PATJ-DT

Summary

PATJ-DT (PATJ divergent transcript, HGNC:55256) is a long non-coding RNA gene on chromosome 1p31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55256
Approved symbol	PATJ-DT
Name	PATJ divergent transcript
Location	1p31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271200
Ensembl biotype	lncRNA
Entrez	118732297
RNAcentral	URS00026A25ED — lncRNA, 787 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000605725

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000605725 — 1 exons

Exon	Start	End
ENSE00003554134	61741998	61742424

Expression profiles

Bgee: expression breadth ubiquitous, 128 present calls, max score 98.99.

Top tissues by expression

128 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.99	gold quality
sural nerve	UBERON:0015488	88.93	gold quality
right hemisphere of cerebellum	UBERON:0014890	73.10	gold quality
cerebellum	UBERON:0002037	72.98	gold quality
cerebellar cortex	UBERON:0002129	72.88	gold quality
cerebellar hemisphere	UBERON:0002245	72.73	gold quality
primary visual cortex	UBERON:0002436	71.74	gold quality
left ovary	UBERON:0002119	71.25	gold quality
popliteal artery	UBERON:0002250	71.14	gold quality
tibial artery	UBERON:0007610	71.13	gold quality
right ovary	UBERON:0002118	71.03	gold quality
ovary	UBERON:0000992	70.42	gold quality
ascending aorta	UBERON:0001496	70.30	gold quality
thoracic aorta	UBERON:0001515	70.25	gold quality
descending thoracic aorta	UBERON:0002345	69.40	gold quality
tibial nerve	UBERON:0001323	68.44	gold quality
left coronary artery	UBERON:0001626	68.43	gold quality
ventricular zone	UBERON:0003053	68.25	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.87	gold quality
nucleus accumbens	UBERON:0001882	67.77	gold quality
putamen	UBERON:0001874	67.43	gold quality
myometrium	UBERON:0001296	66.91	gold quality
body of uterus	UBERON:0009853	66.65	gold quality
brain	UBERON:0000955	66.56	gold quality
lower esophagus muscularis layer	UBERON:0035833	66.43	gold quality
lower esophagus	UBERON:0013473	66.37	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	66.33	gold quality
caudate nucleus	UBERON:0001873	66.30	gold quality
superior frontal gyrus	UBERON:0002661	66.28	gold quality
ganglionic eminence	UBERON:0004023	66.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.90

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.