PATL1-DT

Summary

PATL1-DT (PATL1 divergent transcript, HGNC:55501) is a long non-coding RNA gene on chromosome 11q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:55501
Approved symbol	PATL1-DT
Name	PATL1 divergent transcript
Location	11q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255355
Ensembl biotype	lncRNA
Entrez	105369318
RNAcentral	URS00026A2885 — lncRNA, 878 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000531276, ENST00000534120, ENST00000793135, ENST00000793136, ENST00000793137

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000531276 — 3 exons

Exon	Start	End
ENSE00004175697	59675397	59676050
ENSE00004175702	59669300	59669542
ENSE00004175703	59674927	59674973

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 79.69.

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.69	silver quality
calcaneal tendon	UBERON:0003701	67.74	gold quality
sural nerve	UBERON:0015488	67.43	gold quality
ventricular zone	UBERON:0003053	64.99	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.69	gold quality
adrenal tissue	UBERON:0018303	63.43	gold quality
ganglionic eminence	UBERON:0004023	63.02	gold quality
bone marrow	UBERON:0002371	62.82	gold quality
skeletal muscle tissue	UBERON:0001134	62.41	gold quality
monocyte	CL:0000576	61.10	gold quality
corpus callosum	UBERON:0002336	60.95	gold quality
stromal cell of endometrium	CL:0002255	60.56	gold quality
endometrium	UBERON:0001295	60.01	gold quality
cortical plate	UBERON:0005343	59.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.16	gold quality
body of pancreas	UBERON:0001150	58.23	gold quality
blood	UBERON:0000178	57.34	gold quality
pancreas	UBERON:0001264	57.32	gold quality
liver	UBERON:0002107	57.29	gold quality
muscle of leg	UBERON:0001383	56.31	gold quality
superior frontal gyrus	UBERON:0002661	56.19	gold quality
left adrenal gland cortex	UBERON:0035825	56.09	gold quality
vermiform appendix	UBERON:0001154	56.05	gold quality
cortex of kidney	UBERON:0001225	55.98	gold quality
right lung	UBERON:0002167	55.80	gold quality
adrenal gland	UBERON:0002369	55.75	gold quality
kidney	UBERON:0002113	55.73	gold quality
smooth muscle tissue	UBERON:0001135	55.51	gold quality
left adrenal gland	UBERON:0001234	55.42	gold quality
testis	UBERON:0000473	55.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.