PAQR9-AS1

Summary

PAQR9-AS1 (PAQR9 antisense RNA 1, HGNC:50861) is a long non-coding RNA gene on chromosome 3q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:50861
Approved symbol	PAQR9-AS1
Name	PAQR9 antisense RNA 1
Location	3q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000241570
Ensembl biotype	lncRNA
Entrez	101927832
RNAcentral	URS000017CDB1 — lncRNA, 516 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000478823, ENST00000493825, ENST00000497652, ENST00000593321, ENST00000594095, ENST00000595248, ENST00000595774, ENST00000598139, ENST00000598787, ENST00000607937, ENST00000608349, ENST00000608686, ENST00000625677, ENST00000625937, ENST00000627207

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000478823 — 2 exons

Exon	Start	End
ENSE00001817318	142964465	142964903
ENSE00001833915	142964160	142964330

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 86.67.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0187 / max 2.9820, expressed in 8 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
38968	0.0187	8

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	86.67	gold quality
right lobe of liver	UBERON:0001114	86.31	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.06	gold quality
sural nerve	UBERON:0015488	81.92	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	80.54	gold quality
primary visual cortex	UBERON:0002436	78.87	gold quality
nucleus accumbens	UBERON:0001882	77.90	gold quality
superior frontal gyrus	UBERON:0002661	75.95	gold quality
cortical plate	UBERON:0005343	75.71	gold quality
anterior cingulate cortex	UBERON:0009835	75.66	gold quality
hypothalamus	UBERON:0001898	75.26	gold quality
apex of heart	UBERON:0002098	75.18	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	75.15	gold quality
adrenal tissue	UBERON:0018303	74.60	gold quality
prefrontal cortex	UBERON:0000451	74.52	gold quality
cerebral cortex	UBERON:0000956	74.43	gold quality
Ammon’s horn	UBERON:0001954	73.84	gold quality
putamen	UBERON:0001874	73.71	gold quality
frontal cortex	UBERON:0001870	73.68	gold quality
Brodmann (1909) area 9	UBERON:0013540	73.57	gold quality
bone marrow cell	CL:0002092	72.71	silver quality
caudate nucleus	UBERON:0001873	72.48	gold quality
brain	UBERON:0000955	72.10	gold quality
right frontal lobe	UBERON:0002810	71.98	gold quality
temporal lobe	UBERON:0001871	71.82	gold quality
heart left ventricle	UBERON:0002084	71.74	gold quality
amygdala	UBERON:0001876	71.71	gold quality
right atrium auricular region	UBERON:0006631	71.43	gold quality
skeletal muscle tissue	UBERON:0001134	71.08	gold quality
testis	UBERON:0000473	70.73	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.