 689534 | increases expression | 1 |
| Irinotecan | decreases expression | 1 |
| Temozolomide | decreases expression | 1 |
| Sunitinib | decreases expression | 1 |
| Acrolein | affects cotreatment, increases oxidation, increases abundance | 1 |
| Ethanol | affects cotreatment, increases expression | 1 |
| Allergens | decreases expression | 1 |
| Arsenic | affects cotreatment, decreases expression, increases abundance | 1 |
| Benzo(a)pyrene | affects methylation | 1 |
| Cadmium | increases abundance, increases expression | 1 |
| Cisplatin | affects cotreatment, decreases expression | 1 |
ChEMBL screening assays
14 unique, capped per target: 14 binding
Representative assays (with source publication via chembl_document):
| Assay ID | Type | Description | Source paper |
|---|---|---|---|
| CHEMBL2211742 | Binding | Binding affinity to secreted PAM in human DMS53 cell culture medium after 2 hrs by HPLC analysis | Prohormone-substrate peptide sequence recognition by peptidylglycine α-amidating monooxygenase and its reflection in increased glycolate inhibitor potency. — *Bioorg Med Chem Lett* |
Cellosaurus cell lines
1 cell lines: 1 transformed cell line
First 10 cell lines (id-ordered, not curated):
| Cellosaurus | Name | Category | Sex |
|---|---|---|---|
| CVCL_YB09 | EndoC-betaH1 PAM-KO | Transformed cell line | Female |
Clinical trials (associated diseases)
Via MONDO — disease-level, not drug-specific.
Predicted chemistry — Sugi Predict
The predicted patent-compound landscape for PAM across ~30M SureChEMBL compounds — explore on Sugi Predict.
Related Atlas pages
No linked Atlas pages yet — the cross-entity mesh grows as the corpus expands.